miRTarBase - #MIRT528699


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pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TRAF3IP2   
Synonyms ACT1, C6orf2, C6orf4, C6orf5, C6orf6, CANDF8, CIKS, PSORS13
Description TRAF3 interacting protein 2
Transcript NM_001164281   
Other Transcripts NM_001164283 , NM_147200 , NM_147686   
Expression
Putative miRNA Targets on TRAF3IP2
3'UTR of TRAF3IP2
(miRNA target sites are highlighted)		 
>TRAF3IP2|NM_001164281|3'UTR
   1 CACCGTTCATCCCCAGATCACTGAGGCCAGGCCATGTTTGGGGCCTTGTTCTGACAGCATTCTGGCTGAGGCTGGTCGGT
  81 AGCACTCCTGGCTGGTTTTTTTCTGTTCCTCCCCGAGAGGCCCTCTGGCCCCCAGGAAACCTGTTGTGCAGAGCTCTTCC
 161 CCGGAGACCTCCACACACCCTGGCTTTGAAGTGGAGTCTGTGACTGCTCTGCATTCTCTGCTTTTAAAAAAACCATTGCA
 241 GGTGCCAGTGTCCCATATGTTCCTCCTGACAGTTTGATGTGTCCATTCTGGGCCTCTCAGTGCTTAGCAAGTAGATAATG
 321 TAAGGGATGTGGCAGCAAATGGAAATGACTACAAACACTCTCCTATCAATCACTTCAGGCTACTTTTATGAGTTAGCCAG
 401 ATGCTTGTGTATCCTCAGACCAAACTGATTCATGTACAAATAATAAAATGTTTACTCTTTTGTAAGATTATGTTTTACTT
 481 ATCTCAAAGGAGATACATATAATTTATAATGATATGGGCAGTTGCTTCCAGGGACATCAACAAAGCTGCTTAGATATAAT
 561 ATTAGATAAATATAACAGACCACTCTGTATTAATGGATTAAAGCCAGCTAGTTAAACAACCCTTTTTAACCATAATCATG
 641 GAAGCTTTATTCTTGCAATAAAGATTTTTAGGCTGGGCGCAGTGACTCACACCTGTAATCCCAGCACTTTGGGAAGCTAA
 721 GGCAGGCAGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTGCTAAAATTACAA
 801 AAAAGTTAGCCGGGCATGGTGGTGTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCG
 881 GGAGGCAGAGGTTGCAGTGAGCCGAGATCATGTCACTGCACTCTAGCTTGGGAGACAGAGCGAGACTCCGTCTCAAAAAA
 961 CAAACAAACAAATAAAAACACCCATTTTTAACAAAACAACTTTATATAGCATACAGCCATGATTCTAAATAGTATGATTA
1041 TGGTTCTCAGGATCTGACTACATAGGTAAAAATATTTGCATATGTGTATGAAGTGTTGGGGGATGTAGGCTAGAATTGTA
1121 GTCTGTGTTCTAATTTTGGTTCTACCACCAATTAGCTGTATGACCTTTAGCAAGTCCTTTAACTTTTCTTAGATTCCAGG
1201 GACTCATTTATAAAATGACATGGACAAAAGCATCTCTAATCACTCTAAAAGATTTGAAGTCTAGGACCTAAATTCTAAAT
1281 ACTCTTTTGAGGAGTGACTGAGTTTTCATTTTCATAATTATGTCTCTCAGAGGACAAATTTACATTTTCTTAACAGAGAC
1361 ATTTTCTTCTTCTTTTTTTTTGTTTGAGACAGAGTCTCGCTCTGTCGTCCAGGCTGGAGTGCAGTGCTGCAATCTTGGCT
1441 CACTGCAACCTGCGCCTCCTGGGTTCAAGTGATTCTTCTGCCTCAACCTCCCAAGTAGCTAGACCTATAGGCGCCTGCCA
1521 CCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCATATTGGCCAGACTGGTCTCGAACTCCTGACCTTGT
1601 GATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCAGCCAACATTTTCCTCTTTTAA
1681 AAAATATCTTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCATGAGGTCAGGAGATCAAGACCA
1761 TCCTGGCTAACACGGTGAAACTCCATCTCTACTAAAAATACAAAAAAAATAGCCGGGCGTGGTGGCAGGCGCCTGTAGTC
1841 CCAGCTACTGGGGAGGCTGAGGCAGGAAAATGGTGTCAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT
1921 GCACTCCAGCCTGGGCAATAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACTTCAACAATACCCTCAGGT
2001 TGATAATTTTGGATATCTATCTGTATCTATATATCTTGTTTACCTGGTCTCCAGAAAAAGAACACATACACATATCCATA
2081 TATAAAATATGTATACATGTATCAAATCTACGTAAACTATAAAGGTGGGATGGCTTTAATTATGGCCCAAGCTACTAAGA
2161 CAATGAAGACTTTTTGGGGCTGCAAGCTACTGCTTCCCTTCTTTATCTACTAGCCTCTTAAACAAGGCTCACTTGTGCTA
2241 CAAGACAGTCCACCGTTTTGTTTTTTTTTTCTTTTTTTTGAGACAGGGTCTCACTCTTTCCCAGGCTGCAGTACAGTGAC
2321 ACAGTCTCAGCTCACTGCAGCTTTGACCTTGCCGGGCTCAGGTGACCCTTACACTTCAGCCTCCCAAGTAGCAGGGACTA
2401 TAGGTGTGCACCAACATGCTTGGTTAATTTTTGTATTTTTTGTAGAGACAGGGTTTTGCCATGTTGTCCAGGCTAGTCTC
2481 GAATTCCTGGGCTCAAGTGATTCACCTGCCTTGGCCTCCCAAAGTGCTAGGATTACAGATGGGAGCCACCACGCCCAGCC
2561 CAGTCCAGCTCTTATATGTAGCACAGGGAAAGGACAAATACTTGTCAACTATAAATAAGAAACATTGCTAATGCATTGCA
2641 AAGAACACTAGTTTCATTTACTTTATAACTTAGATGTCTACTGGGTGAGACGAATGTCTTTGTTCTTTAAAAAATAGGAA
2721 AAGAGAAGAAAAACTAGCATAACATAAGTACTCATTTGTAAGACTTTCTGACATGTAACATTAGTTCCGTAGTTTTGAGA
2801 CCTGGTAGAACTGACTTTCATATTTGGATAACCTGGAAAACACCCAAACACAAACTTCAAGTCTTCTTTCTCTTTTTTCA
