pre-miRNA Information
pre-miRNA hsa-mir-4291   
Genomic Coordinates chr9: 93819357 - 93819421
Description Homo sapiens miR-4291 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4291
Sequence 11| UUCAGCAGGAACAGCU |26
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1265713434 9 dbSNP
rs1433969451 12 dbSNP
rs1372852268 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ATF3   
Synonyms -
Description activating transcription factor 3
Transcript NM_001040619   
Other Transcripts NM_001030287 , NM_001674   
Expression
Putative miRNA Targets on ATF3
3'UTR of ATF3
(miRNA target sites are highlighted)
>ATF3|NM_001040619|3'UTR
   1 GGTATCTGAACTGCAGCTTCAGTATTAGCAGAGCCACAGGCCGCCTCTGTGGCATCACCAGGGTTTCTCTGAAGAAGAGG
  81 GTCTGCATTTTCCTAAACCCAGTGCTGCTCTCCCATCTCCCATCTTCCTCTCGCAGCTTGATGAGCCCCGGTGTGTCCCA
 161 GGTACACCCCTGCATCCAGGCAGCAGCCCAGGCCACCCCCTCCTCACTGGCCCTTGGCTCCTTTCTTGATGCCTCTGTTG
 241 CTTGTCCCCCAGGAGTCGGAGAAGCTGGAAAGTGTGAATGCTGAACTGAAGGCTCAGATTGAGGAGCTCAAGAACGAGAA
 321 GCAGCATTTGATATACATGCTCAACCTTCATCGGCCCACGTGTATTGTCCGGGCTCAGAATGGGAGGACTCCAGAAGATG
 401 AGAGAAACCTCTTTATCCAACAGATAAAAGAAGGAACATTGCAGAGCTAAGCAGTCGTGGTATGGGGGCGACTGGGGAGT
 481 CCTCATTGAATCCTCATTTTATACCCAAAACCCTGAAGCCATTGGAGAGCTGTCTTCCTGTGTACCTCTAGAATCCCAGC
 561 AGCAGAGAACCATCAAGGCGGGAGGGCCTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAGTGGGTCTTGGACC
 641 AGGGCAAGTGCATCTTTGCCTCAACTCCAGGATTTAGGCCTTAACACACTGGCCATTCTTATGTTCCAGATGGCCCCCAG
 721 CTGGTGTCCTGCCCGCCTTTCATCTGGATTCTACAAAAAACCAGGATGCCCACCGTTAGGATTCAGGCAGCAGTGTCTGT
 801 ACCTCGGGTGGGAGGGATGGGGCCATCTCCTTCACCGTGGCTACCATTGTCACTCGTAGGGGATGTGGAGTGAGAACAGC
 881 ATTTAGTGAAGTTGTGCAACGGCCAGGGTTGTGCTTTCTAGCAAATATGCTGTTATGTCCAGAAATTGTGTGTGCAAGAA
 961 AACTAGGCAATGTACTCTTCCGATGTTTGTGTCACACAACACTGATGTGACTTTTATATGCTTTTTCTCAGATCTGGTTT
1041 CTAAGAGTTTTGGGGGGCGGGGCTGTCACCACGTGCAGTATCTCAAGATATTCAGGTGGCCAGAAGAGCTTGTCAGCAAG
1121 AGGAGGACAGAATTCTCCCAGCGTTAACACAAAATCCATGGGCAGTATGATGGCAGGTCCTCTGTTGCAAACTCAGTTCC
1201 AAAGTCACAGGAAGAAAGCAGAAAGTTCAACTTCCAAAGGGTTAGGACTCTCCACTCAATGTCTTAGGTCAGGAGTTGTG
1281 TCTAGGCTGGAAGAGCCAAAGAATATTCCATTTTCCTTTCCTTGTGGTTGAAAACCACAGTCAGTGGAGAGATGTTTGGA
1361 AACCACAGTCAGTGGAGCCTGGGTGGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCATTGTTTTTGTCATGTAGCT
1441 GTTTTAAGAAATCTGGCCCAGGGTGTTTGCAGCTGTGAGAAGTCACTCACACTGGCCACAAGGACGCTGGCTACTGTCTA
1521 TTAAAATTCTGATGTTTCTGTGAAATTCTCAGAGTGTTTAATTGTACTCAATGGTATCATTACAATTTTCTGTAAGAGAA
1601 AATATTACTTATTTATCCTAGTATTCCTAACCTGTCAGAATAATAAATATTGGAACCAAGACATGGTAAACAAAAAAAAA
1681 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgacaaggACGACUu 5'
                   |||||| 
Target 5' aagtgtgaaTGCTGAa 3'
270 - 285 120.00 -11.10
2
miRNA  3' ucgACAAGGACGACuu 5'
             ||  :|||:||  
Target 5' tgaTGCCTCTGTTGct 3'
227 - 242 109.00 -7.30
3
miRNA  3' ucgACAAGGACGACUu 5'
             ||||:||| ||| 
Target 5' tgaTGTTTCTG-TGAa 3'
1530 - 1544 109.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
741892 280 ClinVar
COSN15618911 14 COSMIC
COSN30189759 40 COSMIC
COSN30126890 43 COSMIC
COSN30132511 44 COSMIC
COSN30747806 69 COSMIC
COSN30487606 75 COSMIC
COSN7201514 80 COSMIC
