pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol OSBPL5   
Synonyms OBPH1, ORP5
Description oxysterol binding protein like 5
Transcript NM_001144063   
Other Transcripts NM_020896 , NM_145638   
Expression
Putative miRNA Targets on OSBPL5
3'UTR of OSBPL5
(miRNA target sites are highlighted)
>OSBPL5|NM_001144063|3'UTR
   1 GAGCCCTGAGGGCAGAGCTCCTGGCCGGTCCTGAGCCCTCCCTCCCAGGCACCCAGCACTTTAAGCCTGCTCCATGGAGG
  81 CAGAGAGGCCCGGCAAGCACAGCCACTGTGACGGGGAGTCCAGGCGCAGGAGGGACCCGGGGCCACAAGGCGCTGCGGGC
 161 CCAGGTGTGCTGGGCCCCTCTCAGGGGCACTGGCCTCTCTGCAGGGCCTTCCGCCCAGCGCTGGCCTTAATGCTAAAGCC
 241 AAATGCAGCTTCTGCTGTGCGACGCACTCCTGGCCATCTTGCCGTGTCACCCCCTGTCCGGCCTCCACTTGCCATGGGGG
 321 ATGGATGGATTTAGGGTGGGAGGGCCTGTGGGGGCCCTGGACAGTCACACCCCAGCAGCAGTGAGTGGGCAGGTTTGGAG
 401 GAGCCCCGAGTGGCCCAGGAGTCCCCCCACACACAGATGCATAGGCCTGCCTTCCGGAGACCCTGTCCACATTGCCGGGA
 481 CCACCCTGGTGGGGCCACTGGTGGGTGCCAGGGACAGGTTAGGGCCACTCTGGGGAAGGCATTTTGGTTTTTTATTCCAC
 561 GCTGTGCTGTTTGGATGGGAGCCCCACAGAGGCAGGTCCTGGAACCACCCCACCCCCACACCTGGACGCTCGCTCTGGTG
 641 GGGGCACACGCAGGTGGAGGTGGTTGTGGGTGCAGGTGTGTGCAGGGGTGTGGGGGGCGCAGGGGTGTGGCTTAGCTGGC
 721 CCCGCACCCAGGCCGGGGAGGCTCAAGTTCGCCACTTTACTCAGACCGATGCACAGTCTTCCCATTTTACACTTTTTTAA
 801 TAAACATAATTGCAATATTTTAGGTGGGCTGCGAGCTGCAGTCAGCCTTCACGTCTGGCCTCAGTCCCCGTGTCAGTGCC
 881 GCTCTGCGTGTGCGTGTGCGCGTGTGTGAGCCTCTACACATATATATACGTACAGAGCCTTAAACCACATCGTGGCGGTG
 961 CCGTCTGAGCTGTAGCGGGTGGCTTTGTTTCCAGTTTTTGTACCCGTGTCCTTGTCTCCCCTCCTCCCCCATCTGGGGAT
1041 GTGTCTGTGTTCCACACCTTGAAATAAACAGACACATACGTGTTCTCTTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gggugguCGACGAG-GGACCGGGu 5'
                 |: |||:  ||||||| 
Target 5' caggggtGTGGCTTAGCTGGCCCc 3'
700 - 723 148.00 -17.80
2
miRNA  3' ggGU-GGUC-GACGAG-GGACCGGGu 5'
            || :||| || | | :||||||: 
Target 5' tgCAGTCAGCCTTCACGTCTGGCCTc 3'
837 - 862 141.00 -18.90
3
miRNA  3' gggugGUCGACGAGGGACCGGgu 5'
               |||  ||| |||||||  
Target 5' gagggCAG-AGCT-CCTGGCCgg 3'
8 - 28 136.00 -20.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN6609137 9 COSMIC
COSN8407256 27 COSMIC
COSN8407255 32 COSMIC
COSN31543160 72 COSMIC
COSN31597082 91 COSMIC
COSN18735873 113 COSMIC
COSN28817543 138 COSMIC
COSN20107869 148 COSMIC
COSN28648662 156 COSMIC
COSN22985823 162 COSMIC
COSN26586575 306 COSMIC
COSN17823617 366 COSMIC
COSN20107868 399 COSMIC
COSN32062332 399 COSMIC
COSN19665872 784 COSMIC
COSN26678479 832 COSMIC
COSN30734464 863 COSMIC
COSN26600901 887 COSMIC
COSN31534371 894 COSMIC
COSN31518138 900 COSMIC
COSN31532247 921 COSMIC
COSN28674065 929 COSMIC
COSN8442183 955 COSMIC
COSN8641488 1031 COSMIC
COSN4721576 1079 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1247172551 1 dbSNP