2881 TTATCTTTTTTAGTCTGAGGTGACACCATCATTAAGGATTCGACACCCGTTTGTAAATAAAATGACATCAGCAATTACTC
2961 TGAAATGTTTCTAGTTTGCAAAGACTTAGCAATGTGATGTTATTAACCCTTCCTCCCTTCAGAGACCTGTCCTAAGCTCT
3041 GAACCACTCATTCCTTCCACTCTTCTTACCCCAGGTGGTTGATGAGCAGTGGTCCCTGGTGTTCCACAAAGAGTCATTAA
3121 AGTGTTACAGCTGGTAGCACTGGTAGCAAAAAAACAAACCAAAAAGTACACACAGACACACACACACACACGCACACATA
3201 CACACACACACGCACTTGGCCAAGTGACAAAAGCTTGGCCCCTGAAATTTCTATGAGATCCGATGACCACCAACATCAAA
3281 GCATTTTTTTTTTTTTTTTTTTGAGACGTAGTCTCGCTCTGTCACCCAGGCTAGAGTGCAGTGGTGCAATCACAGCTCAC
3361 TGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGTGACTACAGGCACCTGCCACCA
3441 TGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCG
3521 TGATCCATCCGCCTCGGCCTCCCAAATTGCTGGGATTACAGGCATGAGCCACCACGCCCGGCCCATCAAAGGAATTGTAA
3601 CAACTATTTGAGAGCACTGACAATAAGATTAACACTCGGTTGATTTAGATGTTATGCTGGTCCTCAGGCATTCATCTTTA
3681 GATATTTTTGGGGTGGAAGTGGGGTAGGGCTGACTTAGTAAAAATAACCTCTTAGCCCAAAGGCTTTATTCAGACTTACA
3761 CCGATTTGAGGGGTGGGTTTGTGGAATGCAAGGTTAGGTTCTTACCTAATATTTGATGACTAATTTAGAATTTTAAATGT
3841 AATTTTAAATTTTAGTGACTGGTTTCAAATCTATTTTAACTTCTAGATTGTTCAAAGAGGTCTCAGTACATGGCTACAAT
3921 CAAAGTATTAGACTAGCTATTTCTCAGCTCAGTGCTCAGAAAAATTATTACTGTTGATACCTTTTTCTTTGTTTCCTGTT
4001 AAATAAATCACCTCTTTAAAGACAGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acaUGUCGUCCGUGUCUGUcc 5'
             | ||:|  ||||||||  
Target 5' caaAAAGTACACACAGACAca 3'
 3160 - 3180 142.00 -13.40
2 
miRNA  3' acaugUCG--UCCGUGUCUGUCc 5'
               |||  |||  |||:||| 
Target 5' tgggaAGCTAAGG--CAGGCAGa 3'
 710 - 730 134.00 -12.90
3 
miRNA  3' acaugucGUCCG-UGUC-UGUCc 5'
                 ||||| :||| |||| 
Target 5' tctttccCAGGCTGCAGTACAGt 3'
 2295 - 2317 126.00 -15.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30520024 8 COSMIC
COSN30467157 68 COSMIC
COSN31544331 78 COSMIC
COSN31596907 114 COSMIC
COSN31564129 117 COSMIC
COSN30158946 133 COSMIC
COSN30524236 146 COSMIC
COSN30171108 156 COSMIC
COSN30535555 156 COSMIC
COSN14978207 1029 COSMIC
COSN26879699 1440 COSMIC
COSN27443700 1957 COSMIC
COSN17251462 2235 COSMIC
COSN9290710 2789 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs754257355 3 dbSNP
rs370109607 4 dbSNP
rs763055593 5 dbSNP
rs1221178139 11 dbSNP
rs1309935363 12 dbSNP
rs778653390 19 dbSNP
rs770569685 23 dbSNP
rs748766419 25 dbSNP
rs1362575400 26 dbSNP
rs1396322315 27 dbSNP
rs777590131 30 dbSNP
rs1296563854 34 dbSNP
rs545921552 38 dbSNP
rs938108507 43 dbSNP
rs910982011 44 dbSNP
rs1219324478 61 dbSNP
rs926454541 68 dbSNP
rs1486080410 74 dbSNP
rs981945492 77 dbSNP
rs1466544145 78 dbSNP
rs775821916 84 dbSNP
rs1446659585 88 dbSNP
rs1026271738 92 dbSNP
rs558920189 95 dbSNP
rs1384717265 96 dbSNP
rs1372868610 103 dbSNP
rs1422079687 103 dbSNP
rs1168725409 105 dbSNP
rs1453580734 106 dbSNP
rs1425833324 110 dbSNP
rs963102919 112 dbSNP
rs1386059941 113 dbSNP
rs1454219725 113 dbSNP
rs1315266480 114 dbSNP
rs1016412351 115 dbSNP
rs1183142148 117 dbSNP
rs1309067557 121 dbSNP
rs1317445706 121 dbSNP
rs540931128 129 dbSNP
rs1007279262 130 dbSNP
rs888880008 131 dbSNP
rs1016514613 132 dbSNP
rs1028451284 136 dbSNP
rs1199200440 141 dbSNP
rs573410496 142 dbSNP
rs901424648 149 dbSNP
rs1249427850 154 dbSNP
rs1157452706 160 dbSNP
rs564723096 162 dbSNP
rs958672956 163 dbSNP
rs549638395 165 dbSNP
rs138485893 192 dbSNP
rs1299376136 193 dbSNP
rs1374035700 194 dbSNP
rs1227680795 198 dbSNP
rs373361936 201 dbSNP
rs1286325232 208 dbSNP
rs1325434729 219 dbSNP
rs893778794 227 dbSNP
rs1311563177 231 dbSNP
rs548725969 233 dbSNP
rs1378483490 234 dbSNP
rs1206776281 244 dbSNP
rs181849404 247 dbSNP
rs1010052704 251 dbSNP
rs1180678386 252 dbSNP
rs557516296 255 dbSNP
rs1480971667 258 dbSNP