COSN28865289 100 COSMIC
COSN31496394 116 COSMIC
COSN30183440 118 COSMIC
COSN26967065 133 COSMIC
COSN30513092 144 COSMIC
COSN31586429 184 COSMIC
COSN26562792 192 COSMIC
COSN31502368 193 COSMIC
COSN30452592 200 COSMIC
COSN31492358 204 COSMIC
COSN30488978 233 COSMIC
COSN30465509 234 COSMIC
COSN30488971 236 COSMIC
COSM5368435 258 COSMIC
COSM6188794 273 COSMIC
COSM221380 276 COSMIC
COSM5201903 284 COSMIC
COSM3740993 301 COSMIC
COSM8397332 302 COSMIC
COSM3483147 317 COSMIC
COSM9409602 322 COSMIC
COSM7490571 339 COSMIC
COSM903583 353 COSMIC
COSM5491278 361 COSMIC
COSM7549995 364 COSMIC
COSM9406465 367 COSMIC
COSM1183873 372 COSMIC
COSM8175381 379 COSMIC
COSM8515595 383 COSMIC
COSM8707785 399 COSMIC
COSM425254 403 COSMIC
COSM8160273 403 COSMIC
COSM903584 410 COSMIC
COSM8073444 412 COSMIC
COSM7884429 419 COSMIC
COSN30101379 455 COSMIC
COSN28878495 458 COSMIC
COSN30507042 471 COSMIC
COSN30192127 476 COSMIC
COSN30459764 477 COSMIC
COSN31551823 482 COSMIC
COSN31600999 486 COSMIC
COSN30542881 489 COSMIC
COSN30502981 503 COSMIC
COSN30112626 597 COSMIC
COSN30631708 602 COSMIC
COSN30105238 689 COSMIC
COSN32057313 901 COSMIC
COSN23014223 1074 COSMIC
COSN8431967 1203 COSMIC
COSN31577081 1277 COSMIC
COSN31577071 1317 COSMIC
COSN30173750 1445 COSMIC
COSN31538500 1455 COSMIC
COSN31606172 1575 COSMIC
COSN31535100 1670 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1255884922 2 dbSNP
rs755858234 3 dbSNP
rs779111172 15 dbSNP
rs753140735 18 dbSNP
rs183560666 19 dbSNP
rs758923412 23 dbSNP
rs1456874910 27 dbSNP
rs778435451 29 dbSNP
rs1176521931 33 dbSNP
rs747016690 34 dbSNP
rs781389716 35 dbSNP
rs370907615 36 dbSNP
rs770096732 40 dbSNP
rs780448578 41 dbSNP
rs374539070 42 dbSNP
rs201880223 43 dbSNP
rs555908176 44 dbSNP
rs761808787 48 dbSNP
rs766927717 51 dbSNP
rs1229053838 53 dbSNP
rs924742366 57 dbSNP
rs933377505 67 dbSNP
rs1051948035 70 dbSNP
rs910690005 78 dbSNP
rs943604526 93 dbSNP
rs1195626985 94 dbSNP
rs1037999839 101 dbSNP
rs545110478 105 dbSNP
rs952958800 106 dbSNP
rs983875561 107 dbSNP
rs1250030416 116 dbSNP
rs1318997673 123 dbSNP
rs1343348349 129 dbSNP
rs1274865809 131 dbSNP
rs899407377 133 dbSNP
rs11571553 134 dbSNP
rs942379643 141 dbSNP
rs1396531532 144 dbSNP
rs1357331667 150 dbSNP
rs1485178485 151 dbSNP
rs1169801486 161 dbSNP
rs1456592305 168 dbSNP
rs1367965671 174 dbSNP
rs1284246842 177 dbSNP
rs1040722195 181 dbSNP
rs922537105 182 dbSNP
rs935273434 185 dbSNP
rs1250189805 186 dbSNP
rs1182131104 189 dbSNP
rs1483549141 196 dbSNP
rs1052746055 202 dbSNP
rs772814987 203 dbSNP
rs1455056813 204 dbSNP
rs1315816073 208 dbSNP
rs1487339403 209 dbSNP
rs369897861 212 dbSNP
rs553312800 213 dbSNP
rs753051033 215 dbSNP
rs758836964 219 dbSNP
rs1203497289 222 dbSNP
rs372541088 226 dbSNP
rs752098584 236 dbSNP
rs757831153 241 dbSNP
rs1241976857 243 dbSNP
rs781101366 245 dbSNP
rs377098998 247 dbSNP
rs771078775 258 dbSNP
rs780270474 259 dbSNP
rs749018719 262 dbSNP
rs1353190121 268 dbSNP
rs768439148 270 dbSNP
rs1010687118 272 dbSNP
rs751256772 272 dbSNP
rs1319973814 275 dbSNP
rs11571554 280 dbSNP
rs1450492986 284 dbSNP
rs113044456 297 dbSNP
rs967010475 300 dbSNP
