miRTarBase - #MIRT528083


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pre-miRNA Information
pre-miRNA hsa-mir-4778   
Genomic Coordinates chr2: 66358249 - 66358328
Description Homo sapiens miR-4778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4778-3p
Sequence 51| UCUUCUUCCUUUGCAGAGUUGA |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs936001904 2 dbSNP
rs925922703 3 dbSNP
rs184768286 8 dbSNP
rs1249073833 10 dbSNP
rs977504360 13 dbSNP
rs192300002 18 dbSNP
Putative Targets

Gene Information
Gene Symbol NOL9   
Synonyms Grc3, NET6
Description nucleolar protein 9
Transcript NM_024654   
Expression
Putative miRNA Targets on NOL9
3'UTR of NOL9
(miRNA target sites are highlighted)		 
>NOL9|NM_024654|3'UTR
   1 TGCTCGCGTTTTTAATAAGGGAAGAAACTTTCCTACCAGAAAGCTTTGTCTCAAGCCTGACCACAAGAGACATGATGGAG
  81 TTTCATGGCCATGAATGGTGCCCTTATTAGCAACAGTGTTTTTTGTGTAATTCGTGAATGTCATATAGTAGTCTTAAGTT
 161 TCTCTTTTAAAGCTGCATGAGCTAGAATTTGTTCTAGTCTTCTGTGTGATACTCATACTTGCTGTCCAGAGGGAGTAAAA
 241 CAGCAGAGAACAGTTTGTGTGCCATTAAAACAGAGATTCCTCAGAAAGTTCTTCAGGGACCTGGTTATTAGAATCAGGAT
 321 AAAAATAAGGAAACTGGGGCCATTACAATGTACCGAGAAGGAAGGAAGAAGGCCGACCTGCAGGATCTCAAGCATAATGG
 401 ATACAAGGGCTCGCCACGGGCCTTGCCTGAGCCATGTGCAGAGCTGGGGTCCAGCGGTCTGCTTCCTTGGAGCCAGTGTG
 481 GATGGTTACAGCCCATCCATTTGGTGCAGTTGTACTTGGTCTGTTATATTCAATCAAGGTTTAATAGATAGGGCTGGGCA
 561 TGGTGGCTCATGCACACCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGAGGATTGCTTGAGCCTCGGAGTTCCAGGC
 641 TGGAGTACACCAACTACTCCAGCCTGAGCGACAGAGTAAGACCTTATCTTTTAAAAAAGAAAAGAAAAATTTAAACGGGT
 721 TTGATAGATATAAATTTGGACCCAAGAGCCCTTCCTTTTTTTTAATCCTGAGGTTTTATGCTGAGGAAATTTCTTTCAAA
 801 TCTGGAAAACCTCGGGGCCAGGCGCAGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGCAGGCGGTTCACG
 881 AGGTCAGGAGATTGAGACCATCCTGGCTAACACAGTGAAACTCCGTCTCTACTAAAAATACAAAAAACTAGCTGGGCGTG
 961 GTGGTGGGCGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTGCAGT
1041 GAGCCGAGGTCACGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAGACTCCATCTCAAAAAAAAAAAATAATAATCTGG
1121 AAAACCTCTTCTGGGGGCTCTTATAAAAGTAGATTTGTCCAAATTGACTTCTGATCTGAGGCCAGAGACAACCACAGGGC
1201 AGAGCTGGAGACTGGGCTGTTTTGAAGGAAGAAGGACTGGCAGACCAGCTCTTGGGAAAGCTCCATTATTGCCTGTGGGA
1281 GGCTGGACCTGAACTTGCACCTATGAACAACCCTGCCATTTAGAGCTTTTTCCTGGGGGTGCCGGCGGCTGGTGACCAGA
1361 CTGCCATTCTCCACGTTCTCCCTGGTGCTTCCGACTCTGTCCTCTAGGTTGGAAGTGGTTTGTGTAAACGGGTGATGGGA
1441 CCAGGTCACATCATTTCTGCATTTAAGACAGCAGGATACTTCCTGGGGCTGAGGTTCAAACTGGTATTGTGACCACCGCT
1521 TTGACAGAATTCCATCTTCCCAGCATGATCACATTGTAAGACTATTAGGATGTGTGGGTTTTAACACTTATATACACTTA
1601 TACAACTGTTGGTTATCATTGTCTTTAGTATTTTACAGTGGCCCCTCAGCACCTCTTAGACCCAACAGCAAAGGACTTAA
1681 AATAAGCACAGGAAACCTTGCTATGGTGATTAGTTTTGATACCTTTGAGACAATTGAGTCTAGCTTCTTAGTTGCCCCTT
1761 ATTTATGTTGAAATCTGGCTCATTCATATGATGTTTTACTGTGCTGGCCTTGTAAAGAATTTTAAGACAATCCATCACCA
1841 TCAATGTTTTGCCTTTCTCCACTTTCGTGTATCTTACAGTTATACTCACTGGAGGTCATTTGCAGCAAGGCTCTGGAAGA
1921 ATGAAACTGGTGCCCTGTAATTGCATTTGCATTCAATCTAGGTTTGCCTTCAGGCTTTAAATGCGGCCTGTATGAAGGTC
2001 AAGTCTTTTTCTTCAGTCCCTATCAGTAAAGAAAAATCGTTGCCTCTAGAGGGAGCTATCAGCTGTGGGTCAGGTGGCCG
2081 TACTGGGGCTAGAGTTGGCCCAGGAAGCTGTACAGGGTTTAGGGAAGGAGGTTCGGAGACAGGGAGCCAAGGCCTCTGTC
2161 AGGTCTAGCTTGTGCCGGTCAGACCTGCAGCAGCACCATTCTCCAGGATGACAATTCATCCCATTATTGATGGCAGTGGC
2241 CTTTTTATCCTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCGC
2321 AATCTGGGCTCACTGCCACCTCCGCCTCCCGGGTTCAAGTGATTCTCTTGCCTCAACCTCCCGAGTAGCTGGGATTACAG
2401 GCATGCGCCACCATGCCTGGCTGATTTTCTATTTTTAGTAGAGAAGGGGTTTCACCATGTTGGCCAGGCTGGTTTTGAAC
2481 TCCTGTCCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACCGCACCCGGCTGGTG
2561 GCAGTGGCTTTAAGGGCATTTAGAAGAAGGACAAGATTGGACTTTTTATCATTTCCACAGTCTGTTATGGGTCAGATTAG
2641 GTAGTAAGGAGTTCTCCATTGGAGCTATTCTTTTTTTTTTTTCTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGG
2721 CTGGGGTGCAGTGGCACGACCTTGGCTCACTACAGCCTCTCCCCTCCCGGGTTCAAGTGATTCTTCTGCCCCAGCCTCCC
2801 AAGTAGCTGGGATTACAGGTGAGCGCCACCATGCCTGGCTAATTTTTATATTTTTAGTAGAGATAGGGTTTCACCGTATT
2881 GGCTAGGCTGGTCTCGATCTCCTGACCTTGTGATCCGCTTGCCTCGGCCTCCCAAAGTGCTGAAGCAATTTCTTTTTTTT
2961 TTTTTTTTTTGAGACAGAGTCTAGCTCTGTCGCCCAGGCTGGGGTGCAGTGGAGTGATCTCGGCTCACTGCAACTTCCGC
3041 CTCCCAGGTTTAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTATGCCACCACGCCCAGCTAAT
3121 TTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCCGCC
3201 TTGGCCTCCGAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCTGAAGCTATTCTTTACAAAAGCTCTTAGTT
3281 TTTGTTTGTTTGTTTGTTTTTTTCTTTTGCGACGGACTCTCTGTCGCCAAGGCTGGAGTGCAGTGGCCTGATCTCAGGTC
3361 ACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCCTGCCAC
3441 CACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGCGTTTCACTTTATTGGTCAGGCTGGTCTCGAACTTCCAACCTC
3521 AGGGGATCCGCCTGCCTTGGCCTCCCAAGGTGTTGGGATTACAGGCATAAGACACTGTGCCTGGGCCTCTTAGTAATTTT
3601 TGTATGTAATTTTCAAAGTATCCGGGATTACAGGCGCCCGCCACTACACTAGCTAATTTTTTTTGTATTTTTAGTAGAGA