rs1054216289 259 dbSNP
rs560031482 263 dbSNP
rs1054269073 270 dbSNP
rs1354631980 280 dbSNP
rs1408622611 285 dbSNP
rs1306110137 287 dbSNP
rs1347314441 298 dbSNP
rs57533271 303 dbSNP
rs535947437 315 dbSNP
rs1274004159 319 dbSNP
rs1365805819 329 dbSNP
rs770136361 330 dbSNP
rs1273919402 332 dbSNP
rs1459768210 336 dbSNP
rs1369332489 340 dbSNP
rs574924474 347 dbSNP
rs949241084 353 dbSNP
rs746297105 357 dbSNP
rs1490653330 365 dbSNP
rs1050711385 369 dbSNP
rs1245318190 377 dbSNP
rs1187913397 379 dbSNP
rs1382282518 380 dbSNP
rs1179284556 382 dbSNP
rs1166154639 383 dbSNP
rs933776074 392 dbSNP
rs918326297 394 dbSNP
rs972672969 404 dbSNP
rs553365128 407 dbSNP
rs541258310 422 dbSNP
rs972006485 425 dbSNP
rs1488677347 431 dbSNP
rs1290681562 437 dbSNP
rs963635295 445 dbSNP
rs895484741 450 dbSNP
rs1226354608 459 dbSNP
rs985003230 472 dbSNP
rs1360848796 483 dbSNP
rs1209805288 491 dbSNP
rs1219799364 495 dbSNP
rs1355353817 502 dbSNP
rs1449097385 506 dbSNP
rs958704259 507 dbSNP
rs1034383863 513 dbSNP
rs9487669 522 dbSNP
rs986201689 526 dbSNP
rs1386591696 534 dbSNP
rs1020354830 545 dbSNP
rs1238756503 546 dbSNP
rs1335759456 554 dbSNP
rs190544260 557 dbSNP
rs1388246285 562 dbSNP
rs1388977332 562 dbSNP
rs1030070671 565 dbSNP
rs1338904350 568 dbSNP
rs1383654629 569 dbSNP
rs1302883805 572 dbSNP
rs1283008597 578 dbSNP
rs760508833 578 dbSNP
rs1353452030 580 dbSNP
rs1423000924 581 dbSNP
rs1362669781 589 dbSNP
rs1463792248 589 dbSNP
rs1159370077 594 dbSNP
rs1206461910 609 dbSNP
rs397959916 612 dbSNP
rs57931464 612 dbSNP
rs771573076 612 dbSNP
rs1362049423 620 dbSNP
rs879278065 621 dbSNP
rs1380387894 626 dbSNP
rs1054301709 631 dbSNP
rs1471108976 637 dbSNP
rs1159685634 638 dbSNP
rs1411004874 641 dbSNP
rs998305343 654 dbSNP
rs965541130 657 dbSNP
rs1021150181 663 dbSNP
rs1433631070 665 dbSNP
rs1267953321 672 dbSNP
rs529658157 678 dbSNP
rs894052716 679 dbSNP
rs9384797 685 dbSNP
rs1443600850 688 dbSNP
rs1002650954 692 dbSNP
rs757972095 694 dbSNP
rs1288218693 703 dbSNP
rs1327545095 717 dbSNP
rs1225661745 723 dbSNP
rs905276052 725 dbSNP
rs1345268812 727 dbSNP
rs1046542878 738 dbSNP
rs1199437952 739 dbSNP
rs949189281 743 dbSNP
rs1051228206 744 dbSNP
rs1439004782 746 dbSNP
rs1182845158 759 dbSNP
rs372268916 762 dbSNP
rs918348034 765 dbSNP
rs759595551 771 dbSNP
rs1378474226 774 dbSNP
rs1465701625 779 dbSNP
rs941916169 782 dbSNP
rs1398752190 783 dbSNP
rs940857696 785 dbSNP
rs909346951 788 dbSNP
rs1349172952 795 dbSNP
rs569493135 797 dbSNP
rs1346643455 799 dbSNP
rs985804751 800 dbSNP
rs1283101420 802 dbSNP
rs1253838487 810 dbSNP
rs140677458 811 dbSNP
rs923005443 812 dbSNP
rs747576222 814 dbSNP
rs1273901005 816 dbSNP
rs1482018361 822 dbSNP
rs529732016 824 dbSNP
rs1201366547 827 dbSNP
rs1267827626 830 dbSNP
rs1299013441 847 dbSNP
rs542670635 848 dbSNP
rs1197043341 850 dbSNP
rs1374936614 851 dbSNP
rs975833168 855 dbSNP
rs967119744 858 dbSNP
rs1400282526 859 dbSNP
rs1382882716 861 dbSNP
rs1174346174 862 dbSNP
rs1430557908 863 dbSNP
rs1466507014 864 dbSNP
rs958981781 879 dbSNP
rs56410656 880 dbSNP
rs1427077478 885 dbSNP
rs1294592365 886 dbSNP
rs1010157843 892 dbSNP
rs1263565166 897 dbSNP
rs1298751716 898 dbSNP
rs1327813067 901 dbSNP
rs151268687 902 dbSNP
rs1033048173 903 dbSNP
rs377608286 904 dbSNP
rs1265896619 905 dbSNP
rs957207763 910 dbSNP
rs1207838524 917 dbSNP
rs905225091 918 dbSNP
rs1264198154 923 dbSNP
rs564659600 923 dbSNP
rs1388436039 925 dbSNP
rs1046449796 927 dbSNP
rs754611513 931 dbSNP
rs769397580 932 dbSNP
rs1368336506 940 dbSNP
rs1456761206 940 dbSNP
rs1036162582 941 dbSNP
rs1390430892 942 dbSNP
rs941890635 945 dbSNP
rs909128397 946 dbSNP
rs368592340 948 dbSNP
