miRTarBase - #MIRT526940


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pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CMSS1   
Synonyms C3orf26
Description cms1 ribosomal small subunit homolog (yeast)
Transcript NM_001167924   
Other Transcripts NM_032359   
Expression
Putative miRNA Targets on CMSS1
3'UTR of CMSS1
(miRNA target sites are highlighted)		 
>CMSS1|NM_001167924|3'UTR
   1 GTCTGTGTCCTAATGAAGATTCCAGTTTTCACAGTAGAAGTTGCATCTTATTTAATGACTCTGATACATTGCAAGCACTC
  81 AGTAAATATCAGCAAATAGTTTATGTTAATTGTGTCAACAGATGGATCACTGGAATGTGGGGATTCTGAAACAGAAATGA
 161 AACTGTCCTTTTGACAACTCTCTTATATAATAAAGTATCACCGGCTTGTGTATGATCCTTGTTGAGCGGACCGTGTTTTT
 241 CTGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auuAGGU-ACGUGUGUCCUCca 5'
             |||| | : ||||| ||  
Target 5' gatTCCAGTTTTCACAGTAGaa 3'
 18 - 39 110.00 -10.20
2 
miRNA  3' auUAG-GUACGUGUGUCCUcca 5'
            ||: || |||| ||| |   
Target 5' acATTGCAAGCACTCAGTAaat 3'
 66 - 87 95.00 -8.13
3 
miRNA  3' auUAGGUACGUGUGUCCUCCa 5'
            | :::||:  ||||  || 
Target 5' ttAATTGTGTCAACAGATGGa 3'
 106 - 126 91.00 -8.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM4613614 3 COSMIC
COSN30136413 7 COSMIC
COSN31512553 19 COSMIC
COSN30490718 23 COSMIC
COSN31561038 140 COSMIC
COSN16130134 160 COSMIC
COSN7720521 178 COSMIC
COSN31591886 203 COSMIC
COSN396249 351 COSMIC
COSN24985974 420 COSMIC
COSN20760404 476 COSMIC
COSN1284040 592 COSMIC
COSN24038083 1299 COSMIC
COSN21570731 1440 COSMIC
COSN21784988 1872 COSMIC
COSN15126666 2178 COSMIC
COSN9897193 2798 COSMIC
COSN19448266 2864 COSMIC
COSN1975846 2913 COSMIC
COSN25643453 3000 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs202027002 3 dbSNP
rs376887574 7 dbSNP
rs768638500 8 dbSNP
rs770432550 19 dbSNP
rs778636554 20 dbSNP
rs1450065875 21 dbSNP
rs1221195831 24 dbSNP
rs770536552 27 dbSNP
rs1481665629 28 dbSNP
rs1177259770 33 dbSNP
rs985565239 36 dbSNP
rs747883697 37 dbSNP
rs374802960 40 dbSNP
rs370189071 45 dbSNP
rs1165847609 52 dbSNP
rs901040039 63 dbSNP
rs1257358489 73 dbSNP
rs918835159 103 dbSNP
rs1329754508 108 dbSNP
rs774703654 110 dbSNP
rs1388244876 117 dbSNP
rs774976210 136 dbSNP
rs760100501 137 dbSNP
rs1243077878 143 dbSNP
rs1448477015 149 dbSNP
rs1469158155 166 dbSNP
rs1363909146 183 dbSNP
rs1183479609 184 dbSNP
rs1449533290 190 dbSNP
rs1265631063 196 dbSNP
rs192626161 203 dbSNP
rs775862021 204 dbSNP
rs1010712822 209 dbSNP
rs367705222 213 dbSNP
rs1227129873 215 dbSNP
rs904756526 223 dbSNP
rs1001822396 228 dbSNP
rs764271933 229 dbSNP
rs1329565924 233 dbSNP
