miRTarBase - #MIRT526973


—
pre-miRNA Information
pre-miRNA hsa-mir-4778   
Genomic Coordinates chr2: 66358249 - 66358328
Description Homo sapiens miR-4778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4778-3p
Sequence 51| UCUUCUUCCUUUGCAGAGUUGA |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs936001904 2 dbSNP
rs925922703 3 dbSNP
rs184768286 8 dbSNP
rs1249073833 10 dbSNP
rs977504360 13 dbSNP
rs192300002 18 dbSNP
Putative Targets

Gene Information
Gene Symbol PAX7   
Synonyms HUP1, PAX7B, RMS2
Description paired box 7
Transcript NM_001135254   
Other Transcripts NM_002584 , NM_013945   
Expression
Putative miRNA Targets on PAX7
3'UTR of PAX7
(miRNA target sites are highlighted)		 
>PAX7|NM_001135254|3'UTR
   1 GGCCCCTGGGGCGACTTGCCCCAGCCCAATTCCCAGCCCAACCCTAACTGACCCCTGAGCTTCCCAGCCTTGCCGCCTCA
  81 CCCCCCTGTTGTCCTAGGAGGCCAGGAAAGGAGCCCACCTGCTTCTCATCACCAGCCCCCTGGAGGTAGACAGCCAGCTT
 161 GTCACTCACCTGTGGTTAGGGATCCAGAGTGATGCCCTTGGAGTCTGCTCCCCACTTTCCCCAAGGAGGGTTTCTGGTCA
 241 GCCTGAGGTCCTCCCCTGTCAAATCCCATGGTGGCCTCTGTGCCATCTCAGGCATGGAGATTGGGGCCCACCTTGAACAC
 321 CTTGGGTGTCCAGAGGAGGATGGTGCCTGAGAGGAGGTCCTACAGCCCTTTGGACCCAACTCCAGTGGGGGCCCTAGCTA
 401 GAAGTGGAGGTGAAGCTTTCAGGGCTGCTCTCAGCTGGATGTACTGGGAGCCAGCCCTGCAAGGAGGGTCTCTGGCTCAG
 481 TGTCAGAACCACAGCCCTTTCCTCCTCTAGACATTGGGACTCCAGCAAAGAGGGGACCCTGGCCCTGGGGTCTTCCCAGG
 561 GGAGTCAGCAGGGGGGCAGTCTCACCCCCACCCAGGAATTTGAAGGACTTCAGAACCCTCCCCAGACACCTCTACTGGGT
 641 GCATGGGGAAATCTAGCACAGGCAGGGAGACTGGGGAGACCAGGAAGAGGCTTAACCAGAGGGTAGGGGCACATGGGGGT
 721 GGGGCTTGTCAGCCGTGGGCCCGCCCAGGATACAAGGACCCAACTCAGGCTTCTGGAAGCAGAGGGCTCTTATCCTGAAG
 801 CCCAAGTTCCCAGCATGTCCACTCCATCTGGGGCCTGGGGAGCCCACAGAACTTTTCAGTTTCCTTCATTAGCTGAATCA
 881 GATGAGATGGGGAGGGGATAAAGTCTTGAGGATACATGAGTGGAGGAGCAGGAAGTGGGCTCAGAAGGCACTTTCATAAC
 961 CAGATCCCTCTGTTTGTGGGAGGGCAAGCCTTTGTTGCCCAAGGCTTCAGCTCTCTGCCTGCAAGTCCACACCCCAGGGA
1041 GTTGAGATTTTGCCCAAAGCCTTCCGCAGAGGCCCGAGCCCATCCTTACCATGCCCCATCCTCTAGGAAGAGGTCTCCAT
1121 CTTCCCCAAACCCCTTTCAGTTTGTGGGGATGCAGAGAGCTACCCTCAGAGCTTTGGAGGAGGGTTGTAGACTGGGCAGG
1201 GATGGTTTGCCCCACAGACAAGATGATCCCCCCTGGCATGTTGTTAGGGGCAAATTGCTGTCCTGCTCAGAGTGGCATCT
1281 TTCAATGTTGCCTCCATCTTGGCCAAGAGGTCCCTGCCTCCTGATCCGGCACAGCTGAGCTGAGGCAGATGTGACCAGTT
1361 TTCAAGCTACCAGCCCTGGGCAGAGGAAGATGTCAACAATTCCAGAGCAGAGGGAAGAGGCACCTTCCTTGACCACACCA
1441 GTGGCCTCCTGAAGTTCCATGCTTTTAAGAGCTGGGACCTTGGGAGGATGATTCAAACCCTCAATTCCTCCTCCCTGGGA
1521 ACTTTTTACCACCTTTACCTATTTATCAAAATCATATTCATCTTTACCATCACTGTCACTGTAATCTACATTCCATCACC
1601 TTTATCAGGTGCTGCTGAGTACAAAGCACTTGGGATGGGAGACACAGCACTGAATTCACAAACATTGGACCAAACTGTTT
1681 GTCCCCATCTGGGTTCATGAGGCCACCTCTTTGCTCAATCCATGCCTCTTGCCCTCAGTCAACAAGACATTCCTAGAGGG
1761 AAAGGGCTGCTGCTCTGGGAGTCAACCTGAGTTCCTCCCTCCTGGGAAGCTGGGTTGGCAAGATTCTAGGACACTCACCT
1841 GCATGGACATCACCTCTGTGACAAATGCTTACCTGTTTCTCATCTTCAGACTTGGCGATATCAAGCCTGTTCTGGACCAT
1921 GACCAGGCTGGCTCATATCTCTGGTTTAGAGAAACCTATGAATAACTGGGGACAAACAGACTCTTTGGTAGCAGCAGACA
2001 CATGTGATCCATCAAGATCAACCAAGGTTGCAACTGGAGCGTCCACTGCCAGAGACCTTTGGCTCTTCAAGCTCGGGACA
2081 AAAAAGAAGACTCTGTTGTCCCTTGGTAACCCAGTCCCTGCTTTTGTAGCTATCACAGCAGAAAGCAACTCTTCCTGAAG
2161 ACCAAACACTCGTCATCCACATTCCTTGAATGGCCAATCCTTCCATCTGGAGGCCTGGCTCAGAAAGTATCTGAGTATCC
2241 TGACACCCTCTGTGACTCAGGAGCAGGGATCTCAGGCAGCTGATATCAAAACCACCCAGCCCCATCCCCAGGAGGCGACA
2321 TTCCAATGCTAGGACCAATCCCAGATATCTGGTCCCGATGGTGAAATGGAACAAAGACCTGCTTGGGAATAAACCAAATG
2401 ATTTCTCATGACGTTGAACATAAGTTCTCCCAAGCCATCATCTTGGTAGAAAATGGGACTTATTCCTTGACAGGCCCCAC
2481 CCCCTTCAGAAAGAGGCCCTTGACCCTGATAGGTTCTCTCTAAAACCCGTATATTAACGCATCTGGCCAACTTGGGTTAT
2561 AAAATTCAGCCTTGTGTTGGCAACTCGAAACATCACCAGAGAGGTGATGTTGAATGAGAGACACAAGGCCTCCATCTCTT
2641 TGGGGCTGACCACAGCCTGAGAAAGAAGGTCTGGGTTCCAGTGGCCAGGCCGTCCCAGAAACAACCCCCATCCATCCCTG
2721 TAAATAGAGTCTGTAGCAAAATAAGAGCTGCTTCCTCCAACTTATCACAAGTCGCCGTTGGTCCTCTCTAAGGAGGGCTC
2801 TCTTCTGAGTTCATTGTACAATAGTTGGAAACGTGGTGATGTGCTGTTCGTTTATAGAAAGCTGACTTTTTATAAATATA
2881 TATATATACTAAAAAAGGAAAGAAATCCCCCACAGTGTGTGTCGTGCTAGTGCCAGAGACCATCTGTAGGGATATATCTT
2961 CATATTGTGTGTTTCAAATTATGCATTCCAGGCTCTAGTGGGTTCTTTCAATCTTGTTCCTTTATTTTTTTCATTTGGTA
3041 TTTCTCTCTTGCTATATAAAGAAAAAAAGAAGTGATGTGTAAGAACCAAGCTATGCTTTTATACTTCCATTTTATACTTG
3121 ATTTAGCTTTGTTGTTCTTTTGCCAGAGGAACATCAAAGGGCAGAGCAAACAGAGAACTAGGGGGATAAGAGAGAAGAAA
3201 AGAAGAATGGAGAGAGAGGTTTGCCCAGAAGGAAAACGAAGAGCCAGATTGAAATCTGACTCTGGCTTGAGAACAGGACG
3281 GGTCCCAGAGTTTGACCACTGCCAGAATCCAGTGTTTCAAGATGGAGTTGGTGAAGCATCCAAGATTTTGGATCCTGGGC
3361 CTCAGTGACACTCCATCACCCAACTAAAAAGATGTTCTCTGGGACCTCTCTCAGGCTGATGTTCTTCTCATCAAGCTCCC
