miRTarBase - #MIRT528505


—
pre-miRNA Information
pre-miRNA hsa-mir-4301   
Genomic Coordinates chr11: 113450023 - 113450088
Description Homo sapiens miR-4301 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4301
Sequence 11| UCCCACUACUUCACUUGUGA |30
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs184176277 2 dbSNP
rs1191324913 13 dbSNP
rs1369198005 15 dbSNP
rs1036973189 16 dbSNP
rs944900541 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HTR7   
Synonyms 5-HT7
Description 5-hydroxytryptamine receptor 7
Transcript NM_019860   
Other Transcripts NM_019859 , NM_000872   
Expression
Putative miRNA Targets on HTR7
3'UTR of HTR7
(miRNA target sites are highlighted)		 
>HTR7|NM_019860|3'UTR
   1 GACAAAATGCTGACTACTGTAGAAAAAAAGGTCATGATTCATGATTGAAAGCAGAACAATGGAGATGAAATAAACAAGGC
  81 AAAATAGAGGTGGAAACAGAAGGAAGTCATTTGCTGAGTCTGCAGAATGGAATGCAGCTTCTGTCCTTTCTTGGGATGTC
 161 TAAAACATGACAAACAGGGTGATCTGTTGTACACACTATCTTATGAGGGAGATGGTGACTTCTCCTTTTTTCTGTGGATC
 241 AGTGCTATTGTGTGTTCTCAGTTTAAGATAGCAGATCATCTCAGCAGTAAGCACACCAACAGAACTGAGTTCCAGAAAGG
 321 AAGCAGTTTCTGGTGCTTTGCATATGTCCAAATCCATGCAAGTGGGAGAAAGTTCCAGTGCACACTTCCCATGCTTCTGA
 401 GTCTAGGCGTTGTGGTGAATATGCAGGAATCATTCATGAGACAGAATGTATTTTGTTGTATGACAGAAGGCTTTTCCAAG
 481 CAAACTGCGGTGAGCGTAGTGTTGAATATGTTGCATGTCCATGTTAGAAAACAGAATCCAGTCATCAGCTAATACAAATG
 561 ATTTCCCAGAGCAGTGTTTGTTTCAAGCTTCTGTCAAATAGTTTGGCTTTTCTGCAGGGTCTCTGTGATTTCCCCACCTA
 641 TGTACTTTTCTGTGTTAACTCACTTATTATGGTATAACTCAGGAACAGGTCTCAGGATGGAGAGAAGCATACAACATGAG
 721 CAAAGCTTTTTCTCGTGCTCTGAAGGGTCTTGAGAGGGGAGTGGGATGCCTTCTGTGAGGATTTTTATCGCAGTGAAGCT
 801 CAAGTGGTACCCAACTGCGTTGTAATTAACATGATTATTGGCATGTTTTTGACTCTCATTTTCTACAAGGCTGCAGTGGG
 881 CCCACCCATGGGCTGGCCCATAACTGTATGTTATGTGGAAGAAGTGTGGGAATGATGGGTTTTCCATGAAATGTGATGCT
 961 TCTGGAGATGGGGCATAAACATGTTCATTCTTGTTGAGCTGCATTGTGTTAAACCAAATTGTGTGAAGCGAGGTCACCTG
1041 GACCACTCTTGGGAAATGCTTCAGAACACCAGTCTGTTCCTTCTAGAGAATTTGTTTTTGTGTTCTATGTATCTTAAATC
1121 AAATGTGTGCCTAAGCAATTCTGTCCTCTGATTCCCACCCCTACCCACCAAAAAATGGTAGACATGAAAGGCAGGTGAGG
1201 AAACAGAAAAGGTCTCTTTGCAGATATATATTTTTTAAATGGCACTATGTAGTAATTAAGAGCTAAGGAGACAGAAAGAC
1281 AGTAGATGAGAATAGAAGAGTACCTGTACCTACAAGGGGAAAAATGAATGCAATTCTTTATTTGATAAGAGTGAACTGAA
1361 AGAGAATATTATTTTCCTACAATAAAGCAAGCTGTCCTCTCACAGGATAAAGTGGAATTCTGACATGGATTATGGACTTC
1441 TTCTAACTCCCATTGACATTGCTTCTTACCAGACATGGGGAAAAGCTACCTTTCCTGAAAGGGGAGGAGGGCACTGTCCT
1521 TTCAGACAAAGCTTGTACAAATTCCTGAACCGCAAATTTGCTGAAGTGACCGTATATATTATATTCATAATTTAAATGAT
1601 TATTTATGGTCAGATACATATTGTTAAACTTGAAAATGTTTTATTACATTACATCAAATAAAGTTTATTTGTAGCTGAAA
1681 TAAAGCAACGTAAGTAACAATTTTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agUGUUCACUUCAUCACCCu 5'
            ||||| |  | |||||| 
Target 5' ctACAAG-GCTGCAGTGGGc 3'
 863 - 881 129.00 -15.20
2 
miRNA  3' aguguucacuucaUCACCCu 5'
                       |||||| 
Target 5' ccaaatccatgcaAGTGGGa 3'
 348 - 367 120.00 -10.80
3 
miRNA  3' aguguucacuucaUCACCCu 5'
                       |||||| 
Target 5' gtcttgagaggggAGTGGGa 3'
 747 - 766 120.00 -17.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
778468 5192 ClinVar
COSN30621408 23 COSMIC
COSN20474722 116 COSMIC
COSN10075083 139 COSMIC
COSN18823488 464 COSMIC
COSN16437111 481 COSMIC
COSN20243297 540 COSMIC
COSN22856357 653 COSMIC
COSN17858887 676 COSMIC
COSN10075082 767 COSMIC
COSN16214742 832 COSMIC
COSN21203663 1016 COSMIC
COSN25850511 1301 COSMIC
COSN8937248 1430 COSMIC
COSN15731712 1500 COSMIC
COSN24812329 1680 COSMIC
COSN1506581 1710 COSMIC
COSN15334856 1846 COSMIC
COSN5293365 1926 COSMIC
COSN26862543 2187 COSMIC
COSN15752677 2495 COSMIC
COSN29490844 2708 COSMIC
COSN6606194 2769 COSMIC
COSN30400791 2957 COSMIC
COSN10075080 3049 COSMIC
COSN24273850 3487 COSMIC
COSN23606414 3534 COSMIC
COSN8725825 3570 COSMIC
COSN27119187 3695 COSMIC
COSN8725824 3774 COSMIC
COSN22616255 4102 COSMIC