3681 TGGGGTTTTACTATGTTGGCTAGGCTGGTCTCGAGCTCCTGACCTCGTGATCCGTCCACCTTGGCCTCCCAAAGTGCTGG
3761 GATTACAGGCGTGAGCCACCGCGCCCGGCCTAGGTCATTTGTTTTTGGGTTTGGATGGCAAGATCATGGATAAGACAGCA
3841 GGCTTTGATTATAGAGCTCTGAGTTCAAATCCTGGCTCTACCACTTGTCAGTGGTGTAACTTGGAGGAAGATGCTTAGCC
3921 TGAGCCTGTTTTATGTTTTGAAGATTGGGTAATTGTCCTTCCTTCAGTGTTCCTGGGTGAGGAGTAAGTGAAGTCATGTC
4001 TATAAGAGATGTAGCACAGTCTCCGGCATGTAGAAACGGTCAGTAACTCCTAGTGTGTAGCTAGCCTCTGATGAGATGGT
4081 AAACTCAGGAGGCTGGCACCACGGCTGTGCTACTCACGGTCATGCTGGAGGGATGCAGAAACTAAATGAATCCACAGCTA
4161 CTTACTCATCTTGCCTCTGGCAGGTTCACCTTAAAATTGTTGCTACCAAGCTTCCTGTGGTCAAAGAGCCCTTGAGGAAG
4241 CAAGCTCCACGGCCACCATAGATAACCCATTCCTGAAAGTTTTTCATAAACCCCCACTTGTTGCTTTTAAAATTTTATAA
4321 GCAGCTTACACATGTAGAAAATGATCCTCCAGCCCACCACCACATAGTAATCACTGACACTGTGAGGTGTCTCAGCTGGG
4401 GTTCTGCTGTGTGTGTGTGTATTTTACAAAATATGTATGGTTTCTGTTCAGCTCTTTTCAGTTAACAGATGAACTTTTGT
4481 ATCATTAAATATTTTTGAAAACATGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agUUGA-GACGUUUCCUUCUUCu 5'
            ::|| :| ::|||||||||| 
Target 5' tgGGCTGTTTTGAAGGAAGAAGg 3'
 1213 - 1235 164.00 -18.20
2 
miRNA  3' aguugagacgUUUCCUUCUUCu 5'
                    :|||||||||| 
Target 5' taccgagaagGAAGGAAGAAGg 3'
 351 - 372 156.00 -15.00
3 
miRNA  3' aguugaGACGUUUC-------CUUCUUCu 5'
                || :||:|       ||||||| 
Target 5' cagtggCTTTAAGGGCATTTAGAAGAAGg 3'
 2562 - 2590 144.00 -12.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30452190 31 COSMIC
COSN31613616 33 COSMIC
COSN26986718 36 COSMIC
COSN30187352 39 COSMIC
COSN30156540 40 COSMIC
COSN30158516 59 COSMIC
COSN30107412 86 COSMIC
COSN30187865 93 COSMIC
COSN31598515 101 COSMIC
COSN8862429 110 COSMIC
COSN20067932 119 COSMIC
COSN30533255 130 COSMIC
COSN5265808 177 COSMIC
COSN22097620 330 COSMIC
COSN27601571 1110 COSMIC
COSN24558461 1326 COSMIC
COSN1452233 1392 COSMIC
COSN10051821 1641 COSMIC
COSN28242768 1708 COSMIC
COSN29525802 1990 COSMIC
COSN14971218 2344 COSMIC
COSN32064822 2682 COSMIC
COSN31357237 2683 COSMIC
COSN21807906 2705 COSMIC
COSN16154729 2750 COSMIC
COSN1107249 2952 COSMIC
COSN5169261 3079 COSMIC
COSN21930979 3129 COSMIC
COSN6041556 3231 COSMIC
COSN14563030 3311 COSMIC
COSN28354909 3401 COSMIC
COSN6041555 3524 COSMIC
COSN20744494 3877 COSMIC
COSN31960165 4055 COSMIC
COSN7277055 4452 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1331091507 2 dbSNP
rs778748074 3 dbSNP
rs757851239 4 dbSNP
rs376665355 5 dbSNP
rs12142404 6 dbSNP
rs192691693 7 dbSNP
rs777279716 8 dbSNP
rs771524189 17 dbSNP
rs571384405 19 dbSNP
rs376823746 20 dbSNP
rs867459151 23 dbSNP
rs1237236721 28 dbSNP
rs758682452 31 dbSNP
rs1453067340 35 dbSNP
rs372182453 36 dbSNP
rs1209100553 38 dbSNP
rs748311935 42 dbSNP
rs779954159 44 dbSNP
rs1239500982 54 dbSNP
rs41278018 56 dbSNP
rs924621907 57 dbSNP
rs978809123 65 dbSNP
rs538035786 66 dbSNP
rs1379630807 67 dbSNP
rs567303256 71 dbSNP
rs1471056453 72 dbSNP
rs866987310 73 dbSNP
rs1320372705 74 dbSNP
rs1289631873 77 dbSNP
rs1023136892 86 dbSNP
rs1381786307 87 dbSNP
rs549282389 88 dbSNP
rs1316761256 98 dbSNP
rs1432410885 101 dbSNP
rs13513 110 dbSNP
rs1187068954 111 dbSNP
rs1163986909 125 dbSNP
rs1348116398 125 dbSNP
rs560226187 127 dbSNP
rs960557314 132 dbSNP
rs1259688778 133 dbSNP
rs778224223 134 dbSNP
rs1043122460 140 dbSNP
rs994167138 143 dbSNP
rs896783462 144 dbSNP
rs1222906102 145 dbSNP
rs1282812399 146 dbSNP
rs770076585 156 dbSNP
rs1272866424 162 dbSNP
rs1225737115 182 dbSNP
rs1340950728 187 dbSNP
rs1297864638 191 dbSNP
rs1351826448 202 dbSNP
rs1383485780 204 dbSNP
rs1284012933 205 dbSNP
rs948598089 210 dbSNP
rs915824196 214 dbSNP
rs1243603715 222 dbSNP
rs992741075 223 dbSNP
rs1353237584 236 dbSNP
rs1367249269 241 dbSNP
rs1166407711 243 dbSNP
rs111243254 246 dbSNP
rs938508073 251 dbSNP
rs1015215408 255 dbSNP
rs1172798549 257 dbSNP
rs1005253829 259 dbSNP
rs1266729670 262 dbSNP
rs116602746 263 dbSNP
rs533108600 264 dbSNP
rs961774461 270 dbSNP
rs1204973497 273 dbSNP
rs1016903542 277 dbSNP
rs984531097 282 dbSNP
rs1229130507 293 dbSNP
rs1309958647 299 dbSNP
rs1299944893 300 dbSNP
rs1219743938 307 dbSNP
rs562596667 314 dbSNP
rs1402425146 315 dbSNP
rs1385397520 317 dbSNP
rs1162496196 318 dbSNP
rs1306091188 337 dbSNP
rs1409058032 338 dbSNP
rs932508895 348 dbSNP
rs187311379 350 dbSNP
rs576579158 353 dbSNP
rs147847447 354 dbSNP
rs1176813131 355 dbSNP
rs1477551581 355 dbSNP
rs934583849 371 dbSNP
rs753074678 374 dbSNP
rs1064835 375 dbSNP
rs1253041870 376 dbSNP
rs1197216367 381 dbSNP
rs572387033 384 dbSNP
rs947444958 394 dbSNP
rs182200443 397 dbSNP
rs1332126311 405 dbSNP
rs752971374 412 dbSNP
rs960205333 413 dbSNP
rs1233310502 414 dbSNP
rs1339248467 418 dbSNP
rs538643911 422 dbSNP
rs751184891 425 dbSNP
rs1303643645 426 dbSNP
rs1471022816 432 dbSNP
rs578066670 439 dbSNP
rs1012530722 448 dbSNP
rs962647615 449 dbSNP
rs144417620 450 dbSNP