3441 GAATGTGTCTCGCACTATTGGACACTTTTTGGGGGTACACAGGTCTTCTCTCCTCCCCTCCTGCAGAGGCACCAAAACCA
3521 AGACCAAATGGGGGTTCTCTAGCCGCCAACTTGAAACGCTCTGAGACTTCTGTGTATTTGATGCTTCTTCAAGTCAGCTC
3601 TGACGTGGCCAATTCCCTGACCTGGGAAATATTTACATAGTACTCTAGATCATTCCTTCTTCCTAGTAACTGCAACTTTG
3681 TTGCTTCTGTGTTTGACTCACAGCCACTTTCCCCCATGCGGAAGTGAGTGGGTGTACGTGAGGGTGTGAGTGGGGTGTGT
3761 GCGTGGGCGTGTGGGCGTGAGGTGTGTGTTTAAATATAATCACACCATAATTTATTCAGCTATATGGAGTAGTAGACTAG
3841 AAAGAGAAACTGGTATTTGCTTTAACTACCTGCTGCTTGTAAGCGCTTCCTCTGTAACTCAGGCGTAACTGTTATACATT
3921 AAAAGAAATTAAAAGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agUUGAG---ACGU-UUCCUUCUUCu 5'
            ||:||    ||| |:||||||:| 
Target 5' acAATTCCAGAGCAGAGGGAAGAGGc 3'
 1396 - 1421 148.00 -20.20
2 
miRNA  3' agUUGAGA--CGUUUCCUUCUUCu 5'
            |:| ||  |||:||||||| | 
Target 5' ccAGCCCTGGGCAGAGGAAGATGt 3'
 1370 - 1393 142.00 -19.20
3 
miRNA  3' agUUGAGACGUU---UCCUUCUUCu 5'
            :|||  | |:   |||||||:| 
Target 5' gaGACTGGGGAGACCAGGAAGAGGc 3'
 667 - 691 140.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN229170 13 COSMIC
COSN31562879 69 COSMIC
COSN30138976 76 COSMIC
COSN30533833 102 COSMIC
COSN8413680 230 COSMIC
COSN30163494 261 COSMIC
COSN20090167 412 COSMIC
COSN32057537 443 COSMIC
COSN24294611 588 COSMIC
COSN27668145 787 COSMIC
COSN26337131 818 COSMIC
COSN9054357 1013 COSMIC
COSN8413687 1054 COSMIC
COSN30016975 1203 COSMIC
COSN32056182 1328 COSMIC
COSN29140213 1460 COSMIC
COSN1421417 1463 COSMIC
COSN22461191 1503 COSMIC
COSN28200949 1661 COSMIC
COSN15910017 1866 COSMIC
COSN23287649 2057 COSMIC
COSN31960188 2554 COSMIC
COSN1421430 2587 COSMIC
COSN8413695 2633 COSMIC
COSN23276058 2693 COSMIC
COSN15369810 2851 COSMIC
COSN20716870 2865 COSMIC
COSN15290521 2959 COSMIC
COSN7192464 3456 COSMIC
COSN14930806 3597 COSMIC
COSN62359 3755 COSMIC
COSN31960189 3906 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs542855475 1 dbSNP
rs751360500 3 dbSNP
rs1433727855 6 dbSNP
rs1295655139 7 dbSNP
rs1049642471 8 dbSNP
rs1230573538 13 dbSNP
rs561158639 14 dbSNP
rs369534319 15 dbSNP
rs1225074300 19 dbSNP
rs1266168008 22 dbSNP
rs1018860671 24 dbSNP
rs748245200 25 dbSNP
rs1334248376 27 dbSNP
rs1205854661 35 dbSNP
rs1263945050 38 dbSNP
rs756281666 42 dbSNP
rs996863750 44 dbSNP
rs1450128896 45 dbSNP
rs777699496 49 dbSNP
rs990319992 51 dbSNP
rs540243275 63 dbSNP
rs568878669 69 dbSNP
rs775662586 75 dbSNP
rs977760922 76 dbSNP
rs371247402 81 dbSNP
rs927648493 81 dbSNP
rs1310447479 83 dbSNP
rs899274277 86 dbSNP
rs1461201767 87 dbSNP
rs1172897891 95 dbSNP
rs1377052021 96 dbSNP
rs532422604 98 dbSNP
rs551005596 99 dbSNP
rs1055477046 100 dbSNP
rs916490114 103 dbSNP
rs1214860167 110 dbSNP
rs1297852139 111 dbSNP
rs142024760 112 dbSNP
rs1026293263 114 dbSNP
rs530221075 116 dbSNP
rs886526979 118 dbSNP
rs192614253 119 dbSNP
rs1280221123 120 dbSNP
rs1004886945 128 dbSNP
rs1259085099 133 dbSNP
rs1427497726 136 dbSNP
rs1196424111 137 dbSNP
rs566799183 138 dbSNP
rs1317790939 139 dbSNP
rs1432036669 141 dbSNP
rs866854713 144 dbSNP
rs1172819444 151 dbSNP
rs1345669240 158 dbSNP
rs1176233500 163 dbSNP
rs1290645692 166 dbSNP
rs1009146373 167 dbSNP
rs996173165 175 dbSNP
rs1417526086 176 dbSNP
rs761462605 183 dbSNP
rs534252432 186 dbSNP
rs552612865 190 dbSNP
rs1303169354 191 dbSNP
rs1019248828 211 dbSNP
rs1401621004 223 dbSNP
rs1218575314 225 dbSNP
rs964858372 227 dbSNP
rs1366892728 238 dbSNP
rs767118336 245 dbSNP
rs1302115930 254 dbSNP
rs1452215356 276 dbSNP
rs1314139337 284 dbSNP
rs184483426 291 dbSNP
rs1192718954 293 dbSNP
rs1033608825 298 dbSNP
rs957120991 302 dbSNP
rs111380199 306 dbSNP
rs139237314 308 dbSNP
rs1219268804 309 dbSNP
rs971070328 312 dbSNP
rs1245475418 313 dbSNP
rs1396913507 314 dbSNP
rs190401960 321 dbSNP
rs1034751764 323 dbSNP
rs1010113 330 dbSNP
rs536447968 337 dbSNP
rs552443953 338 dbSNP
rs919770028 347 dbSNP
rs930704387 353 dbSNP
rs1177546244 357 dbSNP
rs753800946 358 dbSNP
rs1466815115 376 dbSNP
rs930537430 386 dbSNP
rs573128015 387 dbSNP
rs778772149 392 dbSNP
rs1008928460 393 dbSNP
rs1040459954 395 dbSNP
rs1040638388 398 dbSNP
rs900724172 404 dbSNP
rs1165686530 410 dbSNP
rs181266355 411 dbSNP
rs540492013 412 dbSNP
rs565035809 420 dbSNP
rs893387468 421 dbSNP
rs577126675 436 dbSNP
rs1444665455 437 dbSNP
rs1444774170 440 dbSNP
rs12126398 443 dbSNP
rs760198897 449 dbSNP
rs1009932643 451 dbSNP
rs1020546944 461 dbSNP
rs1020030069 469 dbSNP
rs1232215475 470 dbSNP
rs971018382 479 dbSNP
rs1308937602 481 dbSNP
rs1034782788 490 dbSNP
rs1232114240 497 dbSNP
rs1485925354 498 dbSNP