COSN1124302 4249 COSMIC
COSN17677624 4412 COSMIC
COSN10075079 4623 COSMIC
COSN17061196 4627 COSMIC
COSN5822431 4761 COSMIC
COSN19670749 4762 COSMIC
COSN30702988 4867 COSMIC
COSM237532 4907 COSMIC
COSM9457554 4921 COSMIC
COSM7236520 4936 COSMIC
COSM5512684 4967 COSMIC
COSM3675924 4973 COSMIC
COSM5425251 4973 COSMIC
COSM8488574 4994 COSMIC
COSN30651465 5084 COSMIC
COSN28868303 5085 COSMIC
COSN28770391 5116 COSMIC
COSM5477330 5137 COSMIC
COSM370710 5155 COSMIC
COSM6537075 5172 COSMIC
COSM6683050 5178 COSMIC
COSM6889145 5189 COSMIC
COSM1969069 5192 COSMIC
COSM7559556 5193 COSMIC
COSM281804 5194 COSMIC
COSM8052775 5198 COSMIC
COSM6488427 5205 COSMIC
COSM3441446 5216 COSMIC
COSM6683067 5219 COSMIC
COSM7856450 5224 COSMIC
COSM7371657 5228 COSMIC
COSM8620263 5229 COSMIC
COSM5546372 5230 COSMIC
COSM4931948 5237 COSMIC
COSN24389945 5328 COSMIC
COSN28642003 5458 COSMIC
COSN1506580 5466 COSMIC
COSN5888928 5467 COSMIC
COSN5822430 5487 COSMIC
COSN4896243 5490 COSMIC
COSN26056249 5526 COSMIC
COSN1506579 5716 COSMIC
COSN16371137 5866 COSMIC
COSN23073566 6002 COSMIC
COSN1124301 6170 COSMIC
COSN30573359 6254 COSMIC
COSM5511349 6296 COSMIC
COSM5826830 6297 COSMIC
COSM1638682 6305 COSMIC
COSM921338 6321 COSMIC
COSM6683059 6328 COSMIC
COSM9018590 6329 COSMIC
COSM4016553 6334 COSMIC
COSM3441444 6335 COSMIC
COSN26596304 6361 COSMIC
COSN30469242 6367 COSMIC
COSN30185182 6383 COSMIC
COSN31574928 6401 COSMIC
COSN30468799 6435 COSMIC
COSN4695711 6446 COSMIC
COSN31570402 6449 COSMIC
COSN32053006 6455 COSMIC
COSN30186645 6467 COSMIC
COSN10075078 6480 COSMIC
COSN30108132 6489 COSMIC
COSN28399730 6538 COSMIC
COSN7074868 6576 COSMIC
COSN30161450 6587 COSMIC
COSN28187578 6670 COSMIC
COSN17037617 6706 COSMIC
COSN30544295 6714 COSMIC
COSN29854944 6776 COSMIC
COSN31516895 6793 COSMIC
COSN25728116 6794 COSMIC
COSN31568560 6839 COSMIC
COSN31516309 6847 COSMIC
COSN30544023 6854 COSMIC
COSN26638896 6860 COSMIC
COSN26650673 6905 COSMIC
COSN20107386 6916 COSMIC
COSN26564143 6917 COSMIC
COSN26595992 6993 COSMIC
COSN7074867 7095 COSMIC
COSN22037073 7131 COSMIC
COSN28780048 7263 COSMIC
COSN29830726 7440 COSMIC
COSN31556387 7502 COSMIC
COSN32056977 7516 COSMIC
COSN31556281 7521 COSMIC
COSN8532583 7541 COSMIC
COSN31527842 7581 COSMIC
COSN31549251 7594 COSMIC
COSN22691532 7741 COSMIC
COSN31551807 7802 COSMIC
COSN6606193 7868 COSMIC
COSN31515694 7940 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775442263 1 dbSNP
rs1409829067 2 dbSNP
rs1018157637 5 dbSNP
rs767564862 12 dbSNP
rs1449522358 17 dbSNP
rs759528885 20 dbSNP
rs1391553072 30 dbSNP
rs774894943 36 dbSNP
rs771404329 37 dbSNP
rs1237783373 38 dbSNP
rs1203594376 42 dbSNP
rs749693622 46 dbSNP
rs1442998849 47 dbSNP
rs758286767 48 dbSNP
rs1006725574 56 dbSNP
rs1360686764 61 dbSNP
rs1345148098 62 dbSNP
rs1302959895 64 dbSNP
rs1312543415 68 dbSNP
rs371249893 72 dbSNP
rs1261147164 73 dbSNP
rs558990873 82 dbSNP
rs1029652745 97 dbSNP
rs1209306261 101 dbSNP
rs1241557261 102 dbSNP
rs1402471046 106 dbSNP
rs752640553 110 dbSNP
rs1010641794 130 dbSNP
rs1426206919 134 dbSNP
rs1480309578 138 dbSNP
rs891902711 144 dbSNP
rs538482354 148 dbSNP
rs569800247 154 dbSNP
rs1458182162 158 dbSNP
rs574265872 167 dbSNP
rs1054924491 171 dbSNP
rs936195105 179 dbSNP
rs1294920411 193 dbSNP
rs1345798980 201 dbSNP
rs1222651950 204 dbSNP
rs905997023 210 dbSNP
rs765065021 212 dbSNP
rs1330989956 247 dbSNP
rs1224209562 249 dbSNP
rs1044670679 252 dbSNP
rs199998615 259 dbSNP
rs917496310 262 dbSNP
rs991865528 266 dbSNP
rs1490261052 270 dbSNP
rs929611565 278 dbSNP
rs759192646 299 dbSNP
rs1240333167 301 dbSNP
rs1473125902 304 dbSNP
rs184902168 305 dbSNP
rs1406512740 317 dbSNP
rs536436491 320 dbSNP
rs536095886 329 dbSNP
rs1279582939 334 dbSNP
rs962522264 340 dbSNP
rs1018104268 342 dbSNP
rs1472768066 343 dbSNP
rs1300914013 345 dbSNP
rs1352042358 346 dbSNP