rs763677938 450 dbSNP
rs114036210 451 dbSNP
rs1473183158 455 dbSNP
rs1365920665 456 dbSNP
rs1185792743 461 dbSNP
rs1005201522 462 dbSNP
rs952444829 472 dbSNP
rs1183788791 476 dbSNP
rs1165899829 477 dbSNP
rs1462302992 478 dbSNP
rs1265638226 481 dbSNP
rs1465340636 504 dbSNP
rs187765536 506 dbSNP
rs567470421 508 dbSNP
rs12047275 511 dbSNP
rs1262411222 518 dbSNP
rs183928178 519 dbSNP
rs1242428236 537 dbSNP
rs1339624743 546 dbSNP
rs1188414439 550 dbSNP
rs1316059987 551 dbSNP
rs114430381 553 dbSNP
rs1363156134 560 dbSNP
rs940080861 563 dbSNP
rs909954742 566 dbSNP
rs1458244504 569 dbSNP
rs900973932 573 dbSNP
rs1246639531 578 dbSNP
rs1161971318 580 dbSNP
rs144461755 587 dbSNP
rs954009303 595 dbSNP
rs1163849936 597 dbSNP
rs532970322 601 dbSNP
rs1245668556 608 dbSNP
rs191646661 609 dbSNP
rs548098441 615 dbSNP
rs1274249496 620 dbSNP
rs1043066587 621 dbSNP
rs947394086 625 dbSNP
rs772979224 628 dbSNP
rs186749446 629 dbSNP
rs999423986 633 dbSNP
rs1055853531 635 dbSNP
rs1270203850 649 dbSNP
rs1215819870 652 dbSNP
rs968946004 657 dbSNP
rs1431657301 659 dbSNP
rs550670453 666 dbSNP
rs761558053 669 dbSNP
rs928816805 670 dbSNP
rs1438689864 673 dbSNP
rs1305265344 677 dbSNP
rs1426174823 678 dbSNP
rs1012646428 680 dbSNP
rs972674356 688 dbSNP
rs1475484363 691 dbSNP
rs1326411744 692 dbSNP
rs962304995 693 dbSNP
rs528945740 700 dbSNP
rs1196713039 702 dbSNP
rs80274294 705 dbSNP
rs772346410 716 dbSNP
rs985023986 719 dbSNP
rs1274236620 720 dbSNP
rs1215358084 723 dbSNP
rs952354653 731 dbSNP
rs542788980 755 dbSNP
rs1346630262 756 dbSNP
rs1425022481 763 dbSNP
rs1172288836 764 dbSNP
rs12752686 764 dbSNP
rs17439014 765 dbSNP
rs1327793917 766 dbSNP
rs1410148405 782 dbSNP
rs536189632 783 dbSNP
rs932735162 784 dbSNP
rs1477402321 789 dbSNP
rs774425317 796 dbSNP
rs921229664 796 dbSNP
rs1480068881 808 dbSNP
rs965444893 813 dbSNP
rs560404218 814 dbSNP
rs1205529760 823 dbSNP
rs924847605 824 dbSNP
rs1276604282 826 dbSNP
rs1199998602 827 dbSNP
rs140483150 830 dbSNP
rs1285806843 832 dbSNP
rs999123010 835 dbSNP
rs1227045498 836 dbSNP
rs903084499 847 dbSNP
rs1042972816 855 dbSNP
rs1280440618 861 dbSNP
rs1011505879 865 dbSNP
rs1337225411 867 dbSNP
rs577987768 873 dbSNP
rs1468868112 874 dbSNP
rs1056237647 879 dbSNP
rs1178523064 880 dbSNP
rs1021769528 885 dbSNP
rs1371402538 888 dbSNP
rs6696498 893 dbSNP
rs1471031340 898 dbSNP
rs1236011360 903 dbSNP
rs190045171 905 dbSNP
rs1461845703 915 dbSNP
rs1036511600 924 dbSNP
rs574029468 925 dbSNP
rs1035280694 926 dbSNP
rs1285564482 928 dbSNP
rs940836720 929 dbSNP
rs1311209087 931 dbSNP
rs909396831 934 dbSNP
rs1437063703 941 dbSNP
rs1396218050 942 dbSNP
rs1282115798 945 dbSNP
rs1158377091 946 dbSNP
rs1332297994 953 dbSNP
rs555649187 956 dbSNP
rs1338046411 957 dbSNP
rs533968921 958 dbSNP
rs897525418 959 dbSNP
rs1159737803 963 dbSNP
rs1015237236 965 dbSNP
rs920929695 966 dbSNP
rs1480794545 969 dbSNP
rs566633975 970 dbSNP
rs1050258497 974 dbSNP
rs1208116211 977 dbSNP
rs1186824332 984 dbSNP
rs1464498762 986 dbSNP
rs749834269 991 dbSNP
rs1243242642 1005 dbSNP
rs965144033 1014 dbSNP
rs1486572029 1018 dbSNP
rs569068796 1023 dbSNP
rs1214746668 1028 dbSNP
rs1359636898 1029 dbSNP
rs1316703680 1040 dbSNP
rs1314886208 1044 dbSNP
rs765050462 1045 dbSNP
rs967168557 1046 dbSNP
rs1021470174 1049 dbSNP
rs1041182838 1052 dbSNP
rs1224535219 1053 dbSNP
rs538102118 1054 dbSNP
rs1425056319 1056 dbSNP
rs1387390027 1057 dbSNP
rs1166916497 1058 dbSNP
rs944021916 1066 dbSNP
rs1420252604 1067 dbSNP
rs1188828841 1078 dbSNP
rs1291447056 1078 dbSNP
rs1487750485 1081 dbSNP
rs1268642391 1086 dbSNP
rs1416734773 1097 dbSNP
rs1490941196 1104 dbSNP
rs372032537 1104 dbSNP
rs894431043 1105 dbSNP
rs1293542492 1106 dbSNP
rs116298941 1107 dbSNP
rs978055859 1108 dbSNP
rs1216271394 1110 dbSNP
rs1295592245 1110 dbSNP
rs546853591 1110 dbSNP
rs6693922 1110 dbSNP
rs199604403 1111 dbSNP
rs1452312761 1112 dbSNP
rs116183614 1113 dbSNP
rs200941830 1113 dbSNP
rs1461631722 1114 dbSNP
rs199949428 1114 dbSNP
rs1172544428 1116 dbSNP
rs569060631 1116 dbSNP
rs1429286288 1117 dbSNP
rs991620285 1117 dbSNP
rs958903796 1121 dbSNP
rs1481650598 1131 dbSNP
rs1036824926 1132 dbSNP
rs1035396086 1134 dbSNP
rs1193724000 1138 dbSNP
rs529009871 1141 dbSNP
rs1251519049 1142 dbSNP
rs1416718844 1143 dbSNP
rs940789022 1144 dbSNP
rs981243865 1145 dbSNP
rs1475913145 1146 dbSNP
rs887909407 1150 dbSNP
rs1391049744 1155 dbSNP
rs1049260850 1164 dbSNP
rs1374406600 1171 dbSNP
rs1300112124 1187 dbSNP
rs1185827767 1188 dbSNP
rs1464642554 1204 dbSNP
rs1484890754 1214 dbSNP
rs76388729 1216 dbSNP
rs1216243377 1222 dbSNP
rs922206724 1226 dbSNP
rs1410233336 1230 dbSNP
rs564568468 1231 dbSNP
rs1250850865 1232 dbSNP
rs754686028 1233 dbSNP
rs1271531890 1237 dbSNP
rs1459610476 1237 dbSNP
rs1261921012 1240 dbSNP
rs1204224146 1242 dbSNP