rs192431256 949 dbSNP
rs563859975 950 dbSNP
rs1430316666 967 dbSNP
rs1324858595 971 dbSNP
rs776622823 973 dbSNP
rs896779922 973 dbSNP
rs998278566 973 dbSNP
rs1246362192 977 dbSNP
rs1462716704 979 dbSNP
rs1182521361 981 dbSNP
rs1336296708 982 dbSNP
rs781582102 985 dbSNP
rs1161860292 996 dbSNP
rs1413187270 996 dbSNP
rs1456990092 998 dbSNP
rs1405339654 1010 dbSNP
rs1385988805 1020 dbSNP
rs11153297 1029 dbSNP
rs747477741 1035 dbSNP
rs574942845 1038 dbSNP
rs1167059408 1040 dbSNP
rs1290087503 1040 dbSNP
rs1329623928 1041 dbSNP
rs888193751 1046 dbSNP
rs1266549026 1050 dbSNP
rs1325893950 1061 dbSNP
rs1210958826 1078 dbSNP
rs756070078 1079 dbSNP
rs1238816585 1105 dbSNP
rs1482288174 1107 dbSNP
rs142369053 1109 dbSNP
rs1253080494 1116 dbSNP
rs1472506766 1116 dbSNP
rs1180455629 1122 dbSNP
rs927549783 1133 dbSNP
rs1460472144 1138 dbSNP
rs1240661583 1139 dbSNP
rs1202328764 1150 dbSNP
rs1464057243 1153 dbSNP
rs981690967 1164 dbSNP
rs950095169 1165 dbSNP
rs534677312 1169 dbSNP
rs1274175850 1201 dbSNP
rs1214327632 1210 dbSNP
rs1369406033 1215 dbSNP
rs545148492 1216 dbSNP
rs750530543 1234 dbSNP
rs1278102077 1242 dbSNP
rs1310533863 1246 dbSNP
rs1286165868 1251 dbSNP
rs1246915557 1259 dbSNP
rs1482997396 1260 dbSNP
rs577154729 1275 dbSNP
rs1180531378 1284 dbSNP
rs765494294 1285 dbSNP
rs1191415195 1289 dbSNP
rs1334740558 1289 dbSNP
rs1032584037 1298 dbSNP
rs1169929867 1301 dbSNP
rs1033045812 1322 dbSNP
rs1355019086 1326 dbSNP
rs1306067949 1329 dbSNP
rs1351411301 1331 dbSNP
rs757462245 1354 dbSNP
rs1436863530 1356 dbSNP
rs1274545662 1360 dbSNP
rs1327983397 1369 dbSNP
rs985275396 1375 dbSNP
rs1415581950 1381 dbSNP
rs1298393932 1382 dbSNP
rs1341486216 1382 dbSNP
rs557886377 1382 dbSNP
rs969644899 1384 dbSNP
rs1292562776 1386 dbSNP
rs752519353 1387 dbSNP
rs1024939192 1394 dbSNP
rs1029996244 1395 dbSNP
rs558607525 1398 dbSNP
rs897902719 1399 dbSNP
rs1015461441 1406 dbSNP
rs149136178 1407 dbSNP
rs887635518 1413 dbSNP
rs1039058254 1417 dbSNP
rs763159749 1423 dbSNP
rs931861131 1424 dbSNP
rs1233932126 1426 dbSNP
rs759409283 1433 dbSNP
rs1015300629 1439 dbSNP
rs1005202384 1441 dbSNP
rs774372983 1442 dbSNP
rs867614610 1453 dbSNP
rs901776353 1454 dbSNP
rs1040009350 1456 dbSNP
rs569555620 1461 dbSNP
rs945756172 1465 dbSNP
rs1436446187 1470 dbSNP
rs867653538 1475 dbSNP
rs775423497 1476 dbSNP
rs145220678 1478 dbSNP
rs1054852174 1486 dbSNP
rs1358940528 1489 dbSNP
rs144962646 1495 dbSNP
rs990337085 1495 dbSNP
rs1288200755 1508 dbSNP
rs1313075662 1511 dbSNP
rs879362275 1512 dbSNP
rs762519648 1513 dbSNP
rs905990128 1516 dbSNP
rs1464096694 1517 dbSNP
rs1190393548 1526 dbSNP
rs1278867923 1544 dbSNP
rs1439853853 1548 dbSNP
rs1351405490 1556 dbSNP
rs1046410318 1560 dbSNP
rs1411395795 1562 dbSNP
rs1458556597 1568 dbSNP
rs950362966 1576 dbSNP
rs925421616 1577 dbSNP
rs1433071547 1583 dbSNP
rs535962932 1584 dbSNP
rs777169267 1585 dbSNP
rs969592478 1588 dbSNP
rs988802660 1591 dbSNP
rs1159973777 1595 dbSNP
rs1331678497 1599 dbSNP
rs1229384225 1600 dbSNP
rs1268445843 1605 dbSNP
rs1419147365 1606 dbSNP
rs1202904755 1607 dbSNP
rs1280156331 1610 dbSNP
rs188240738 1611 dbSNP
rs992155232 1614 dbSNP
rs1255246112 1619 dbSNP
rs1473482819 1619 dbSNP
rs1182621645 1621 dbSNP
rs1469019592 1622 dbSNP
rs547452531 1626 dbSNP
rs1248843576 1633 dbSNP
rs1200579533 1649 dbSNP
rs1403011039 1656 dbSNP
rs1413925536 1659 dbSNP
rs926059623 1661 dbSNP
rs868162907 1678 dbSNP
rs962061320 1687 dbSNP
rs1218965259 1688 dbSNP
rs1014996357 1691 dbSNP
rs953889000 1695 dbSNP
rs1348964160 1696 dbSNP
rs535507950 1696 dbSNP
rs976990062 1701 dbSNP
rs1345125338 1712 dbSNP
rs1222034498 1714 dbSNP
rs1199372530 1721 dbSNP