rs192550387 351 dbSNP
rs760425642 355 dbSNP
rs1260028835 356 dbSNP
rs955321632 362 dbSNP
rs1292526029 365 dbSNP
rs1219349063 389 dbSNP
rs1361836026 391 dbSNP
rs1254260954 392 dbSNP
rs1269004014 393 dbSNP
rs1483578653 396 dbSNP
rs1181591212 402 dbSNP
rs1029976362 406 dbSNP
rs1010256709 409 dbSNP
rs547030303 414 dbSNP
rs1385245574 419 dbSNP
rs1423473170 429 dbSNP
rs1161273802 430 dbSNP
rs956205966 438 dbSNP
rs1033105491 448 dbSNP
rs1000647745 449 dbSNP
rs1467868741 454 dbSNP
rs1450078363 464 dbSNP
rs1402051592 466 dbSNP
rs189322314 470 dbSNP
rs1408902475 474 dbSNP
rs549951831 484 dbSNP
rs1164991732 485 dbSNP
rs1044616673 488 dbSNP
rs551427511 492 dbSNP
rs532611230 497 dbSNP
rs1340382388 500 dbSNP
rs1181553928 508 dbSNP
rs563863284 531 dbSNP
rs1271276099 532 dbSNP
rs1240308582 534 dbSNP
rs544129153 539 dbSNP
rs929668374 540 dbSNP
rs1443478788 544 dbSNP
rs1181254867 546 dbSNP
rs1307054414 553 dbSNP
rs377709930 554 dbSNP
rs918210745 555 dbSNP
rs1230461249 579 dbSNP
rs1357712556 583 dbSNP
rs1314742303 591 dbSNP
rs1415974090 604 dbSNP
rs1450979044 611 dbSNP
rs771549555 612 dbSNP
rs1337295917 616 dbSNP
rs1038039400 620 dbSNP
rs1331699773 629 dbSNP
rs530462184 641 dbSNP
rs1327135312 649 dbSNP
rs1226890314 650 dbSNP
rs1268654189 653 dbSNP
rs1347569309 659 dbSNP
rs1204789430 664 dbSNP
rs1263024763 666 dbSNP
rs141626643 669 dbSNP
rs1211146679 671 dbSNP
rs941149209 683 dbSNP
rs1191951499 692 dbSNP
rs147991738 693 dbSNP
rs773682630 694 dbSNP
rs1176953364 695 dbSNP
rs797001166 695 dbSNP
rs749789445 698 dbSNP
rs1322474426 699 dbSNP
rs922558666 702 dbSNP
rs775803950 722 dbSNP
rs1161414974 726 dbSNP
rs572379804 728 dbSNP
rs2420203 729 dbSNP
rs1177944727 731 dbSNP
rs1480434561 739 dbSNP
rs1231208662 745 dbSNP
rs1033465060 753 dbSNP
rs746193884 760 dbSNP
rs1223894928 762 dbSNP
rs1485900478 765 dbSNP
rs1204107641 776 dbSNP
rs1000188160 787 dbSNP
rs1490724429 795 dbSNP
rs1452672678 799 dbSNP
rs970157180 806 dbSNP
rs1479342634 813 dbSNP
rs1291738983 821 dbSNP
rs1364382553 824 dbSNP
rs1244228697 830 dbSNP
rs748786342 832 dbSNP
rs1156945737 850 dbSNP
rs781561937 851 dbSNP
rs757452808 862 dbSNP
rs1405732313 863 dbSNP
rs184440415 864 dbSNP
rs576161342 874 dbSNP
rs1412128673 889 dbSNP
rs895955463 901 dbSNP
rs143489316 909 dbSNP
rs192774521 915 dbSNP
rs573634034 922 dbSNP
rs1038473608 951 dbSNP
rs1290656572 962 dbSNP
rs1489798213 968 dbSNP
rs1178773574 971 dbSNP
rs941013702 972 dbSNP
rs1364885992 973 dbSNP
rs1179610892 974 dbSNP
rs910988821 975 dbSNP
rs1425395052 984 dbSNP
rs1049440781 987 dbSNP
rs1421460930 988 dbSNP
rs867053372 989 dbSNP
rs1463823967 991 dbSNP
rs141256973 1013 dbSNP
rs1373094006 1017 dbSNP
rs1390101988 1024 dbSNP
rs1315452041 1037 dbSNP
rs553628506 1038 dbSNP
rs1360859872 1040 dbSNP
rs1384344310 1045 dbSNP
rs933833394 1047 dbSNP
rs533575272 1051 dbSNP
rs1290540021 1060 dbSNP
rs138746773 1061 dbSNP
rs187926408 1064 dbSNP
rs1251637960 1065 dbSNP
rs1192962624 1079 dbSNP
rs988658076 1080 dbSNP
rs1274883086 1085 dbSNP
rs1445312576 1086 dbSNP
rs1183109214 1090 dbSNP
rs1480842193 1102 dbSNP
rs1383595290 1107 dbSNP
rs182686016 1113 dbSNP
rs745656829 1115 dbSNP
rs1171401670 1116 dbSNP
rs1220828843 1118 dbSNP
rs1354251563 1127 dbSNP
rs1489559528 1130 dbSNP
rs1339258657 1131 dbSNP
rs568969150 1135 dbSNP
rs1452696702 1143 dbSNP
rs1215544104 1153 dbSNP
rs1313670145 1153 dbSNP
rs978779723 1162 dbSNP
rs1314738450 1178 dbSNP
rs1303004390 1192 dbSNP
rs970021158 1193 dbSNP
rs1306694051 1195 dbSNP
rs1344264167 1197 dbSNP
rs1280818597 1201 dbSNP
rs60844040 1202 dbSNP
rs992875065 1203 dbSNP
rs57768581 1214 dbSNP
rs146698989 1219 dbSNP
rs1026935117 1220 dbSNP
rs1288048793 1222 dbSNP
rs993670663 1225 dbSNP
rs558256397 1230 dbSNP
rs1343648139 1235 dbSNP
rs1315636184 1239 dbSNP
rs1178578240 1244 dbSNP
rs1179091903 1260 dbSNP
