miRTarBase - #MIRT528638


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pre-miRNA Information
pre-miRNA hsa-mir-4796   
Genomic Coordinates chr3: 114743445 - 114743525
Description Homo sapiens miR-4796 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4796-5p
Sequence 9| UGUCUAUACUCUGUCACUUUAC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1466952984 15 dbSNP
rs887451291 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SENP6   
Synonyms SSP1, SUSP1
Description SUMO1/sentrin specific peptidase 6
Transcript NM_001100409   
Other Transcripts NM_015571   
Expression
Putative miRNA Targets on SENP6
3'UTR of SENP6
(miRNA target sites are highlighted)		 
>SENP6|NM_001100409|3'UTR
   1 CCATTTCTGTTACTTGTCATTTCTACTTTCAGAAACTAAATGACTTTCAAATTTGGGTATAGACAATAAAGAACTGAAGT
  81 GCTCACTACTCAGTGATTTGGAAATTTTGATGCTTGTATAAATGTCAGATAATTAATTTCCAAAGGCGTATGTATTAAGT
 161 AAAAGTCTGTAAATATGTTAATGAGGCCAATTTTTCCAGCATTTATAATTATTTTTTTCACTTGTTAGGAAGCTTTTGTT
 241 ATGTATTTTCTGTTAATAGTACCTAAAATTGCAACTTCTAAACACAAATAAAAAGAAAATATTTATAGGAGGAAATGATT
 321 AATTTGATATTCTTTAGTGAACTTGTTTAATTCCTCAGTGGGTGTGACATATTTCATGGGAATATTCAAATATCTATGGT
 401 AATATTTTGACCCTTTATATTTGTTCTAAAATAAGTCAAAATGTGAAAATAATATTAAATCTAAGATATTTTGAACTAAG
 481 CATCTTTATATGCTTGTGTAACAGGAACAAAGTAACAGCCTTTCAATTCATATACTGCCTTGTGTTCAGTGAACCCAAGA
 561 AATGTAATAAATATTTGTAATTTTACACAAATATTTAAGAGGAAAGAGTATTAAGAGCAATTCAAAAAAAGTAACCTTAT
 641 ACTACTAAAAAAAAAATTCTTGCATATATTATCATCAAATGCATTTTTGAAGACATCAAAGACTCAGGTTAAAACTATTT
 721 TGGTAAGTGCAGCTTGAATTTCAAATATCCCGTGTTACCTTTCTCTATTACAGCTTAAAGTATGCTACAATCTGTGTCAT
 801 ATAGTTAATTGATAAGCATTTTTAATCTGTGTAAACACAGGAATTTAAATAGGAATTTACTATTTTTTTATAAAGCTTTT
 881 GCTATTTTTTCATTGCTCATTTTGTTCTTATTATTTTGATAAAGTATCAGACTTTTTGCTTGAGTTCTTCAGTGTAAATT
 961 ATTTTTTACATGTAAAAGTACTGTATTCAACCAGTTGCATAATACAGCAAAAATCTTTGAATTCCCCTTTAAAATAACTA
1041 AAATTTGATGGTTTCCATGACAGATTTATAGCACATATAGGGATCTTGCATGTATCTGCAGAAACTTCATTATTTTTCAA
1121 ATGAAATGGTGTATACTTCTTTCAAATGAACTTTGAGACTTGAAACATATTTTAGTCATTTTTTGTTAAATATTGAATTT
1201 TTAAATACACATATATCAAAAATAGTTGAGAATAAAAAGAAAGCCTAATCATCAGCAATTATTTTATTTTTAATTTGGCC
1281 ATCTCTGACATTGCAGTCAATATCTTAGGGTATTTTCTTGAATTTAATAAAGTCCCATGGGTGGGTTCAGGGTGAATGGG
1361 AGTATTAACAACAACCAAAAAATATCTATTGAGACACAGTAGAGTCTCAGTAAGAGAAATATTAAAATGTAAGAAAGGTC
1441 ACCATTAGTGATATCAACTGTAGTTTGTTACTTTGAACTATATTTCTGATTAACTCTTTATAGTAATAACTTAGAGCTGT
1521 TAGCTCAGATATCTTAATTAGCTCATATGAAAAACAAGTTTAATTTTATTATTTACTGAACATGGCAAAATGCTTTTCAA