rs1278187517 1729 dbSNP
rs961340409 1733 dbSNP
rs887886981 1739 dbSNP
rs1250825395 1742 dbSNP
rs1029209195 1751 dbSNP
rs995998949 1755 dbSNP
rs901764855 1757 dbSNP
rs1201303649 1761 dbSNP
rs1378412620 1769 dbSNP
rs1404075208 1773 dbSNP
rs1202139117 1779 dbSNP
rs952334262 1781 dbSNP
rs1373000973 1785 dbSNP
rs1430978436 1786 dbSNP
rs1343325872 1787 dbSNP
rs1033429633 1788 dbSNP
rs532036541 1792 dbSNP
rs1303028078 1794 dbSNP
rs945701543 1800 dbSNP
rs1231937693 1801 dbSNP
rs1300592191 1808 dbSNP
rs1343614284 1809 dbSNP
rs1453938213 1810 dbSNP
rs906265872 1810 dbSNP
rs1273758267 1813 dbSNP
rs1479571030 1814 dbSNP
rs571217535 1815 dbSNP
rs1320276179 1818 dbSNP
rs1344124623 1819 dbSNP
rs1014825280 1826 dbSNP
rs1156253630 1828 dbSNP
rs552633087 1830 dbSNP
rs568437256 1831 dbSNP
rs563822596 1835 dbSNP
rs1279092561 1848 dbSNP
rs1294453480 1849 dbSNP
rs1391061177 1875 dbSNP
rs1439732037 1880 dbSNP
rs1323425301 1882 dbSNP
rs1177690560 1883 dbSNP
rs1480308012 1889 dbSNP
rs1267138320 1890 dbSNP
rs1305665340 1892 dbSNP
rs1224993981 1894 dbSNP
rs183487901 1904 dbSNP
rs1053278244 1906 dbSNP
rs1355328980 1907 dbSNP
rs936009065 1911 dbSNP
rs1486292031 1914 dbSNP
rs1465445894 1915 dbSNP
rs1187999354 1916 dbSNP
rs1260309001 1932 dbSNP
rs1426047078 1946 dbSNP
rs1166041027 1949 dbSNP
rs1241614678 1949 dbSNP
rs1213704753 1952 dbSNP
rs1313919086 1953 dbSNP
rs1334161427 1957 dbSNP
rs1222729553 1958 dbSNP
rs1287760441 1959 dbSNP
rs1359195547 1960 dbSNP
rs1397747540 1966 dbSNP
rs1054143713 1968 dbSNP
rs935712732 1969 dbSNP
rs927074198 1970 dbSNP
rs1360811469 1971 dbSNP
rs1330049472 1972 dbSNP
rs1286656475 1974 dbSNP
rs1259058969 1975 dbSNP
rs1484251474 1975 dbSNP
rs1049709697 1978 dbSNP
rs1045252306 1979 dbSNP
rs1474472099 1980 dbSNP
rs1157867798 1981 dbSNP
rs1184748488 1981 dbSNP
rs1289957754 1981 dbSNP
rs1325742121 1981 dbSNP
rs1338759297 1981 dbSNP
rs1342931638 1981 dbSNP
rs1413786189 1981 dbSNP
rs1457464091 1981 dbSNP
rs397888583 1981 dbSNP
rs948243134 1981 dbSNP
rs1177808069 1982 dbSNP
rs573198853 1982 dbSNP
rs1469676553 1983 dbSNP
rs1223458527 1984 dbSNP
rs1350827810 1984 dbSNP
rs1314081900 1985 dbSNP
rs1427674802 1985 dbSNP
rs542415876 1989 dbSNP
rs867295707 1998 dbSNP
rs992440360 1999 dbSNP
rs922661540 2004 dbSNP
rs976641210 2012 dbSNP
rs962302881 2013 dbSNP
rs114806915 2020 dbSNP
rs908477744 2023 dbSNP
rs984816502 2029 dbSNP
rs1202993755 2031 dbSNP
rs952219522 2031 dbSNP
rs1459888784 2036 dbSNP
rs1370942407 2040 dbSNP
rs1259808900 2049 dbSNP
rs1296738383 2051 dbSNP
rs1029117354 2058 dbSNP
rs995946580 2069 dbSNP
rs559627154 2075 dbSNP
rs1302801745 2076 dbSNP
rs1345767229 2083 dbSNP
rs1231262258 2090 dbSNP
rs773805718 2098 dbSNP
rs1001866153 2108 dbSNP
rs1275904957 2109 dbSNP
rs970526213 2111 dbSNP
rs772634303 2112 dbSNP
rs1292984718 2118 dbSNP
rs769462553 2118 dbSNP
rs1229622798 2119 dbSNP
rs1014443578 2121 dbSNP
rs1018745681 2123 dbSNP
rs747702344 2125 dbSNP
rs1170425709 2134 dbSNP
rs1390695268 2140 dbSNP
rs1168038673 2143 dbSNP
rs891711688 2143 dbSNP
rs1053311095 2144 dbSNP
rs1335441666 2146 dbSNP
rs374572454 2165 dbSNP
rs776292501 2168 dbSNP
rs1452571099 2169 dbSNP
rs879092034 2170 dbSNP
rs541494817 2183 dbSNP
rs1404506855 2186 dbSNP
rs772448844 2191 dbSNP
rs1299077269 2193 dbSNP
rs1044193077 2197 dbSNP
rs1339267130 2205 dbSNP
rs948189839 2206 dbSNP
rs1049742355 2208 dbSNP
rs1322650897 2210 dbSNP
rs932629913 2210 dbSNP
rs1168617589 2211 dbSNP
rs1446630738 2214 dbSNP
rs1466794317 2215 dbSNP
rs191696872 2223 dbSNP
rs540574486 2227 dbSNP
rs1475058433 2229 dbSNP
rs1184669385 2230 dbSNP
rs187010950 2231 dbSNP
rs918061922 2232 dbSNP
rs201800803 2246 dbSNP
rs756658123 2254 dbSNP