rs1430451074 1265 dbSNP
rs1469706751 1267 dbSNP
rs1335328298 1269 dbSNP
rs369230694 1270 dbSNP
rs1016448163 1271 dbSNP
rs1289084729 1272 dbSNP
rs1428603312 1273 dbSNP
rs754973716 1275 dbSNP
rs1360889026 1281 dbSNP
rs1197395843 1286 dbSNP
rs1216545594 1289 dbSNP
rs1005188412 1291 dbSNP
rs753637190 1297 dbSNP
rs142549116 1301 dbSNP
rs1049470457 1303 dbSNP
rs1186259886 1314 dbSNP
rs1216636869 1316 dbSNP
rs1485131983 1317 dbSNP
rs1241717847 1323 dbSNP
rs1484985565 1329 dbSNP
rs1258150300 1332 dbSNP
rs56060409 1335 dbSNP
rs1203840284 1337 dbSNP
rs1480324320 1338 dbSNP
rs1174891462 1341 dbSNP
rs1410893980 1342 dbSNP
rs933781496 1351 dbSNP
rs900912015 1369 dbSNP
rs1053390579 1371 dbSNP
rs934491769 1379 dbSNP
rs925878210 1386 dbSNP
rs1345897957 1389 dbSNP
rs1272968619 1393 dbSNP
rs565238263 1400 dbSNP
rs370173210 1409 dbSNP
rs563473777 1409 dbSNP
rs1283596857 1414 dbSNP
rs1341021650 1422 dbSNP
rs543240861 1423 dbSNP
rs1380296129 1430 dbSNP
rs915954907 1436 dbSNP
rs1292855875 1443 dbSNP
rs545071275 1446 dbSNP
rs1303213719 1451 dbSNP
rs1235081436 1455 dbSNP
rs1470770985 1456 dbSNP
rs1177168789 1465 dbSNP
rs1453600947 1468 dbSNP
rs751547688 1472 dbSNP
rs1405648378 1476 dbSNP
rs1406535148 1485 dbSNP
rs1174334796 1486 dbSNP
rs192091620 1490 dbSNP
rs369859149 1491 dbSNP
rs542440784 1503 dbSNP
rs1365850073 1514 dbSNP
rs1026381037 1515 dbSNP
rs1321280483 1521 dbSNP
rs74344012 1524 dbSNP
rs1442747626 1526 dbSNP
rs766325757 1528 dbSNP
rs963548869 1532 dbSNP
rs553665520 1534 dbSNP
rs1248353289 1536 dbSNP
rs1427266218 1538 dbSNP
rs1359056836 1539 dbSNP
rs534051779 1553 dbSNP
rs1016479170 1560 dbSNP
rs1184620658 1561 dbSNP
rs1204424754 1585 dbSNP
rs1231741578 1618 dbSNP
rs1437243078 1622 dbSNP
rs1460583235 1633 dbSNP
rs1385332960 1634 dbSNP
rs1240933227 1635 dbSNP
rs1443587791 1638 dbSNP
rs71479057 1647 dbSNP
rs1339556678 1649 dbSNP
rs889362523 1652 dbSNP
rs1250280465 1662 dbSNP
rs1027978262 1666 dbSNP
rs997847700 1667 dbSNP
rs900940276 1670 dbSNP
rs1052848932 1671 dbSNP
rs1382167047 1673 dbSNP
rs934500287 1675 dbSNP
rs904319197 1678 dbSNP
rs1382267452 1679 dbSNP
rs1214388487 1680 dbSNP
rs34426334 1694 dbSNP
rs1256689272 1700 dbSNP
rs1463006651 1715 dbSNP
rs1042910415 1717 dbSNP
rs1335047382 1730 dbSNP
rs1243144845 1735 dbSNP
rs376107560 1746 dbSNP
rs1397224283 1748 dbSNP
rs1297716138 1776 dbSNP
rs187397279 1779 dbSNP
rs150074351 1780 dbSNP
rs1370751559 1781 dbSNP
rs1057179972 1783 dbSNP
rs1470893427 1785 dbSNP
rs1337316232 1792 dbSNP
rs938673657 1793 dbSNP
rs1444481296 1807 dbSNP
rs1394434059 1808 dbSNP
rs1382992951 1826 dbSNP
rs919349021 1827 dbSNP
rs569005957 1828 dbSNP
rs1443235730 1829 dbSNP
rs1430304378 1832 dbSNP
rs1276651378 1841 dbSNP
rs1326106378 1852 dbSNP
rs755065778 1866 dbSNP
rs773058087 1867 dbSNP
rs767213519 1891 dbSNP
rs761163571 1892 dbSNP
rs1343674099 1905 dbSNP
rs1198271900 1908 dbSNP
rs1263386045 1916 dbSNP
rs1447169787 1918 dbSNP
rs1192526231 1919 dbSNP
rs1438050855 1928 dbSNP
rs1260684878 1944 dbSNP
rs963883267 1948 dbSNP
rs376799895 1951 dbSNP
rs1193595829 1961 dbSNP
rs1160322624 1962 dbSNP
rs1385798779 1969 dbSNP
rs368552385 1982 dbSNP
rs1400269533 1997 dbSNP
rs1296593713 1998 dbSNP
rs986253221 2005 dbSNP
rs140442038 2007 dbSNP
rs953658572 2012 dbSNP
rs868801418 2017 dbSNP
rs1321997390 2019 dbSNP
rs1292457397 2021 dbSNP
rs1030520671 2024 dbSNP
rs998275548 2027 dbSNP
rs965043850 2041 dbSNP
rs1031844513 2043 dbSNP
rs998655905 2051 dbSNP
rs1199943821 2053 dbSNP
rs904267135 2057 dbSNP
rs1357083381 2059 dbSNP
rs1183907358 2061 dbSNP
rs1311195647 2064 dbSNP
rs1439222897 2074 dbSNP
rs1157072811 2078 dbSNP
rs773945007 2083 dbSNP
rs1367737640 2086 dbSNP
rs536855806 2089 dbSNP
rs1302876839 2096 dbSNP
rs1012739578 2109 dbSNP
rs557436219 2110 dbSNP
rs1308356565 2112 dbSNP
rs1335819320 2113 dbSNP
rs1238843669 2120 dbSNP
