pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ATRNL1   
Synonyms ALP, bA338L11.1, bA454H24.1
Description attractin like 1
Transcript NM_207303   
Expression
Putative miRNA Targets on ATRNL1
3'UTR of ATRNL1
(miRNA target sites are highlighted)
>ATRNL1|NM_207303|3'UTR
   1 GAAATGGAAACCGCTCCTGTATATTCTGTACTGTTTTACTTCGGGCTTCTGTTAAAGCTGTTCTATGGCCTTGGATTTTA
  81 TGGAGGCAGATCTCTGTATCATCCAGAGCCTGAGTACAGTTTCCTTCCAAATGGACAATGACCCAGGTGGCCAAAGAATG
 161 TTCATGAGTTTTATAAAAGTATTGATGGTCACAGGTGATAAAGTCAGTTTTTACCACTATCTTAGGCTTATTATAGCTAA
 241 CATTAAATTACTCTGGAAAAAGATGTATATTGTTTCTTAATGAAGATGAAAAATATGTAATTCATATAAATCAACTGTTT
 321 ATATCCCAAGACTTGAAAGAAAGACATTTTTTAATGCCTGAATGATGAGAATTGTACAGTTTTTGCCTCATAAGCAAACT
 401 TGAATCACCTGTGTATGAACAGGGAATGAACACATTGCAATGGCTTTAAATGCTCTTTTATCTCGTTGTAAAGGTAAGGC
 481 AAGATTTTGATGTAGTAGGATGTAGGTAATGTATTTAAATATTTCATATGACCATATCGTGTCCAAACTCAGTCTGAGAA
 561 TGTGACAGCTTTCCGCCTAACTAGAATGCAGACCAGAATGAGTTCAACTCATTCTGTGCAACTTCACAGGGGGTTTATTA
 641 GAATGCTCAGTGTAGAGGACATTCCTGTCATCCATGCCAACTACCTAACTCGTTATCAGAGCTGATAGAGCATGGAAAAG
 721 TCTGTCCAGCGATCAGTTGTTCCCCTCCTTCCAAAAACAGCCTCCAATACCACAACCTGAAAAGAGCCGAAATGGTTATT
 801 TTACAGCATACAAGCTTCTGCTCCAGTATGATAATTTTTAATTGCCTAAGAATCATTGGATCAGACCTAAATGATCCATC
 881 TGCATTTTTATAAGAATGGATCTTTCTTTGCCCTTCCTCTCCTAGCTGCTAGATTTTAACTACCTTTTACAAATGTTACA
 961 AAATGTATTTTAGAGGCGACATCTCTCAAGATGACCTGAGTTCCTTCCTGCCAACTGTTCCACCTAGAATACAAGTAGAG
1041 AAGAGCACTGGCTGGCAAGCATCAACAGGAGTCTTCTTCCCAACACGAGCGCATCCATGTCCTGAGAAAAAGTCTGTGGT
1121 TTAGAAAATATGTCCATGGTTGCCCACAGTCAGCACACTCTTAGTGACTCAAAATTCTGAATTATGGCAGAAAGGAAAAA
1201 TAAAACATACTTCACATTAGAACACAGAATCATTTACATCCTAATACTGACCACAGTTCACTAAAGCTCAGTAGCATTAA
1281 CAGATATAGTTTGGAATTGCAGTTTCCTCACTTCAGGGTGACAAGATATGTATAACAGTGACAGAAATCTCCAAAGCTGC
1361 TGTATATGATATAGCTTTGTTAAATATGAAGGTCCTTTAAATACAATTGATGTTTAGTACTATATATGTACTTTTCACAT
1441 TCTTTGGATTTCTGGAAGGTTATGACACTTTACTGTTTACAGCTAATGCATAGTTACTTGCATGCCATGGTTGTACAGTA
1521 GCAGACTATGACCCTATTGTGATATTAAGTGTTTATTTCATAATGCCATTTATACATAGCTGAATTTGATGAGGATTGAA
1601 TGTCATATATAAGAGGAATGATCATACAATATGTAGTTGCATCTTATATAAGATTTCTAGGTTGCATCTAACCATGACTA
1681 TGTCATTATTTTGATAATTAGGCATTTATGAATTATAGTATATATTCCTCATGTTGGCATGATAATTTTGCTATTTTCCA
1761 TGCATTAAAAATAAGACAAATTCTTAGAGTAATTTTAGTAATTTTATCTATAATCTGTGGGGTTTTTTTGGAGGGGGAGG
1841 CCACTGGTTGTTTCTACTTCCCTGTGATATTTTCTCTCTCATTAAAGGAATGAGCTAAGTTTGTAAATATCTCCTAAAAA
1921 CAATCAAGTAATTTTATTAGCTTCTTTTGGACCCTCTAAATATTGACTTCTCTCATGAAAAAATAAATTGATGAAACTAA
2001 TGATTACAAAGATATAATCATTTTTTAAAAAGTGATTGCCCAATGTATTTCTCTAACAATTGTCACAAGAGAAAGCATAA
2081 CAATAAAAATACAAAAACATACAGATTTAGATGTAAAATCTATATAAGCTATATTTTTAGGGAGGCTAAGCAGATAGTAT
2161 TACTGTGGAAGAATTATCAAGTTTTATTCACCTCAAATCCCACTGGGTTCTTAAAACTTGAAAATTCAAATTGTAGAGAA
2241 TTATGAGACACAATGTGATGTTTAGTTAAAGTCATGCTATACCTTTCTGGGCCACATATTGCTAACTCTGTGGCTAATTA
2321 TGCAATTAATTCTCAACGTATCAAAGCTTTTCACTGGCAGTAAATTCTTTGCCCTCAGGTGAAGTGGATTGAAAAGACAT
2401 CAAGGATCAAGGATAATCACTTTGAATCTGTTGGTTTTTCCCCCTACATTCCAGACACTTTAAATTTGGATGCTTTCATT
2481 TTTTTTAAATCAAACCACACAAATATGCAGATACTTTCCCAGAATTTCGCAGTTAAATGGCTGATCCTCTTGAAAACTAA