rs754128670 234 dbSNP
rs1441338937 249 dbSNP
rs939017150 251 dbSNP
rs1400071398 252 dbSNP
rs1326776190 254 dbSNP
rs532001099 256 dbSNP
rs1384984561 268 dbSNP
rs59763622 272 dbSNP
rs116437192 273 dbSNP
rs1350339274 289 dbSNP
rs1235024987 312 dbSNP
rs558256817 313 dbSNP
rs1343429772 318 dbSNP
rs188544078 320 dbSNP
rs879177839 327 dbSNP
rs1207331353 333 dbSNP
rs1446943093 336 dbSNP
rs543064852 339 dbSNP
rs1022117714 348 dbSNP
rs1343023363 363 dbSNP
rs888980261 366 dbSNP
rs372744339 368 dbSNP
rs1235340513 390 dbSNP
rs1018388315 391 dbSNP
rs1429863280 393 dbSNP
rs975388363 394 dbSNP
rs1193665990 398 dbSNP
rs977163344 404 dbSNP
rs1374358587 407 dbSNP
rs1173827086 415 dbSNP
rs1436223385 418 dbSNP
rs922527084 419 dbSNP
rs933794167 422 dbSNP
rs1025684693 429 dbSNP
rs1052234028 430 dbSNP
rs913297419 447 dbSNP
rs1243179776 450 dbSNP
rs1196010287 453 dbSNP
rs1484709433 458 dbSNP
rs1464140126 459 dbSNP
rs946176688 464 dbSNP
rs1043438851 471 dbSNP
rs904556835 479 dbSNP
rs951701692 481 dbSNP
rs1213762154 485 dbSNP
rs1002191282 490 dbSNP
rs1056011093 491 dbSNP
rs896078175 492 dbSNP
rs879437063 493 dbSNP
rs754978186 500 dbSNP
rs1456456060 502 dbSNP
rs1025834804 506 dbSNP
rs200427220 512 dbSNP
rs1373417630 518 dbSNP
rs540688474 521 dbSNP
rs951091067 529 dbSNP
rs1300905067 533 dbSNP
rs1409720675 535 dbSNP
rs1420710240 540 dbSNP
rs1005329447 545 dbSNP
rs115896580 546 dbSNP
rs939149556 552 dbSNP
rs963783327 557 dbSNP
rs975494046 560 dbSNP
rs922497414 561 dbSNP
rs955312366 569 dbSNP
rs1329088578 571 dbSNP
rs1204135718 572 dbSNP
rs987916626 599 dbSNP
rs1207177358 605 dbSNP
rs1226479488 608 dbSNP
rs781088421 610 dbSNP
rs946117135 619 dbSNP
rs1469232341 620 dbSNP
rs1416075109 623 dbSNP
rs200747161 624 dbSNP
rs542115251 625 dbSNP
rs1355422082 626 dbSNP
rs1043676736 627 dbSNP
rs888926308 632 dbSNP
rs1417762261 640 dbSNP
rs1166355379 646 dbSNP
rs771567716 647 dbSNP
rs192833687 672 dbSNP
rs530958353 673 dbSNP
rs1176780406 674 dbSNP
rs1156624135 678 dbSNP
rs1481087883 679 dbSNP
rs1234328478 680 dbSNP
rs1211584481 681 dbSNP
rs1467912434 682 dbSNP
rs1273712237 698 dbSNP
rs1235095278 701 dbSNP
rs1314565065 706 dbSNP
rs1055816858 710 dbSNP
rs1305688411 713 dbSNP
rs1223933864 714 dbSNP
rs1396379960 720 dbSNP
rs1461800577 727 dbSNP
rs896046896 736 dbSNP
rs546204946 740 dbSNP
rs950301394 742 dbSNP
rs901244087 762 dbSNP
rs1463491202 773 dbSNP
rs1343446606 776 dbSNP
rs1047246216 777 dbSNP
rs371117627 780 dbSNP
rs374663180 784 dbSNP
rs112221178 791 dbSNP
rs1410420984 800 dbSNP
rs151012855 807 dbSNP
rs1453533510 809 dbSNP