rs1294366698 308 dbSNP
rs977466450 310 dbSNP
rs1409856141 313 dbSNP
rs369430772 316 dbSNP
rs1362853658 317 dbSNP
rs1214212371 321 dbSNP
rs1293175478 322 dbSNP
rs1473238884 323 dbSNP
rs1325496631 333 dbSNP
rs772073616 336 dbSNP
rs1365908231 338 dbSNP
rs1286639436 340 dbSNP
rs1226448270 353 dbSNP
rs1032061716 354 dbSNP
rs1262384931 358 dbSNP
rs1459940175 360 dbSNP
rs373831511 361 dbSNP
rs1242195668 370 dbSNP
rs760243251 371 dbSNP
rs765877873 372 dbSNP
rs1417783836 377 dbSNP
rs1001513360 378 dbSNP
rs1177642937 379 dbSNP
rs1265708150 380 dbSNP
rs1035712899 389 dbSNP
rs1405930330 390 dbSNP
rs865981347 393 dbSNP
rs776417028 401 dbSNP
rs1320296781 403 dbSNP
rs954826329 408 dbSNP
rs139028595 411 dbSNP
rs1430265680 412 dbSNP
rs376448976 417 dbSNP
rs1230734695 419 dbSNP
rs764530278 421 dbSNP
rs1223840443 424 dbSNP
rs1330335850 425 dbSNP
rs1282406482 426 dbSNP
rs1321247820 437 dbSNP
rs752011596 441 dbSNP
rs757665110 443 dbSNP
rs1445964504 446 dbSNP
rs369230987 454 dbSNP
rs1270543827 455 dbSNP
rs45627140 457 dbSNP
rs199763352 458 dbSNP
rs35370546 459 dbSNP
rs755246396 460 dbSNP
rs778634504 461 dbSNP
rs747994108 463 dbSNP
rs1458201158 464 dbSNP
rs755315959 464 dbSNP
rs771844032 469 dbSNP
rs759908530 470 dbSNP
rs746983561 471 dbSNP
rs1193809596 473 dbSNP
rs781565869 473 dbSNP
rs770460666 478 dbSNP
rs776329911 479 dbSNP
rs759233397 480 dbSNP
rs372955377 487 dbSNP
rs1245638647 489 dbSNP
rs748585264 489 dbSNP
rs1221526694 490 dbSNP
rs774808398 495 dbSNP
rs1359628691 497 dbSNP
rs943553666 509 dbSNP
rs963773492 511 dbSNP
rs1286212906 514 dbSNP
rs1198668083 515 dbSNP
rs976466672 523 dbSNP
rs189729697 535 dbSNP
rs922298704 543 dbSNP
rs1236765526 544 dbSNP
rs563798634 556 dbSNP
rs1224614565 568 dbSNP
rs1306659199 570 dbSNP
rs748543188 580 dbSNP
rs1052401131 581 dbSNP
rs929516898 585 dbSNP
rs1047398181 595 dbSNP
rs915134517 603 dbSNP
rs1803173 604 dbSNP
rs1235301153 608 dbSNP
rs1387889688 609 dbSNP
rs1167612071 626 dbSNP
rs369246248 629 dbSNP
rs560689526 641 dbSNP
rs1243361568 644 dbSNP
rs144258576 668 dbSNP
rs905011364 680 dbSNP
rs773406514 686 dbSNP
rs937439872 687 dbSNP
rs1057454302 689 dbSNP
rs546216793 694 dbSNP
rs895823089 699 dbSNP
rs994566860 703 dbSNP
rs1215385140 705 dbSNP
rs1010716854 714 dbSNP
rs1022524448 715 dbSNP
rs1447935075 716 dbSNP
rs902441486 717 dbSNP
rs1315390756 724 dbSNP
rs999816759 728 dbSNP
rs1178376622 730 dbSNP
rs1370345395 732 dbSNP
rs1031674757 735 dbSNP
rs192897117 736 dbSNP
rs1421021862 755 dbSNP
rs888681002 756 dbSNP
rs1160993063 762 dbSNP
rs1005749972 763 dbSNP
rs1018464511 769 dbSNP
rs1418425181 771 dbSNP
rs564911164 774 dbSNP
rs964170695 775 dbSNP
rs976538434 776 dbSNP
rs1017733895 784 dbSNP
rs1439841047 786 dbSNP
rs11571555 793 dbSNP
rs1356363311 795 dbSNP
rs1227766678 797 dbSNP
rs531984348 804 dbSNP
rs964773461 806 dbSNP
rs114399691 807 dbSNP
rs956439625 818 dbSNP
rs1299170182 829 dbSNP
rs920724922 835 dbSNP
rs1407113065 838 dbSNP
rs569017884 847 dbSNP
rs763328116 848 dbSNP
rs1323433402 856 dbSNP
rs185363016 857 dbSNP
rs946648714 858 dbSNP
rs190063497 869 dbSNP
rs1204730890 870 dbSNP
rs112815473 871 dbSNP