2561 CCTTAATGGAATTCTAAACATTTCAGTTTAGAATGACTTTGAAAAATTCCTTAGATTTTTAGGATGTTTTATTCTGCCAA
2641 GTATGAAAAAAAAATGGTTAAATACAATGGAGTTTTAAAAATTAACCTGGGGATTCTATTTGAACTAGAAAATTCCTATT
2721 GGAAAAGAATTTGCACATACTTACAGATTCAGCTAATAAATTTTAAGAGGATTAGGATTCTCATAATTCTTTAAATGAAA
2801 ATTTGTTTTAGTGATACACAGAGATGCCGTATACTATAGTGTTATGTTCAGTAGGAAAACTTCAAATAGTTCGTATTTAA
2881 AAAGGTAATTGATCCTTGCTGTACTTCCCAACATCTCATCTTCTTTTAGCTGCAGTAAGATAGAGGTGACTGTATGGCTA
2961 CAGTTCATGGTATAAGGTCATTTAGGGTGCACACTGGCACACAGGCTGGAAAACGGGCACTGGACCCAGCTTTCAGGTGT
3041 GTGGTGCTGGGTAAGTTTCACCTTTGAAGCCTCAGCCTTCCATCTGTAAAGGGCGGTAATGGTGCCCACCTTTCGAGGCA
3121 TTGCGAGGCTAGATGGTAACACACAGAAAGCTCCCACAGTGGGACCTTGATGCAGCGTAGCTGGTATTAACAACCGTGGG
3201 GACACCAGGCCACTCTTTTTCTACCAGTTGTTTTATGAATCCACCTATTAATTTTCATCCATCTTTTGGTCGTAGGTAAA
3281 GGTCAATCAGGTTTTTCAAAAAGACTCCCTGAATAACTTAAGTTCCTGTATTTCTAAGATATAGGGATTTCTACAAAACG
3361 ACTTTGACATTTAGTCAATAAAGACTTAAACTCTTCTTAAATCTATAGTTTTAGGAGAGTTTTTCTTAAAATTACTGACT
3441 GATGACATTGAGACAAGAGCATCAATGATCACCTTTCACGTACAAACTAGGCAAGACAGGGTCAGTGCTTACATTTTGTG
3521 GTTATACATGATACATCTTTTCTCAGTGAACATAAAACTATGATTTGAAAGGTGTCTTATATTTAAAAAAGATTGTAAAA
3601 TGAAAACTGACCAAATGAACTAATTCTACCCACCTATGGTCTTTTTAAATGTCGAGTTTCAAAACCCATTTGCCGTATAC
3681 TAGAGTGAGCTTGGAAACTTACCTGATTACAGGAATTGCTTGGGTTCAGGCAGATTCCCACTTTCACCTCTAGAGATTTA
3761 GATTCAGAAACACTGGGGTAGGCCCTGGAGAGCAGTACTCTTAACAAGCTCCTCAGTGCTTCTTACCATTAGGCAAATTA
3841 GGGAAACACTGCATTGGGTCAAAGTGCTGCCTTTAATCGACCATTAGAGGGAGTTCTCTAAATAACAAAGTTATTACTCT
3921 AATTCAAAATGCTTTAAAGAATTTTCCAAGGAATACAAGCCATCTGGTTGGTGTTAGTTATAGCAGTGATTTCATTAGAG
4001 TGTACATTTAACATTTTAGTTTTATCAAAATTTTTTGAAATTAAGAATTAGAACCAGAGCTCCTATCAGTATATATGTAC
4081 ACAGGTGTGCATGCCAGTGTTCAAAAGATTGTGTAAAAGTTCAAGCCCGTTTTAGAAAGCCAACATTTTATGTTATAATA
4161 TGCTGTTAATCAGGACTTTATTAAATAAAAACATTGGCTCTTCCAACCCCCACTGCCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACG-UUUAAAAu 5'
            || | ||| |:||||| 
Target 5' tcCTAGCTGCTAGATTTTa 3'
920 - 938 140.00 -9.90
2
miRNA  3' aggACCUAC------GUUUAAAAu 5'
             |||| |      |||:|||| 
Target 5' ctgTGGAAGAATTATCAAGTTTTa 3'
2163 - 2186 133.00 -6.70
3
miRNA  3' aggaccUACG-UUUAAAAu 5'
                | || |:||||| 
Target 5' aaggtaAGGCAAGATTTTg 3'
471 - 489 128.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30497088 11 COSMIC
COSN507071 13 COSMIC
COSN30193842 14 COSMIC
COSN30516759 15 COSMIC
COSN30518849 22 COSMIC
COSN31508399 22 COSMIC
COSN26967422 27 COSMIC
COSN30666296 29 COSMIC
COSN6057822 34 COSMIC
COSN31547222 42 COSMIC
COSN31525462 43 COSMIC
COSN30525503 44 COSMIC
COSN31495351 47 COSMIC
COSN31507747 59 COSMIC
COSN30183553 72 COSMIC
COSN30183589 79 COSMIC
COSN30517306 101 COSMIC
COSN24312143 110 COSMIC
COSN30484836 111 COSMIC
COSN6942278 142 COSMIC
COSN31583698 157 COSMIC
COSN28035747 343 COSMIC
COSN25934740 482 COSMIC
COSN15485774 508 COSMIC
COSN1472580 517 COSMIC
COSN1472581 741 COSMIC
COSN21909018 1333 COSMIC
COSN6942279 1408 COSMIC
COSN15047966 1685 COSMIC
COSN16184449 1822 COSMIC
COSN6942280 1832 COSMIC
COSN21315410 1853 COSMIC
COSN15668295 1889 COSMIC
COSN28201246 1896 COSMIC