rs894416253 2127 dbSNP
rs1057019652 2128 dbSNP
rs938690697 2133 dbSNP
rs567822993 2139 dbSNP
rs753924498 2148 dbSNP
rs1487389069 2152 dbSNP
rs1036767781 2153 dbSNP
rs547780788 2154 dbSNP
rs942160794 2156 dbSNP
rs1160855452 2158 dbSNP
rs1439134785 2160 dbSNP
rs909287303 2162 dbSNP
rs1387189972 2165 dbSNP
rs1164350984 2166 dbSNP
rs986285843 2171 dbSNP
rs1362906681 2179 dbSNP
rs1179002630 2184 dbSNP
rs1400274673 2187 dbSNP
rs746426886 2190 dbSNP
rs151257809 2195 dbSNP
rs1221569723 2204 dbSNP
rs565430543 2205 dbSNP
rs1246179329 2209 dbSNP
rs551788847 2224 dbSNP
rs1319694186 2225 dbSNP
rs531819400 2227 dbSNP
rs1366798607 2234 dbSNP
rs1229388294 2245 dbSNP
rs562663918 2250 dbSNP
rs1251798102 2257 dbSNP
rs537113843 2257 dbSNP
rs1196710345 2261 dbSNP
rs1244975230 2275 dbSNP
rs1260430043 2276 dbSNP
rs143674970 2287 dbSNP
rs1181486345 2294 dbSNP
rs1254416894 2299 dbSNP
rs559867882 2302 dbSNP
rs1171504103 2317 dbSNP
rs1236956781 2323 dbSNP
rs998915101 2326 dbSNP
rs1347411358 2331 dbSNP
rs968481882 2335 dbSNP
rs1021363673 2336 dbSNP
rs564399162 2355 dbSNP
rs956706329 2357 dbSNP
rs1165996397 2363 dbSNP
rs1376584606 2380 dbSNP
rs1383586573 2384 dbSNP
rs772341239 2385 dbSNP
rs1295983623 2391 dbSNP
rs183086261 2393 dbSNP
rs1216660885 2413 dbSNP
rs1320662491 2416 dbSNP
rs1264992725 2423 dbSNP
rs766622726 2426 dbSNP
rs35595949 2430 dbSNP
rs1002832162 2432 dbSNP
rs1235827430 2434 dbSNP
rs1486948062 2440 dbSNP
rs577986375 2455 dbSNP
rs1156503619 2473 dbSNP
rs1467270656 2476 dbSNP
rs552664704 2477 dbSNP
rs1262846689 2478 dbSNP
rs1477077738 2489 dbSNP
rs1202216088 2496 dbSNP
rs897727395 2497 dbSNP
rs1414517906 2498 dbSNP
rs1198094749 2500 dbSNP
rs1036392293 2507 dbSNP
rs942017804 2513 dbSNP
rs1479403634 2514 dbSNP
rs1339581967 2515 dbSNP
rs1397988738 2519 dbSNP
rs140057130 2521 dbSNP
rs1193631808 2525 dbSNP
rs1368151952 2529 dbSNP
rs1446274330 2532 dbSNP
rs1276509826 2536 dbSNP
rs1050439878 2537 dbSNP
rs115831105 2539 dbSNP
rs1203549815 2544 dbSNP
rs753867430 2549 dbSNP
rs190941393 2551 dbSNP
rs976650411 2559 dbSNP
rs1270083142 2574 dbSNP
rs1189991489 2578 dbSNP
rs1263777573 2578 dbSNP
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rs1304612508 6326 dbSNP
rs1411508570 6327 dbSNP
rs1351064410 6328 dbSNP
rs1334961285 6334 dbSNP
rs773277163 6336 dbSNP
rs781053001 6338 dbSNP
rs867096969 6341 dbSNP
rs768496494 6344 dbSNP
rs1165218329 6349 dbSNP
rs746800909 6351 dbSNP
rs780292799 6355 dbSNP
rs758593440 6357 dbSNP
rs745978432 6360 dbSNP
rs1253201028 6364 dbSNP
rs778814541 6365 dbSNP
rs1449369470 6366 dbSNP
rs533513395 6367 dbSNP
rs1210000214 6370 dbSNP
rs1349506022 6383 dbSNP
rs1232118008 6384 dbSNP
rs754364644 6389 dbSNP
rs764661262 6396 dbSNP
rs772042471 6404 dbSNP
rs1190036422 6420 dbSNP
rs374073750 6422 dbSNP
rs1051266116 6437 dbSNP
rs1161550009 6446 dbSNP
rs946310677 6448 dbSNP
rs913467702 6465 dbSNP
rs1248328910 6472 dbSNP
rs1207538420 6480 dbSNP
rs1417129104 6484 dbSNP
rs1314091688 6489 dbSNP
rs1355525660 6491 dbSNP
rs774609443 6493 dbSNP
rs1052121672 6496 dbSNP
rs1281926139 6501 dbSNP
rs936295792 6512 dbSNP
rs1214850925 6522 dbSNP
rs1273618438 6532 dbSNP
rs1339888777 6542 dbSNP
rs1212923337 6543 dbSNP
rs1280888138 6557 dbSNP
rs143811354 6559 dbSNP
rs1463116362 6561 dbSNP
rs925066430 6562 dbSNP
rs775007440 6563 dbSNP
rs1243940629 6564 dbSNP
rs764747964 6565 dbSNP
rs777654671 6566 dbSNP
rs980892040 6573 dbSNP
rs1388700208 6574 dbSNP
rs866176265 6582 dbSNP
rs1437032813 6599 dbSNP
rs969160508 6600 dbSNP
rs1375301207 6605 dbSNP
rs917775210 6610 dbSNP
rs1204167916 6611 dbSNP
rs1311584268 6621 dbSNP
rs1431013928 6624 dbSNP
rs188707805 6636 dbSNP
rs1296493079 6637 dbSNP
rs1362603707 6638 dbSNP
rs991991403 6646 dbSNP
rs951321327 6647 dbSNP
rs1344155942 6650 dbSNP
rs1198710899 6653 dbSNP
rs1216180972 6659 dbSNP
rs1364338425 6662 dbSNP
