pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C11orf54   
Synonyms PTD012, PTOD012
Description chromosome 11 open reading frame 54
Transcript NM_014039   
Expression
Putative miRNA Targets on C11orf54
3'UTR of C11orf54
(miRNA target sites are highlighted)
>C11orf54|NM_014039|3'UTR
   1 ATCAGCTGATACTTATTTAGAAAAAGAAATAATTAAGGTTAATTAATTGATTGACTTATTAATTAATACTGATATAAAAC
  81 CAATAGAAATGATCCCACAGGCCAGGCACAATGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGAAGCA
 161 CACTGGAGCCCAGGAGTTTGAGACCAGCTTGGGCAACATAGCAAGACCCTGTCTATTTTTTTAAAAAAGTAAAAAATAGA
 241 AATTATCTCACTACTTAAATCCCATTTTTTTCACTTCATATGAAAGAACATATTGATAGTATATTCTATATTATTTCATA
 321 GATCTGTCTGAAAGAGATTGGGAACAAAAATATCTAATTGAGATATTCTTTAATTTTTTACATAGCAGCTTTATTTTTTT
 401 TATTCTGTAGTATCAGCGAAATCAGTCATGTTTATACCTTGAATATAAATATCAGGAATCATGCAATTATTTCTACTATG
 481 TATTTAGTAGTATCTTATATTTGTATAACATTATTACATTTTGCAAATTAGTATCACAACTGCTAAGTAGATGTTTCTGA
 561 GTATTAGAAAAATCAGTGTTATTACCTGCAGGATATTAAAAAACATTTGAAAAAGAGAAAAAGAAAAATCAGTGTTTAGA
 641 AATGTTGATAGTTATTGAATCTTTGAATTGAATTTTAAAAATCCATTCTAGTAATCAGAGTATACTTTTTTTATAGAACA
 721 AGGTGGCAGGTGGGGAGCCCTTTACCCTTCTGGTGAAGTTAAACCATAGAAGTTTACAATTTGCCTTTCACAAACATTAG
 801 CAGTCCGGGCATGGTGGCTGAAGCCTGTGATCCCAGCATGTTGGGAGGCCGAGTGGGAGGATTGCCTGAGCCTAGGAGTT
 881 TAAACCAGCCTGGGCACCATGGTGAGACCCCATCTCTATTATTTAAAATGTTTCTTAAATAAAAAAAACACAAACATTAG
 961 CAACTAGTTGGCTAGCCATAATTCCTCCCTTGTTTCGATTGCCAGTTAGAAGCAATTTTTATTTCACTGGTTATTTGCAA
1041 GAGAAGGGGTAAAAAAACAGCATCAGAGTGCAACACTGAAGTGAGCTTACTTTAATTTGTAAGTGAAGCTGTTGCTGAAC
1121 ATGACCACTATCGTTGCTGAAATATAAAATTATACTCACTGATTGTAATGGTTGAAATTTTCCTGAATAATCATTAGCCA
1201 AAGATCAACTCTCTAATGGTGCTAATGGCAATCTAGCTAATGTGCAAATTTAGGAAGTCTTCAGTACTAAGTACATAATT
1281 TTCAAATAATATTTTTTAATTGTCTACTTTGGATGTTAGCTATGTCTTGTGAGTATAAATTCCAATTTTAAGCACTATTT
1361 TGATGCAAAAAAATGAATAAAAAATTTAATTTATGATATGTTTGTAATATCTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggACCUACGUUUAAAAu 5'
             ||| || ||||||| 
Target 5' taaTGGTTG-AAATTTTc 3'
1166 - 1182 154.00 -5.20
2
miRNA  3' aggaccUACGUUUAAAau 5'
                :|||||||||  
Target 5' gctaatGTGCAAATTTag 3'
1236 - 1253 136.00 -6.80
3
miRNA  3' agGACCUACG----UUUAAAau 5'
            ||||| ||    :|:|||  
Target 5' caCTGGA-GCCCAGGAGTTTga 3'
161 - 181 101.00 -9.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20108583 27 COSMIC
COSN30518016 35 COSMIC
COSN31558423 70 COSMIC
COSN5924670 98 COSMIC
COSN28571484 125 COSMIC
COSN17037796 309 COSMIC
COSN18980436 448 COSMIC
COSN29598711 851 COSMIC
COSN23322528 1649 COSMIC