rs951428594 810 dbSNP
rs1215423645 812 dbSNP
rs534200404 815 dbSNP
rs1005736226 823 dbSNP
rs899595492 830 dbSNP
rs547071128 831 dbSNP
rs559430470 832 dbSNP
rs1227074713 833 dbSNP
rs116127648 837 dbSNP
rs1233144387 841 dbSNP
rs1029309953 844 dbSNP
rs969495657 845 dbSNP
rs980898964 846 dbSNP
rs955279468 847 dbSNP
rs988052480 850 dbSNP
rs1360484234 858 dbSNP
rs1020742939 861 dbSNP
rs1288855308 864 dbSNP
rs1335905886 869 dbSNP
rs1347076942 878 dbSNP
rs529456975 890 dbSNP
rs1264439276 896 dbSNP
rs551306909 913 dbSNP
rs1395385573 927 dbSNP
rs1196990333 929 dbSNP
rs1426582601 931 dbSNP
rs987937158 932 dbSNP
rs979682563 933 dbSNP
rs569425708 940 dbSNP
rs1277599810 958 dbSNP
rs548808052 962 dbSNP
rs1179885015 964 dbSNP
rs1348156931 967 dbSNP
rs937441091 968 dbSNP
rs184785169 976 dbSNP
rs917282284 977 dbSNP
rs773916152 997 dbSNP
rs1342388970 998 dbSNP
rs199557635 1007 dbSNP
rs1414317725 1008 dbSNP
rs746319011 1008 dbSNP
rs1463745101 1012 dbSNP
rs1175819687 1021 dbSNP
rs766086425 1039 dbSNP
rs1369997130 1040 dbSNP
rs1408151410 1051 dbSNP
rs1170997665 1066 dbSNP
rs1430248397 1073 dbSNP
rs887358280 1085 dbSNP
rs1315335876 1093 dbSNP
rs1356676502 1096 dbSNP
rs776017639 1107 dbSNP
rs901706845 1115 dbSNP
rs1311066294 1129 dbSNP
rs1186596883 1135 dbSNP
rs1485746016 1140 dbSNP
rs1319498541 1144 dbSNP
rs1228991788 1148 dbSNP
rs1229130195 1149 dbSNP
rs558142350 1157 dbSNP
rs570083846 1159 dbSNP
rs941511214 1177 dbSNP
rs1337808678 1178 dbSNP
rs1251121002 1179 dbSNP
rs761025583 1185 dbSNP
rs1320618510 1198 dbSNP
rs1292043597 1203 dbSNP
rs112417063 1210 dbSNP
rs1202480119 1213 dbSNP
rs1356221935 1213 dbSNP
rs71625274 1214 dbSNP
rs78582416 1214 dbSNP
rs776186483 1215 dbSNP
rs887069194 1218 dbSNP
rs62285481 1220 dbSNP
rs552753544 1223 dbSNP
rs574614382 1225 dbSNP
rs890832500 1228 dbSNP
rs1009190946 1229 dbSNP
rs969610973 1235 dbSNP
rs1020793594 1241 dbSNP
rs1419429441 1248 dbSNP
rs112059405 1252 dbSNP
rs1250878700 1256 dbSNP
rs1196733685 1264 dbSNP
rs960918397 1265 dbSNP
rs1271794450 1269 dbSNP
rs1213657088 1271 dbSNP
rs1389847207 1284 dbSNP
rs979265117 1298 dbSNP
rs1237067909 1302 dbSNP
rs1033954038 1306 dbSNP
rs988272337 1314 dbSNP
rs1308044951 1316 dbSNP
rs958803026 1319 dbSNP
rs1392071250 1322 dbSNP
rs1325092369 1339 dbSNP
rs1427836688 1345 dbSNP
rs1392179048 1349 dbSNP
rs189343347 1350 dbSNP
rs1175606710 1352 dbSNP
rs1376554671 1353 dbSNP
rs1020703265 1354 dbSNP
rs180929225 1359 dbSNP
rs917250090 1371 dbSNP
rs1441889525 1378 dbSNP
rs949990455 1387 dbSNP
rs765751724 1388 dbSNP
rs908770839 1390 dbSNP