COSN16666487 1935 COSMIC
COSN4711606 2032 COSMIC
COSN15668294 2111 COSMIC
COSN31579128 2164 COSMIC
COSN8639092 2231 COSMIC
COSN28779380 2275 COSMIC
COSN8149797 2338 COSMIC
COSN31568858 2368 COSMIC
COSN6942281 2530 COSMIC
COSN31482306 2609 COSMIC
COSN6942282 2643 COSMIC
COSN1112898 2646 COSMIC
COSN15479431 2687 COSMIC
COSN31528805 2810 COSMIC
COSN23448258 2885 COSMIC
COSN5278747 2888 COSMIC
COSN25257041 3269 COSMIC
COSN24095311 3452 COSMIC
COSN17507569 3518 COSMIC
COSN22686718 3568 COSMIC
COSN25111177 3586 COSMIC
COSN28198185 3732 COSMIC
COSN16140349 3881 COSMIC
COSN25616233 3943 COSMIC
COSN25457041 4043 COSMIC
COSN28196245 4053 COSMIC
COSN20107606 4107 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1406106084 9 dbSNP
rs367623048 12 dbSNP
rs372384405 13 dbSNP
rs187336851 14 dbSNP
rs953491887 16 dbSNP
rs782644355 20 dbSNP
rs1187448871 22 dbSNP
rs782173014 23 dbSNP
rs782325184 24 dbSNP
rs915051910 30 dbSNP
rs1221890449 32 dbSNP
rs1320687356 34 dbSNP
rs782505841 34 dbSNP
rs781975714 38 dbSNP
rs377221361 43 dbSNP
rs782394268 44 dbSNP
rs782021007 50 dbSNP
rs782169136 52 dbSNP
rs1432740877 66 dbSNP
rs557934368 69 dbSNP
rs207471467 70 dbSNP
rs1363128144 82 dbSNP
rs1295327016 88 dbSNP
rs1437485794 92 dbSNP
rs967855354 94 dbSNP
rs1163172482 95 dbSNP
rs191624567 95 dbSNP
rs1432013366 117 dbSNP
rs141468910 127 dbSNP
rs1168513173 137 dbSNP
rs1448161152 138 dbSNP
rs923911932 139 dbSNP
rs1268867807 143 dbSNP
rs1191241991 150 dbSNP
rs1487974542 163 dbSNP
rs1244614631 165 dbSNP
rs939015259 170 dbSNP
rs1056159489 176 dbSNP
rs1483269771 189 dbSNP
rs916322723 193 dbSNP
rs868916778 196 dbSNP
rs947758844 197 dbSNP
rs369793922 198 dbSNP
rs1226135429 215 dbSNP
rs1048862112 219 dbSNP
rs556511030 222 dbSNP
rs887907487 229 dbSNP
rs1367252924 230 dbSNP
rs577917491 247 dbSNP
rs1291989503 251 dbSNP
rs1411824724 254 dbSNP
rs1371592111 261 dbSNP
rs1307756695 264 dbSNP
rs77583199 268 dbSNP
rs1379842142 273 dbSNP
rs1037014549 276 dbSNP
rs902115911 283 dbSNP
rs1422379622 289 dbSNP
rs1432075744 289 dbSNP
rs80112669 296 dbSNP
rs1028965024 297 dbSNP
rs184558277 309 dbSNP
rs1250834743 312 dbSNP
rs547981546 324 dbSNP
rs1484217934 327 dbSNP
rs1256513399 329 dbSNP
rs963192 336 dbSNP
rs1311683234 340 dbSNP
rs1281408058 348 dbSNP
rs1230487426 353 dbSNP
rs1351315566 355 dbSNP
rs1288159982 358 dbSNP
rs1390022160 360 dbSNP
rs1405052684 363 dbSNP
rs1303945063 374 dbSNP
rs967845283 375 dbSNP
rs1465924300 376 dbSNP
rs1356964280 383 dbSNP
rs1160683191 386 dbSNP
rs1472744694 409 dbSNP
rs531429588 410 dbSNP
rs549571976 411 dbSNP
rs1179833031 415 dbSNP
rs1425323586 416 dbSNP
rs923838614 420 dbSNP
rs1181240545 421 dbSNP
rs960687500 424 dbSNP
rs782578937 432 dbSNP
rs552289883 438 dbSNP
rs1261393818 442 dbSNP
rs1210631486 444 dbSNP
rs571320800 445 dbSNP
rs150129063 449 dbSNP
rs1237078429 451 dbSNP
rs1267724898 451 dbSNP
rs916227923 452 dbSNP
rs782415187 453 dbSNP
rs1395984941 462 dbSNP
rs1381204824 465 dbSNP
rs138598005 466 dbSNP
rs189843166 470 dbSNP
rs1387530999 486 dbSNP
rs1156526076 489 dbSNP
rs908997170 495 dbSNP