COSN7292777 1686 COSMIC
COSN25472360 1904 COSMIC
COSN25952704 1907 COSMIC
COSN25163733 1911 COSMIC
COSN7292778 1912 COSMIC
COSN20764514 1928 COSMIC
COSN10094710 2613 COSMIC
COSN16952113 2764 COSMIC
COSN20874682 3006 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755270663 4 dbSNP
rs1456852947 10 dbSNP
rs758883755 11 dbSNP
rs1040612653 12 dbSNP
rs1257094674 17 dbSNP
rs201221620 21 dbSNP
rs780599730 24 dbSNP
rs10552778 25 dbSNP
rs72097212 25 dbSNP
rs750255418 25 dbSNP
rs1233943154 26 dbSNP
rs201137929 27 dbSNP
rs1319841143 29 dbSNP
rs765460647 29 dbSNP
rs1449253750 31 dbSNP
rs752905375 32 dbSNP
rs1229526114 36 dbSNP
rs550272452 38 dbSNP
rs755628191 39 dbSNP
rs1463868098 44 dbSNP
rs777352912 46 dbSNP
rs777803259 46 dbSNP
rs1417723548 47 dbSNP
rs200896390 50 dbSNP
rs757237467 52 dbSNP
rs998687769 56 dbSNP
rs1162692566 58 dbSNP
rs1028299241 71 dbSNP
rs959369620 73 dbSNP
rs1328139264 74 dbSNP
rs1318662925 75 dbSNP
rs954026390 95 dbSNP
rs1005476288 107 dbSNP
rs535869260 110 dbSNP
rs1386265773 113 dbSNP
rs1338905653 118 dbSNP
rs1470452375 129 dbSNP
rs1017010663 141 dbSNP
rs1282892608 148 dbSNP
rs961483487 149 dbSNP
rs1476636223 151 dbSNP
rs1374156095 152 dbSNP
rs1193178786 154 dbSNP
rs1127582 158 dbSNP
rs973337015 162 dbSNP
rs1245410164 163 dbSNP
rs1010888692 167 dbSNP
rs1461516678 169 dbSNP
rs376702873 172 dbSNP
rs1277214884 187 dbSNP
rs1198249262 188 dbSNP
rs1022497156 200 dbSNP
rs955701458 202 dbSNP
rs1227630010 209 dbSNP
rs1270696664 209 dbSNP
rs966974823 211 dbSNP
rs1436186292 216 dbSNP
rs1362744282 223 dbSNP
rs985710779 223 dbSNP
rs978247182 229 dbSNP
rs1339174766 232 dbSNP
rs1244760436 238 dbSNP
rs1358807465 240 dbSNP
rs928130986 256 dbSNP
rs911441341 264 dbSNP
rs1397352340 265 dbSNP
rs1411726990 265 dbSNP
rs776334020 275 dbSNP
rs1215164150 277 dbSNP
rs990996570 278 dbSNP
rs1387422450 282 dbSNP
rs1184594757 286 dbSNP
rs916358971 290 dbSNP
rs74467462 302 dbSNP
rs1048797025 304 dbSNP
rs1464166568 308 dbSNP
rs912995994 309 dbSNP
rs759229653 319 dbSNP
rs907752310 323 dbSNP
rs1273160898 325 dbSNP
rs1340013026 330 dbSNP
rs1209619110 343 dbSNP
rs1246459496 346 dbSNP
rs940594140 353 dbSNP
rs945803060 359 dbSNP
rs1045863300 364 dbSNP
rs907053365 367 dbSNP
rs1001284923 374 dbSNP
rs1040175900 383 dbSNP
rs1428306123 387 dbSNP
rs1164835652 394 dbSNP
rs1368013027 394 dbSNP
rs901692315 395 dbSNP
rs532737141 399 dbSNP
rs887688901 409 dbSNP
rs1412135766 417 dbSNP
rs1179734928 435 dbSNP
rs1470973229 442 dbSNP
rs1251861985 454 dbSNP
rs1260811714 470 dbSNP