rs941634068 1398 dbSNP
rs1038525991 1400 dbSNP
rs1469305216 1402 dbSNP
rs1292722798 1408 dbSNP
rs910257611 1409 dbSNP
rs943255888 1414 dbSNP
rs976040379 1416 dbSNP
rs1242625350 1421 dbSNP
rs923076611 1428 dbSNP
rs921467181 1429 dbSNP
rs1302419931 1432 dbSNP
rs1441453007 1433 dbSNP
rs1316195004 1438 dbSNP
rs1332748110 1438 dbSNP
rs1225460644 1442 dbSNP
rs1399586931 1445 dbSNP
rs546092746 1446 dbSNP
rs564478429 1449 dbSNP
rs753249188 1452 dbSNP
rs1281878330 1455 dbSNP
rs573236717 1459 dbSNP
rs1193392374 1465 dbSNP
rs1478592991 1467 dbSNP
rs1047556895 1470 dbSNP
rs540763621 1477 dbSNP
rs1050763327 1481 dbSNP
rs776777156 1483 dbSNP
rs762102900 1484 dbSNP
rs1218997298 1489 dbSNP
rs1009158106 1492 dbSNP
rs1038314813 1493 dbSNP
rs1234723462 1513 dbSNP
rs1042464310 1516 dbSNP
rs903750954 1519 dbSNP
rs376050013 1524 dbSNP
rs1002382102 1527 dbSNP
rs1001219021 1547 dbSNP
rs1412451979 1556 dbSNP
rs1374459677 1562 dbSNP
rs1247574519 1574 dbSNP
rs562040776 1577 dbSNP
rs1035296149 1587 dbSNP
rs1033508629 1592 dbSNP
rs896605760 1595 dbSNP
rs529516936 1598 dbSNP
rs550877444 1599 dbSNP
rs142266930 1602 dbSNP
rs979206822 1609 dbSNP
rs971491313 1614 dbSNP
rs1017254042 1615 dbSNP
rs982764429 1620 dbSNP
rs1213856892 1622 dbSNP
rs1339985121 1623 dbSNP
rs1280078601 1628 dbSNP
rs533465411 1630 dbSNP
rs1454575599 1631 dbSNP
rs1354312121 1632 dbSNP
rs1313065286 1642 dbSNP
rs1449803322 1646 dbSNP
rs964395342 1647 dbSNP
rs376524409 1651 dbSNP
rs7619080 1655 dbSNP
rs1432419897 1672 dbSNP
rs974770105 1676 dbSNP
rs1173505187 1683 dbSNP
rs1474244881 1687 dbSNP
rs921531017 1694 dbSNP
rs751685337 1717 dbSNP
rs1473903063 1718 dbSNP
rs1231463746 1723 dbSNP
rs1367694260 1731 dbSNP
rs932788130 1735 dbSNP
rs1051217271 1743 dbSNP
rs1259874318 1744 dbSNP
rs929248876 1753 dbSNP
rs912287799 1754 dbSNP
rs1229610428 1759 dbSNP
rs983302826 1759 dbSNP
rs1278640367 1760 dbSNP
rs34029169 1760 dbSNP
rs397805623 1760 dbSNP
rs941435467 1761 dbSNP
rs1333900333 1764 dbSNP
rs1460353414 1775 dbSNP
rs945151969 1783 dbSNP
rs752746416 1784 dbSNP
rs570121846 1786 dbSNP
rs534307770 1788 dbSNP
rs111952804 1790 dbSNP
rs1406029994 1793 dbSNP
rs1176877380 1801 dbSNP
rs1440030117 1803 dbSNP
rs1267285982 1811 dbSNP
rs1191605768 1813 dbSNP
rs1467980199 1815 dbSNP
rs905178586 1816 dbSNP
rs1223099637 1819 dbSNP
rs938015763 1820 dbSNP
rs1057082882 1838 dbSNP
rs183915802 1852 dbSNP
rs903548656 1854 dbSNP
rs1240453640 1857 dbSNP
rs1215752080 1859 dbSNP
rs1311927922 1862 dbSNP
rs1439250994 1877 dbSNP
rs1000785006 1883 dbSNP
rs1294676053 1887 dbSNP