1601 TCTATAATAAAACTGGGATAAAAAATTGAAGTTGTTTTTTTTAAAACCTAATAGCAATAAGCAAAATTGGCATACATAAT
1681 TTTTTTAATGAACTATATTTTGTCAGAATCTGAAGGTACTGAAAAACTATTCTAAAATGCCTACTTGTTTTTGCATTAAT
1761 TTGTAATGCTTACATTTTGCACCCTTAGATAATGTTTGATAAGATAAAAATATAATTTATCCCTTGTACCAACTCAAGTC
1841 AATCAGATTTTAACATGAAAAATATAGATTAATGTATGTCAGCTTTCTAGAGGTAGAATACTCAGCTATTTGATGGCATT
1921 TTTCCCACCCCATGTGAAATTTTATTTTTGGAAGTTATGCTAGTGACATTGCAATATATATTGAAATCTTCGGAGGCTGC
2001 CAGGTTGAGCTTCAAAACTAGACTTGAGAATCTTTCGTGTATATGCACATTCACTTGATAATTGTGTATTCTATGTAGTT
2081 TAAAGTGGGATCAAGCCTTTTAAAATGTGTTATTAGTACTTAGAAGTTGTAAAACAGAACTTATAGAGGTTTGTTACTAG
2161 ACACTGAAACTGCATGACAAGTATCTGGTGTCTTAACTAATTAGATAGATCTGTTGTATTGGTTTTCTTGTTGGATAGAA
2241 TAACAGTTAATCATTTTTAGAAGAGTTTTAGATTACTTGCCATAAAATTTGTATGTCTCAGCTCTTGTTGGTTTAGGAGC
2321 AGAAGTGGTGTTTAGTCCCTTCCCGTTAATGTTGCTGTGCTACTTCAGACAGCTGAAAACTTAATGGTATTATTTCAAGT
2401 TCACATAACCCTAAAAAAGGTTTTCTTTGTGTAGTAACTTGTGCTTAAACTTTTAGTCAATTAAATGTAGGAGGTTTTAT
2481 TTGAAAACATAAAATGATTCTCTAAATTACATCTTGTTTTAAGCCACCAAAATGAATGCAGTAATTTTTCTTTAAAAAAA
2561 TGATCTCTGAAAACTGTGAGACAATGTAAAAAGAATAAGTTTTAATTCCCCCAAAATCAAAAATTGTACTTAAAATCTCA
2641 GACAATTCACTGAACAGGAATAATAAAGAACATATTTTAATATATAATATG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' caUUUCACUGUCUCAUAUCUGu 5'
            ||| |    |:|||||||| 
Target 5' tcAAATT---TGGGTATAGACa 3'
 47 - 65 153.00 -13.50
2 
miRNA  3' caUUUCACUGUCUCAUAUCUGu 5'
            ||  ||| | | ||||||: 
Target 5' ttAACATGA-AAAATATAGATt 3'
 1850 - 1870 139.00 -5.30
3 
miRNA  3' caUUUCAC----UGUCU--CAUAUCUgu 5'
            ||: ||    |||||   ||||||  
Target 5' agAAGTTGTAAAACAGAACTTATAGAgg 3'
 2122 - 2149 136.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30518745 37 COSMIC
COSN17183423 397 COSMIC
COSN18975307 660 COSMIC
COSN2177549 660 COSMIC
COSN8352325 1155 COSMIC
COSN15660974 1550 COSMIC
COSN29444939 1665 COSMIC
COSN7897836 2145 COSMIC
COSN21746243 2313 COSMIC
COSN20103021 2515 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373476931 2 dbSNP
rs867207307 4 dbSNP
rs1274584541 12 dbSNP
rs945030707 14 dbSNP
rs1416279990 17 dbSNP
rs1051344080 20 dbSNP
rs1397128057 21 dbSNP
rs890140175 24 dbSNP
rs1294219493 35 dbSNP
rs1026248470 39 dbSNP
rs12302 40 dbSNP
rs1355240484 41 dbSNP
rs766493892 42 dbSNP
rs568544010 45 dbSNP
rs751622590 46 dbSNP
rs755100397 51 dbSNP
rs1261866098 57 dbSNP
rs548496220 60 dbSNP
rs276681 64 dbSNP
rs1254819340 65 dbSNP
rs1214049176 66 dbSNP
rs1355407428 67 dbSNP