rs940852644 504 dbSNP
rs782652198 508 dbSNP
rs73365779 520 dbSNP
rs1422026370 527 dbSNP
rs1249806864 539 dbSNP
rs538559593 540 dbSNP
rs1465408996 544 dbSNP
rs1247421006 547 dbSNP
rs1203645694 551 dbSNP
rs1358681403 552 dbSNP
rs371293809 563 dbSNP
rs1266456860 564 dbSNP
rs1244484122 565 dbSNP
rs1358009739 575 dbSNP
rs547270880 576 dbSNP
rs565566242 577 dbSNP
rs1388200173 590 dbSNP
rs1390964007 591 dbSNP
rs555537046 600 dbSNP
rs527841156 606 dbSNP
rs889080290 612 dbSNP
rs1162499542 617 dbSNP
rs538441800 619 dbSNP
rs1422496080 620 dbSNP
rs1391720414 629 dbSNP
rs1011565270 632 dbSNP
rs1021658859 633 dbSNP
rs1389660287 634 dbSNP
rs1191090176 644 dbSNP
rs193272947 649 dbSNP
rs903302452 651 dbSNP
rs1268314024 654 dbSNP
rs1209681077 655 dbSNP
rs578059882 666 dbSNP
rs1277134317 670 dbSNP
rs1229814937 673 dbSNP
rs1342045326 674 dbSNP
rs1267939897 677 dbSNP
rs1234775955 678 dbSNP
rs1331383069 690 dbSNP
rs1322485508 692 dbSNP
rs545406548 696 dbSNP
rs1402639828 703 dbSNP
rs1372209647 705 dbSNP
rs1030806559 709 dbSNP
rs1429088036 731 dbSNP
rs1417264703 732 dbSNP
rs554238006 741 dbSNP
rs992051604 743 dbSNP
rs1479041175 744 dbSNP
rs1378217819 748 dbSNP
rs1198973231 750 dbSNP
rs185657849 761 dbSNP
rs1254475792 780 dbSNP
rs542986418 789 dbSNP
rs1483053624 790 dbSNP
rs1271481906 793 dbSNP
rs782329317 805 dbSNP
rs908948267 807 dbSNP
rs940423419 811 dbSNP
rs781921607 812 dbSNP
rs1221330655 814 dbSNP
rs1351929014 828 dbSNP
rs561249433 832 dbSNP
rs923423488 842 dbSNP
rs531361337 843 dbSNP
rs1408989505 846 dbSNP
rs1352750974 847 dbSNP
rs1336106560 853 dbSNP
rs3740571 857 dbSNP
rs564790944 859 dbSNP
rs782810702 860 dbSNP
rs1050627642 864 dbSNP
rs1403043560 865 dbSNP
rs1468470632 867 dbSNP
rs889403266 872 dbSNP
rs1183426415 883 dbSNP
rs1469955987 884 dbSNP
rs1190258403 887 dbSNP
rs377521412 889 dbSNP
rs74160727 890 dbSNP
rs782004043 903 dbSNP
rs1201201275 926 dbSNP
rs782119119 944 dbSNP
rs903197373 945 dbSNP
rs1268359665 953 dbSNP
rs1227336314 960 dbSNP
rs998928835 960 dbSNP
rs1370915562 966 dbSNP
rs1285693751 967 dbSNP
rs1448699735 969 dbSNP
rs1036187408 978 dbSNP
rs1336236199 979 dbSNP
rs1468287020 992 dbSNP
rs1390853552 1004 dbSNP
rs896287844 1021 dbSNP
rs1400297118 1028 dbSNP
rs1406265366 1039 dbSNP
rs782743838 1052 dbSNP
rs1473436446 1056 dbSNP
rs1243068936 1059 dbSNP
rs1181281048 1061 dbSNP
rs546678028 1066 dbSNP
rs1248038256 1080 dbSNP
rs1214675536 1085 dbSNP
rs376203919 1087 dbSNP
rs1228667217 1088 dbSNP
rs1355622102 1090 dbSNP
rs969318176 1091 dbSNP
rs781833570 1092 dbSNP
rs782427582 1094 dbSNP
rs1430337385 1099 dbSNP
rs1343625839 1112 dbSNP
rs1326026125 1120 dbSNP
rs757997223 1128 dbSNP
rs537104770 1132 dbSNP
rs1162232753 1138 dbSNP
rs1451841494 1144 dbSNP
rs1390280337 1149 dbSNP
rs1185411839 1152 dbSNP
rs782805332 1157 dbSNP
rs1248076559 1165 dbSNP
rs984719066 1178 dbSNP
rs1490125223 1179 dbSNP
rs781886887 1188 dbSNP
rs1230548998 1202 dbSNP
rs1342756070 1209 dbSNP
rs1015913532 1211 dbSNP
rs149316412 1220 dbSNP
rs1214060471 1224 dbSNP
rs779589038 1227 dbSNP
rs10490989 1233 dbSNP
rs923045748 1242 dbSNP