rs1325518180 1248 dbSNP
rs763694787 1255 dbSNP
rs11811007 1257 dbSNP
rs912244280 1261 dbSNP
rs1356139956 1264 dbSNP
rs1317259877 1266 dbSNP
rs996001634 1269 dbSNP
rs1382135057 1271 dbSNP
rs1394460892 1271 dbSNP
rs766015903 1283 dbSNP
rs541560481 1293 dbSNP
rs977534600 1299 dbSNP
rs527888577 1308 dbSNP
rs932319251 1310 dbSNP
rs1158469717 1311 dbSNP
rs1454679960 1313 dbSNP
rs1041134170 1319 dbSNP
rs944156745 1324 dbSNP
rs1442321006 1325 dbSNP
rs1393212397 1336 dbSNP
rs1241997216 1338 dbSNP
rs967158579 1343 dbSNP
rs1462265580 1344 dbSNP
rs1021460293 1346 dbSNP
rs1204456930 1347 dbSNP
rs990011499 1351 dbSNP
rs1368535756 1369 dbSNP
rs1041729564 1374 dbSNP
rs560266486 1375 dbSNP
rs118104030 1392 dbSNP
rs1263807011 1393 dbSNP
rs1248318290 1394 dbSNP
rs1186841029 1401 dbSNP
rs1324743968 1401 dbSNP
rs757883496 1405 dbSNP
rs533442787 1408 dbSNP
rs1034655435 1412 dbSNP
rs1002804117 1419 dbSNP
rs185581756 1429 dbSNP
rs914823169 1430 dbSNP
rs991736494 1432 dbSNP
rs1445982102 1433 dbSNP
rs1370791998 1434 dbSNP
rs907162515 1443 dbSNP
rs57765111 1444 dbSNP
rs1004922863 1447 dbSNP
rs574121241 1465 dbSNP
rs1335807853 1469 dbSNP
rs907493185 1473 dbSNP
rs887899626 1475 dbSNP
rs1224949888 1479 dbSNP
rs1337570603 1482 dbSNP
rs1269596932 1484 dbSNP
rs1228805806 1488 dbSNP
rs951723798 1493 dbSNP
rs11809957 1494 dbSNP
rs765144584 1498 dbSNP
rs1296945100 1499 dbSNP
rs996116760 1504 dbSNP
rs1440882646 1506 dbSNP
rs1303402652 1511 dbSNP
rs1393709556 1513 dbSNP
rs932176391 1518 dbSNP
rs900688109 1523 dbSNP
rs1040999992 1532 dbSNP
rs1166870955 1556 dbSNP
rs1475454838 1563 dbSNP
rs965847005 1572 dbSNP
rs1369193988 1581 dbSNP
rs1480002170 1586 dbSNP
rs1018794410 1591 dbSNP
rs1328421991 1592 dbSNP
rs541849554 1593 dbSNP
rs574091961 1595 dbSNP
rs944979072 1596 dbSNP
rs1196523252 1597 dbSNP
rs912210394 1597 dbSNP
rs74755711 1598 dbSNP
rs72502802 1600 dbSNP
rs762967493 1601 dbSNP
rs35857418 1602 dbSNP
rs200828651 1603 dbSNP
rs34200398 1603 dbSNP
rs397778597 1603 dbSNP
rs1198426969 1605 dbSNP
rs903271802 1605 dbSNP
rs977119676 1609 dbSNP
rs945766158 1611 dbSNP
rs1440454133 1615 dbSNP
rs180736484 1617 dbSNP
rs1327731767 1622 dbSNP
rs1410093463 1628 dbSNP
rs1401785506 1631 dbSNP
rs1174233139 1656 dbSNP
rs1469172585 1662 dbSNP
rs539424490 1664 dbSNP
rs1469026886 1668 dbSNP
rs1011569230 1669 dbSNP
rs893169194 1672 dbSNP
rs1232559460 1674 dbSNP
rs989915016 1675 dbSNP
rs1182771131 1685 dbSNP
rs1439654525 1686 dbSNP
rs17029590 1687 dbSNP
rs1203590025 1696 dbSNP
rs927154922 1702 dbSNP
rs1194097413 1703 dbSNP
rs981727318 1712 dbSNP
rs1222467232 1718 dbSNP
rs1350384558 1720 dbSNP
rs971380631 1733 dbSNP
rs937606835 1734 dbSNP
rs1481644495 1735 dbSNP
rs557947234 1746 dbSNP
rs1252003608 1747 dbSNP
rs1234194767 1751 dbSNP
rs1451257659 1758 dbSNP
rs1406818285 1763 dbSNP
rs1015333970 1772 dbSNP
rs539753310 1775 dbSNP
rs1004870689 1782 dbSNP
rs776292980 1788 dbSNP
rs1306008514 1789 dbSNP
rs952112045 1797 dbSNP
rs1406913102 1801 dbSNP
rs1027672327 1804 dbSNP
rs1471242940 1809 dbSNP
rs4908558 1813 dbSNP
rs1331277027 1816 dbSNP
rs1327742566 1820 dbSNP
rs1389360885 1828 dbSNP
rs1045902923 1840 dbSNP
rs1245565842 1841 dbSNP
rs1214215291 1843 dbSNP
rs900635933 1859 dbSNP
rs556962804 1865 dbSNP
rs535094934 1866 dbSNP
rs567676696 1867 dbSNP
rs149895315 1868 dbSNP
rs41278016 1869 dbSNP
rs951672061 1871 dbSNP
rs1244652688 1877 dbSNP
rs188210893 1877 dbSNP
rs921616711 1882 dbSNP
rs974630654 1883 dbSNP
rs1428502675 1884 dbSNP
rs1041385728 1885 dbSNP
rs1019156209 1887 dbSNP
rs1478243917 1889 dbSNP
rs4908557 1890 dbSNP
rs914252036 1891 dbSNP
rs771320943 1894 dbSNP
rs1179881358 1902 dbSNP
rs1020356386 1906 dbSNP
rs1421173709 1907 dbSNP
rs1445341789 1907 dbSNP
rs1252608503 1910 dbSNP
rs1011642128 1913 dbSNP
rs1054170673 1915 dbSNP
rs937107579 1918 dbSNP
rs533729370 1924 dbSNP
rs981333808 1929 dbSNP
rs1484938424 1930 dbSNP
rs971709989 1932 dbSNP
rs1055729276 1939 dbSNP
rs1218460755 1950 dbSNP
rs1283116183 1956 dbSNP
rs1489951748 1976 dbSNP
rs1289205418 1983 dbSNP
rs1212289388 1984 dbSNP
rs907448742 1985 dbSNP
rs1212750638 1987 dbSNP
rs1278215871 1992 dbSNP
rs1270665339 1993 dbSNP
rs749824235 1997 dbSNP
rs1363432483 2002 dbSNP
rs563042807 2005 dbSNP
rs1046435562 2006 dbSNP
rs1425467701 2017 dbSNP
rs983350964 2019 dbSNP
rs1337181009 2020 dbSNP
rs1409444215 2021 dbSNP
rs563032591 2022 dbSNP
rs112694484 2027 dbSNP
rs544160955 2028 dbSNP
rs1373494018 2031 dbSNP
rs1198242664 2035 dbSNP
rs60584013 2038 dbSNP
rs749376131 2039 dbSNP
rs1201875724 2042 dbSNP
rs1415009295 2050 dbSNP
rs1306391536 2054 dbSNP
rs1273658978 2057 dbSNP
rs930395506 2058 dbSNP
rs1343418088 2060 dbSNP
rs562037583 2063 dbSNP
rs1383962200 2068 dbSNP
rs964857496 2069 dbSNP
rs868556241 2076 dbSNP
rs576798825 2079 dbSNP
rs540742890 2080 dbSNP
rs1173490382 2082 dbSNP