rs1392550556 2255 dbSNP
rs1458921398 2257 dbSNP
rs1321272378 2258 dbSNP
rs1325881198 2258 dbSNP
rs983946250 2260 dbSNP
rs926507425 2261 dbSNP
rs931257714 2261 dbSNP
rs1252577458 2265 dbSNP
rs370896152 2265 dbSNP
rs1320954368 2271 dbSNP
rs1332194229 2271 dbSNP
rs1454556636 2271 dbSNP
rs1196222223 2273 dbSNP
rs1403265778 2280 dbSNP
rs1475452039 2280 dbSNP
rs970776743 2280 dbSNP
rs1186920607 2288 dbSNP
rs1416020274 2301 dbSNP
rs1480196364 2321 dbSNP
rs1160128238 2322 dbSNP
rs1384348608 2341 dbSNP
rs908152640 2352 dbSNP
rs558902569 2353 dbSNP
rs1024729813 2354 dbSNP
rs149985533 2354 dbSNP
rs956477254 2358 dbSNP
rs1031842022 2367 dbSNP
rs575902764 2377 dbSNP
rs1223352208 2384 dbSNP
rs1279713667 2389 dbSNP
rs1359644002 2393 dbSNP
rs546616141 2395 dbSNP
rs553304013 2397 dbSNP
rs1280703260 2401 dbSNP
rs534871451 2403 dbSNP
rs201818157 2405 dbSNP
rs1028501668 2406 dbSNP
rs1392417960 2410 dbSNP
rs966115736 2413 dbSNP
rs1373058738 2420 dbSNP
rs1018692001 2422 dbSNP
rs1010035634 2435 dbSNP
rs996874530 2438 dbSNP
rs1296762665 2441 dbSNP
rs1426848226 2442 dbSNP
rs536075297 2449 dbSNP
rs1163090702 2452 dbSNP
rs1422813467 2454 dbSNP
rs1365553313 2460 dbSNP
rs1032970635 2461 dbSNP
rs1041139875 2464 dbSNP
rs1410813673 2473 dbSNP
rs940135048 2476 dbSNP
rs1000253260 2480 dbSNP
rs905557627 2499 dbSNP
rs1236312568 2503 dbSNP
rs1182449581 2514 dbSNP
rs887187704 2519 dbSNP
rs771241886 2524 dbSNP
rs1044098133 2532 dbSNP
rs183607050 2552 dbSNP
rs895571113 2553 dbSNP
rs1483944927 2554 dbSNP
rs1290573176 2562 dbSNP
rs1250126235 2575 dbSNP
rs553631981 2583 dbSNP
rs1201232122 2587 dbSNP
rs1219690709 2592 dbSNP
rs1453814534 2596 dbSNP
rs1056638729 2601 dbSNP
rs1172380324 2601 dbSNP
rs1462853018 2604 dbSNP
rs1167681206 2605 dbSNP
rs1394720334 2607 dbSNP
rs1389351852 2608 dbSNP
rs1325037295 2620 dbSNP
rs1371109292 2624 dbSNP
rs758898201 2629 dbSNP
rs1352232082 2631 dbSNP
rs374060782 2632 dbSNP
rs1260731748 2634 dbSNP
rs926546552 2640 dbSNP
rs940907889 2646 dbSNP
rs886670809 2648 dbSNP
rs1344182421 2658 dbSNP
rs981058734 2661 dbSNP
rs1049347182 2666 dbSNP
rs201372735 2670 dbSNP
rs34539212 2670 dbSNP
rs1337129526 2672 dbSNP
rs1305362723 2675 dbSNP
rs1274027805 2676 dbSNP
rs748528640 2677 dbSNP
rs917610131 2678 dbSNP
rs41289894 2680 dbSNP
rs1193050726 2685 dbSNP
rs956480285 2687 dbSNP
rs571162490 2691 dbSNP
rs978912318 2692 dbSNP
rs1460500097 2707 dbSNP
rs968832408 2708 dbSNP
rs1028575566 2715 dbSNP
rs374986461 2715 dbSNP
rs879759302 2715 dbSNP
rs1294703553 2717 dbSNP
rs549699767 2718 dbSNP
rs757380698 2725 dbSNP
rs912013694 2733 dbSNP
rs1334415158 2734 dbSNP
rs1387279330 2739 dbSNP
rs550405504 2744 dbSNP
rs781715284 2748 dbSNP
rs887217354 2748 dbSNP
rs1453026832 2753 dbSNP
rs1205075325 2767 dbSNP
rs531256206 2774 dbSNP
rs1178403561 2781 dbSNP
rs1189051500 2784 dbSNP
rs754074851 2788 dbSNP
rs978674350 2789 dbSNP
rs970399433 2803 dbSNP
rs570332369 2805 dbSNP
rs1346472964 2808 dbSNP
rs530584861 2813 dbSNP
rs1448329741 2820 dbSNP
rs1013937848 2825 dbSNP
rs895566015 2835 dbSNP
rs1416443037 2844 dbSNP
rs1293705957 2853 dbSNP
rs1354539247 2857 dbSNP
rs1231690132 2869 dbSNP
rs1204006539 2872 dbSNP
rs1309349403 2872 dbSNP
rs1238412087 2877 dbSNP
rs1350671561 2879 dbSNP
rs1015375236 2881 dbSNP
rs1242541427 2889 dbSNP
rs1212159032 2891 dbSNP
rs1257268433 2892 dbSNP
rs904993789 2895 dbSNP
rs1044897485 2897 dbSNP
rs764423848 2909 dbSNP
rs886579915 2910 dbSNP
rs193081739 2921 dbSNP
rs949371315 2922 dbSNP
rs1282999314 2926 dbSNP
rs917825194 2927 dbSNP
rs1436541855 2928 dbSNP
rs1313337117 2929 dbSNP
rs754806783 2935 dbSNP
rs930869815 2958 dbSNP
rs1231360418 2959 dbSNP