rs1208329747 6663 dbSNP
rs1246354241 6664 dbSNP
rs1455747218 6665 dbSNP
rs1298538661 6671 dbSNP
rs1194609517 6673 dbSNP
rs1025492351 6676 dbSNP
rs1434658315 6680 dbSNP
rs1386498421 6682 dbSNP
rs995479200 6684 dbSNP
rs1386480390 6691 dbSNP
rs1400728286 6696 dbSNP
rs1319309957 6702 dbSNP
rs565831258 6708 dbSNP
rs1385943398 6709 dbSNP
rs558582446 6713 dbSNP
rs55832189 6714 dbSNP
rs1359133010 6722 dbSNP
rs57675875 6731 dbSNP
rs1330341498 6732 dbSNP
rs866117420 6735 dbSNP
rs1174388235 6741 dbSNP
rs184207851 6742 dbSNP
rs1391180667 6746 dbSNP
rs1351324466 6751 dbSNP
rs1227787686 6765 dbSNP
rs759087948 6768 dbSNP
rs1266348358 6771 dbSNP
rs962650837 6791 dbSNP
rs763313481 6793 dbSNP
rs1267105215 6794 dbSNP
rs1018361773 6800 dbSNP
rs752926692 6801 dbSNP
rs1187007613 6815 dbSNP
rs775677642 6820 dbSNP
rs1472570177 6821 dbSNP
rs1447316797 6826 dbSNP
rs1409191508 6827 dbSNP
rs1462665353 6848 dbSNP
rs1244422164 6851 dbSNP
rs891198796 6859 dbSNP
rs1051726354 6860 dbSNP
rs1330642314 6863 dbSNP
rs1336235447 6868 dbSNP
rs1254241371 6870 dbSNP
rs1206557616 6871 dbSNP
rs1337090219 6888 dbSNP
rs1234120476 6891 dbSNP
rs1010385955 6909 dbSNP
rs1354516245 6919 dbSNP
rs569607204 6923 dbSNP
rs1273692317 6927 dbSNP
rs3832648 6928 dbSNP
rs56288532 6928 dbSNP
rs751096600 6928 dbSNP
rs1363346389 6929 dbSNP
rs1483002844 6929 dbSNP
rs1054681285 6932 dbSNP
rs1317207586 6934 dbSNP
rs1418213 6942 dbSNP
rs1475935211 6943 dbSNP
rs528448809 6946 dbSNP
rs1164877723 6955 dbSNP
rs535825576 6959 dbSNP
rs1301542767 6967 dbSNP
rs1169378390 6968 dbSNP
rs572132338 6973 dbSNP
rs1428989140 6975 dbSNP
rs947822424 6975 dbSNP
rs776578037 6976 dbSNP
rs149015127 6988 dbSNP
rs547434971 6991 dbSNP
rs1312142919 6993 dbSNP
rs1338875246 6996 dbSNP
rs770781326 7009 dbSNP
rs1229952035 7014 dbSNP
rs1252221741 7016 dbSNP
rs1168404542 7020 dbSNP
rs528688372 7022 dbSNP
rs559852922 7030 dbSNP
rs552492457 7039 dbSNP
rs532895512 7040 dbSNP
rs1254894614 7043 dbSNP
rs77455225 7045 dbSNP
rs1194925453 7054 dbSNP
rs543865542 7064 dbSNP
rs918510563 7075 dbSNP
rs746782062 7080 dbSNP
rs11549489 7087 dbSNP
rs1178842244 7089 dbSNP
rs1166490773 7092 dbSNP
rs144941890 7094 dbSNP
rs1250767945 7095 dbSNP
rs1400211529 7096 dbSNP
rs561238973 7099 dbSNP
rs1384131899 7101 dbSNP
rs1296631375 7102 dbSNP
rs1364747171 7104 dbSNP
rs962651402 7106 dbSNP
rs1306125574 7117 dbSNP
rs375822021 7119 dbSNP
rs1018721678 7123 dbSNP
rs3740046 7124 dbSNP
rs1245814148 7135 dbSNP
rs558759449 7136 dbSNP
rs538433040 7148 dbSNP
rs1448538055 7149 dbSNP
rs758025674 7150 dbSNP
rs1393596842 7163 dbSNP
rs575961903 7168 dbSNP
rs542944405 7170 dbSNP
rs1010420086 7175 dbSNP
rs1408447828 7178 dbSNP
rs1367866258 7180 dbSNP
rs1455358092 7180 dbSNP
rs1163414692 7185 dbSNP
rs1321303676 7190 dbSNP
rs1457125347 7191 dbSNP
rs1366156173 7197 dbSNP
rs1160717146 7202 dbSNP
rs1433195554 7207 dbSNP
rs1472857690 7209 dbSNP
rs546360305 7210 dbSNP
rs1368792793 7212 dbSNP
rs535861476 7233 dbSNP
rs1299887075 7235 dbSNP
rs1319258622 7236 dbSNP
rs1490762136 7237 dbSNP
rs1268241956 7243 dbSNP
rs1206479699 7251 dbSNP
rs1267795151 7256 dbSNP
rs1254649387 7265 dbSNP
rs573845581 7269 dbSNP
rs567213144 7278 dbSNP
rs1265095212 7280 dbSNP
rs772889823 7284 dbSNP
rs1420838517 7285 dbSNP
rs1159939355 7288 dbSNP
rs371996826 7289 dbSNP
rs1230383755 7294 dbSNP
rs1167454229 7299 dbSNP
rs1330413642 7303 dbSNP
rs1033177185 7309 dbSNP
rs1436126263 7311 dbSNP
rs1292181752 7312 dbSNP
rs115474018 7313 dbSNP
rs906100049 7319 dbSNP
rs1288396205 7331 dbSNP
rs754574448 7334 dbSNP
rs1226176141 7335 dbSNP
rs1324647120 7336 dbSNP
rs1291511482 7353 dbSNP
rs1321952917 7357 dbSNP
rs1217243102 7358 dbSNP
rs1244786645 7360 dbSNP
rs1481562238 7363 dbSNP
rs1182856212 7375 dbSNP
rs1385858819 7376 dbSNP
rs947720852 7379 dbSNP
rs753292592 7380 dbSNP
rs1471683740 7381 dbSNP