rs1468637266 2086 dbSNP
rs1429041768 2088 dbSNP
rs911805533 2107 dbSNP
rs1177675118 2110 dbSNP
rs773331844 2113 dbSNP
rs1269083523 2114 dbSNP
rs1412979234 2115 dbSNP
rs902696621 2118 dbSNP
rs1200472350 2123 dbSNP
rs777648305 2131 dbSNP
rs573356008 2134 dbSNP
rs1262433153 2135 dbSNP
rs558209798 2136 dbSNP
rs1313713729 2140 dbSNP
rs892765359 2141 dbSNP
rs1374150468 2142 dbSNP
rs957453806 2147 dbSNP
rs1054163932 2154 dbSNP
rs748623986 2158 dbSNP
rs186094893 2163 dbSNP
rs1467922599 2169 dbSNP
rs1362384999 2172 dbSNP
rs539986523 2176 dbSNP
rs545675706 2177 dbSNP
rs1380519064 2180 dbSNP
rs907224580 2185 dbSNP
rs1459570542 2186 dbSNP
rs575536333 2190 dbSNP
rs1242505246 2192 dbSNP
rs375162598 2196 dbSNP
rs1200911473 2200 dbSNP
rs1207268611 2212 dbSNP
rs10158949 2213 dbSNP
rs949891546 2215 dbSNP
rs907727960 2217 dbSNP
rs1035268868 2223 dbSNP
rs983300081 2226 dbSNP
rs1316392471 2228 dbSNP
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rs1352983808 2241 dbSNP
rs1288717540 2244 dbSNP
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rs1284798065 2275 dbSNP
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rs1384031429 2275 dbSNP
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rs35288271 2275 dbSNP
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rs10158065 2287 dbSNP
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rs1422289305 2294 dbSNP
rs1364420201 2297 dbSNP
rs1163391850 2302 dbSNP
rs920586935 2304 dbSNP
rs1371306019 2305 dbSNP
rs1192354083 2306 dbSNP
rs974797316 2309 dbSNP
rs1049267951 2318 dbSNP
rs1420098771 2319 dbSNP
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rs1211757704 2321 dbSNP
rs1337510967 2322 dbSNP
rs1251269942 2323 dbSNP
rs1219738149 2326 dbSNP
rs1163924448 2329 dbSNP
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rs1475337191 2343 dbSNP
rs1240900997 2344 dbSNP
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rs1019002738 2350 dbSNP
rs987972874 2351 dbSNP
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rs1252804014 2382 dbSNP
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rs1271278025 3051 dbSNP
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rs537119074 3077 dbSNP
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rs1363474343 3314 dbSNP
rs905117857 3323 dbSNP
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rs1294966742 3333 dbSNP
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rs1258623277 3347 dbSNP
rs1046346325 3355 dbSNP
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rs1348130442 3365 dbSNP
rs1323491970 3366 dbSNP
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rs1169031033 3389 dbSNP
rs1053839622 3390 dbSNP
rs1422497200 3398 dbSNP
rs936743810 3401 dbSNP
rs926811534 3403 dbSNP
rs1486565704 3414 dbSNP
rs1244418849 3415 dbSNP
rs1220174012 3416 dbSNP
rs949231713 3417 dbSNP
rs1274938000 3418 dbSNP
rs1196581578 3421 dbSNP
rs1317020941 3430 dbSNP
rs981383371 3431 dbSNP
rs886969901 3432 dbSNP
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rs1274405612 3436 dbSNP
rs1338636866 3440 dbSNP
rs1397380497 3443 dbSNP
rs1329844636 3444 dbSNP
rs554268080 3446 dbSNP
rs918138634 3448 dbSNP
rs1384039189 3453 dbSNP
rs983007241 3467 dbSNP
rs1429996414 3470 dbSNP
rs1157180613 3475 dbSNP
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rs950350530 3478 dbSNP
rs920562322 3479 dbSNP
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rs1025938897 3484 dbSNP
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rs558490803 3490 dbSNP
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rs1378282609 3539 dbSNP
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rs1017423192 3589 dbSNP
rs1285862303 3593 dbSNP
rs1410970042 3603 dbSNP
rs1439081070 3604 dbSNP
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rs1025295935 3609 dbSNP
rs1007830356 3617 dbSNP
rs886914374 3619 dbSNP
rs575380737 3623 dbSNP
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rs988264944 3656 dbSNP
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rs747431619 3659 dbSNP
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rs1216047032 3665 dbSNP
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rs969439900 3665 dbSNP
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rs191271121 3668 dbSNP
rs1475406539 3681 dbSNP
rs1263049979 3683 dbSNP
rs1388637618 3691 dbSNP
rs1243171033 3693 dbSNP
rs936763670 3699 dbSNP
rs186811700 3701 dbSNP
rs570772341 3703 dbSNP
rs1026015266 3708 dbSNP
rs1450904236 3713 dbSNP
rs780561191 3718 dbSNP
rs995324827 3720 dbSNP
rs552522220 3726 dbSNP
rs530953218 3727 dbSNP
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rs1384964242 3734 dbSNP
rs1449348694 3735 dbSNP
rs1291487915 3738 dbSNP
rs1456384955 3739 dbSNP
rs1210348966 3750 dbSNP
rs1367818293 3752 dbSNP
rs1165436278 3754 dbSNP