rs374899955 69 dbSNP
rs1263885076 77 dbSNP
rs189468622 81 dbSNP
rs1308150701 92 dbSNP
rs1400429008 93 dbSNP
rs899994757 105 dbSNP
rs552048798 113 dbSNP
rs367883729 119 dbSNP
rs910428216 121 dbSNP
rs996101589 130 dbSNP
rs1279835010 142 dbSNP
rs1386511853 147 dbSNP
rs28522186 149 dbSNP
rs1390238101 160 dbSNP
rs989238305 167 dbSNP
rs914967776 172 dbSNP
rs1231382626 191 dbSNP
rs1255566249 209 dbSNP
rs571745890 212 dbSNP
rs1447170480 213 dbSNP
rs1202237566 217 dbSNP
rs945082546 228 dbSNP
rs538723353 232 dbSNP
rs1396759148 243 dbSNP
rs1261702353 244 dbSNP
rs1488235620 251 dbSNP
rs1199555263 254 dbSNP
rs951578868 262 dbSNP
rs1265091047 271 dbSNP
rs1197767052 275 dbSNP
rs1481050603 275 dbSNP
rs1274193560 276 dbSNP
rs757515346 279 dbSNP
rs7385 285 dbSNP
rs1350169227 286 dbSNP
rs938964612 288 dbSNP
rs1233208567 290 dbSNP
rs1024939377 293 dbSNP
rs568900914 303 dbSNP
rs1057311004 308 dbSNP
rs1479622940 318 dbSNP
rs1392346116 320 dbSNP
rs970723262 321 dbSNP
rs867119312 328 dbSNP
rs1174931413 351 dbSNP
rs1173089411 357 dbSNP
rs980873615 371 dbSNP
rs180702801 377 dbSNP
rs1013003464 381 dbSNP
rs1251290256 385 dbSNP
rs1203335859 390 dbSNP
rs989751662 392 dbSNP
rs913751029 394 dbSNP
rs554846193 397 dbSNP
rs1343415385 400 dbSNP
rs1263051807 401 dbSNP
rs1156275555 414 dbSNP
rs1350308341 416 dbSNP
rs1287289463 418 dbSNP
rs1359880372 429 dbSNP
rs1356806589 432 dbSNP
rs1334184352 436 dbSNP
rs1413417359 444 dbSNP
rs1420256401 451 dbSNP
rs1399924744 453 dbSNP
rs78058057 455 dbSNP
rs911524639 460 dbSNP
rs3798459 463 dbSNP
rs1180280390 464 dbSNP
rs1385959366 473 dbSNP
rs1300922663 477 dbSNP
rs1186843895 481 dbSNP
rs137877131 488 dbSNP
rs1264451226 489 dbSNP
rs1235571625 490 dbSNP
rs557109048 491 dbSNP
rs570562796 492 dbSNP
rs1283997329 500 dbSNP
rs898938448 505 dbSNP
rs1026767921 506 dbSNP
rs375461519 511 dbSNP
rs1353022192 513 dbSNP
rs186145775 519 dbSNP
rs544323181 527 dbSNP
rs1487742089 530 dbSNP
rs1284452652 534 dbSNP
rs1190972009 541 dbSNP
rs1338237656 545 dbSNP
rs887274162 548 dbSNP
rs1435808248 574 dbSNP
rs1387620553 583 dbSNP
rs1156612150 584 dbSNP
rs1462821810 587 dbSNP
rs1414743019 591 dbSNP
rs1162941927 601 dbSNP
rs751780296 602 dbSNP
rs1004432156 605 dbSNP
rs1421673747 607 dbSNP
rs964554281 610 dbSNP
rs1025267547 615 dbSNP
rs1374928153 625 dbSNP
rs989292022 626 dbSNP
rs1434523055 640 dbSNP
rs1176345652 642 dbSNP
rs1464799481 643 dbSNP
rs1246735224 645 dbSNP
rs1215903181 647 dbSNP
rs970716562 647 dbSNP