rs954896482 1245 dbSNP
rs782639493 1253 dbSNP
rs1365382669 1256 dbSNP
rs782224338 1259 dbSNP
rs549224442 1260 dbSNP
rs986282830 1264 dbSNP
rs1432227873 1267 dbSNP
rs1371707260 1271 dbSNP
rs1169202501 1288 dbSNP
rs1426228856 1289 dbSNP
rs1426573542 1292 dbSNP
rs1191444417 1293 dbSNP
rs1479877540 1294 dbSNP
rs910793830 1300 dbSNP
rs1206992005 1301 dbSNP
rs947613347 1306 dbSNP
rs1483381241 1308 dbSNP
rs1250679430 1319 dbSNP
rs746492587 1322 dbSNP
rs1305841784 1326 dbSNP
rs1043309951 1327 dbSNP
rs924597002 1329 dbSNP
rs1224381940 1330 dbSNP
rs1345099805 1336 dbSNP
rs576901008 1346 dbSNP
rs1412046172 1347 dbSNP
rs1351421613 1349 dbSNP
rs934666955 1387 dbSNP
rs1057210580 1395 dbSNP
rs1360411928 1405 dbSNP
rs1176128890 1407 dbSNP
rs1469003997 1418 dbSNP
rs1426767047 1427 dbSNP
rs1184150049 1433 dbSNP
rs1472804392 1441 dbSNP
rs1249475555 1449 dbSNP
rs1175447289 1460 dbSNP
rs1484168667 1466 dbSNP
rs371851688 1472 dbSNP
rs782481520 1475 dbSNP
rs368854797 1476 dbSNP
rs1323165248 1485 dbSNP
rs1261507368 1487 dbSNP
rs1230387519 1496 dbSNP
rs1317926236 1508 dbSNP
rs1306676515 1544 dbSNP
rs1390216487 1546 dbSNP
rs1044891278 1548 dbSNP
rs905046094 1549 dbSNP
rs1451265071 1559 dbSNP
rs190605905 1561 dbSNP
rs782576852 1566 dbSNP
rs1016196881 1569 dbSNP
rs961727156 1570 dbSNP
rs111374743 1575 dbSNP
rs550384282 1576 dbSNP
rs1156647671 1580 dbSNP
rs1425532806 1581 dbSNP
rs1030061924 1598 dbSNP
rs1256776021 1600 dbSNP
rs571629684 1603 dbSNP
rs147425189 1605 dbSNP
rs1460930176 1608 dbSNP
rs985858832 1610 dbSNP
rs1241307915 1615 dbSNP
rs554201397 1624 dbSNP
rs1351644414 1627 dbSNP
rs1260545703 1633 dbSNP
rs910699097 1634 dbSNP
rs1324088858 1637 dbSNP
rs1316370956 1646 dbSNP
rs8416 1649 dbSNP
rs1379982609 1667 dbSNP
rs1321917670 1673 dbSNP
rs782023839 1675 dbSNP
rs1382487024 1678 dbSNP
rs1383757094 1685 dbSNP
rs1286973470 1688 dbSNP
rs12243048 1694 dbSNP
rs1368757526 1695 dbSNP
rs541780549 1703 dbSNP
rs1442645756 1714 dbSNP
rs553684624 1714 dbSNP
rs1383520223 1721 dbSNP
rs1190558985 1730 dbSNP
rs1447864706 1732 dbSNP
rs1261278987 1739 dbSNP
rs371403488 1746 dbSNP
rs1203556942 1747 dbSNP
rs1489675295 1754 dbSNP
rs782269214 1759 dbSNP
rs1222431770 1760 dbSNP
rs575135577 1761 dbSNP
rs1227515413 1767 dbSNP
rs1299229830 1767 dbSNP
rs1325552535 1768 dbSNP
rs1292998445 1776 dbSNP
rs1388107521 1778 dbSNP
rs1302275796 1779 dbSNP
rs868954291 1784 dbSNP
rs1169783885 1788 dbSNP
rs1372325165 1788 dbSNP
rs748542805 1811 dbSNP
rs554541418 1816 dbSNP
rs868936784 1819 dbSNP
rs948759086 1824 dbSNP
rs1435079493 1828 dbSNP
rs1270116784 1840 dbSNP
rs1222181029 1845 dbSNP
rs1044501661 1848 dbSNP
rs576298242 1851 dbSNP
rs1196816965 1858 dbSNP
rs1338213866 1860 dbSNP
rs1006091705 1861 dbSNP
rs1249058140 1865 dbSNP
rs1235018078 1871 dbSNP
rs1345716055 1896 dbSNP
rs1282473219 1899 dbSNP
rs1402855361 1930 dbSNP
rs1352036576 1932 dbSNP
rs1329461916 1939 dbSNP
rs1037619585 1946 dbSNP
rs543235320 1955 dbSNP
rs1395891959 1958 dbSNP
rs879998377 1969 dbSNP
rs897758355 1971 dbSNP
rs1166208739 1978 dbSNP
rs1471104176 1988 dbSNP