rs1328402289 2962 dbSNP
rs1412687852 2973 dbSNP
rs1300184197 2975 dbSNP
rs900768968 2982 dbSNP
rs926241 2985 dbSNP
rs111496051 2993 dbSNP
rs1235690793 2996 dbSNP
rs1382772015 3002 dbSNP
rs1280232598 3011 dbSNP
rs1346252981 3017 dbSNP
rs1207708967 3020 dbSNP
rs1234303457 3022 dbSNP
rs925051208 3031 dbSNP
rs188896539 3045 dbSNP
rs1247805482 3058 dbSNP
rs988941585 3078 dbSNP
rs1174243496 3086 dbSNP
rs1394394658 3094 dbSNP
rs184152004 3098 dbSNP
rs773220840 3102 dbSNP
rs934754961 3108 dbSNP
rs1476213682 3111 dbSNP
rs755945258 3113 dbSNP
rs1373363430 3115 dbSNP
rs1441728997 3120 dbSNP
rs1303366907 3122 dbSNP
rs764608778 3130 dbSNP
rs975604254 3141 dbSNP
rs966037915 3144 dbSNP
rs1307214556 3147 dbSNP
rs147436836 3155 dbSNP
rs1444797256 3156 dbSNP
rs951322290 3160 dbSNP
rs969929435 3164 dbSNP
rs1252352950 3168 dbSNP
rs1452526678 3171 dbSNP
rs576012316 3175 dbSNP
rs1188156534 3176 dbSNP
rs1271182462 3179 dbSNP
rs1022927463 3181 dbSNP
rs1244379799 3188 dbSNP
rs992475705 3190 dbSNP
rs959721926 3191 dbSNP
rs1271224583 3192 dbSNP
rs1396923349 3192 dbSNP
rs146668280 3192 dbSNP
rs554470110 3192 dbSNP
rs757986878 3192 dbSNP
rs764804212 3192 dbSNP
rs1213171225 3195 dbSNP
rs1361766160 3195 dbSNP
rs1045328618 3196 dbSNP
rs563405165 3207 dbSNP
rs190908201 3211 dbSNP
rs1052337646 3212 dbSNP
rs1217940151 3212 dbSNP
rs1449306101 3212 dbSNP
rs373509113 3212 dbSNP
rs934998985 3212 dbSNP
rs1023078789 3216 dbSNP
rs1475678467 3216 dbSNP
rs1164404217 3217 dbSNP
rs1392394629 3221 dbSNP
rs888194242 3232 dbSNP
rs1341810817 3240 dbSNP
rs1027786105 3242 dbSNP
rs1345079532 3244 dbSNP
rs995445571 3248 dbSNP
rs931771251 3249 dbSNP
rs1356458522 3258 dbSNP
rs900762547 3261 dbSNP
rs1039287020 3262 dbSNP
rs1008842553 3267 dbSNP
rs1224938165 3272 dbSNP
rs890428646 3273 dbSNP
rs976013990 3277 dbSNP
rs1053549520 3283 dbSNP
rs965543696 3286 dbSNP
rs1317198744 3289 dbSNP
rs1453314922 3298 dbSNP
rs1159192528 3303 dbSNP
rs1284622949 3303 dbSNP
rs1366927835 3303 dbSNP
rs1485845087 3303 dbSNP
rs1491528079 3303 dbSNP
rs35454154 3303 dbSNP
rs527979144 3303 dbSNP
rs536555714 3303 dbSNP
rs66883611 3303 dbSNP
rs761471496 3303 dbSNP
rs763849514 3303 dbSNP
rs1176002477 3304 dbSNP
rs1491410910 3304 dbSNP
rs753622169 3304 dbSNP
rs775380298 3304 dbSNP
rs1376457030 3305 dbSNP
rs1334521793 3307 dbSNP
rs1411438287 3308 dbSNP
rs1338315588 3309 dbSNP
rs1443863520 3310 dbSNP
rs553888330 3315 dbSNP
rs912810052 3319 dbSNP
rs538355779 3320 dbSNP
rs1282369794 3321 dbSNP
rs1348404785 3333 dbSNP
rs1209846622 3336 dbSNP
rs571295482 3340 dbSNP
rs926038729 3344 dbSNP
rs1182752100 3345 dbSNP
rs565011791 3358 dbSNP
rs1445804948 3361 dbSNP
rs1243063901 3363 dbSNP
rs995491572 3367 dbSNP
rs948558453 3368 dbSNP
rs915817391 3370 dbSNP
rs1434543050 3371 dbSNP
rs992714200 3376 dbSNP
rs959963765 3377 dbSNP
rs537876196 3378 dbSNP
rs1329051794 3379 dbSNP
rs776212641 3385 dbSNP
rs908160959 3386 dbSNP
rs1334721569 3387 dbSNP
rs369258405 3388 dbSNP
rs1443934449 3390 dbSNP
rs1274071501 3394 dbSNP
rs1195475101 3396 dbSNP
rs982862202 3409 dbSNP
rs567251346 3410 dbSNP
rs952484573 3415 dbSNP
rs1013856785 3417 dbSNP
rs1027187291 3418 dbSNP
rs1456534972 3419 dbSNP
rs994949370 3441 dbSNP
rs1253651832 3444 dbSNP
rs1030882607 3445 dbSNP
rs1246798131 3446 dbSNP
rs1382022544 3449 dbSNP
rs999430033 3452 dbSNP
rs1282370715 3453 dbSNP
rs1475940238 3455 dbSNP
rs1168209765 3458 dbSNP
rs1399050610 3458 dbSNP
rs1463649138 3460 dbSNP
rs1327353714 3467 dbSNP
rs1444217101 3472 dbSNP
rs964878586 3473 dbSNP
rs1327888975 3474 dbSNP
rs548947749 3475 dbSNP
rs1009081476 3479 dbSNP
rs1227879567 3485 dbSNP
rs1269883150 3486 dbSNP
rs1163736965 3490 dbSNP