rs1471054258 887 dbSNP
rs1273426064 889 dbSNP
rs567790660 893 dbSNP
rs1245165343 897 dbSNP
rs894917202 898 dbSNP
rs980632765 900 dbSNP
rs181958495 901 dbSNP
rs1207386821 902 dbSNP
rs1477620770 910 dbSNP
rs553154586 912 dbSNP
rs1308131566 916 dbSNP
rs1225780830 921 dbSNP
rs186332056 928 dbSNP
rs1410630006 930 dbSNP
rs1439723328 937 dbSNP
rs551718083 947 dbSNP
rs1455543898 952 dbSNP
rs1030028740 967 dbSNP
rs891037156 971 dbSNP
rs189370728 982 dbSNP
rs762608203 983 dbSNP
rs11571556 985 dbSNP
rs1304124412 986 dbSNP
rs1017596390 990 dbSNP
rs1464520499 993 dbSNP
rs1434864372 995 dbSNP
rs1218563783 998 dbSNP
rs1310749136 999 dbSNP
rs34985903 1000 dbSNP
rs1278429141 1004 dbSNP
rs575521061 1007 dbSNP
rs995288503 1010 dbSNP
rs1272463453 1012 dbSNP
rs1304957731 1014 dbSNP
rs1432197335 1015 dbSNP
rs1360670611 1016 dbSNP
rs764124140 1018 dbSNP
rs1047490741 1019 dbSNP
rs1432879859 1021 dbSNP
rs1357210307 1022 dbSNP
rs1172825028 1030 dbSNP
rs542860126 1035 dbSNP
rs1363321104 1036 dbSNP
rs1397067794 1036 dbSNP
rs1005823392 1037 dbSNP
rs1262530693 1038 dbSNP
rs1214625203 1044 dbSNP
rs1188786244 1045 dbSNP
rs1482599389 1046 dbSNP
rs1018505494 1049 dbSNP
rs1273360724 1050 dbSNP
rs1212102625 1052 dbSNP
rs1027735507 1053 dbSNP
rs1350528211 1056 dbSNP
rs542948925 1057 dbSNP
rs983625265 1058 dbSNP
rs1126526 1059 dbSNP
rs540344722 1060 dbSNP
rs1216227873 1063 dbSNP
rs564782559 1064 dbSNP
rs1312225167 1073 dbSNP
rs142921239 1074 dbSNP
rs1243741189 1076 dbSNP
rs562850470 1082 dbSNP
rs1306345012 1089 dbSNP
rs1461724413 1095 dbSNP
rs529996513 1102 dbSNP
rs1373711650 1109 dbSNP
rs946471901 1111 dbSNP
rs534262524 1115 dbSNP
rs1043906809 1116 dbSNP
rs548442307 1117 dbSNP
rs967647592 1126 dbSNP
rs566684850 1138 dbSNP
rs1189307101 1142 dbSNP
rs1486826793 1143 dbSNP
rs761592668 1144 dbSNP
rs1193717891 1150 dbSNP
rs1388469401 1159 dbSNP
rs980663719 1160 dbSNP
rs10475 1167 dbSNP
rs1228912112 1168 dbSNP
rs1319438841 1173 dbSNP
rs1164466760 1174 dbSNP
rs1292527185 1176 dbSNP
rs1233835276 1179 dbSNP
rs939237774 1181 dbSNP
rs1365287782 1183 dbSNP
rs891068503 1189 dbSNP
rs1397537938 1196 dbSNP
rs750195304 1205 dbSNP
rs1320748716 1208 dbSNP
rs755929410 1211 dbSNP
rs917367823 1212 dbSNP
rs1393854286 1219 dbSNP
rs763791103 1225 dbSNP
rs758245068 1231 dbSNP
rs780035484 1235 dbSNP
rs547072363 1253 dbSNP
rs1430730036 1254 dbSNP
rs1047116129 1257 dbSNP
rs1296147029 1259 dbSNP
rs1362421119 1260 dbSNP
rs571608933 1261 dbSNP
rs1315343638 1262 dbSNP
rs539062894 1279 dbSNP
rs950811295 1282 dbSNP
rs1226374160 1283 dbSNP
rs1197188642 1290 dbSNP
rs1466704970 1299 dbSNP
rs1005479076 1319 dbSNP
rs1447507451 1327 dbSNP
rs1040020024 1339 dbSNP
rs557073784 1346 dbSNP
rs1208034283 1348 dbSNP
rs1265979665 1353 dbSNP
rs1035121814 1366 dbSNP
rs1246204627 1376 dbSNP
rs569236636 1386 dbSNP
rs1126700 1403 dbSNP
rs1051715967 1406 dbSNP
rs1368093527 1407 dbSNP
rs1326716073 1413 dbSNP
rs1387026707 1416 dbSNP
rs536213208 1417 dbSNP
rs1365925617 1422 dbSNP
rs761172217 1422 dbSNP
rs1183515564 1431 dbSNP
rs1452258311 1442 dbSNP
rs1160653299 1457 dbSNP
rs1251798754 1457 dbSNP
rs1193768164 1459 dbSNP