rs1005549897 471 dbSNP
rs114013326 479 dbSNP
rs897263282 481 dbSNP
rs1320865756 485 dbSNP
rs994278799 488 dbSNP
rs1225641315 491 dbSNP
rs1351674212 499 dbSNP
rs1186828117 501 dbSNP
rs15345 513 dbSNP
rs1287739499 525 dbSNP
rs1030118800 527 dbSNP
rs1347535430 538 dbSNP
rs1304253369 540 dbSNP
rs1436462286 542 dbSNP
rs1348453543 543 dbSNP
rs1161776998 548 dbSNP
rs1402018229 552 dbSNP
rs1412274468 555 dbSNP
rs1158038992 564 dbSNP
rs1471321687 577 dbSNP
rs1476191749 579 dbSNP
rs1157054372 589 dbSNP
rs1388124001 590 dbSNP
rs1244696932 591 dbSNP
rs1217690256 607 dbSNP
rs1465224642 612 dbSNP
rs1457996400 614 dbSNP
rs1226834027 618 dbSNP
rs1050257397 620 dbSNP
rs955572994 635 dbSNP
rs985617584 643 dbSNP
rs1018575843 646 dbSNP
rs752709929 651 dbSNP
rs1010860695 653 dbSNP
rs1290968413 654 dbSNP
rs756211772 656 dbSNP
rs1290942790 657 dbSNP
rs182857403 662 dbSNP
rs1335527793 666 dbSNP
rs188198554 673 dbSNP
rs1234524646 687 dbSNP
rs769635448 714 dbSNP
rs1407600579 724 dbSNP
rs912910387 728 dbSNP
rs945679352 734 dbSNP
rs558670124 738 dbSNP
rs1035173412 739 dbSNP
rs1188275587 747 dbSNP
rs576973387 747 dbSNP
rs1449809550 750 dbSNP
rs1247243742 752 dbSNP
rs1239366622 766 dbSNP
rs1454648223 767 dbSNP
rs1462851338 769 dbSNP
rs1256597310 770 dbSNP
rs928340556 771 dbSNP
rs1310578611 773 dbSNP
rs1262245201 777 dbSNP
rs775407924 778 dbSNP
rs1229839365 779 dbSNP
rs1482194322 784 dbSNP
rs1295902426 789 dbSNP
rs1432354384 791 dbSNP
rs1407860071 799 dbSNP
rs1303123536 807 dbSNP
rs1465101241 808 dbSNP
rs961143434 812 dbSNP
rs937210783 826 dbSNP
rs991034703 827 dbSNP
rs1023385276 839 dbSNP
rs764239792 840 dbSNP
rs1389280601 842 dbSNP
rs754018701 844 dbSNP
rs1186453883 845 dbSNP
rs951777198 851 dbSNP
rs1180058099 852 dbSNP
rs1257109958 854 dbSNP
rs1411380123 855 dbSNP
rs1419871751 863 dbSNP
rs1161630047 875 dbSNP
rs1206446753 879 dbSNP
rs544681694 890 dbSNP
rs887721420 894 dbSNP
rs941941099 903 dbSNP
rs1341511010 907 dbSNP
rs371012093 909 dbSNP
rs1395139533 919 dbSNP
rs1376288829 926 dbSNP
rs1299419704 934 dbSNP
rs1410290877 941 dbSNP
rs574333569 941 dbSNP
rs984420414 942 dbSNP
rs1377743312 949 dbSNP
rs1368875094 950 dbSNP
rs1164320131 953 dbSNP
rs907549270 968 dbSNP
rs1018087085 973 dbSNP
rs940595292 977 dbSNP
rs1183002071 980 dbSNP
rs1305604431 989 dbSNP
rs897154881 993 dbSNP
rs1357465456 997 dbSNP
rs1391612323 998 dbSNP
rs1319561561 1013 dbSNP
rs1289619587 1014 dbSNP
rs1409893945 1015 dbSNP
rs1308617512 1016 dbSNP
rs1310091615 1029 dbSNP
rs1306076587 1046 dbSNP
rs757408615 1047 dbSNP