rs960465999 503 dbSNP
rs1288219460 511 dbSNP
rs56860545 512 dbSNP
rs778116697 515 dbSNP
rs34080884 516 dbSNP
rs958623625 517 dbSNP
rs1222891157 520 dbSNP
rs1411888240 523 dbSNP
rs747122933 524 dbSNP
rs1370339612 531 dbSNP
rs2841044 545 dbSNP
rs1315339051 546 dbSNP
rs1177527415 550 dbSNP
rs1354171347 551 dbSNP
rs867737934 554 dbSNP
rs1238402335 570 dbSNP
rs1446615882 571 dbSNP
rs1270305355 572 dbSNP
rs919734389 573 dbSNP
rs1212457951 586 dbSNP
rs1273567638 588 dbSNP
rs577113511 592 dbSNP
rs1412736557 599 dbSNP
rs1047826896 601 dbSNP
rs1278060378 602 dbSNP
rs1485321687 603 dbSNP
rs1424206735 614 dbSNP
rs1166751088 617 dbSNP
rs940557119 621 dbSNP
rs1398046853 627 dbSNP
rs975859155 627 dbSNP
rs1464122636 629 dbSNP
rs907989496 630 dbSNP
rs1435706140 631 dbSNP
rs944788722 632 dbSNP
rs1175967184 637 dbSNP
rs1374137796 645 dbSNP
rs1330849323 647 dbSNP
rs1318342700 652 dbSNP
rs1346462089 660 dbSNP
rs923367449 672 dbSNP
rs1371328526 683 dbSNP
rs1236170784 691 dbSNP
rs1444698968 700 dbSNP
rs1301007219 707 dbSNP
rs1040374712 710 dbSNP
rs1205646274 726 dbSNP
rs900505449 735 dbSNP
rs560281507 736 dbSNP
rs1055151279 740 dbSNP
rs893176935 741 dbSNP
rs893301286 743 dbSNP
rs149565983 744 dbSNP
rs1393672975 750 dbSNP
rs1019977899 751 dbSNP
rs552792029 752 dbSNP
rs1410879739 756 dbSNP
rs903409053 756 dbSNP
rs770137181 757 dbSNP
rs116061259 764 dbSNP
rs1442667082 771 dbSNP
rs1323564321 777 dbSNP
rs562583436 780 dbSNP
rs1239571272 785 dbSNP
rs186572332 790 dbSNP
rs550352973 791 dbSNP
rs568952752 794 dbSNP
rs1197423707 803 dbSNP
rs1033978253 810 dbSNP
rs1458728885 817 dbSNP
rs1469033298 818 dbSNP
rs1215793970 819 dbSNP
rs958621337 821 dbSNP
rs1451383644 823 dbSNP
rs1183048745 826 dbSNP
rs1366015530 827 dbSNP
rs763255204 837 dbSNP
rs1012030552 840 dbSNP
rs1462619299 842 dbSNP
rs1027342030 843 dbSNP
rs1196879957 867 dbSNP
rs951234786 869 dbSNP
rs982586402 875 dbSNP
rs912417855 883 dbSNP
rs530360582 889 dbSNP
rs144097711 895 dbSNP
rs1333859809 896 dbSNP
rs764535480 903 dbSNP
rs976174088 908 dbSNP
rs1287735763 916 dbSNP
rs921949350 919 dbSNP
rs771763662 921 dbSNP
rs1170030050 926 dbSNP
rs1005828562 937 dbSNP
rs1263883832 940 dbSNP
rs1424364825 943 dbSNP
rs1014806526 953 dbSNP
rs189014993 965 dbSNP
rs760234735 966 dbSNP
rs946313018 975 dbSNP
rs923164426 982 dbSNP
rs372504530 983 dbSNP
rs180893661 985 dbSNP
rs765924875 990 dbSNP
rs148690986 991 dbSNP
rs914628984 991 dbSNP
rs1041718769 995 dbSNP
rs1339060628 998 dbSNP
rs1034546093 999 dbSNP
rs753219378 1004 dbSNP
rs1428951544 1019 dbSNP
rs77648499 1033 dbSNP
rs1279418271 1039 dbSNP
rs938879533 1040 dbSNP
rs142245975 1043 dbSNP
rs1201395391 1057 dbSNP
rs147822236 1059 dbSNP
rs1277464125 1060 dbSNP
rs74056094 1066 dbSNP
rs765032042 1067 dbSNP
rs887500063 1074 dbSNP
rs1260829684 1075 dbSNP
rs982701059 1077 dbSNP
rs1194878790 1091 dbSNP
rs1019427188 1096 dbSNP
rs1448623966 1114 dbSNP
rs1174074914 1126 dbSNP
rs574505057 1127 dbSNP
rs752584967 1132 dbSNP
rs1301091637 1134 dbSNP
rs1453028585 1135 dbSNP
rs1401574851 1147 dbSNP
rs961681644 1149 dbSNP
rs1170958640 1154 dbSNP
rs1297968415 1158 dbSNP
rs1424683592 1160 dbSNP
rs1228071799 1166 dbSNP
rs1304658540 1171 dbSNP
rs1415303283 1175 dbSNP
rs758234493 1178 dbSNP
rs1208648026 1182 dbSNP
rs1255993917 1187 dbSNP
rs569172704 1203 dbSNP
rs1175782835 1210 dbSNP
rs778204543 1211 dbSNP
rs541896020 1214 dbSNP
rs1464187025 1220 dbSNP
rs866195223 1229 dbSNP
rs990525347 1233 dbSNP
rs1431291466 1234 dbSNP
rs560218887 1234 dbSNP
rs1175250810 1236 dbSNP
rs1364360939 1237 dbSNP
rs796562542 1238 dbSNP
rs1322677974 1244 dbSNP
rs1386663972 1247 dbSNP
rs142337997 1270 dbSNP
rs751821121 1276 dbSNP
rs1373642552 1279 dbSNP
rs914682808 1281 dbSNP
rs914594366 1284 dbSNP
rs968752436 1297 dbSNP
rs1240518822 1302 dbSNP
rs1265709163 1307 dbSNP
rs1327956165 1310 dbSNP
rs1213922436 1314 dbSNP
rs1254553424 1319 dbSNP
rs757366029 1326 dbSNP
rs527848106 1328 dbSNP
rs907372897 1351 dbSNP
rs1235983730 1356 dbSNP
rs552538546 1357 dbSNP
rs2743184 1367 dbSNP
rs745898826 1368 dbSNP
rs894188533 1369 dbSNP
rs995285956 1370 dbSNP
rs376690226 1373 dbSNP
rs886784649 1374 dbSNP
rs139702125 1381 dbSNP
rs1412225733 1382 dbSNP
rs12722940 1386 dbSNP
rs749695633 1393 dbSNP
rs1196813567 1397 dbSNP
rs145111409 1400 dbSNP
rs147594508 1402 dbSNP
rs1220491550 1403 dbSNP
rs1319584383 1403 dbSNP
rs1251684813 1408 dbSNP
rs953561471 1410 dbSNP
rs528820197 1421 dbSNP
rs1179922074 1423 dbSNP
rs1251064339 1437 dbSNP
rs1036067972 1438 dbSNP
rs1188804819 1441 dbSNP