rs1055411179 1888 dbSNP
rs755955286 1890 dbSNP
rs1013403437 1917 dbSNP
rs1189555895 1918 dbSNP
rs1420552062 1926 dbSNP
rs1410708125 1927 dbSNP
rs1381864271 1935 dbSNP
rs1024838480 1936 dbSNP
rs1267936090 1948 dbSNP
rs1192883693 1960 dbSNP
rs1484580938 1967 dbSNP
rs568048463 1968 dbSNP
rs1216803232 1973 dbSNP
rs1158822148 1976 dbSNP
rs1277826555 1984 dbSNP
rs1232518378 1999 dbSNP
rs1010272067 2003 dbSNP
rs971460316 2009 dbSNP
rs757384515 2017 dbSNP
rs1015593604 2019 dbSNP
rs962995279 2043 dbSNP
rs1359881287 2046 dbSNP
rs535500874 2048 dbSNP
rs1297661545 2051 dbSNP
rs1350126119 2084 dbSNP
rs556898702 2085 dbSNP
rs1291319014 2090 dbSNP
rs921488226 2100 dbSNP
rs1378013574 2114 dbSNP
rs1178073424 2118 dbSNP
rs756965247 2137 dbSNP
rs986910597 2144 dbSNP
rs912759184 2146 dbSNP
rs1375382463 2148 dbSNP
rs945120723 2150 dbSNP
rs1418802094 2155 dbSNP
rs575463817 2156 dbSNP
rs1193743199 2158 dbSNP
rs539756044 2159 dbSNP
rs1254916660 2164 dbSNP
rs1209745019 2183 dbSNP
rs1483099793 2184 dbSNP
rs1256964200 2193 dbSNP
rs1352632712 2204 dbSNP
rs1306265138 2208 dbSNP
rs978282022 2209 dbSNP
rs1017370509 2213 dbSNP
rs925056785 2217 dbSNP
rs1342486131 2224 dbSNP
rs1311242026 2228 dbSNP
rs936298820 2238 dbSNP
rs964342085 2240 dbSNP
rs781449025 2244 dbSNP
rs1287688688 2247 dbSNP
rs1460329806 2247 dbSNP
rs778235993 2248 dbSNP
rs1171342607 2249 dbSNP
rs997184845 2250 dbSNP
rs1221845476 2252 dbSNP
rs1424032093 2256 dbSNP
rs1326808969 2258 dbSNP
rs1202530098 2259 dbSNP
rs1479891109 2261 dbSNP
rs745360136 2270 dbSNP
rs1234969928 2274 dbSNP
rs1290783650 2291 dbSNP
rs1199850412 2293 dbSNP
rs147819028 2294 dbSNP
rs1291519845 2298 dbSNP
rs1244243296 2300 dbSNP
rs1341284228 2309 dbSNP
rs1219408964 2313 dbSNP
rs1389435165 2315 dbSNP
rs1375913857 2324 dbSNP
rs573324335 2325 dbSNP
rs1331893306 2331 dbSNP
rs1234694617 2333 dbSNP
rs1467130209 2337 dbSNP
rs1391563830 2340 dbSNP
rs1030451108 2341 dbSNP
rs950646430 2345 dbSNP
rs1369816615 2346 dbSNP
rs949311997 2348 dbSNP
rs1046257322 2354 dbSNP
rs886312232 2357 dbSNP
rs1004722220 2363 dbSNP
rs141295559 2364 dbSNP
rs1209298751 2368 dbSNP
rs1476360473 2369 dbSNP
rs898595356 2369 dbSNP
rs1267409862 2382 dbSNP
rs1237180579 2388 dbSNP
rs1375795690 2399 dbSNP
rs1164204446 2403 dbSNP
rs1414021100 2404 dbSNP
rs1404421662 2409 dbSNP
rs1448803046 2416 dbSNP
rs995888567 2417 dbSNP
rs1322867573 2419 dbSNP
rs562242333 2420 dbSNP
rs1028303664 2422 dbSNP
rs574063803 2423 dbSNP
rs147007132 2436 dbSNP
rs762686807 2436 dbSNP
rs987046896 2439 dbSNP
rs1380597827 2443 dbSNP