rs896237498 7395 dbSNP
rs1414755468 7412 dbSNP
rs1290107915 7413 dbSNP
rs1163101146 7416 dbSNP
rs1457362061 7423 dbSNP
rs1410597318 7434 dbSNP
rs1356688903 7437 dbSNP
rs1307259585 7443 dbSNP
rs1156775496 7455 dbSNP
rs1308027135 7481 dbSNP
rs1349190747 7484 dbSNP
rs571245075 7491 dbSNP
rs929813496 7500 dbSNP
rs1377937023 7501 dbSNP
rs552838087 7503 dbSNP
rs1379382324 7507 dbSNP
rs768027463 7516 dbSNP
rs1227433211 7526 dbSNP
rs1344127498 7537 dbSNP
rs918458165 7537 dbSNP
rs532731093 7550 dbSNP
rs973865033 7556 dbSNP
rs1482052225 7565 dbSNP
rs563990571 7585 dbSNP
rs1265606196 7591 dbSNP
rs941299017 7593 dbSNP
rs1210839417 7596 dbSNP
rs911117170 7600 dbSNP
rs1465347631 7605 dbSNP
rs550460183 7608 dbSNP
rs1180407242 7621 dbSNP
rs955370378 7626 dbSNP
rs1207328057 7631 dbSNP
rs1347805064 7637 dbSNP
rs1450417919 7638 dbSNP
rs1168359731 7639 dbSNP
rs1029757670 7642 dbSNP
rs988935807 7645 dbSNP
rs1335592015 7650 dbSNP
rs1359277008 7654 dbSNP
rs956098589 7661 dbSNP
rs1328987903 7663 dbSNP
rs1033206363 7667 dbSNP
rs530124580 7668 dbSNP
rs1000344260 7672 dbSNP
rs74148839 7676 dbSNP
rs1435372029 7701 dbSNP
rs1387228383 7702 dbSNP
rs1023188207 7711 dbSNP
rs757726056 7712 dbSNP
rs1441974587 7718 dbSNP
rs1282720328 7724 dbSNP
rs1470903446 7740 dbSNP
rs1208129634 7749 dbSNP
rs1250064722 7750 dbSNP
rs1465537681 7752 dbSNP
rs896112946 7753 dbSNP
rs1056053995 7755 dbSNP
rs1402908203 7758 dbSNP
rs929757968 7763 dbSNP
rs896892881 7764 dbSNP
rs1464304420 7780 dbSNP
rs1038185946 7781 dbSNP
rs1190708289 7790 dbSNP
rs941175008 7792 dbSNP
rs911139619 7813 dbSNP
rs55678255 7818 dbSNP
rs1247464139 7823 dbSNP
rs1362854573 7824 dbSNP
rs780244529 7836 dbSNP
rs1275313141 7847 dbSNP
rs190768011 7856 dbSNP
rs1270116184 7857 dbSNP
rs1045949 7868 dbSNP
rs988796647 7871 dbSNP
rs956131055 7875 dbSNP
rs571426221 7877 dbSNP
rs1280025998 7885 dbSNP
rs979349812 7892 dbSNP
rs1343234963 7898 dbSNP
rs1477343124 7907 dbSNP
rs1170276860 7918 dbSNP
rs1277253831 7923 dbSNP
rs185323671 7954 dbSNP
rs1457441849 7959 dbSNP
rs1364072312 7960 dbSNP
rs1386013877 7966 dbSNP
rs1009526467 7994 dbSNP
rs1324003681 7995 dbSNP
rs1330398230 7999 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3363.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714647. RNA binding protein: AGO2. Condition:mildMNase ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 3363.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714647
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repB
Location of target site ENST00000371719.2 | 3UTR | UGUCCAAAUCCAUGCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000371719.2 | 3UTR | UGUCCAAAUCCAUGCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4301 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081134 LDLR low density lipoprotein receptor 2 4
MIRT090911 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT229436 MECP2 methyl-CpG binding protein 2 2 2
MIRT274717 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT350957 BACH1 BTB domain and CNC homolog 1 2 2
MIRT386722 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT446022 PEX3 peroxisomal biogenesis factor 3 2 2
MIRT481303 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 14
MIRT483959 ZNF354B zinc finger protein 354B 2 6
MIRT495667 TUBAL3 tubulin alpha like 3 2 2
MIRT496554 TBX15 T-box 15 2 2
MIRT497702 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT498105 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT512535 SEMA4D semaphorin 4D 2 2
MIRT512556 MFN2 mitofusin 2 2 6
MIRT521465 RABGAP1 RAB GTPase activating protein 1 2 6
MIRT526236 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526743 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527578 BRD7 bromodomain containing 7 2 4
MIRT528038 WT1 Wilms tumor 1 2 2