rs186140439 1446 dbSNP
rs760378188 1460 dbSNP
rs1416182429 1463 dbSNP
rs1403839826 1465 dbSNP
rs1316149893 1467 dbSNP
rs914540031 1473 dbSNP
rs967385267 1476 dbSNP
rs1432073685 1477 dbSNP
rs897520390 1482 dbSNP
rs997578819 1501 dbSNP
rs485874 1504 dbSNP
rs1285470143 1510 dbSNP
rs928920188 1513 dbSNP
rs1227390795 1516 dbSNP
rs889009475 1523 dbSNP
rs866379552 1534 dbSNP
rs1202823438 1544 dbSNP
rs1273791623 1565 dbSNP
rs1387739539 1572 dbSNP
rs1211629323 1574 dbSNP
rs1485978586 1574 dbSNP
rs566611112 1580 dbSNP
rs1323510955 1581 dbSNP
rs1331145125 1584 dbSNP
rs1442472714 1586 dbSNP
rs938960906 1598 dbSNP
rs1056345132 1601 dbSNP
rs571467800 1605 dbSNP
rs776226448 1611 dbSNP
rs140671556 1627 dbSNP
rs968530412 1631 dbSNP
rs1435895600 1638 dbSNP
rs1335539882 1640 dbSNP
rs977540096 1642 dbSNP
rs1240561159 1650 dbSNP
rs1446728767 1653 dbSNP
rs1048178384 1671 dbSNP
rs1031739863 1672 dbSNP
rs558497804 1673 dbSNP
rs993207638 1678 dbSNP
rs1354016594 1680 dbSNP
rs560970853 1690 dbSNP
rs1003906764 1703 dbSNP
rs1040968179 1705 dbSNP
rs916183005 1710 dbSNP
rs948944293 1719 dbSNP
rs1440745785 1721 dbSNP
rs1209553142 1723 dbSNP
rs1466440027 1726 dbSNP
rs1290510737 1727 dbSNP
rs531536782 1728 dbSNP
rs1389949740 1738 dbSNP
rs1455029278 1740 dbSNP
rs984312229 1744 dbSNP
rs901060066 1750 dbSNP
rs570707563 1754 dbSNP
rs940175590 1761 dbSNP
rs1236578360 1762 dbSNP
rs537712383 1765 dbSNP
rs550938270 1766 dbSNP
rs742072 1768 dbSNP
rs550634875 1774 dbSNP
rs569041273 1775 dbSNP
rs1007925311 1776 dbSNP
rs1392102535 1780 dbSNP
rs1012066772 1781 dbSNP
rs904379558 1789 dbSNP
rs752674880 1807 dbSNP
rs190804966 1814 dbSNP
rs1328732855 1815 dbSNP
rs1021702660 1816 dbSNP
rs1399064175 1820 dbSNP
rs998672685 1831 dbSNP
rs1446996491 1833 dbSNP
rs1031772299 1839 dbSNP
rs960375543 1844 dbSNP
rs541832698 1848 dbSNP
rs967331403 1849 dbSNP
rs977365568 1850 dbSNP
rs1243813310 1855 dbSNP
rs1394807875 1863 dbSNP
rs553841423 1872 dbSNP
rs1321366491 1880 dbSNP
rs567519408 1883 dbSNP
rs1330390413 1892 dbSNP
rs79437989 1897 dbSNP
rs76368154 1898 dbSNP
rs991766102 1903 dbSNP
rs763996791 1904 dbSNP
rs1357362054 1906 dbSNP
rs1211957467 1908 dbSNP
rs770485754 1910 dbSNP
rs1288189193 1913 dbSNP
rs1451474541 1920 dbSNP
rs1183534964 1923 dbSNP
rs1254650530 1923 dbSNP
rs1256291769 1924 dbSNP
rs111744760 1927 dbSNP
rs1418060505 1928 dbSNP
rs931539339 1936 dbSNP
rs1048155406 1938 dbSNP
rs2743183 1943 dbSNP
rs531949762 1944 dbSNP
rs1309751269 1945 dbSNP
rs939763748 1954 dbSNP
rs1187356818 1959 dbSNP
rs1408036808 1966 dbSNP
rs1040707472 1968 dbSNP
rs1341236712 1977 dbSNP
rs933033745 1979 dbSNP
rs1356060239 1984 dbSNP
rs866754082 1987 dbSNP
rs1206359889 1990 dbSNP
rs1482371940 1998 dbSNP
rs1369520413 1999 dbSNP
rs1203738076 2003 dbSNP
rs1256248576 2008 dbSNP
rs1425106986 2011 dbSNP
rs1051515803 2013 dbSNP
rs1449813250 2018 dbSNP
rs943030783 2025 dbSNP
rs900839568 2028 dbSNP
rs1368579311 2030 dbSNP
rs115045794 2031 dbSNP
rs1049699407 2041 dbSNP
rs562377842 2042 dbSNP
rs1403001294 2047 dbSNP
rs893626370 2056 dbSNP
rs529703096 2057 dbSNP
rs1229530364 2060 dbSNP
rs1300280211 2063 dbSNP
rs1010761886 2064 dbSNP
rs1228304197 2067 dbSNP
rs1257157312 2074 dbSNP
rs1020757835 2075 dbSNP
rs903253297 2076 dbSNP
rs1014787879 2078 dbSNP
rs1465086512 2080 dbSNP
rs1190205991 2082 dbSNP
rs1388098413 2091 dbSNP
rs757534502 2097 dbSNP
rs1035621428 2118 dbSNP
rs183400827 2125 dbSNP
rs150090514 2131 dbSNP
rs1023242370 2138 dbSNP
rs922797501 2142 dbSNP
rs955566498 2149 dbSNP
rs1398018966 2151 dbSNP
rs952980641 2156 dbSNP
rs984258578 2158 dbSNP
rs987647680 2167 dbSNP
rs910286690 2168 dbSNP
rs1302551178 2169 dbSNP
rs943027012 2172 dbSNP
rs750566362 2173 dbSNP
rs939709964 2181 dbSNP
rs1254917745 2186 dbSNP
rs1329343782 2190 dbSNP
rs1210207665 2195 dbSNP
rs527428393 2213 dbSNP
rs9439737 2215 dbSNP
rs922254017 2228 dbSNP
rs1228266151 2245 dbSNP
rs1269310996 2251 dbSNP
rs1253282775 2261 dbSNP
rs932374372 2262 dbSNP
rs1428677290 2268 dbSNP
rs1200216324 2270 dbSNP
rs895678377 2274 dbSNP
rs1050088814 2277 dbSNP
rs145382556 2278 dbSNP
rs893751093 2294 dbSNP
rs1294512224 2300 dbSNP
rs1370290425 2306 dbSNP
rs946655149 2313 dbSNP
rs905924796 2314 dbSNP
rs72943170 2317 dbSNP
rs534045345 2318 dbSNP
rs1265802710 2324 dbSNP
rs376347838 2329 dbSNP
rs1328069780 2335 dbSNP
rs749808199 2341 dbSNP
rs994420550 2346 dbSNP
rs769083535 2356 dbSNP
rs113757237 2357 dbSNP
rs558897964 2358 dbSNP
rs1472941044 2370 dbSNP
rs1184477704 2373 dbSNP
rs1012950201 2374 dbSNP