rs1379188867 648 dbSNP
rs1439707475 656 dbSNP
rs1353635468 660 dbSNP
rs757584458 666 dbSNP
rs1160403537 668 dbSNP
rs1002642552 671 dbSNP
rs1363626466 674 dbSNP
rs1318494631 675 dbSNP
rs1442801905 679 dbSNP
rs763551198 680 dbSNP
rs200245008 688 dbSNP
rs966888089 695 dbSNP
rs142694057 702 dbSNP
rs1392552305 703 dbSNP
rs1388770992 704 dbSNP
rs927657739 718 dbSNP
rs756271354 721 dbSNP
rs966524483 752 dbSNP
rs1057322898 753 dbSNP
rs987346309 759 dbSNP
rs916133583 766 dbSNP
rs150583979 768 dbSNP
rs1449457879 771 dbSNP
rs1221362085 772 dbSNP
rs1326119932 773 dbSNP
rs1037856864 786 dbSNP
rs1266429396 789 dbSNP
rs943037376 790 dbSNP
rs1205201428 793 dbSNP
rs1039080906 795 dbSNP
rs899323717 803 dbSNP
rs1295274337 813 dbSNP
rs1220945260 814 dbSNP
rs994028002 816 dbSNP
rs1047769216 837 dbSNP
rs920291160 846 dbSNP
rs930347492 856 dbSNP
rs1237131703 859 dbSNP
rs1439838950 861 dbSNP
rs1179970070 862 dbSNP
rs1308893595 863 dbSNP
rs1429158446 863 dbSNP
rs1411590508 865 dbSNP
rs139582354 872 dbSNP
rs1423194613 876 dbSNP
rs1047518341 898 dbSNP
rs779848584 900 dbSNP
rs1471378317 901 dbSNP
rs1253464930 902 dbSNP
rs887264102 908 dbSNP
rs1008874727 911 dbSNP
rs1460223781 937 dbSNP
rs1271931923 954 dbSNP
rs1329627764 958 dbSNP
rs1211640610 967 dbSNP
rs560409932 971 dbSNP
rs1017553562 975 dbSNP
rs1352146239 980 dbSNP
rs113265218 983 dbSNP
rs964648815 984 dbSNP
rs191065514 986 dbSNP
rs368555146 999 dbSNP
rs1348688507 1004 dbSNP
rs1428828281 1009 dbSNP
rs1304600280 1016 dbSNP
rs1022168531 1035 dbSNP
rs1002474940 1036 dbSNP
rs1034073617 1040 dbSNP
rs1377005466 1041 dbSNP
rs1402773514 1046 dbSNP
rs1413247515 1048 dbSNP
rs1277000931 1052 dbSNP
rs966565569 1053 dbSNP
rs958067646 1058 dbSNP
rs968188247 1060 dbSNP
rs1249174180 1064 dbSNP
rs1183058930 1067 dbSNP
rs1228285605 1067 dbSNP
rs1011375359 1070 dbSNP
rs1323896595 1074 dbSNP
rs547366534 1076 dbSNP
rs552375016 1078 dbSNP
rs966497095 1083 dbSNP
rs1327252509 1086 dbSNP
rs276683 1093 dbSNP
rs148733599 1115 dbSNP
rs1396629664 1121 dbSNP
rs911738799 1124 dbSNP
rs1457912602 1130 dbSNP
rs960664271 1131 dbSNP
rs1456007355 1134 dbSNP
rs1361661773 1135 dbSNP
rs990422950 1140 dbSNP
rs532509763 1141 dbSNP
rs1412524531 1152 dbSNP
rs550669362 1154 dbSNP
rs568963551 1155 dbSNP
rs1235272400 1156 dbSNP
rs1482604151 1160 dbSNP
rs964960305 1163 dbSNP
rs1182386205 1167 dbSNP
rs949007290 1168 dbSNP
rs1476756991 1178 dbSNP
rs1267432522 1206 dbSNP
rs1037915500 1211 dbSNP
rs536268843 1213 dbSNP