rs1416318670 2445 dbSNP
rs1441978547 2446 dbSNP
rs1019735637 2453 dbSNP
rs1251640810 2453 dbSNP
rs868671365 2462 dbSNP
rs1269579550 2467 dbSNP
rs1226797409 2468 dbSNP
rs967239203 2474 dbSNP
rs1287085911 2488 dbSNP
rs771637290 2503 dbSNP
rs978289786 2504 dbSNP
rs1242023441 2505 dbSNP
rs1345518832 2512 dbSNP
rs1029591058 2525 dbSNP
rs954652589 2528 dbSNP
rs544662791 2531 dbSNP
rs35228533 2532 dbSNP
rs1233896712 2540 dbSNP
rs1342949748 2545 dbSNP
rs1332253092 2547 dbSNP
rs1315605321 2550 dbSNP
rs1398911510 2553 dbSNP
rs1360738323 2555 dbSNP
rs924994701 2558 dbSNP
rs1042681260 2576 dbSNP
rs936459755 2579 dbSNP
rs1423540597 2595 dbSNP
rs903986173 2601 dbSNP
rs1486958598 2610 dbSNP
rs1478647796 2619 dbSNP
rs1379952380 2621 dbSNP
rs1188621520 2628 dbSNP
rs1191584042 2634 dbSNP
rs1488032978 2636 dbSNP
rs990880341 2642 dbSNP
rs916285382 2646 dbSNP
rs1001043997 2647 dbSNP
rs949283244 2649 dbSNP
rs1484534104 2652 dbSNP
rs1277659878 2658 dbSNP
rs1237243531 2660 dbSNP
rs1347016192 2661 dbSNP
rs1268391851 2662 dbSNP
rs1217449161 2663 dbSNP
rs1340625955 2665 dbSNP
rs1279639891 2666 dbSNP
rs1412557237 2672 dbSNP
rs1039253830 2676 dbSNP
rs1333921170 2680 dbSNP
rs780525948 2690 dbSNP
rs1404957690 2697 dbSNP
rs189376913 2700 dbSNP
rs1424443586 2702 dbSNP
rs1029985678 2705 dbSNP
rs1471929770 2709 dbSNP
rs1237175077 2715 dbSNP
rs1210529505 2721 dbSNP
rs533309062 2722 dbSNP
rs551696137 2730 dbSNP
rs1317930906 2736 dbSNP
rs950447050 2738 dbSNP
rs1037560464 2743 dbSNP
rs1377974491 2745 dbSNP
rs1284477062 2753 dbSNP
rs898555725 2754 dbSNP
rs373355093 2755 dbSNP
rs979895352 2758 dbSNP
rs1334803416 2763 dbSNP
rs528117196 2776 dbSNP
rs114305328 2777 dbSNP
rs1403724250 2778 dbSNP
rs568021962 2780 dbSNP
rs1182691581 2787 dbSNP
rs1473626546 2788 dbSNP
rs535203377 2791 dbSNP
rs945373807 2792 dbSNP
rs553389295 2796 dbSNP
rs966997917 2801 dbSNP
rs1240013477 2804 dbSNP
rs1218719123 2808 dbSNP
rs1320637535 2810 dbSNP
rs1227708730 2812 dbSNP
rs978639884 2816 dbSNP
rs1290100775 2820 dbSNP
rs1229699914 2821 dbSNP
rs1042630687 2828 dbSNP
rs768944444 2835 dbSNP
rs550656839 2836 dbSNP
rs1446585053 2837 dbSNP
rs569115130 2840 dbSNP
rs1212874633 2842 dbSNP
rs1333996709 2851 dbSNP
rs958021250 2859 dbSNP
rs2316263 2865 dbSNP
rs1349389595 2866 dbSNP
rs916339064 2869 dbSNP
rs1201498339 2875 dbSNP
rs936946211 2876 dbSNP
rs1407303536 2880 dbSNP
rs1378774964 2883 dbSNP
rs1157816382 2897 dbSNP
rs1440138279 2898 dbSNP
rs1039202781 2900 dbSNP
rs970348382 2901 dbSNP
rs1246798910 2905 dbSNP
rs1487845834 2905 dbSNP
rs981787046 2906 dbSNP