rs1430244401 1989 dbSNP
rs1199224091 1991 dbSNP
rs1479671131 2003 dbSNP
rs1183188360 2009 dbSNP
rs1437731405 2012 dbSNP
rs993162673 2019 dbSNP
rs1201669051 2027 dbSNP
rs1030384001 2028 dbSNP
rs1262133770 2044 dbSNP
rs1330989713 2045 dbSNP
rs1279870855 2052 dbSNP
rs954399030 2082 dbSNP
rs1441451693 2093 dbSNP
rs181077614 2095 dbSNP
rs781976768 2101 dbSNP
rs1327014035 2111 dbSNP
rs1454637093 2113 dbSNP
rs1176013930 2115 dbSNP
rs1406849972 2115 dbSNP
rs576526871 2123 dbSNP
rs184903478 2125 dbSNP
rs1468382177 2127 dbSNP
rs1410678370 2129 dbSNP
rs1159474779 2141 dbSNP
rs1017317876 2143 dbSNP
rs1470132128 2144 dbSNP
rs968851738 2149 dbSNP
rs372146879 2152 dbSNP
rs879984324 2154 dbSNP
rs1031905299 2155 dbSNP
rs1461381073 2156 dbSNP
rs956518933 2167 dbSNP
rs1201414085 2170 dbSNP
rs993113254 2171 dbSNP
rs559031873 2187 dbSNP
rs1284743750 2193 dbSNP
rs1222996635 2201 dbSNP
rs917198267 2208 dbSNP
rs1348532062 2225 dbSNP
rs948707403 2230 dbSNP
rs1246543078 2239 dbSNP
rs529595775 2255 dbSNP
rs1336134191 2256 dbSNP
rs910005718 2261 dbSNP
rs941823865 2269 dbSNP
rs1450770918 2276 dbSNP
rs548184099 2282 dbSNP
rs897669396 2284 dbSNP
rs1400503291 2288 dbSNP
rs1406155704 2289 dbSNP
rs188593429 2292 dbSNP
rs35963751 2294 dbSNP
rs1445714817 2295 dbSNP
rs1051690847 2319 dbSNP
rs532061627 2326 dbSNP
rs1007216396 2336 dbSNP
rs550104477 2337 dbSNP
rs1214566126 2338 dbSNP
rs904305748 2338 dbSNP
rs1293606366 2339 dbSNP
rs1223193827 2340 dbSNP
rs1358602983 2342 dbSNP
rs1314534510 2343 dbSNP
rs1243854829 2345 dbSNP
rs1364096713 2346 dbSNP
rs1270994478 2348 dbSNP
rs1430228092 2353 dbSNP
rs1343825543 2357 dbSNP
rs1305317860 2360 dbSNP
rs1425895069 2361 dbSNP
rs1365503777 2362 dbSNP
rs1161196019 2365 dbSNP
rs1429792180 2368 dbSNP
rs1000356125 2374 dbSNP
rs1185607656 2390 dbSNP
rs1474207412 2392 dbSNP
rs1032228198 2402 dbSNP
rs1199872548 2412 dbSNP
rs770195090 2415 dbSNP
rs571912234 2419 dbSNP
rs773676016 2431 dbSNP
rs574714799 2432 dbSNP
rs139801587 2434 dbSNP
rs1360096035 2435 dbSNP
rs566201978 2435 dbSNP
rs782698896 2439 dbSNP
rs532726302 2440 dbSNP
rs909953917 2440 dbSNP
rs941394874 2448 dbSNP
rs972858491 2451 dbSNP
rs1463947268 2452 dbSNP
rs1354656253 2473 dbSNP
rs1169092449 2479 dbSNP
rs1407924003 2479 dbSNP
rs919048669 2485 dbSNP
rs1176630647 2487 dbSNP
rs1479989183 2487 dbSNP
rs929164592 2488 dbSNP
rs1266457237 2495 dbSNP
rs181075685 2500 dbSNP
rs1480905860 2507 dbSNP
rs554980455 2511 dbSNP
rs782029156 2514 dbSNP
rs1203910322 2517 dbSNP
rs782145819 2529 dbSNP
rs185953077 2530 dbSNP
rs1323319977 2532 dbSNP
rs17093832 2533 dbSNP
rs191704604 2536 dbSNP
rs1374680523 2538 dbSNP
rs1297159138 2542 dbSNP
rs1000313765 2543 dbSNP
rs1031427614 2551 dbSNP
rs558462962 2552 dbSNP
rs1337016211 2562 dbSNP
rs1468921760 2569 dbSNP
rs546242493 2575 dbSNP
rs891949488 2592 dbSNP
rs183604636 2595 dbSNP
rs564355404 2600 dbSNP
rs1014463163 2612 dbSNP
rs782495121 2613 dbSNP
rs1407148845 2623 dbSNP
rs1175353631 2632 dbSNP
rs1456506192 2635 dbSNP
rs1024542863 2637 dbSNP
rs528446023 2641 dbSNP
rs1241603645 2646 dbSNP
rs1254690644 2646 dbSNP