rs949552822 3755 dbSNP
rs918097125 3760 dbSNP
rs1341385330 3761 dbSNP
rs1476054654 3762 dbSNP
rs34870054 3762 dbSNP
rs183037361 3770 dbSNP
rs745465237 3771 dbSNP
rs1230364671 3776 dbSNP
rs548235406 3777 dbSNP
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rs529840421 3780 dbSNP
rs1215967346 3781 dbSNP
rs368344072 3781 dbSNP
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rs1351671509 3786 dbSNP
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rs1389992015 3796 dbSNP
rs889081233 3797 dbSNP
rs1051772266 3799 dbSNP
rs1170255527 3802 dbSNP
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rs559092466 3809 dbSNP
rs538601045 3814 dbSNP
rs1450457450 3826 dbSNP
rs532418782 3828 dbSNP
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rs1456726184 3852 dbSNP
rs1257882323 3861 dbSNP
rs377342830 3861 dbSNP
rs1196743179 3863 dbSNP
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rs1252679528 3875 dbSNP
rs1230466524 3878 dbSNP
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rs1030175576 3884 dbSNP
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rs1304078266 3886 dbSNP
rs543404731 3892 dbSNP
rs925473343 3896 dbSNP
rs1374557702 3903 dbSNP
rs576099723 3918 dbSNP
rs1009486681 3923 dbSNP
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rs759236997 3931 dbSNP
rs1398932285 3933 dbSNP
rs1207256575 3934 dbSNP
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rs559411982 3940 dbSNP
rs1395704788 3946 dbSNP
rs1175584166 3953 dbSNP
rs1277722622 3954 dbSNP
rs1217627845 3955 dbSNP
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rs77930824 3984 dbSNP
rs991837638 3996 dbSNP
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rs575108531 4000 dbSNP
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rs150203284 4010 dbSNP
rs1047253624 4012 dbSNP
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rs920200959 4024 dbSNP
rs527806267 4025 dbSNP
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rs7540913 4037 dbSNP
rs889203473 4038 dbSNP
rs1175647652 4049 dbSNP
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rs370876132 4075 dbSNP
rs1380249742 4079 dbSNP
rs1159612168 4087 dbSNP
rs1471366247 4088 dbSNP
rs1431025585 4097 dbSNP
rs1375210371 4098 dbSNP
rs534186808 4102 dbSNP
rs193086025 4113 dbSNP
rs142340365 4117 dbSNP
rs1212426031 4119 dbSNP
rs954526650 4127 dbSNP
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rs1283476661 4133 dbSNP
rs1224213762 4138 dbSNP
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rs1030164436 4145 dbSNP
rs1282278267 4161 dbSNP
rs1172850601 4164 dbSNP
rs892485854 4167 dbSNP
rs189194758 4175 dbSNP
rs767279041 4177 dbSNP
rs1398262434 4180 dbSNP
rs1249066645 4192 dbSNP
rs77336369 4195 dbSNP
rs1319576161 4196 dbSNP
rs1403015239 4202 dbSNP
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rs1164715206 4205 dbSNP
rs763100036 4206 dbSNP
rs750611703 4208 dbSNP
rs1045214414 4209 dbSNP
rs948261991 4213 dbSNP
rs569902546 4215 dbSNP
rs1241072722 4216 dbSNP
rs183340653 4217 dbSNP
rs566942306 4221 dbSNP
rs969753651 4229 dbSNP
rs992339934 4230 dbSNP
rs1212863594 4231 dbSNP
rs1335193106 4237 dbSNP
rs1314118434 4245 dbSNP
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rs1023675796 4250 dbSNP
rs536310021 4251 dbSNP
rs1270918625 4254 dbSNP
rs1228060016 4291 dbSNP
rs1327160740 4295 dbSNP
rs765344445 4301 dbSNP
rs565570170 4308 dbSNP
rs576821780 4311 dbSNP
rs1462295183 4318 dbSNP
rs1410917854 4319 dbSNP
rs962621787 4325 dbSNP
rs1168964853 4332 dbSNP
rs547169761 4338 dbSNP
rs1407926995 4344 dbSNP
rs1295330332 4351 dbSNP
rs1379086321 4355 dbSNP
rs532352156 4361 dbSNP
rs1018243096 4362 dbSNP
rs149443960 4364 dbSNP
rs377093290 4364 dbSNP
rs771331367 4381 dbSNP
rs1047199060 4384 dbSNP
rs1192858178 4385 dbSNP
rs994273357 4389 dbSNP
rs1274882418 4391 dbSNP
rs1030398975 4399 dbSNP
rs1307177838 4401 dbSNP
rs1360149976 4404 dbSNP
rs1216430524 4410 dbSNP
rs898682337 4416 dbSNP
rs1365490964 4418 dbSNP
rs1303325587 4420 dbSNP
rs1030970908 4421 dbSNP
rs892438137 4421 dbSNP
rs998028246 4421 dbSNP
rs1038993000 4422 dbSNP
rs1409050823 4427 dbSNP
rs1353585630 4446 dbSNP
rs942968541 4457 dbSNP
rs1472852125 4469 dbSNP
rs904112245 4474 dbSNP
rs565177854 4476 dbSNP
rs375140947 4477 dbSNP
rs1175317700 4479 dbSNP
rs948226183 4479 dbSNP
rs1050135995 4481 dbSNP
rs1480162823 4491 dbSNP
rs933046292 4497 dbSNP
rs1484096754 4498 dbSNP
rs1237910911 4502 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 79707.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aguugagacguuuccUUCUUcu 5'
                         |||::  
Target 5' -------guggcuuuAAGGGca 3'