rs572168838 1049 dbSNP
rs1391132214 1050 dbSNP
rs151053517 1051 dbSNP
rs923241572 1052 dbSNP
rs1160263924 1062 dbSNP
rs1472286595 1077 dbSNP
rs931798701 1079 dbSNP
rs891199613 1083 dbSNP
rs1251154841 1087 dbSNP
rs1481038929 1090 dbSNP
rs1050262807 1096 dbSNP
rs1267035044 1121 dbSNP
rs7310 1122 dbSNP
rs1018446487 1128 dbSNP
rs1269624225 1131 dbSNP
rs764024836 1133 dbSNP
rs1043679214 1134 dbSNP
rs902543611 1136 dbSNP
rs1285939897 1137 dbSNP
rs999558445 1146 dbSNP
rs1035669895 1150 dbSNP
rs1428354588 1153 dbSNP
rs1331624896 1166 dbSNP
rs1390609416 1169 dbSNP
rs957493057 1169 dbSNP
rs1168573004 1178 dbSNP
rs746156027 1189 dbSNP
rs574863420 1199 dbSNP
rs1456932395 1206 dbSNP
rs1386488837 1212 dbSNP
rs758797745 1214 dbSNP
rs1175567068 1216 dbSNP
rs1478612171 1222 dbSNP
rs1377547950 1234 dbSNP
rs1197459441 1235 dbSNP
rs192785174 1238 dbSNP
rs1249089696 1240 dbSNP
rs1462003646 1243 dbSNP
rs1265633418 1261 dbSNP
rs967082987 1275 dbSNP
rs1012787724 1299 dbSNP
rs1345192050 1302 dbSNP
rs1274142962 1304 dbSNP
rs1299408606 1305 dbSNP
rs1365006403 1307 dbSNP
rs1023815362 1324 dbSNP
rs7814 1330 dbSNP
rs1298098107 1333 dbSNP
rs928426390 1334 dbSNP
rs1336465544 1338 dbSNP
rs984554446 1352 dbSNP
rs528035923 1357 dbSNP
rs552599134 1361 dbSNP
rs1401638647 1367 dbSNP
rs991314142 1367 dbSNP
rs763093235 1374 dbSNP
rs941847593 1375 dbSNP
rs1308017422 1379 dbSNP
rs1206653163 1381 dbSNP
rs962001138 1385 dbSNP
rs1188341598 1387 dbSNP
rs975806918 1389 dbSNP
rs576826568 1396 dbSNP
rs531829594 1397 dbSNP
rs34862874 1400 dbSNP
rs897725573 1401 dbSNP
rs930018945 1427 dbSNP
rs1198619255 1429 dbSNP
rs118091217 1435 dbSNP
rs1388621082 1444 dbSNP
rs772590998 1445 dbSNP
rs914420825 1447 dbSNP
rs891251390 1449 dbSNP
rs1006988539 1453 dbSNP
rs1039771621 1456 dbSNP
rs1339897346 1459 dbSNP
rs1447976972 1474 dbSNP
rs893327202 1475 dbSNP
rs946781521 1477 dbSNP
rs1412149987 1487 dbSNP
rs1371698744 1493 dbSNP
rs1168586908 1501 dbSNP
rs1428184203 1504 dbSNP
rs1043774397 1521 dbSNP
rs1164587003 1522 dbSNP
rs606357 1524 dbSNP
rs1306087372 1539 dbSNP
rs1020562709 1551 dbSNP
rs879398604 1553 dbSNP
rs1412164007 1554 dbSNP
rs1435004396 1556 dbSNP
rs1252449869 1558 dbSNP
rs532897043 1562 dbSNP
rs935323179 1565 dbSNP
rs968014443 1566 dbSNP
rs1229066720 1579 dbSNP
rs1002581255 1583 dbSNP
rs1282700353 1584 dbSNP
rs1460582717 1605 dbSNP
rs1230296021 1613 dbSNP
rs1351227556 1624 dbSNP
rs1056469275 1631 dbSNP
rs1326249051 1634 dbSNP
rs896695536 1642 dbSNP
rs114196166 1643 dbSNP
rs1324618545 1647 dbSNP