rs1469434640 1478 dbSNP
rs1009733253 1493 dbSNP
rs180985365 1494 dbSNP
rs755241544 1496 dbSNP
rs573105371 1506 dbSNP
rs1001822459 1507 dbSNP
rs1262343181 1519 dbSNP
rs1232335916 1543 dbSNP
rs1454086060 1546 dbSNP
rs935074053 1550 dbSNP
rs765234065 1551 dbSNP
rs1033579804 1577 dbSNP
rs912357443 1580 dbSNP
rs960893255 1582 dbSNP
rs942505734 1591 dbSNP
rs1351147065 1594 dbSNP
rs992059676 1598 dbSNP
rs748288766 1608 dbSNP
rs540432902 1613 dbSNP
rs1173908699 1621 dbSNP
rs1455142014 1630 dbSNP
rs1239872124 1632 dbSNP
rs1204371959 1635 dbSNP
rs1192381838 1639 dbSNP
rs1255643180 1640 dbSNP
rs995268941 1650 dbSNP
rs1440845458 1651 dbSNP
rs982901724 1655 dbSNP
rs1233765736 1666 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 467.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucgacaaggACGACUu 5'
                   |||||| 
Target 5' aagugugaaUGCUGAa 3'
3 - 18
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000366983.1 | 3UTR | gaaagugugaaugcugaacuga
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-4291 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102445 CALU calumenin 2 4
MIRT108677 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT125969 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT179018 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT379033 CDK6 cyclin dependent kinase 6 2 6
MIRT442473 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT442910 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT442979 ZNF736 zinc finger protein 736 2 2
MIRT445663 TNFSF15 TNF superfamily member 15 2 2
MIRT446237 FZD6 frizzled class receptor 6 2 2
MIRT448860 FAM49B family with sequence similarity 49 member B 2 2
MIRT455559 TRAF1 TNF receptor associated factor 1 2 2
MIRT459704 ZNF641 zinc finger protein 641 2 2
MIRT460608 FEM1A fem-1 homolog A 2 2
MIRT462251 LAMA4 laminin subunit alpha 4 2 2
MIRT462469 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT466656 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 6
MIRT466841 STX6 syntaxin 6 2 2
MIRT471403 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471517 PCGF3 polycomb group ring finger 3 2 2
MIRT471681 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT472858 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT474813 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 2 2
MIRT474931 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475814 HDGF heparin binding growth factor 2 2
MIRT480434 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480903 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT481478 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT484982 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485019 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485036 TMEM189 transmembrane protein 189 2 8
MIRT495074 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT496004 CD180 CD180 molecule 2 2
MIRT500675 TRIM37 tripartite motif containing 37 2 2
MIRT504544 ZNF417 zinc finger protein 417 2 6
MIRT506782 KLHL15 kelch like family member 15 2 6
MIRT507256 FGF2 fibroblast growth factor 2 2 6
MIRT507386 EN2 engrailed homeobox 2 2 2