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Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_024654 | 3UTR | GCAUUUAGAAGAAGGACAAGAUUGGACUUUUUAUCAUUUCCACAGUCUGUUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_024654 | 3UTR | AGAAGGACAAGAUUGGACUUUUUAUCAUUUCCACAGUCUGUUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000377705.5 | 3UTR | GUGGCUUUAAGGGCAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
169 hsa-miR-4778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT199338 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT203028 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT260646 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT336468 SRP9 signal recognition particle 9 2 2
MIRT389212 SERTAD2 SERTA domain containing 2 2 2
MIRT441814 TENM1 teneurin transmembrane protein 1 2 2
MIRT444029 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT454171 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT469663 RABEPK Rab9 effector protein with kelch motifs 2 2
MIRT495579 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT498340 PRELID2 PRELI domain containing 2 2 2
MIRT498696 LYRM2 LYR motif containing 2 2 6
MIRT504156 OPN5 opsin 5 2 4
MIRT506321 OTUD4 OTU deubiquitinase 4 2 4
MIRT507608 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT525431 PROX2 prospero homeobox 2 2 2
MIRT526973 PAX7 paired box 7 2 2
MIRT527814 TMEM74B transmembrane protein 74B 2 2
MIRT527960 MTAP methylthioadenosine phosphorylase 2 2
MIRT528083 NOL9 nucleolar protein 9 2 2
MIRT528480 STAMBPL1 STAM binding protein like 1 2 2
MIRT528947 PNMA5 paraneoplastic Ma antigen family member 5 2 2
MIRT530687 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT531733 SLC2A9 solute carrier family 2 member 9 2 2
MIRT532445 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT533331 UNK unkempt family zinc finger 2 2
MIRT534205 SLC38A9 solute carrier family 38 member 9 2 2
MIRT534322 SHISA6 shisa family member 6 2 2
MIRT535197 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT538076 DIAPH2 diaphanous related formin 2 2 2
MIRT539250 ANKRD50 ankyrin repeat domain 50 2 2
MIRT548733 CREBRF CREB3 regulatory factor 2 2
MIRT556406 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT559576 AP1AR adaptor related protein complex 1 associated regulatory protein 2 2
MIRT567661 ERGIC2 ERGIC and golgi 2 2 2
MIRT572750 FAM204A family with sequence similarity 204 member A 2 2
MIRT609355 ZNF664 zinc finger protein 664 2 2
MIRT611194 TMEM105 transmembrane protein 105 2 2
MIRT611545 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT611690 NODAL nodal growth differentiation factor 2 2
MIRT611810 FCRL4 Fc receptor like 4 2 2
MIRT612746 MYOCD myocardin 2 2
MIRT614177 FAM53B family with sequence similarity 53 member B 2 2
MIRT614431 TAZ tafazzin 2 2
MIRT614586 SDC1 syndecan 1 2 2
MIRT615547 TNFSF15 TNF superfamily member 15 2 2
MIRT615872 BRD3 bromodomain containing 3 2 2
MIRT615970 ASCL1 achaete-scute family bHLH transcription factor 1 2 2
MIRT616024 PRRG4 proline rich and Gla domain 4 2 4
MIRT616242 NFIC nuclear factor I C 2 2
MIRT616282 HMGB1 high mobility group box 1 2 2
MIRT616674 PRR15 proline rich 15 2 2
MIRT618302 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT618657 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT618754 SLC38A5 solute carrier family 38 member 5 2 2
MIRT619505 TXLNB taxilin beta 2 2
MIRT619545 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619605 MKKS McKusick-Kaufman syndrome 2 2
MIRT619804 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619923 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620442 SEMA3E semaphorin 3E 2 4
MIRT620730 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625345 TAPBP TAP binding protein 2 2
MIRT627510 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT632584 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636901 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT637873 UTP6 UTP6, small subunit processome component 2 2
MIRT639011 ABI2 abl interactor 2 2 2
MIRT639054 FPR1 formyl peptide receptor 1 2 2
MIRT639085 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639589 RGS5 regulator of G protein signaling 5 2 2
MIRT639718 NPRL3 NPR3 like, GATOR1 complex subunit 2 2
MIRT639904 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640392 ZNF785 zinc finger protein 785 2 2
MIRT640786 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT641290 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641442 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT642426 STAT3 signal transducer and activator of transcription 3 2 2
MIRT642682 KRT74 keratin 74 2 2
MIRT643362 TRIM10 tripartite motif containing 10 2 2
MIRT643982 DUSP28 dual specificity phosphatase 28 2 2
MIRT644466 ZNF747 zinc finger protein 747 2 2
MIRT644561 SPOP speckle type BTB/POZ protein 2 2
MIRT645748 FAM213A family with sequence similarity 213 member A 2 2
