pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FEZ2   
Synonyms HUM3CL
Description fasciculation and elongation protein zeta 2
Transcript NM_005102   
Other Transcripts NM_001042548   
Expression
Putative miRNA Targets on FEZ2
3'UTR of FEZ2
(miRNA target sites are highlighted)
>FEZ2|NM_005102|3'UTR
   1 AGCAGCAACTTTATCTGCGGTGGGCTCCAAGCTAGATTTCCGACAGCATTATTCTGAGAGCTGGCTACCATTACCCTTCT
  81 TGCTATTGGAAACTCAGCACATTTGAACTTGGGTTTGATTCAGTATTAACAGATCTTGACTACACTAATTCTTTATATTA
 161 TAGAACCAACGGAAATATGGGCACTATTTTGAATTCTAGAGATGGTTTTTGTTAAATCTACTAATAAACTGTTCTCTTAG
 241 TAGATTAAGAGAGAGTAATATTAATTGTGCATGTGCAGTTGTATTTCTCATTAACTGACAGTATGCCCATTTGTTTTTAT
 321 GGCTTTCTTATCTAAACTGCACTGATGAACTAGATTAAAGCCTTGGGAGATTTATACTATAAATTCAGTGATGGCAAGAA
 401 CCAACACTGTTTTTTTGTGAGAATTGTCAGTGTAACTATTACCTACCAGTATTGTTCAGAGAGATTGAAACAGAATAAAC
 481 GGGCTGTTCTTGAAGAAGCAAAACCAGAATATGCATTACTTTGGTTTAATACTTAGTGCTAACATTGAAACTGTTGGTGG
 561 TGATGGATTTTGTAGCTTGCTGCTTGTTTCACCACTGGTCAAATTTTAACCATTAAATTGCCATTCACTTTTAGAATCTT
 641 GTATTTAAGTTTTGATTTTCAAATGTTCTGCTTCATGTGTCTGTGAAGAATTGTACTTTAAGTGTGTGTCCTCTGAGGTG
 721 CTTGAGAAAGTGTACACTGCAGAACTGCCCATTCTCATTACTGTGTCCTATTTTATTCATGCCTGTGTGTTTTTCTTAAG
 801 TATGAATTCTAGATACAGCTACTTATGGATTCATCAATATCATGAGCACTTTTGCTGGTTCCAGTCAAATCAATGGCATT
 881 TAATAAATTTTTTAAGAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            |||| | |||||||| 
Target 5' caCTGG-T-CAAATTTTa 3'
593 - 608 154.00 -11.50
2
miRNA  3' agGACCUACGUUUAAAAu 5'
            :|| || :||:|||| 
Target 5' tcTTGTATTTAAGTTTTg 3'
637 - 654 140.00 -8.20
3
miRNA  3' agGAC--CUAC-GUUUAAAAu 5'
            :||  |:|| :::||||| 
Target 5' tgTTGGTGGTGATGGATTTTg 3'
552 - 572 118.00 -5.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8769188 41 COSMIC
COSN30159963 121 COSMIC
COSN21102673 332 COSMIC
COSN7127665 432 COSMIC
COSN17553510 620 COSMIC
COSN20096516 645 COSMIC
COSN20096514 699 COSMIC
COSN14546910 702 COSMIC
COSN27807902 737 COSMIC
COSN24657265 748 COSMIC
COSN9372251 818 COSMIC
COSN30760387 841 COSMIC
COSN1838385 846 COSMIC
COSN30134723 886 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1226618885 3 dbSNP
rs1355735397 4 dbSNP
rs1292551558 6 dbSNP
rs115785235 8 dbSNP
rs1352069601 10 dbSNP
rs926416132 12 dbSNP
rs1247156798 13 dbSNP
rs750610461 14 dbSNP
rs567071887 18 dbSNP
rs370204754 19 dbSNP
rs1403034447 21 dbSNP
rs941509308 22 dbSNP
rs764644627 25 dbSNP
rs1473887069 27 dbSNP
rs375535828 31 dbSNP
rs910048341 32 dbSNP
rs773950876 34 dbSNP
rs1478567904 38 dbSNP
rs1248605391 39 dbSNP
rs372483121 41 dbSNP
rs749026602 42 dbSNP
rs772683211 45 dbSNP
rs951649095 46 dbSNP
rs1209240931 47 dbSNP
rs530195128 51 dbSNP
rs562956430 54 dbSNP
rs1414604826 68 dbSNP
rs964463335 69 dbSNP
rs922590957 83 dbSNP
rs866354619 85 dbSNP
rs910271942 89 dbSNP
rs545230656 94 dbSNP
rs1018338894 103 dbSNP
rs1359139680 113 dbSNP
rs1027561165 117 dbSNP
rs1354928878 122 dbSNP
rs1000703157 124 dbSNP
rs967875241 130 dbSNP
rs1022121439 132 dbSNP
rs1238141142 136 dbSNP
rs1230231100 138 dbSNP
rs532723871 140 dbSNP
rs1198407012 147 dbSNP