MIRT528267 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528505 HTR7 5-hydroxytryptamine receptor 7 2 4
MIRT528758 RPS27 ribosomal protein S27 2 6
MIRT528999 IPO9 importin 9 2 2
MIRT529701 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529781 C17orf82 chromosome 17 open reading frame 82 2 2
MIRT533797 TMEM119 transmembrane protein 119 2 6
MIRT535308 PHF12 PHD finger protein 12 2 2
MIRT535917 MKL2 MKL1/myocardin like 2 2 2
MIRT544892 OSBPL1A oxysterol binding protein like 1A 2 2
MIRT555423 PPIC peptidylprolyl isomerase C 2 2
MIRT562068 KLHL15 kelch like family member 15 2 2
MIRT565623 SLC31A1 solute carrier family 31 member 1 2 2
MIRT565661 SIX1 SIX homeobox 1 2 2
MIRT570138 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT571045 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT621232 LMAN1 lectin, mannose binding 1 2 2
MIRT622272 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT623844 GAN gigaxonin 2 2
MIRT626158 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626464 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT632087 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT637243 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT642710 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643611 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT644270 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT645470 SPIN3 spindlin family member 3 2 2
MIRT649193 DNPEP aspartyl aminopeptidase 2 2
MIRT650776 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT651345 ZC2HC1C zinc finger C2HC-type containing 1C 2 2
MIRT652237 TRAPPC3L trafficking protein particle complex 3 like 2 2
MIRT652587 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654591 PURA purine rich element binding protein A 2 2
MIRT654649 PTAFR platelet activating factor receptor 2 2
MIRT656842 KLF7 Kruppel like factor 7 2 2
MIRT657209 IKZF2 IKAROS family zinc finger 2 2 2
MIRT658513 ETV3 ETS variant 3 2 2
MIRT659448 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT668816 CYLD CYLD lysine 63 deubiquitinase 2 2
MIRT669067 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT677711 ELOF1 elongation factor 1 homolog 2 4
MIRT687146 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT698498 THOC2 THO complex 2 2 2
MIRT707930 PPP1R3D protein phosphatase 1 regulatory subunit 3D 4 2
MIRT708737 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT710031 POLL DNA polymerase lambda 2 2
MIRT712175 STK4 serine/threonine kinase 4 2 2
MIRT715297 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT716892 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT717378 RBM41 RNA binding motif protein 41 2 2
MIRT718082 CLIC5 chloride intracellular channel 5 2 2
MIRT718721 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT719152 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719224 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719528 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT719861 KLF2 Kruppel like factor 2 2 2
MIRT720326 CAMK2G calcium/calmodulin dependent protein kinase II gamma 2 2
MIRT721596 SREBF1 sterol regulatory element binding transcription factor 1 2 2
MIRT722020 NEBL nebulette 2 2
MIRT722484 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722614 TEAD1 TEA domain transcription factor 1 2 2
MIRT723664 RPTN repetin 2 2
MIRT723939 SVOP SV2 related protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive High Hepatocellular Carcinoma cell line (Hep3B, 97L)
hsa-miR-4301 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-4301 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-4301 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-4301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-miR-4301 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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