rs1409967456 2377 dbSNP
rs770662980 2394 dbSNP
rs1165848726 2406 dbSNP
rs964418285 2412 dbSNP
rs776062943 2413 dbSNP
rs952968408 2414 dbSNP
rs1172825181 2418 dbSNP
rs925643159 2421 dbSNP
rs934310824 2442 dbSNP
rs556001831 2446 dbSNP
rs1397922766 2447 dbSNP
rs1297447645 2457 dbSNP
rs1490426958 2469 dbSNP
rs776112531 2472 dbSNP
rs917144975 2475 dbSNP
rs1015735003 2483 dbSNP
rs961571284 2484 dbSNP
rs763234402 2493 dbSNP
rs1249721478 2499 dbSNP
rs568055402 2505 dbSNP
rs535455996 2507 dbSNP
rs553779614 2511 dbSNP
rs1416296462 2513 dbSNP
rs769008603 2514 dbSNP
rs1422406594 2526 dbSNP
rs1329438300 2529 dbSNP
rs145180412 2530 dbSNP
rs1432169742 2534 dbSNP
rs976495941 2537 dbSNP
rs922398649 2539 dbSNP
rs1038416446 2540 dbSNP
rs1285922002 2554 dbSNP
rs897188523 2555 dbSNP
rs994113475 2557 dbSNP
rs1298080051 2558 dbSNP
rs1030338020 2564 dbSNP
rs545943536 2569 dbSNP
rs932295476 2572 dbSNP
rs985120427 2578 dbSNP
rs1226082444 2580 dbSNP
rs1248198167 2581 dbSNP
rs1187743156 2587 dbSNP
rs745447865 2588 dbSNP
rs769412183 2597 dbSNP
rs772764702 2598 dbSNP
rs1210967566 2599 dbSNP
rs1239396093 2602 dbSNP
rs1007470873 2604 dbSNP
rs1264598035 2616 dbSNP
rs1432124165 2617 dbSNP
rs1193805051 2621 dbSNP
rs1018409572 2623 dbSNP
rs1396525565 2625 dbSNP
rs1419472532 2629 dbSNP
rs1414502757 2631 dbSNP
rs1417622879 2638 dbSNP
rs138943790 2639 dbSNP
rs1451469222 2646 dbSNP
rs576519380 2648 dbSNP
rs1032743724 2653 dbSNP
rs946602627 2657 dbSNP
rs1042320557 2659 dbSNP
rs1345676474 2676 dbSNP
rs923775956 2680 dbSNP
rs1219841115 2684 dbSNP
rs367813628 2692 dbSNP
rs79146757 2693 dbSNP
rs1291743965 2694 dbSNP
rs1057459825 2706 dbSNP
rs866719856 2709 dbSNP
rs1466504416 2710 dbSNP
rs895874268 2712 dbSNP
rs1187100326 2715 dbSNP
rs1386293226 2716 dbSNP
rs1013434332 2725 dbSNP
rs1478651077 2729 dbSNP
rs1304421186 2742 dbSNP
rs980420848 2746 dbSNP
rs796182182 2748 dbSNP
rs1238389128 2751 dbSNP
rs941181880 2756 dbSNP
rs1455411021 2760 dbSNP
rs562364193 2765 dbSNP
rs1317410805 2768 dbSNP
rs1331538865 2774 dbSNP
rs1273062217 2775 dbSNP
rs186700016 2775 dbSNP
rs888450745 2777 dbSNP
rs192068581 2778 dbSNP
rs559858561 2784 dbSNP
rs961519645 2795 dbSNP
rs1161825364 2797 dbSNP
rs1051064442 2798 dbSNP
rs1452616792 2804 dbSNP
rs1487842599 2810 dbSNP
rs1224413073 2820 dbSNP
rs1245533453 2822 dbSNP
rs998382836 2823 dbSNP
rs761492528 2824 dbSNP
rs1030256216 2825 dbSNP
rs1413656813 2829 dbSNP
rs1177647242 2833 dbSNP
rs953782784 2834 dbSNP
rs536673378 2837 dbSNP
rs1471416307 2844 dbSNP
rs914904158 2846 dbSNP
rs1157700364 2850 dbSNP
rs767822290 2851 dbSNP
rs977962421 2855 dbSNP
rs923889913 2856 dbSNP
rs1406923443 2874 dbSNP
rs939287572 2875 dbSNP
rs1018939757 2876 dbSNP
rs753905725 2876 dbSNP
rs764290758 2876 dbSNP
rs1420655480 2878 dbSNP
rs1404357687 2879 dbSNP
rs1289081448 2883 dbSNP
rs904045117 2884 dbSNP
rs1162525273 2887 dbSNP
rs1349285438 2890 dbSNP
rs796962847 2891 dbSNP
rs182777457 2897 dbSNP
rs564220492 2898 dbSNP
rs916401336 2899 dbSNP
rs531395841 2903 dbSNP
rs1290172481 2907 dbSNP
rs373662467 2908 dbSNP
rs750608419 2909 dbSNP
rs1444775277 2910 dbSNP
rs888446134 2911 dbSNP
rs551498628 2912 dbSNP
rs1037272730 2923 dbSNP
rs535395221 2925 dbSNP
rs1180611951 2936 dbSNP
rs756277363 2936 dbSNP
rs1374427020 2938 dbSNP
rs897381762 2948 dbSNP
rs868620447 2952 dbSNP
rs766449636 2955 dbSNP
rs1473629750 2957 dbSNP
rs1161276988 2963 dbSNP
rs1384462074 2967 dbSNP
rs547686101 2972 dbSNP
rs796695317 2976 dbSNP
rs1309839319 2984 dbSNP
rs1311196373 2986 dbSNP
rs1321719545 2992 dbSNP
rs1328406853 2996 dbSNP
rs998847889 3012 dbSNP
rs1341318647 3016 dbSNP
rs1029797543 3017 dbSNP
rs1274561612 3020 dbSNP
rs1456090479 3027 dbSNP
rs1359272184 3033 dbSNP
rs879191511 3050 dbSNP
rs988891338 3056 dbSNP
rs565908745 3057 dbSNP
rs1006639462 3058 dbSNP
rs971469606 3070 dbSNP
rs1022489772 3075 dbSNP
rs1256376927 3077 dbSNP
rs539829177 3093 dbSNP
rs142165194 3094 dbSNP
rs1179968379 3097 dbSNP
rs577075440 3101 dbSNP
rs576526053 3108 dbSNP
rs977699613 3127 dbSNP
rs1412938271 3130 dbSNP
rs145671833 3131 dbSNP
rs1167038598 3133 dbSNP
rs1420064787 3135 dbSNP
rs1398014385 3136 dbSNP
rs962528791 3150 dbSNP
rs1464138367 3152 dbSNP
rs1382463635 3153 dbSNP
rs1436347042 3156 dbSNP
rs960571292 3161 dbSNP
rs1355394518 3172 dbSNP
rs1444814889 3174 dbSNP
rs973851838 3180 dbSNP
rs865847313 3183 dbSNP
rs992492383 3184 dbSNP
rs918672526 3185 dbSNP
rs916407020 3191 dbSNP
rs930041778 3191 dbSNP
rs1051607967 3197 dbSNP
rs1355361780 3203 dbSNP
rs148115392 3206 dbSNP