rs1423241111 1214 dbSNP
rs762128610 1218 dbSNP
rs1310595347 1220 dbSNP
rs1466358060 1223 dbSNP
rs1230708880 1225 dbSNP
rs1366511467 1229 dbSNP
rs771031058 1236 dbSNP
rs1433322871 1237 dbSNP
rs930357774 1244 dbSNP
rs929457572 1251 dbSNP
rs1357506057 1255 dbSNP
rs552871787 1256 dbSNP
rs1161054667 1265 dbSNP
rs548254610 1277 dbSNP
rs940160252 1286 dbSNP
rs1046574377 1288 dbSNP
rs1447400616 1293 dbSNP
rs1269273040 1301 dbSNP
rs1210226984 1311 dbSNP
rs1488242013 1313 dbSNP
rs890523794 1319 dbSNP
rs1008969711 1323 dbSNP
rs1263933976 1330 dbSNP
rs1398586058 1334 dbSNP
rs1277941304 1345 dbSNP
rs1297476126 1363 dbSNP
rs906720475 1368 dbSNP
rs1039085008 1373 dbSNP
rs938222869 1376 dbSNP
rs1220090265 1386 dbSNP
rs900494350 1388 dbSNP
rs375842271 1389 dbSNP
rs1010930206 1396 dbSNP
rs1311160688 1400 dbSNP
rs1431082102 1408 dbSNP
rs1370678762 1409 dbSNP
rs1020980350 1411 dbSNP
rs1210199986 1414 dbSNP
rs1460350789 1423 dbSNP
rs1257728301 1424 dbSNP
rs902577881 1426 dbSNP
rs1022172353 1430 dbSNP
rs1234218197 1437 dbSNP
rs1432409637 1438 dbSNP
rs1267015143 1443 dbSNP
rs1184665694 1451 dbSNP
rs1192791197 1452 dbSNP
rs367784277 1455 dbSNP
rs1263672867 1460 dbSNP
rs1008954121 1464 dbSNP
rs1203123654 1464 dbSNP
rs1018692015 1465 dbSNP
rs964581196 1466 dbSNP
rs13204156 1469 dbSNP
rs902350318 1471 dbSNP
rs1478642528 1472 dbSNP
rs1188520269 1474 dbSNP
rs975056752 1481 dbSNP
rs1027609773 1494 dbSNP
rs1350743712 1495 dbSNP
rs6939000 1495 dbSNP
rs983145729 1507 dbSNP
rs1035200545 1509 dbSNP
rs557089379 1509 dbSNP
rs960511827 1527 dbSNP
rs534205943 1528 dbSNP
rs1173142772 1529 dbSNP
rs1161625578 1530 dbSNP
rs907556199 1530 dbSNP
rs181213914 1544 dbSNP
rs1473005832 1545 dbSNP
rs990516368 1546 dbSNP
rs778792883 1548 dbSNP
rs949761406 1549 dbSNP
rs981192131 1551 dbSNP
rs1343307490 1552 dbSNP
rs1377852121 1564 dbSNP
rs1270350258 1566 dbSNP
rs1329374727 1569 dbSNP
rs1287349986 1576 dbSNP
rs1236227804 1587 dbSNP
rs1341792085 1587 dbSNP
rs1334743688 1601 dbSNP
rs577358836 1612 dbSNP
rs1418439025 1631 dbSNP
rs560840768 1634 dbSNP
rs1411444699 1635 dbSNP
rs1457598585 1635 dbSNP
rs938227983 1635 dbSNP
rs1341531052 1638 dbSNP
rs1023297306 1640 dbSNP
rs962314149 1643 dbSNP
rs1366429814 1644 dbSNP
rs973634487 1649 dbSNP
rs1055784282 1653 dbSNP
rs1250477055 1658 dbSNP
rs1209698129 1662 dbSNP
rs1464768661 1665 dbSNP
rs1283083976 1677 dbSNP
rs1221783628 1680 dbSNP
rs894085134 1680 dbSNP
rs946982616 1680 dbSNP
rs920828138 1694 dbSNP