rs1043396634 3494 dbSNP
rs1382787662 3497 dbSNP
rs548265296 3505 dbSNP
rs1471418343 3506 dbSNP
rs1233838459 3510 dbSNP
rs890711972 3518 dbSNP
rs369773556 3519 dbSNP
rs999296351 3520 dbSNP
rs1429527077 3521 dbSNP
rs1192889775 3527 dbSNP
rs1421868273 3527 dbSNP
rs1166564545 3528 dbSNP
rs1294201953 3528 dbSNP
rs534617832 3530 dbSNP
rs1043563823 3531 dbSNP
rs1291781688 3533 dbSNP
rs1387020809 3536 dbSNP
rs900261431 3542 dbSNP
rs79219929 3545 dbSNP
rs1338067010 3546 dbSNP
rs1235388089 3547 dbSNP
rs547925088 3554 dbSNP
rs1056989002 3557 dbSNP
rs1334350148 3562 dbSNP
rs938543847 3563 dbSNP
rs185339622 3564 dbSNP
rs879661906 3566 dbSNP
rs930237179 3572 dbSNP
rs565411484 3573 dbSNP
rs549839622 3574 dbSNP
rs952510218 3575 dbSNP
rs531640685 3576 dbSNP
rs1454252369 3577 dbSNP
rs975105414 3579 dbSNP
rs963783696 3580 dbSNP
rs1416390971 3589 dbSNP
rs1313763504 3595 dbSNP
rs182094502 3597 dbSNP
rs1024141158 3599 dbSNP
rs540573573 3605 dbSNP
rs1309277189 3606 dbSNP
rs1403880920 3608 dbSNP
rs1347642196 3610 dbSNP
rs1284487963 3615 dbSNP
rs1350583476 3620 dbSNP
rs10484479 3623 dbSNP
rs1257196719 3629 dbSNP
rs1482743278 3631 dbSNP
rs1403000068 3637 dbSNP
rs961065711 3638 dbSNP
rs1158411021 3639 dbSNP
rs1419143611 3644 dbSNP
rs190424035 3645 dbSNP
rs368098813 3647 dbSNP
rs370720926 3655 dbSNP
rs1436412802 3657 dbSNP
rs1200461044 3661 dbSNP
rs1174049574 3663 dbSNP
rs1358317306 3667 dbSNP
rs374520422 3669 dbSNP
rs1300051501 3674 dbSNP
rs1245111198 3675 dbSNP
rs1374219275 3676 dbSNP
rs904493383 3682 dbSNP
rs779506148 3684 dbSNP
rs186483827 3689 dbSNP
rs556324421 3691 dbSNP
rs1012966113 3699 dbSNP
rs544801832 3701 dbSNP
rs770856975 3702 dbSNP
rs375881030 3716 dbSNP
rs900133270 3720 dbSNP
rs1207659102 3735 dbSNP
rs1040437682 3748 dbSNP
rs894570063 3759 dbSNP
rs1056977866 3761 dbSNP
rs537939206 3762 dbSNP
rs181857341 3763 dbSNP
rs1283638995 3772 dbSNP
rs1222547483 3773 dbSNP
rs1172889671 3778 dbSNP
rs375036032 3781 dbSNP
rs887010479 3792 dbSNP
rs150533032 3793 dbSNP
rs1465212188 3795 dbSNP
rs1365024580 3797 dbSNP
rs190151980 3802 dbSNP
rs1442304401 3805 dbSNP
rs1430809297 3812 dbSNP
rs1344035919 3814 dbSNP
rs1366018925 3817 dbSNP
rs930102780 3819 dbSNP
rs1297341276 3822 dbSNP
rs1320483628 3835 dbSNP
rs529359237 3844 dbSNP
rs1431936578 3855 dbSNP
rs931261600 3870 dbSNP
rs566336412 3890 dbSNP
rs1246049905 3894 dbSNP
rs1188022590 3898 dbSNP
rs1487404691 3898 dbSNP
rs778134982 3901 dbSNP
rs75432622 3904 dbSNP
rs1188412690 3905 dbSNP
rs1477621093 3909 dbSNP
rs539248419 3910 dbSNP
rs1168722579 3914 dbSNP
rs1409070356 3915 dbSNP
rs1486241476 3925 dbSNP
rs1462027645 3928 dbSNP
rs942420387 3933 dbSNP
rs1348627110 3950 dbSNP
rs1433449448 3964 dbSNP
rs992562969 3966 dbSNP
rs1206775736 3967 dbSNP
rs912346797 3968 dbSNP
rs1217644164 3977 dbSNP
rs571503760 3978 dbSNP
rs960844336 3980 dbSNP
rs1031031755 3981 dbSNP
rs1228361415 3986 dbSNP
rs977906975 3990 dbSNP
rs987597605 4004 dbSNP
rs112217872 4009 dbSNP
rs955073901 4013 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acaugucguccgugUCUGUCc 5'
                        |||||| 
Target 5' ----cuagcuugggAGACAGa 3'
 		1 - 17
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 10758.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acAUGUCG--UCCGUGUCUGUCc 5'
            | :|||  :||   |||||| 
Target 5' acUCUAGCUUGGG---AGACAGa 3'
 		1 - 20
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000368761.5 | 3UTR | CUAGCUUGGGAGACAGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000368761.5 | 3UTR | ACUCUAGCUUGGGAGACAGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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