MIRT646737 FADS1 fatty acid desaturase 1 2 2
MIRT647446 SIX6 SIX homeobox 6 2 2
MIRT648317 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT649327 POLG DNA polymerase gamma, catalytic subunit 2 2
MIRT649453 WDR70 WD repeat domain 70 2 2
MIRT650066 CCDC134 coiled-coil domain containing 134 2 2
MIRT650156 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT650317 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650429 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT651325 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651843 USP13 ubiquitin specific peptidase 13 2 2
MIRT652532 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT652816 TARDBP TAR DNA binding protein 2 2
MIRT652971 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT653466 SLC5A12 solute carrier family 5 member 12 2 4
MIRT653568 SLC35B3 solute carrier family 35 member B3 2 2
MIRT655678 NUMBL NUMB like, endocytic adaptor protein 2 2
MIRT656785 KPNA4 karyopherin subunit alpha 4 2 2
MIRT656798 KNTC1 kinetochore associated 1 2 2
MIRT656988 KDM5A lysine demethylase 5A 2 2
MIRT657292 HOXB5 homeobox B5 2 2
MIRT657497 HBEGF heparin binding EGF like growth factor 2 4
MIRT658012 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT658146 STXBP2 syntaxin binding protein 2 2 2
MIRT658259 FAXC failed axon connections homolog 2 2
MIRT659051 DGKH diacylglycerol kinase eta 2 2
MIRT659171 DCTN3 dynactin subunit 3 2 2
MIRT659936 CACHD1 cache domain containing 1 2 2
MIRT660079 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT660167 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660292 BICC1 BicC family RNA binding protein 1 2 2
MIRT660317 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT660340 BCAT1 branched chain amino acid transaminase 1 2 2
MIRT660447 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT661634 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662438 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664202 TBCA tubulin folding cofactor A 2 2
MIRT666436 SH2B3 SH2B adaptor protein 3 2 2
MIRT666666 RBM47 RNA binding motif protein 47 2 4
MIRT669253 C4orf36 chromosome 4 open reading frame 36 2 2
MIRT669502 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT693912 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700435 PURB purine rich element binding protein B 2 2
MIRT702857 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708857 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709030 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT709609 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT709810 AR androgen receptor 2 2
MIRT709872 A1CF APOBEC1 complementation factor 2 2
MIRT710208 ENAH ENAH, actin regulator 2 2
MIRT710964 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711173 EMCN endomucin 2 2
MIRT711219 RETSAT retinol saturase 2 2
MIRT711345 FMNL2 formin like 2 2 2
MIRT711441 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT711631 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711823 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT712164 SURF4 surfeit 4 2 2
MIRT712632 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713692 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT714906 CHMP3 charged multivesicular body protein 3 2 2
MIRT715161 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT715430 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT715660 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT715968 FADS3 fatty acid desaturase 3 2 2
MIRT716203 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716234 SRSF12 serine and arginine rich splicing factor 12 2 2
MIRT716251 PALM2 paralemmin 2 2 2
MIRT716375 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT716490 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT716744 APOL6 apolipoprotein L6 2 2
MIRT717624 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT718480 TMEM151A transmembrane protein 151A 2 2
MIRT718805 PRKCB protein kinase C beta 2 2
MIRT719276 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719432 NPTX2 neuronal pentraxin 2 2 2
MIRT721011 ZNF619 zinc finger protein 619 2 2
MIRT721819 HEATR5A HEAT repeat containing 5A 2 2
MIRT721997 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT723143 METTL24 methyltransferase like 24 2 2
MIRT723213 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT723427 MC2R melanocortin 2 receptor 2 2
MIRT723436 ADI1 acireductone dioxygenase 1 2 2
MIRT723542 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT724474 MMD monocyte to macrophage differentiation associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4778-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4778-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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