rs144738596 1696 dbSNP
rs556300014 1697 dbSNP
rs1380434699 1706 dbSNP
rs983664230 1721 dbSNP
rs1350813492 1723 dbSNP
rs1215816248 1724 dbSNP
rs1387682969 1728 dbSNP
rs1316488993 1730 dbSNP
rs1407350573 1738 dbSNP
rs374100771 1741 dbSNP
rs1008901461 1742 dbSNP
rs1219109286 1749 dbSNP
rs944804982 1755 dbSNP
rs276684 1756 dbSNP
rs900329043 1770 dbSNP
rs541878694 1785 dbSNP
rs1240782437 1786 dbSNP
rs1224262892 1789 dbSNP
rs1452904764 1799 dbSNP
rs900504500 1805 dbSNP
rs559870744 1808 dbSNP
rs1356702705 1822 dbSNP
rs1027974057 1824 dbSNP
rs1437840973 1825 dbSNP
rs1044047379 1833 dbSNP
rs951970186 1836 dbSNP
rs1158630144 1845 dbSNP
rs772901461 1847 dbSNP
rs1014560014 1851 dbSNP
rs971060217 1861 dbSNP
rs902403793 1866 dbSNP
rs1422790551 1871 dbSNP
rs186499025 1875 dbSNP
rs1034889031 1884 dbSNP
rs545768064 1915 dbSNP
rs1429613694 1919 dbSNP
rs927105101 1924 dbSNP
rs1418003311 1932 dbSNP
rs1402847795 1933 dbSNP
rs959791699 1935 dbSNP
rs1321963222 1940 dbSNP
rs1478572021 1944 dbSNP
rs896321143 1945 dbSNP
rs990974284 1949 dbSNP
rs564364981 1955 dbSNP
rs1011954650 1968 dbSNP
rs760165220 1969 dbSNP
rs1436793448 1977 dbSNP
rs962368449 1983 dbSNP
rs973742646 1989 dbSNP
rs1305091927 1992 dbSNP
rs191804329 1993 dbSNP
rs1220718081 2014 dbSNP
rs1374033382 2032 dbSNP
rs549536545 2038 dbSNP
rs183054603 2044 dbSNP
rs1282880886 2056 dbSNP
rs923933822 2059 dbSNP
rs1352581076 2066 dbSNP
rs944746057 2074 dbSNP
rs1409317187 2078 dbSNP
rs139929194 2086 dbSNP
rs1040839327 2090 dbSNP
rs770542765 2092 dbSNP
rs569354702 2093 dbSNP
rs1424988069 2098 dbSNP
rs796973523 2101 dbSNP
rs1253529608 2110 dbSNP
rs775795644 2110 dbSNP
rs887615343 2114 dbSNP
rs1480054299 2120 dbSNP
rs1004768828 2128 dbSNP
rs763537260 2132 dbSNP
rs1451896747 2136 dbSNP
rs1442778358 2138 dbSNP
rs1222602319 2139 dbSNP
rs548592718 2140 dbSNP
rs1262218089 2143 dbSNP
rs1014884425 2144 dbSNP
rs566750972 2145 dbSNP
rs921981262 2150 dbSNP
rs1381527136 2152 dbSNP
rs1471453560 2158 dbSNP
rs751941203 2171 dbSNP
rs1002564555 2172 dbSNP
rs1406263091 2179 dbSNP
rs762316948 2182 dbSNP
rs958457901 2184 dbSNP
rs1335062693 2188 dbSNP
rs902498987 2190 dbSNP
rs116827149 2192 dbSNP
rs75432154 2202 dbSNP
rs766439427 2207 dbSNP
rs552607052 2211 dbSNP
rs187548713 2212 dbSNP
rs1183107565 2215 dbSNP
rs535824255 2217 dbSNP
rs924217123 2224 dbSNP
rs1242486144 2231 dbSNP
rs554556418 2234 dbSNP
rs944698290 2237 dbSNP
rs1268975065 2239 dbSNP
rs1012007012 2283 dbSNP