rs1461011471 2646 dbSNP
rs1317834252 2649 dbSNP
rs1306918649 2653 dbSNP
rs1238557656 2654 dbSNP
rs1384391525 2657 dbSNP
rs547334019 2668 dbSNP
rs576587921 2669 dbSNP
rs962747458 2670 dbSNP
rs973196745 2673 dbSNP
rs1290475563 2687 dbSNP
rs1344318312 2696 dbSNP
rs1156878942 2697 dbSNP
rs1446321863 2699 dbSNP
rs187379194 2705 dbSNP
rs1184277893 2706 dbSNP
rs1444295256 2713 dbSNP
rs782307104 2719 dbSNP
rs987346781 2726 dbSNP
rs1486414515 2734 dbSNP
rs1260453695 2735 dbSNP
rs1215146863 2736 dbSNP
rs911797795 2737 dbSNP
rs1244585018 2754 dbSNP
rs1338134537 2761 dbSNP
rs1297284728 2773 dbSNP
rs1382400508 2775 dbSNP
rs1361045267 2776 dbSNP
rs1296098025 2783 dbSNP
rs774616119 2802 dbSNP
rs1426541756 2806 dbSNP
rs1366096487 2809 dbSNP
rs76478233 2825 dbSNP
rs1038946457 2826 dbSNP
rs1366752174 2828 dbSNP
rs574228357 2829 dbSNP
rs541440023 2830 dbSNP
rs935714986 2836 dbSNP
rs563343433 2837 dbSNP
rs1191949602 2840 dbSNP
rs1491000645 2844 dbSNP
rs1293158498 2846 dbSNP
rs1053277169 2847 dbSNP
rs1353686933 2850 dbSNP
rs891566723 2852 dbSNP
rs781802933 2855 dbSNP
rs1325459327 2858 dbSNP
rs531903453 2873 dbSNP
rs550410933 2874 dbSNP
rs759659188 2876 dbSNP
rs565582819 2880 dbSNP
rs1001746410 2884 dbSNP
rs1345830870 2894 dbSNP
rs1302503424 2895 dbSNP
rs1384955830 2896 dbSNP
rs532727289 2902 dbSNP
rs868972943 2904 dbSNP
rs1169692160 2908 dbSNP
rs1462747717 2910 dbSNP
rs1017208657 2912 dbSNP
rs1423167347 2914 dbSNP
rs74409467 2921 dbSNP
rs566160819 2932 dbSNP
rs1270001729 2933 dbSNP
rs571245272 2958 dbSNP
rs1450374892 2960 dbSNP
rs1252103081 2961 dbSNP
rs113323952 2977 dbSNP
rs11197480 2986 dbSNP
rs1338105718 2987 dbSNP
rs1255760911 2988 dbSNP
rs1224924060 2989 dbSNP
rs147152718 2999 dbSNP
rs1282372161 3003 dbSNP
rs537058480 3015 dbSNP
rs376166778 3016 dbSNP
rs1331040665 3027 dbSNP
rs529897008 3031 dbSNP
rs964521136 3036 dbSNP
rs1329599324 3050 dbSNP
rs1471051943 3071 dbSNP
rs1430493392 3078 dbSNP
rs41284364 3079 dbSNP
rs1477367625 3086 dbSNP
rs782283368 3095 dbSNP
rs935647228 3096 dbSNP
rs1436751518 3097 dbSNP
rs1235773278 3100 dbSNP
rs1205228454 3104 dbSNP
rs1052815217 3111 dbSNP
rs192275014 3115 dbSNP
rs1217252039 3116 dbSNP
rs949805198 3125 dbSNP
rs1280071231 3126 dbSNP
rs782770236 3126 dbSNP
rs1238193807 3134 dbSNP
rs1045509089 3137 dbSNP
rs1307152802 3140 dbSNP
rs905998796 3142 dbSNP
rs1454821341 3143 dbSNP
rs532167097 3145 dbSNP
rs1333683215 3151 dbSNP
rs1038632238 3159 dbSNP
rs1413122413 3163 dbSNP
rs1159674376 3165 dbSNP
rs1387541826 3165 dbSNP
rs75372645 3166 dbSNP
rs1439596718 3168 dbSNP
rs1377990667 3169 dbSNP
rs74365212 3170 dbSNP
rs79642146 3171 dbSNP
rs182306657 3177 dbSNP
rs1207505746 3178 dbSNP
rs1448554284 3182 dbSNP
rs1284637738 3185 dbSNP
rs898773615 3191 dbSNP
rs994563537 3192 dbSNP
rs1204539226 3195 dbSNP
rs1025615741 3196 dbSNP
rs891140194 3197 dbSNP
rs541949783 3201 dbSNP
rs1018347434 3204 dbSNP
rs782237857 3212 dbSNP
rs964511111 3219 dbSNP
rs1446043680 3225 dbSNP
rs1328603878 3226 dbSNP
rs1319367707 3238 dbSNP
rs974571364 3242 dbSNP
rs1033329053 3251 dbSNP