rs753994345 8 dbSNP
rs10160757 9 dbSNP
rs756383967 10 dbSNP
rs750551072 13 dbSNP
rs1438626776 18 dbSNP
rs767870881 20 dbSNP
rs1215251517 21 dbSNP
rs757682041 24 dbSNP
rs1228662911 25 dbSNP
rs1364096123 26 dbSNP
rs2289998 27 dbSNP
rs1229604338 29 dbSNP
rs183659677 29 dbSNP
rs386749871 30 dbSNP
rs955220595 31 dbSNP
rs2289999 32 dbSNP
rs374745376 33 dbSNP
rs760382184 35 dbSNP
rs772807630 36 dbSNP
rs771838749 39 dbSNP
rs370621936 40 dbSNP
rs1170630344 41 dbSNP
rs1450322978 42 dbSNP
rs1039347023 44 dbSNP
rs1389830342 45 dbSNP
rs1472864142 46 dbSNP
rs376129071 49 dbSNP
rs1409478428 50 dbSNP
rs1472173788 66 dbSNP
rs866529393 67 dbSNP
rs1370480457 70 dbSNP
rs1391633395 76 dbSNP
rs914382635 79 dbSNP
rs957247112 87 dbSNP
rs988685080 91 dbSNP
rs1395709721 92 dbSNP
rs1190858354 96 dbSNP
rs1477123402 98 dbSNP
rs1244780887 107 dbSNP
rs956738919 112 dbSNP
rs924031040 113 dbSNP
rs1438397789 116 dbSNP
rs905985928 118 dbSNP
rs569474271 123 dbSNP
rs1290354376 125 dbSNP
rs982081517 126 dbSNP
rs1014866145 128 dbSNP
rs12576154 129 dbSNP
rs1249454681 132 dbSNP
rs1418431790 134 dbSNP
rs971152737 135 dbSNP
rs1023657819 137 dbSNP
rs935431 138 dbSNP
rs113874430 139 dbSNP
rs1342418162 140 dbSNP
rs1048332382 142 dbSNP
rs1430423088 143 dbSNP
rs1309943822 147 dbSNP
rs1369206166 148 dbSNP
rs1335249787 151 dbSNP
rs3217567 151 dbSNP
rs397797486 151 dbSNP
rs1350467268 152 dbSNP
rs11553374 156 dbSNP
rs1417115236 157 dbSNP
rs568643632 158 dbSNP
rs1342445840 159 dbSNP
rs1229879500 162 dbSNP
rs1005008095 163 dbSNP
rs886154244 165 dbSNP
rs546602327 178 dbSNP
rs1258010689 183 dbSNP
rs1030057450 185 dbSNP
rs1413041731 187 dbSNP
rs1410439200 189 dbSNP
rs1182771366 196 dbSNP
rs997299933 197 dbSNP
rs1242692134 201 dbSNP
rs1160129957 208 dbSNP
rs528070881 211 dbSNP
rs564246824 212 dbSNP
rs947291215 213 dbSNP
rs551859793 218 dbSNP
rs115206979 219 dbSNP
rs563160103 220 dbSNP
rs1237605782 221 dbSNP
rs1208809540 235 dbSNP
rs1394589998 240 dbSNP
rs1336486407 243 dbSNP
rs986548063 246 dbSNP
rs923996540 247 dbSNP
rs1294733130 254 dbSNP
rs982172981 257 dbSNP
rs1285886921 258 dbSNP
rs554900522 260 dbSNP
rs916559453 261 dbSNP
rs990874663 263 dbSNP
rs1268552027 264 dbSNP
rs1465494386 267 dbSNP
rs963925466 269 dbSNP
rs1428053690 272 dbSNP
rs1199687525 275 dbSNP
rs1235688805 277 dbSNP
rs1016477571 283 dbSNP
rs536259570 284 dbSNP
rs192777402 293 dbSNP
rs1014353516 297 dbSNP
rs139159792 299 dbSNP
rs997668256 300 dbSNP
rs1456876935 305 dbSNP
rs900290268 307 dbSNP
rs1026486011 309 dbSNP
rs1329227829 319 dbSNP
rs1017651052 320 dbSNP
rs775200812 327 dbSNP
rs893031279 330 dbSNP
rs573168242 341 dbSNP
rs1414401221 342 dbSNP