rs750736875 2294 dbSNP
rs1242559947 2304 dbSNP
rs1044811543 2306 dbSNP
rs1283464690 2309 dbSNP
rs1315189697 2322 dbSNP
rs1314871130 2330 dbSNP
rs190936309 2331 dbSNP
rs1228968844 2338 dbSNP
rs921948087 2344 dbSNP
rs1313616294 2345 dbSNP
rs1437684655 2352 dbSNP
rs1389921353 2368 dbSNP
rs1289070701 2371 dbSNP
rs1452528367 2376 dbSNP
rs1343074526 2384 dbSNP
rs1166234707 2393 dbSNP
rs932048464 2397 dbSNP
rs756078649 2406 dbSNP
rs1234898382 2407 dbSNP
rs1451096235 2422 dbSNP
rs995653335 2424 dbSNP
rs1025345704 2430 dbSNP
rs951115063 2434 dbSNP
rs556777189 2448 dbSNP
rs1198192171 2454 dbSNP
rs1484978121 2466 dbSNP
rs182102379 2468 dbSNP
rs1439569507 2470 dbSNP
rs780192509 2472 dbSNP
rs535193913 2474 dbSNP
rs1186067533 2479 dbSNP
rs1290210051 2483 dbSNP
rs1231328960 2484 dbSNP
rs1237400005 2495 dbSNP
rs1473370046 2499 dbSNP
rs966212561 2501 dbSNP
rs1003220270 2505 dbSNP
rs974882783 2512 dbSNP
rs1421088518 2513 dbSNP
rs1294979677 2514 dbSNP
rs3215618 2514 dbSNP
rs66563139 2514 dbSNP
rs200379468 2515 dbSNP
rs201563185 2516 dbSNP
rs922076132 2520 dbSNP
rs1424712862 2528 dbSNP
rs754443071 2537 dbSNP
rs968188594 2538 dbSNP
rs958622879 2542 dbSNP
rs1011314450 2554 dbSNP
rs1021367801 2554 dbSNP
rs1398021914 2561 dbSNP
rs878977995 2562 dbSNP
rs541410620 2564 dbSNP
rs1192062497 2567 dbSNP
rs979917395 2569 dbSNP
rs753672264 2572 dbSNP
rs923967615 2578 dbSNP
rs1333501197 2589 dbSNP
rs935295492 2594 dbSNP
rs1340957102 2596 dbSNP
rs1056397677 2601 dbSNP
rs917810154 2605 dbSNP
rs1251263296 2608 dbSNP
rs1343445724 2608 dbSNP
rs1225668071 2626 dbSNP
rs1314353328 2628 dbSNP
rs1405243836 2640 dbSNP
rs1416440278 2640 dbSNP
rs1344492055 2641 dbSNP
rs1276095812 2643 dbSNP
rs1411159410 2653 dbSNP
rs1031144231 2665 dbSNP
rs540133545 2666 dbSNP
rs947956592 2667 dbSNP
rs966244711 2675 dbSNP
rs976745401 2676 dbSNP
rs754977831 2680 dbSNP
rs1176902532 2682 dbSNP
rs898329098 2682 dbSNP
rs553768347 2683 dbSNP
rs1339555005 2684 dbSNP
rs995309003 2684 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 26054.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' caUUUCACUGUCUCAUAUCugu 5'
            ||| |    |:||||||   
Target 5' ucAAAUU---UGGGUAUAG--- 3'
 		5 - 20