rs1405526946 1651 dbSNP
rs1045230407 1678 dbSNP
rs1432557563 1681 dbSNP
rs887927052 1685 dbSNP
rs547826608 1691 dbSNP
rs1412134380 1694 dbSNP
rs1014672739 1701 dbSNP
rs908939508 1708 dbSNP
rs666136 1710 dbSNP
rs774056351 1715 dbSNP
rs997552768 1719 dbSNP
rs759364584 1720 dbSNP
rs1450887176 1723 dbSNP
rs1271474341 1728 dbSNP
rs1210875176 1731 dbSNP
rs534051510 1745 dbSNP
rs919221850 1749 dbSNP
rs1227021877 1756 dbSNP
rs1370374901 1761 dbSNP
rs1276025438 1768 dbSNP
rs1436203548 1769 dbSNP
rs933226778 1776 dbSNP
rs1051654347 1778 dbSNP
rs1458511241 1784 dbSNP
rs558592898 1793 dbSNP
rs559810723 1794 dbSNP
rs78074980 1795 dbSNP
rs1463733072 1796 dbSNP
rs1427173709 1810 dbSNP
rs118166053 1811 dbSNP
rs529080192 1813 dbSNP
rs1039823977 1815 dbSNP
rs893212574 1818 dbSNP
rs914516929 1837 dbSNP
rs1465515047 1840 dbSNP
rs1267519544 1847 dbSNP
rs1476663173 1850 dbSNP
rs1180685118 1851 dbSNP
rs1410989947 1854 dbSNP
rs1213712686 1863 dbSNP
rs968512102 1872 dbSNP
rs1279918887 1873 dbSNP
rs780268434 1873 dbSNP
rs1219212269 1874 dbSNP
rs977261062 1880 dbSNP
rs1165027358 1882 dbSNP
rs1300304997 1883 dbSNP
rs1436744330 1885 dbSNP
rs1365492046 1892 dbSNP
rs903466525 1893 dbSNP
rs1419507284 1894 dbSNP
rs547900117 1895 dbSNP
rs1317331194 1896 dbSNP
rs1345618079 1902 dbSNP
rs1035862717 1903 dbSNP
rs76402643 1904 dbSNP
rs775473248 1911 dbSNP
rs556679279 1912 dbSNP
rs963457164 1917 dbSNP
rs971958135 1931 dbSNP
rs183765418 1933 dbSNP
rs1247641233 1935 dbSNP
rs1056837294 1941 dbSNP
rs542242035 1950 dbSNP
rs1327305905 1962 dbSNP
rs1238149642 1972 dbSNP
rs1228069228 1974 dbSNP
rs917941224 1976 dbSNP
rs879934734 1977 dbSNP
rs987812698 1982 dbSNP
rs1229583158 1984 dbSNP
rs948056519 1998 dbSNP
rs1045328292 2005 dbSNP
rs910442909 2008 dbSNP
rs1237354016 2011 dbSNP
rs1380657296 2015 dbSNP
rs760687300 2022 dbSNP
rs1187995185 2024 dbSNP
rs1039707877 2028 dbSNP
rs1006391115 2036 dbSNP
rs1170480714 2038 dbSNP
rs1430133605 2039 dbSNP
rs1389381897 2041 dbSNP
rs914698250 2044 dbSNP
rs1425817447 2046 dbSNP
rs1414543019 2060 dbSNP
rs1181368353 2061 dbSNP
rs1259052018 2068 dbSNP
rs1036534365 2069 dbSNP
rs1041768601 2074 dbSNP
rs1254589884 2074 dbSNP
rs1484765943 2074 dbSNP
rs947449063 2074 dbSNP
rs1250008056 2084 dbSNP
rs1471391170 2085 dbSNP
rs372820033 2097 dbSNP
rs1408431655 2101 dbSNP
rs938838172 2102 dbSNP
rs1232143209 2105 dbSNP
rs897537319 2107 dbSNP
rs548750709 2111 dbSNP
rs1173725094 2116 dbSNP
rs753803680 2121 dbSNP
rs1369678541 2129 dbSNP
rs894714603 2132 dbSNP
rs1374733605 2141 dbSNP