rs1259521617 3207 dbSNP
rs1427851868 3207 dbSNP
rs1295657664 3208 dbSNP
rs879122566 3208 dbSNP
rs942676888 3210 dbSNP
rs1217539470 3212 dbSNP
rs1040007052 3217 dbSNP
rs5014244 3220 dbSNP
rs909996187 3224 dbSNP
rs1236630740 3226 dbSNP
rs150613731 3232 dbSNP
rs188332862 3233 dbSNP
rs1360423386 3237 dbSNP
rs753872404 3238 dbSNP
rs1302668109 3239 dbSNP
rs1332286324 3248 dbSNP
rs1476875604 3259 dbSNP
rs1282188391 3260 dbSNP
rs892631241 3266 dbSNP
rs1167481611 3280 dbSNP
rs897168396 3281 dbSNP
rs139716670 3282 dbSNP
rs1051822479 3283 dbSNP
rs553002606 3291 dbSNP
rs1269440917 3293 dbSNP
rs889943529 3295 dbSNP
rs971118903 3300 dbSNP
rs1428779083 3314 dbSNP
rs1473050022 3326 dbSNP
rs1007501850 3329 dbSNP
rs1022435005 3332 dbSNP
rs1435741106 3336 dbSNP
rs55871862 3338 dbSNP
rs1294608422 3340 dbSNP
rs1368025960 3341 dbSNP
rs1402507836 3356 dbSNP
rs1339175599 3357 dbSNP
rs191323164 3376 dbSNP
rs1301991711 3380 dbSNP
rs6672534 3381 dbSNP
rs1229834448 3393 dbSNP
rs962561819 3402 dbSNP
rs1363481411 3406 dbSNP
rs1245278377 3417 dbSNP
rs973883208 3420 dbSNP
rs556271648 3424 dbSNP
rs1220276374 3430 dbSNP
rs57345079 3431 dbSNP
rs1483461549 3437 dbSNP
rs951285547 3440 dbSNP
rs992084426 3441 dbSNP
rs549550762 3442 dbSNP
rs1283793401 3451 dbSNP
rs1163569649 3453 dbSNP
rs969235630 3456 dbSNP
rs1443811424 3458 dbSNP
rs1296046809 3466 dbSNP
rs912624175 3471 dbSNP
rs1487946392 3472 dbSNP
rs1357087435 3473 dbSNP
rs1192538815 3475 dbSNP
rs1275313235 3477 dbSNP
rs1342933388 3484 dbSNP
rs1391135876 3484 dbSNP
rs1206742756 3494 dbSNP
rs561512401 3497 dbSNP
rs942735352 3498 dbSNP
rs776333729 3508 dbSNP
rs1039687708 3523 dbSNP
rs985000492 3528 dbSNP
rs1182743967 3530 dbSNP
rs866070204 3532 dbSNP
rs909064172 3534 dbSNP
rs574617896 3535 dbSNP
rs1443236633 3540 dbSNP
rs1242730720 3541 dbSNP
rs925535017 3544 dbSNP
rs780952871 3545 dbSNP
rs529075937 3546 dbSNP
rs1353505653 3547 dbSNP
rs918588732 3548 dbSNP
rs745516586 3550 dbSNP
rs547328609 3552 dbSNP
rs1189631188 3553 dbSNP
rs12121503 3558 dbSNP
rs890008906 3559 dbSNP
rs892659876 3569 dbSNP
rs1364024026 3570 dbSNP
rs1014160408 3573 dbSNP
rs1270985412 3577 dbSNP
rs1307048145 3583 dbSNP
rs759042906 3594 dbSNP
rs1211077809 3600 dbSNP
rs942985305 3602 dbSNP
rs1045501032 3606 dbSNP
rs560048018 3610 dbSNP
rs539447600 3616 dbSNP
rs1249120428 3622 dbSNP
rs1476684333 3626 dbSNP
rs775176118 3640 dbSNP
rs904036406 3641 dbSNP
rs1418164661 3643 dbSNP
rs765089120 3645 dbSNP
rs1400585583 3650 dbSNP
rs999222148 3654 dbSNP
rs1030744785 3658 dbSNP
rs1319590264 3663 dbSNP
rs1469064017 3671 dbSNP
rs1033941243 3677 dbSNP
rs1346389668 3679 dbSNP
rs1346834201 3687 dbSNP
rs896132669 3689 dbSNP
rs1013697661 3708 dbSNP
rs1361316593 3708 dbSNP
rs113783056 3716 dbSNP
rs1224252876 3718 dbSNP
rs1023312828 3721 dbSNP
rs1025497142 3739 dbSNP
rs969686543 3744 dbSNP
rs984707783 3745 dbSNP
rs1349722863 3747 dbSNP
rs1449164643 3748 dbSNP
rs1214237701 3763 dbSNP
rs1242096526 3763 dbSNP
rs1205609905 3764 dbSNP
rs951274970 3769 dbSNP
rs551778966 3770 dbSNP
rs1479912747 3775 dbSNP
rs182201648 3778 dbSNP
rs186936014 3782 dbSNP
rs1219548887 3790 dbSNP
rs1350433707 3792 dbSNP
rs1405566190 3793 dbSNP
rs1252573119 3802 dbSNP
rs851114 3803 dbSNP
rs955499244 3807 dbSNP
rs574236088 3808 dbSNP
rs192492282 3811 dbSNP
rs975488172 3825 dbSNP
rs553383889 3828 dbSNP
rs1159596075 3830 dbSNP
rs1313797469 3831 dbSNP
rs1284132719 3834 dbSNP
rs1490657549 3839 dbSNP
rs942910666 3854 dbSNP
rs578229951 3862 dbSNP
rs936639029 3874 dbSNP
rs988421928 3880 dbSNP
rs545461867 3885 dbSNP
rs925450534 3886 dbSNP
rs1234299273 3890 dbSNP
rs557770209 3891 dbSNP
rs34660444 3905 dbSNP
rs1052120808 3906 dbSNP
rs572005626 3916 dbSNP
rs1161672269 3917 dbSNP
rs1363758301 3920 dbSNP
rs767203865 3926 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 5081.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aguugagacguuuccUUCUUCu 5'
                         |||||| 
Target 5' -------------aaAAGAAGa 3'
 		1 - 9
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001135254 | 3UTR | AGAAGAAAAGAAGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000420770.2 | 3UTR | AAAAGAAGACUCUGUUGUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
169 hsa-miR-4778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT199338 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT203028 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT260646 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT336468 SRP9 signal recognition particle 9 2 2