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001100409 | 3UTR | UUGUCAUUUCUACUUUCAGAAACUAAAUGACUUUCAAAUUUGGGUAUAGACAAUAAAGAACUGAAGUGCUCACUACUCAGUGAUUUGGAAAUUUUGAUGCUUGUAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001100409 | 3UTR | CUACUUUCAGAAACUAAAUGACUUUCAAAUUUGGGUAUAGACAAUAAAGAACUGAAGUGCUCACUACUCAGUGAUUUGGAAAUUUUGAUGCUUGUAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001100409 | 3UTR | UUUCAAAUUUGGGUAUAGACAAUAAAGAACUGAAGUGCUCACUACUCAGUGAUUUGGAAAUUUUGAUGCUUGUAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001100409 | 3UTR | AAAUUUGGGUAUAGACAAUAAAGAACUGAAGUGCUCACUACUCAGUGAUUUGGAAAUUUUGAUGCUUGUAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001100409 | 3UTR | AUUUGGGUAUAGACAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000370014.3 | 3UTR | ACUUUCAAAUUUGGGUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
29 hsa-miR-4796-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT446014 VNN1 vanin 1 2 2
MIRT493828 FRS2 fibroblast growth factor receptor substrate 2 2 6
MIRT506324 ONECUT2 one cut homeobox 2 2 2
MIRT515488 PRKCD protein kinase C delta 2 4
MIRT515543 KRT222 keratin 222 2 4
MIRT518502 DEPTOR DEP domain containing MTOR interacting protein 2 6
MIRT519278 DDX55 DEAD-box helicase 55 2 2
MIRT528638 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT532130 NOL11 nucleolar protein 11 2 2
MIRT558240 EDA2R ectodysplasin A2 receptor 2 2
MIRT562293 GLO1 glyoxalase I 2 2
MIRT575346 Cacul1 CDK2 associated, cullin domain 1 2 2
MIRT610250 SLC35B4 solute carrier family 35 member B4 2 2
MIRT616752 SVOP SV2 related protein 2 2
MIRT627810 PTCHD1 patched domain containing 1 2 4
MIRT643062 CCDC149 coiled-coil domain containing 149 2 2
MIRT652031 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT658708 EMB embigin 2 2
MIRT687624 LRRC40 leucine rich repeat containing 40 2 2
MIRT692723 INPP5B inositol polyphosphate-5-phosphatase B 2 2
MIRT697508 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT702301 LAMP3 lysosomal associated membrane protein 3 2 2
MIRT718288 MINA ribosomal oxygenase 2 2 2
MIRT755767 BRCC3 BRCA1/BRCA2-containing complex subunit 3 5 1
MIRT755769 BARD1 BRCA1 associated RING domain 1 5 1
MIRT755770 ATM ATM serine/threonine kinase 5 1
MIRT755771 PARP14 poly(ADP-ribose) polymerase family member 14 5 1
MIRT755775 PARP2 poly(ADP-ribose) polymerase 2 5 1
MIRT755777 PARP11 poly(ADP-ribose) polymerase family member 11 5 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4796-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4796-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4796-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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