rs1369258915 2148 dbSNP
rs1030387333 2167 dbSNP
rs1415369146 2171 dbSNP
rs572360354 2173 dbSNP
rs1314810454 2186 dbSNP
rs1183482031 2202 dbSNP
rs1472553839 2220 dbSNP
rs1015876399 2222 dbSNP
rs546508394 2225 dbSNP
rs1441748641 2227 dbSNP
rs564600231 2231 dbSNP
rs568675665 2235 dbSNP
rs1212738486 2244 dbSNP
rs1353126612 2251 dbSNP
rs879060531 2257 dbSNP
rs1331972645 2274 dbSNP
rs1289718049 2276 dbSNP
rs1217784547 2282 dbSNP
rs1228864293 2292 dbSNP
rs543572937 2294 dbSNP
rs562249163 2299 dbSNP
rs1026041101 2302 dbSNP
rs1391240995 2309 dbSNP
rs1325412773 2310 dbSNP
rs1460098930 2312 dbSNP
rs1390840488 2322 dbSNP
rs968647432 2340 dbSNP
rs750684681 2341 dbSNP
rs924479717 2349 dbSNP
rs956979932 2351 dbSNP
rs1201693193 2352 dbSNP
rs1434102662 2355 dbSNP
rs199514014 2363 dbSNP
rs987289913 2369 dbSNP
rs992234531 2370 dbSNP
rs918023749 2373 dbSNP
rs1017555415 2378 dbSNP
rs1258987379 2379 dbSNP
rs1269416924 2380 dbSNP
rs1208796423 2385 dbSNP
rs1349415500 2387 dbSNP
rs1481823366 2389 dbSNP
rs1258862263 2400 dbSNP
rs1235354037 2402 dbSNP
rs948026666 2408 dbSNP
rs1302418156 2411 dbSNP
rs529787979 2416 dbSNP
rs1233053150 2418 dbSNP
rs914563617 2425 dbSNP
rs2077408 2426 dbSNP
rs942268693 2430 dbSNP
rs566498975 2449 dbSNP
rs1036909536 2453 dbSNP
rs977925250 2456 dbSNP
rs751985097 2458 dbSNP
rs147482748 2463 dbSNP
rs938874913 2473 dbSNP
rs1051510911 2474 dbSNP
rs552467172 2475 dbSNP
rs1445898110 2478 dbSNP
rs1409393298 2480 dbSNP
rs570620893 2485 dbSNP
rs1202043124 2486 dbSNP
rs1329647161 2488 dbSNP
rs1345643605 2491 dbSNP
rs1279592900 2493 dbSNP
rs781727024 2498 dbSNP
rs1231795748 2515 dbSNP
rs1344091197 2526 dbSNP
rs538047249 2544 dbSNP
rs188294448 2550 dbSNP
rs894766724 2552 dbSNP
rs948981650 2554 dbSNP
rs1434630435 2567 dbSNP
rs1375358562 2568 dbSNP
rs1021250250 2580 dbSNP
rs1303099640 2594 dbSNP
rs1372251179 2596 dbSNP
rs780841419 2598 dbSNP
rs1237133524 2601 dbSNP
rs1431983559 2603 dbSNP
rs745426009 2604 dbSNP
rs112066763 2606 dbSNP
rs775282966 2607 dbSNP
rs1037879532 2611 dbSNP
rs904418521 2613 dbSNP
rs898845050 2623 dbSNP
rs1474879113 2627 dbSNP
rs993149571 2634 dbSNP
rs1026511275 2639 dbSNP
rs1339317505 2645 dbSNP
rs998799756 2652 dbSNP
rs762767445 2654 dbSNP
rs1442561185 2655 dbSNP
rs1256679561 2656 dbSNP
rs1208697444 2668 dbSNP
rs1194702587 2670 dbSNP
rs1032027304 2687 dbSNP
rs1214137609 2691 dbSNP
rs7943660 2699 dbSNP
rs1286233032 2707 dbSNP
rs1245611369 2715 dbSNP
rs1354949383 2717 dbSNP
rs1439174730 2718 dbSNP
rs1008773389 2719 dbSNP
rs1252146291 2725 dbSNP