rs1256163832 150 dbSNP
rs1269610129 151 dbSNP
rs1431599161 161 dbSNP
rs1342249160 166 dbSNP
rs961570052 170 dbSNP
rs1404310574 171 dbSNP
rs1009429725 178 dbSNP
rs1471903835 179 dbSNP
rs1158749229 184 dbSNP
rs747479386 187 dbSNP
rs1467729160 209 dbSNP
rs878943856 217 dbSNP
rs760419412 224 dbSNP
rs1374896790 228 dbSNP
rs1002801412 229 dbSNP
rs1348497273 231 dbSNP
rs1390756300 236 dbSNP
rs1165310621 238 dbSNP
rs905961966 239 dbSNP
rs1023073673 249 dbSNP
rs1279240084 251 dbSNP
rs1012061860 253 dbSNP
rs1342233702 253 dbSNP
rs1248991223 255 dbSNP
rs893003672 256 dbSNP
rs1479920563 257 dbSNP
rs72868427 257 dbSNP
rs540675904 264 dbSNP
rs1435323131 265 dbSNP
rs537912698 267 dbSNP
rs1430663267 275 dbSNP
rs1170497814 281 dbSNP
rs1003186265 289 dbSNP
rs904870057 295 dbSNP
rs1476089431 303 dbSNP
rs1294081462 304 dbSNP
rs150362693 308 dbSNP
rs1384916470 313 dbSNP
rs1197873294 316 dbSNP
rs1490347704 320 dbSNP
rs941109054 322 dbSNP
rs910049221 324 dbSNP
rs1047296402 326 dbSNP
rs185851546 331 dbSNP
rs1224254752 333 dbSNP
rs1271796701 336 dbSNP
rs573896953 344 dbSNP
rs930388385 346 dbSNP
rs1272599342 349 dbSNP
rs1489663946 361 dbSNP
rs543159095 365 dbSNP
rs1252774549 373 dbSNP
rs922872593 379 dbSNP
rs769091020 387 dbSNP
rs1417423596 391 dbSNP
rs1428060799 396 dbSNP
rs1281519531 397 dbSNP
rs964051048 401 dbSNP
rs972842283 407 dbSNP
rs1351484516 408 dbSNP
rs1324925917 409 dbSNP
rs1456333453 409 dbSNP
rs575479914 410 dbSNP
rs1035880822 411 dbSNP
rs1295000978 417 dbSNP
rs140289170 424 dbSNP
rs772136699 425 dbSNP
rs1022068975 426 dbSNP
rs1323963368 427 dbSNP
rs1212405673 428 dbSNP
rs1353522578 429 dbSNP
rs1329089257 430 dbSNP
rs1466912874 433 dbSNP
rs1240636584 434 dbSNP
rs1485670513 438 dbSNP
rs1426580125 443 dbSNP
rs1182448842 447 dbSNP
rs1416090746 448 dbSNP
rs148282508 451 dbSNP
rs956556591 453 dbSNP
rs577998064 457 dbSNP
rs745923284 458 dbSNP
rs1315773746 465 dbSNP
rs1458681213 465 dbSNP
rs1003877071 466 dbSNP
rs904816601 472 dbSNP
rs1011700091 475 dbSNP
rs1193242989 475 dbSNP
rs181966332 480 dbSNP
rs1045170356 481 dbSNP
rs1205473780 483 dbSNP
rs1459312537 489 dbSNP
rs1330220828 495 dbSNP
rs1005295059 496 dbSNP
rs1282599814 498 dbSNP
rs888226608 500 dbSNP
rs1211111999 506 dbSNP
rs1239263064 510 dbSNP
rs1031515452 511 dbSNP
rs1047244460 521 dbSNP
rs998659268 524 dbSNP
rs1252523363 529 dbSNP
rs1324132081 532 dbSNP
rs1473541169 534 dbSNP
rs1156525194 544 dbSNP
rs901776860 546 dbSNP
rs930107711 554 dbSNP
rs11885432 556 dbSNP
rs1413692956 563 dbSNP
rs1222050033 565 dbSNP
rs1351567057 566 dbSNP
rs1445025582 578 dbSNP
rs1278097436 589 dbSNP
rs1372325656 593 dbSNP
rs1041267320 594 dbSNP
rs1220003028 595 dbSNP
rs374906288 598 dbSNP
rs1281074097 610 dbSNP
rs1345799867 612 dbSNP
rs184409641 613 dbSNP
rs778244358 622 dbSNP
rs1448443488 628 dbSNP
rs1275451781 632 dbSNP
rs1049167040 638 dbSNP
rs1179607818 639 dbSNP
rs1232070833 641 dbSNP
rs1478258801 642 dbSNP
rs930419792 644 dbSNP
rs918978915 645 dbSNP
rs1335433232 649 dbSNP
rs386389934 649 dbSNP
rs3076528 650 dbSNP
rs1327481553 651 dbSNP