rs900698224 2912 dbSNP
rs74476556 2913 dbSNP
rs940641106 2914 dbSNP
rs1051968032 2917 dbSNP
rs886066217 2919 dbSNP
rs1217988030 2920 dbSNP
rs1366912963 2922 dbSNP
rs1037925730 2924 dbSNP
rs1438778078 2934 dbSNP
rs150328727 2934 dbSNP
rs1358838389 2935 dbSNP
rs1297866851 2940 dbSNP
rs1004512403 2945 dbSNP
rs920473066 2946 dbSNP
rs1381965612 2948 dbSNP
rs1173796455 2950 dbSNP
rs1015914841 2959 dbSNP
rs931386270 2963 dbSNP
rs534055792 2965 dbSNP
rs1192406100 2974 dbSNP
rs1049758361 2976 dbSNP
rs889874261 2981 dbSNP
rs1261964681 2993 dbSNP
rs376413606 2995 dbSNP
rs563219605 2995 dbSNP
rs960164773 2998 dbSNP
rs1262866067 3003 dbSNP
rs1208552969 3006 dbSNP
rs1312114204 3010 dbSNP
rs1302650790 3014 dbSNP
rs555497066 3020 dbSNP
rs761895219 3021 dbSNP
rs1025490293 3024 dbSNP
rs182065601 3025 dbSNP
rs544387763 3029 dbSNP
rs1322340308 3032 dbSNP
rs1300849082 3055 dbSNP
rs999817541 3056 dbSNP
rs1032923056 3057 dbSNP
rs1295731194 3062 dbSNP
rs555836912 3063 dbSNP
rs1476524893 3081 dbSNP
rs1422304182 3084 dbSNP
rs137957421 3091 dbSNP
rs1234124537 3102 dbSNP
rs1274716667 3109 dbSNP
rs1478593643 3116 dbSNP
rs1012428569 3122 dbSNP
rs1253718887 3133 dbSNP
rs1343493771 3137 dbSNP
rs925298007 3155 dbSNP
rs186923088 3156 dbSNP
rs975006761 3157 dbSNP
rs761317056 3158 dbSNP
rs149035199 3159 dbSNP
rs933486870 3167 dbSNP
rs1219400730 3168 dbSNP
rs1051489208 3178 dbSNP
rs1310895872 3191 dbSNP
rs886180005 3194 dbSNP
rs940480592 3195 dbSNP
rs1037309034 3197 dbSNP
rs1463999679 3197 dbSNP
rs1207675592 3198 dbSNP
rs1170761999 3205 dbSNP
rs1466781087 3216 dbSNP
rs981756062 3218 dbSNP
rs1163678349 3233 dbSNP
rs1423552340 3236 dbSNP
rs1257321870 3242 dbSNP
rs1185893779 3251 dbSNP
rs907561953 3256 dbSNP
rs1001376159 3260 dbSNP
rs962262368 3261 dbSNP
rs1376959336 3263 dbSNP
rs895617643 3264 dbSNP
rs1244346403 3269 dbSNP
rs1477015340 3277 dbSNP
rs973382985 3280 dbSNP
rs1412402262 3284 dbSNP
rs1444371513 3285 dbSNP
rs1020158469 3286 dbSNP
rs920510859 3299 dbSNP
rs967178760 3313 dbSNP
rs931779511 3318 dbSNP
rs527999173 3328 dbSNP
rs1032315393 3331 dbSNP
rs911281495 3338 dbSNP
rs1458102302 3341 dbSNP
rs1386779846 3345 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 84319.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auuagguacgugugUCCUCCa 5'
                        :||||| 
Target 5' ----aggauggcugGGGAGGc 3'
 		1 - 17
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000421999.2 | 3UTR | AGGAUGGCUGGGGAGGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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