rs541205559 2726 dbSNP
rs1195282196 2735 dbSNP
rs1388195030 2743 dbSNP
rs964505368 2746 dbSNP
rs1475060908 2747 dbSNP
rs1025055171 2756 dbSNP
rs78916458 2757 dbSNP
rs545847620 2758 dbSNP
rs909225953 2762 dbSNP
rs1185663368 2770 dbSNP
rs1473535576 2771 dbSNP
rs942237442 2783 dbSNP
rs1403800360 2788 dbSNP
rs969133480 2791 dbSNP
rs1292259507 2792 dbSNP
rs977433530 2792 dbSNP
rs1395493524 2796 dbSNP
rs558440152 2797 dbSNP
rs919531496 2808 dbSNP
rs576284868 2819 dbSNP
rs992841217 2843 dbSNP
rs748678035 2849 dbSNP
rs1279551863 2853 dbSNP
rs1440430012 2858 dbSNP
rs770505646 2860 dbSNP
rs1325056173 2867 dbSNP
rs554305248 2874 dbSNP
rs1461666840 2889 dbSNP
rs1393014225 2890 dbSNP
rs1162189636 2891 dbSNP
rs1052404252 2895 dbSNP
rs1408620556 2905 dbSNP
rs1038372921 2912 dbSNP
rs920842861 2913 dbSNP
rs1248268928 2915 dbSNP
rs888828430 2917 dbSNP
rs943133694 2918 dbSNP
rs1042679968 2919 dbSNP
rs1271566489 2928 dbSNP
rs1210664637 2932 dbSNP
rs1270261824 2934 dbSNP
rs376660313 2937 dbSNP
rs1047388535 2942 dbSNP
rs1441113032 2945 dbSNP
rs778379113 2945 dbSNP
rs1008658651 2947 dbSNP
rs1323559395 2947 dbSNP
rs559871717 2957 dbSNP
rs1031579711 2958 dbSNP
rs1215289858 2960 dbSNP
rs1158229204 2961 dbSNP
rs1157092465 2964 dbSNP
rs530248526 2965 dbSNP
rs900353646 2969 dbSNP
rs768358822 2978 dbSNP
rs561987936 2980 dbSNP
rs895760018 2981 dbSNP
rs1022659575 2989 dbSNP
rs1190804612 2990 dbSNP
rs1014048810 3001 dbSNP
rs745492604 3007 dbSNP
rs774249709 3008 dbSNP
rs1314479389 3011 dbSNP
rs192374459 3022 dbSNP
rs959993263 3024 dbSNP
rs796082300 3031 dbSNP
rs1230193197 3041 dbSNP
rs75562591 3042 dbSNP
rs559964622 3046 dbSNP
rs1428110745 3050 dbSNP
rs1360820341 3054 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 28970.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_014039 | 3UTR | AGAGAAAAAGAAAAAUCAGUGUUUAGAAAUGUUGAUAGUUAUUGAAUCUUUGAAUUGAAUUUUAAAAAUCCAUUCUAGUAAUCAGAGUAUACUUUUUUUAUAGAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_014039 | 3UTR | UAUUGAAUCUUUGAAUUGAAUUUUAAAAAUCCAUUCUAGUAAUCAGAGUAUACUUUUUUUAUAGAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_014039 | 3UTR | AUGUUGAUAGUUAUUGAAUCUUUGAAUUGAAUUUUAAAAAUCCAUUCUAGUAAUCAGAGUAUACUUUUUUUAUAGAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_014039 | 3UTR | AAUUGAAUUUUAAAAAUCCAUUCUAGUAAUCAGAGUAUACUUUUUUUAUAGAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000528288.1 | 3UTR | UCUUAAAAAAAAAAUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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