MIRT389212 SERTAD2 SERTA domain containing 2 2 2
MIRT441814 TENM1 teneurin transmembrane protein 1 2 2
MIRT444029 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT454171 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT469663 RABEPK Rab9 effector protein with kelch motifs 2 2
MIRT495579 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT498340 PRELID2 PRELI domain containing 2 2 2
MIRT498696 LYRM2 LYR motif containing 2 2 6
MIRT504156 OPN5 opsin 5 2 4
MIRT506321 OTUD4 OTU deubiquitinase 4 2 4
MIRT507608 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT525431 PROX2 prospero homeobox 2 2 2
MIRT526973 PAX7 paired box 7 2 2
MIRT527814 TMEM74B transmembrane protein 74B 2 2
MIRT527960 MTAP methylthioadenosine phosphorylase 2 2
MIRT528083 NOL9 nucleolar protein 9 2 2
MIRT528480 STAMBPL1 STAM binding protein like 1 2 2
MIRT528947 PNMA5 paraneoplastic Ma antigen family member 5 2 2
MIRT530687 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT531733 SLC2A9 solute carrier family 2 member 9 2 2
MIRT532445 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT533331 UNK unkempt family zinc finger 2 2
MIRT534205 SLC38A9 solute carrier family 38 member 9 2 2
MIRT534322 SHISA6 shisa family member 6 2 2
MIRT535197 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT538076 DIAPH2 diaphanous related formin 2 2 2
MIRT539250 ANKRD50 ankyrin repeat domain 50 2 2
MIRT548733 CREBRF CREB3 regulatory factor 2 2
MIRT556406 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT559576 AP1AR adaptor related protein complex 1 associated regulatory protein 2 2
MIRT567661 ERGIC2 ERGIC and golgi 2 2 2
MIRT572750 FAM204A family with sequence similarity 204 member A 2 2
MIRT609355 ZNF664 zinc finger protein 664 2 2
MIRT611194 TMEM105 transmembrane protein 105 2 2
MIRT611545 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT611690 NODAL nodal growth differentiation factor 2 2
MIRT611810 FCRL4 Fc receptor like 4 2 2
MIRT612746 MYOCD myocardin 2 2
MIRT614177 FAM53B family with sequence similarity 53 member B 2 2
MIRT614431 TAZ tafazzin 2 2
MIRT614586 SDC1 syndecan 1 2 2
MIRT615547 TNFSF15 TNF superfamily member 15 2 2
MIRT615872 BRD3 bromodomain containing 3 2 2
MIRT615970 ASCL1 achaete-scute family bHLH transcription factor 1 2 2
MIRT616024 PRRG4 proline rich and Gla domain 4 2 4
MIRT616242 NFIC nuclear factor I C 2 2
MIRT616282 HMGB1 high mobility group box 1 2 2
MIRT616674 PRR15 proline rich 15 2 2
MIRT618302 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT618657 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT618754 SLC38A5 solute carrier family 38 member 5 2 2
MIRT619505 TXLNB taxilin beta 2 2
MIRT619545 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619605 MKKS McKusick-Kaufman syndrome 2 2
MIRT619804 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619923 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620442 SEMA3E semaphorin 3E 2 4
MIRT620730 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625345 TAPBP TAP binding protein 2 2
MIRT627510 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT632584 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636901 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT637873 UTP6 UTP6, small subunit processome component 2 2
MIRT639011 ABI2 abl interactor 2 2 2
MIRT639054 FPR1 formyl peptide receptor 1 2 2
MIRT639085 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639589 RGS5 regulator of G protein signaling 5 2 2
MIRT639718 NPRL3 NPR3 like, GATOR1 complex subunit 2 2
MIRT639904 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640392 ZNF785 zinc finger protein 785 2 2
MIRT640786 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT641290 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641442 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT642426 STAT3 signal transducer and activator of transcription 3 2 2
MIRT642682 KRT74 keratin 74 2 2
MIRT643362 TRIM10 tripartite motif containing 10 2 2
MIRT643982 DUSP28 dual specificity phosphatase 28 2 2
MIRT644466 ZNF747 zinc finger protein 747 2 2
MIRT644561 SPOP speckle type BTB/POZ protein 2 2
MIRT645748 FAM213A family with sequence similarity 213 member A 2 2
MIRT646737 FADS1 fatty acid desaturase 1 2 2
MIRT647446 SIX6 SIX homeobox 6 2 2
MIRT648317 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT649327 POLG DNA polymerase gamma, catalytic subunit 2 2
MIRT649453 WDR70 WD repeat domain 70 2 2
MIRT650066 CCDC134 coiled-coil domain containing 134 2 2