rs1210805911 345 dbSNP
rs1180824429 348 dbSNP
rs369548815 352 dbSNP
rs575909269 352 dbSNP
rs1243302022 354 dbSNP
rs1053044495 356 dbSNP
rs1269582123 362 dbSNP
rs78899285 363 dbSNP
rs907019347 370 dbSNP
rs11824645 375 dbSNP
rs1045600471 381 dbSNP
rs1413146958 399 dbSNP
rs1266687891 401 dbSNP
rs113815620 405 dbSNP
rs71035475 405 dbSNP
rs200949076 406 dbSNP
rs1157381406 407 dbSNP
rs949496846 408 dbSNP
rs1051174537 409 dbSNP
rs1312608982 417 dbSNP
rs1294751340 423 dbSNP
rs933765580 427 dbSNP
rs1404253177 428 dbSNP
rs1364211039 429 dbSNP
rs546339470 432 dbSNP
rs575772575 438 dbSNP
rs377271450 441 dbSNP
rs1316503135 442 dbSNP
rs942048815 445 dbSNP
rs909241787 449 dbSNP
rs557620124 455 dbSNP
rs951002875 456 dbSNP
rs1253085972 458 dbSNP
rs923439221 459 dbSNP
rs1175800729 473 dbSNP
rs188722385 476 dbSNP
rs1350201490 477 dbSNP
rs969940967 484 dbSNP
rs1024316072 487 dbSNP
rs993197691 493 dbSNP
rs1372285125 498 dbSNP
rs950868946 501 dbSNP
rs1297369046 503 dbSNP
rs1026805759 514 dbSNP
rs994993567 516 dbSNP
rs963494248 521 dbSNP
rs1017702205 524 dbSNP
rs1245289912 526 dbSNP
rs964784744 540 dbSNP
rs1188623619 545 dbSNP
rs778692396 545 dbSNP
rs1011638031 557 dbSNP
rs1245787681 558 dbSNP
rs957006752 560 dbSNP
rs1050788369 561 dbSNP
rs17178177 564 dbSNP
rs796872737 564 dbSNP
rs1443660506 565 dbSNP
rs1220010046 566 dbSNP
rs553379963 567 dbSNP
rs998762585 568 dbSNP
rs770650392 576 dbSNP
rs1168613495 577 dbSNP
rs1391529995 582 dbSNP
rs907156735 583 dbSNP
rs1309722470 585 dbSNP
rs1169729619 586 dbSNP
rs1359690217 587 dbSNP
rs1449878150 605 dbSNP
rs535277875 606 dbSNP
rs891576850 609 dbSNP
rs1045933031 610 dbSNP
rs1012758989 613 dbSNP
rs1363348586 615 dbSNP
rs1305926454 617 dbSNP
rs753610915 622 dbSNP
rs1298383812 624 dbSNP
rs1441864900 626 dbSNP
rs570375989 627 dbSNP
rs935844042 628 dbSNP
rs184222058 631 dbSNP
rs1044216987 632 dbSNP
rs1460580885 635 dbSNP
rs942148831 637 dbSNP
rs1456378707 644 dbSNP
rs192899844 649 dbSNP
rs917150772 650 dbSNP
rs1428516071 656 dbSNP
rs569392705 674 dbSNP
rs929521041 676 dbSNP
rs923556160 678 dbSNP
rs558378133 685 dbSNP
rs1405136454 687 dbSNP
rs1469480104 687 dbSNP
rs950761189 693 dbSNP
rs1328439099 698 dbSNP
rs919370739 698 dbSNP
rs1367644569 699 dbSNP
rs976629120 700 dbSNP
rs371166875 702 dbSNP
rs529842161 703 dbSNP
rs963400999 705 dbSNP
rs762908224 711 dbSNP
rs1007645024 712 dbSNP
rs1281736155 720 dbSNP
rs1323354197 722 dbSNP
rs150763294 723 dbSNP
rs1481929068 724 dbSNP
rs1246835181 728 dbSNP
rs532406106 734 dbSNP
rs957139856 735 dbSNP
rs1053746 750 dbSNP
rs998523744 751 dbSNP
rs1161106987 753 dbSNP
rs904232895 755 dbSNP
rs546202637 767 dbSNP
rs917202325 768 dbSNP