MIRT512505 BTBD19 BTB domain containing 19 2 2
MIRT516903 CTSB cathepsin B 2 2
MIRT528124 PPP1R10 protein phosphatase 1 regulatory subunit 10 2 2
MIRT528874 ATF3 activating transcription factor 3 2 2
MIRT536091 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT541079 RLIM ring finger protein, LIM domain interacting 2 2
MIRT541099 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT545360 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT545831 ZNF367 zinc finger protein 367 2 4
MIRT547115 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT547312 NPTN neuroplastin 2 2
MIRT547959 HIGD1A HIG1 hypoxia inducible domain family member 1A 2 4
MIRT549943 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT550749 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT565145 TUBB2A tubulin beta 2A class IIa 2 2
MIRT571050 POLQ DNA polymerase theta 2 2
MIRT571361 ZNF45 zinc finger protein 45 2 2
MIRT610133 FOXI2 forkhead box I2 2 2
MIRT613145 DSE dermatan sulfate epimerase 2 2
MIRT613379 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT615752 C6 complement C6 2 2
MIRT616460 ADRA2B adrenoceptor alpha 2B 2 2
MIRT616719 FEM1B fem-1 homolog B 2 2
MIRT618312 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT631491 RASSF4 Ras association domain family member 4 2 2
MIRT643134 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT643482 DISC1 disrupted in schizophrenia 1 2 2
MIRT649715 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT653542 SLC38A7 solute carrier family 38 member 7 2 2
MIRT666307 SLC22A3 solute carrier family 22 member 3 2 2
MIRT692005 NAP1L4 nucleosome assembly protein 1 like 4 2 2
MIRT696838 ARL2BP ADP ribosylation factor like GTPase 2 binding protein 2 2
MIRT698204 TMEM248 transmembrane protein 248 2 2
MIRT703316 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT709376 FAM13A family with sequence similarity 13 member A 2 2
MIRT710112 MED23 mediator complex subunit 23 2 2
MIRT711975 HOMER2 homer scaffolding protein 2 2 2
MIRT712275 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT714108 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT719113 MAML1 mastermind like transcriptional coactivator 1 2 2
MIRT719727 SLC39A11 solute carrier family 39 member 11 2 2
MIRT720018 TFAP2C transcription factor AP-2 gamma 2 2
MIRT720358 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT720372 NUDT3 nudix hydrolase 3 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4291 Platinum-based doublet chemotherapy resistant High Lung Adenocarcinoma tissue
hsa-miR-4291 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-4291 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-4291 Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-4291 Radioactivity Iodine resistant High Papillary Thyroid Cancer tissue
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4291 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4291 Platinum-based doublet chemotherapy resistant tissue (lung adenocarcinoma)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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