MIRT650156 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT650317 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650429 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT651325 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651843 USP13 ubiquitin specific peptidase 13 2 2
MIRT652532 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT652816 TARDBP TAR DNA binding protein 2 2
MIRT652971 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT653466 SLC5A12 solute carrier family 5 member 12 2 4
MIRT653568 SLC35B3 solute carrier family 35 member B3 2 2
MIRT655678 NUMBL NUMB like, endocytic adaptor protein 2 2
MIRT656785 KPNA4 karyopherin subunit alpha 4 2 2
MIRT656798 KNTC1 kinetochore associated 1 2 2
MIRT656988 KDM5A lysine demethylase 5A 2 2
MIRT657292 HOXB5 homeobox B5 2 2
MIRT657497 HBEGF heparin binding EGF like growth factor 2 4
MIRT658012 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT658146 STXBP2 syntaxin binding protein 2 2 2
MIRT658259 FAXC failed axon connections homolog 2 2
MIRT659051 DGKH diacylglycerol kinase eta 2 2
MIRT659171 DCTN3 dynactin subunit 3 2 2
MIRT659936 CACHD1 cache domain containing 1 2 2
MIRT660079 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT660167 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660292 BICC1 BicC family RNA binding protein 1 2 2
MIRT660317 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT660340 BCAT1 branched chain amino acid transaminase 1 2 2
MIRT660447 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT661634 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662438 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664202 TBCA tubulin folding cofactor A 2 2
MIRT666436 SH2B3 SH2B adaptor protein 3 2 2
MIRT666666 RBM47 RNA binding motif protein 47 2 4
MIRT669253 C4orf36 chromosome 4 open reading frame 36 2 2
MIRT669502 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT693912 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700435 PURB purine rich element binding protein B 2 2
MIRT702857 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708857 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709030 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT709609 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT709810 AR androgen receptor 2 2
MIRT709872 A1CF APOBEC1 complementation factor 2 2
MIRT710208 ENAH ENAH, actin regulator 2 2
MIRT710964 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711173 EMCN endomucin 2 2
MIRT711219 RETSAT retinol saturase 2 2
MIRT711345 FMNL2 formin like 2 2 2
MIRT711441 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT711631 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711823 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT712164 SURF4 surfeit 4 2 2
MIRT712632 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713692 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT714906 CHMP3 charged multivesicular body protein 3 2 2
MIRT715161 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT715430 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT715660 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT715968 FADS3 fatty acid desaturase 3 2 2
MIRT716203 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716234 SRSF12 serine and arginine rich splicing factor 12 2 2
MIRT716251 PALM2 paralemmin 2 2 2
MIRT716375 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT716490 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT716744 APOL6 apolipoprotein L6 2 2
MIRT717624 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT718480 TMEM151A transmembrane protein 151A 2 2
MIRT718805 PRKCB protein kinase C beta 2 2
MIRT719276 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719432 NPTX2 neuronal pentraxin 2 2 2
MIRT721011 ZNF619 zinc finger protein 619 2 2
MIRT721819 HEATR5A HEAT repeat containing 5A 2 2
MIRT721997 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT723143 METTL24 methyltransferase like 24 2 2
MIRT723213 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT723427 MC2R melanocortin 2 receptor 2 2
MIRT723436 ADI1 acireductone dioxygenase 1 2 2
MIRT723542 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT724474 MMD monocyte to macrophage differentiation associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4778-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4778-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

Error report submission