rs1300409761 771 dbSNP
rs1301777855 772 dbSNP
rs1345441963 774 dbSNP
rs1024239087 775 dbSNP
rs1013139818 776 dbSNP
rs894296202 781 dbSNP
rs759759861 789 dbSNP
rs796788225 790 dbSNP
rs1308587143 791 dbSNP
rs769628284 794 dbSNP
rs973343661 813 dbSNP
rs1183658386 822 dbSNP
rs1361895255 824 dbSNP
rs1468764604 827 dbSNP
rs1368168735 830 dbSNP
rs1038645594 832 dbSNP
rs143123522 833 dbSNP
rs79511868 836 dbSNP
rs368145091 842 dbSNP
rs1365457654 843 dbSNP
rs1411031451 844 dbSNP
rs535397536 852 dbSNP
rs146546967 853 dbSNP
rs1441012338 860 dbSNP
rs1284367671 866 dbSNP
rs1361154357 867 dbSNP
rs542449457 869 dbSNP
rs773587050 870 dbSNP
rs1342754332 875 dbSNP
rs574943475 876 dbSNP
rs879894383 880 dbSNP
rs910710271 881 dbSNP
rs553503126 887 dbSNP
rs1243936003 888 dbSNP
rs904304892 893 dbSNP
rs535023565 894 dbSNP
rs1254464244 897 dbSNP
rs374306457 899 dbSNP
rs117001564 900 dbSNP
rs1012776280 901 dbSNP
rs187528308 901 dbSNP
rs895657209 901 dbSNP
rs552606097 902 dbSNP
rs546444778 904 dbSNP
rs1037706940 909 dbSNP
rs991414501 910 dbSNP
rs958912702 917 dbSNP
rs1249485200 921 dbSNP
rs143876464 921 dbSNP
rs1264831891 925 dbSNP
rs8813 929 dbSNP
rs986163222 929 dbSNP
rs1396083111 930 dbSNP
rs529750606 933 dbSNP
rs1429141413 934 dbSNP
rs111579557 949 dbSNP
rs565755329 951 dbSNP
rs773066122 952 dbSNP
rs547532453 954 dbSNP
rs569173632 956 dbSNP
rs745318395 957 dbSNP
rs778299445 961 dbSNP
rs59828116 962 dbSNP
rs552649850 963 dbSNP
rs1053750 965 dbSNP
rs557254405 969 dbSNP
rs748920898 972 dbSNP
rs1325766942 973 dbSNP
rs530917738 976 dbSNP
rs936166917 977 dbSNP
rs1202813740 980 dbSNP
rs1022613375 987 dbSNP
rs1013092331 998 dbSNP
rs1206921864 1000 dbSNP
rs376606260 1005 dbSNP
rs1471933344 1006 dbSNP
rs977149502 1011 dbSNP
rs1431882248 1014 dbSNP
rs757568610 1018 dbSNP
rs1176166337 1021 dbSNP
rs1363971319 1024 dbSNP
rs949873234 1026 dbSNP
rs1286581948 1028 dbSNP
rs541960981 1029 dbSNP
rs1254127427 1039 dbSNP
rs1304818837 1046 dbSNP
rs574842310 1079 dbSNP
rs958615672 1080 dbSNP
rs1037569532 1081 dbSNP
rs1465467664 1088 dbSNP
rs1241495525 1090 dbSNP
rs559731572 1094 dbSNP
rs1207875751 1095 dbSNP
rs983897368 1098 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 114879.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gggugguCGACGAG-GGACCgggu 5'
                 |: |||:  ||||    
Target 5' cagggguGUGGCUUAGCUGG---- 3'
12 - 31
2
miRNA  3' ggguggucgacgagggACCgggu 5'
                          |||    
Target 5' --------------ugUGGgggg 3'
1 - 9
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000478260.1 | 3UTR | UGUGGGGGGCGCAGGGGUGUGGCUUAGCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

Error report submission