rs35775049 651 dbSNP
rs397774857 651 dbSNP
rs5830428 651 dbSNP
rs1360429035 652 dbSNP
rs1364139624 665 dbSNP
rs942950987 666 dbSNP
rs748873796 672 dbSNP
rs1178844467 677 dbSNP
rs1417915766 679 dbSNP
rs1368970212 688 dbSNP
rs911215280 696 dbSNP
rs200898555 699 dbSNP
rs3076526 700 dbSNP
rs1452119160 701 dbSNP
rs1223407179 702 dbSNP
rs67650866 702 dbSNP
rs75063444 703 dbSNP
rs138161771 704 dbSNP
rs1453368168 704 dbSNP
rs940216855 708 dbSNP
rs928794162 710 dbSNP
rs143174671 716 dbSNP
rs1441718715 719 dbSNP
rs947474547 724 dbSNP
rs1406466500 726 dbSNP
rs913294028 730 dbSNP
rs1392769516 732 dbSNP
rs1440421360 737 dbSNP
rs1298662816 761 dbSNP
rs990521967 763 dbSNP
rs1203073431 765 dbSNP
rs1225255727 770 dbSNP
rs771028510 775 dbSNP
rs957487243 776 dbSNP
rs566701979 791 dbSNP
rs998919528 791 dbSNP
rs965894548 798 dbSNP
rs1208960380 800 dbSNP
rs1018789818 802 dbSNP
rs1444937293 803 dbSNP
rs1316269975 824 dbSNP
rs1368574038 825 dbSNP
rs988868137 826 dbSNP
rs1242077862 827 dbSNP
rs956504336 838 dbSNP
rs1461314291 846 dbSNP
rs1034818208 847 dbSNP
rs982047593 851 dbSNP
rs370767945 852 dbSNP
rs969745591 853 dbSNP
rs548636718 858 dbSNP
rs1313880842 861 dbSNP
rs536771747 862 dbSNP
rs749570423 864 dbSNP
rs1291433272 866 dbSNP
rs777661878 870 dbSNP
rs569412304 873 dbSNP
rs1025372662 883 dbSNP
rs1228718441 884 dbSNP
rs994889530 885 dbSNP
rs867258019 886 dbSNP
rs897477820 887 dbSNP
rs1204210119 890 dbSNP
rs1380692542 894 dbSNP
rs550928662 898 dbSNP
rs1036099499 899 dbSNP
rs1190694994 900 dbSNP
rs1256097472 901 dbSNP
rs1475177413 906 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 9637.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005102 | 3UTR | CAGAAUAAACGGGCUGUUCUUGAAGAAGCAAAACCAGAAUAUGCAUUACUUUGGUUUAAUACUUAGUGCUAACAUUGAAACUGUUGGUGGUGAUGGAUUUUGUAGCUUGCUGCUUGUUUCACCACUGGUCAAAUUUUAACCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001042548 | 3UTR | AACCAGAAUAUGCAUUACUUUGGUUUAAUACUUAGUGCUAACAUUGAAACUGUUGGUGGUGAUGGAUUUUGUAGCUUGCUGCUUGUUUCACCACUGGUCAAAUUUUAACCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_005102 | 3UTR | AACGGGCUGUUCUUGAAGAAGCAAAACCAGAAUAUGCAUUACUUUGGUUUAAUACUUAGUGCUAACAUUGAAACUGUUGGUGGUGAUGGAUUUUGUAGCUUGCUGCUUGUUUCACCACUGGUCAAAUUUUAACCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001042548 | 3UTR | AAGCAAAACCAGAAUAUGCAUUACUUUGGUUUAAUACUUAGUGCUAACAUUGAAACUGUUGGUGGUGAUGGAUUUUGUAGCUUGCUGCUUGUUUCACCACUGGUCAAAUUUUAACCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_005102 | 3UTR | UGAAGAAGCAAAACCAGAAUAUGCAUUACUUUGGUUUAAUACUUAGUGCUAACAUUGAAACUGUUGGUGGUGAUGGAUUUUGUAGCUUGCUGCUUGUUUCACCACUGGUCAAAUUUUAACCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005102 | 3UTR | UUGAAACAGAAUAAACGGGCUGUUCUUGAAGAAGCAAAACCAGAAUAUGCAUUACUUUGGUUUAAUACUUAGUGCUAACAUUGAAACUGUUGGUGGUGAUGGAUUUUGUAGCUUGCUGCUUGUUUCACCACUGGUCAAAUUUUAACCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000379245.4 | 3UTR | UUCCAGUCAAAUCAAUGGCAUUUAAUAAAUUUUUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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