rs1419686241 3271 dbSNP
rs957280348 3272 dbSNP
rs569806166 3273 dbSNP
rs1424760767 3276 dbSNP
rs1179785568 3282 dbSNP
rs556792021 3282 dbSNP
rs1476170996 3283 dbSNP
rs1242535920 3286 dbSNP
rs142120489 3287 dbSNP
rs1487303791 3288 dbSNP
rs1293857836 3290 dbSNP
rs545506264 3292 dbSNP
rs1223075578 3298 dbSNP
rs151292044 3309 dbSNP
rs782348516 3327 dbSNP
rs927068902 3329 dbSNP
rs1289206631 3335 dbSNP
rs781942533 3337 dbSNP
rs532887331 3342 dbSNP
rs115707105 3343 dbSNP
rs560034253 3344 dbSNP
rs1399787150 3354 dbSNP
rs930221731 3360 dbSNP
rs757076535 3361 dbSNP
rs1406046332 3364 dbSNP
rs1047765405 3369 dbSNP
rs374191115 3375 dbSNP
rs1411359923 3379 dbSNP
rs1008221330 3384 dbSNP
rs1169429334 3385 dbSNP
rs781887098 3399 dbSNP
rs1270733253 3435 dbSNP
rs1200113865 3436 dbSNP
rs10885833 3444 dbSNP
rs899955873 3452 dbSNP
rs1219460103 3455 dbSNP
rs1439569399 3457 dbSNP
rs1258964483 3459 dbSNP
rs1218197062 3461 dbSNP
rs1000916999 3463 dbSNP
rs548621513 3466 dbSNP
rs957433547 3471 dbSNP
rs988708969 3478 dbSNP
rs570054532 3480 dbSNP
rs367771890 3481 dbSNP
rs1443742039 3487 dbSNP
rs1354552729 3492 dbSNP
rs1330306596 3514 dbSNP
rs1463709121 3525 dbSNP
rs1431229753 3529 dbSNP
rs1176871438 3542 dbSNP
rs1432590205 3549 dbSNP
rs1422980737 3564 dbSNP
rs981130220 3567 dbSNP
rs927018340 3575 dbSNP
rs139371106 3581 dbSNP
rs1198295103 3583 dbSNP
rs552169438 3586 dbSNP
rs1265448507 3591 dbSNP
rs920068801 3594 dbSNP
rs1211254856 3596 dbSNP
rs1311903852 3597 dbSNP
rs930144635 3599 dbSNP
rs548050667 3604 dbSNP
rs370369996 3620 dbSNP
rs1377051324 3624 dbSNP
rs781994158 3633 dbSNP
rs944028813 3635 dbSNP
rs1407842154 3646 dbSNP
rs1336907590 3652 dbSNP
rs1039650888 3654 dbSNP
rs534647099 3655 dbSNP
rs1419568215 3670 dbSNP
rs186634022 3675 dbSNP
rs1178083789 3676 dbSNP
rs1438135268 3683 dbSNP
rs1000864581 3704 dbSNP
rs1483139103 3714 dbSNP
rs782114533 3714 dbSNP
rs1254602581 3721 dbSNP
rs892961540 3725 dbSNP
rs568207813 3736 dbSNP
rs535295980 3739 dbSNP
rs1284773909 3748 dbSNP
rs1020184496 3751 dbSNP
rs1237332654 3756 dbSNP
rs1384291008 3760 dbSNP
rs1313015926 3768 dbSNP
rs1395049416 3769 dbSNP
rs1376751698 3783 dbSNP
rs1290388814 3784 dbSNP
rs556992072 3793 dbSNP
rs1454298265 3794 dbSNP
rs1359817180 3796 dbSNP
rs77139685 3797 dbSNP
rs1417949329 3802 dbSNP
rs1002805316 3806 dbSNP
rs1033992546 3810 dbSNP
rs1387110001 3817 dbSNP
rs146632720 3822 dbSNP
rs1165805210 3823 dbSNP
rs1423444825 3824 dbSNP
rs1254587115 3828 dbSNP
rs1188656516 3833 dbSNP
rs1488784333 3839 dbSNP
rs1263121632 3841 dbSNP
rs550572335 3849 dbSNP
rs1361013972 3850 dbSNP
rs868973957 3855 dbSNP
rs1243674996 3859 dbSNP
rs1319537110 3865 dbSNP
rs1297539529 3870 dbSNP
rs1400385432 3871 dbSNP
rs919709334 3872 dbSNP
rs951560040 3880 dbSNP
rs782357497 3883 dbSNP
rs1393037806 3884 dbSNP
rs1163900671 3892 dbSNP
rs879985260 3893 dbSNP
rs1172732446 3908 dbSNP
rs1478366290 3912 dbSNP
rs1423309900 3921 dbSNP
rs35873567 3942 dbSNP
rs397847545 3942 dbSNP
rs781947216 3945 dbSNP
rs1267506569 3947 dbSNP
rs1208720159 3953 dbSNP
rs1487179556 3961 dbSNP
rs912742834 3962 dbSNP
rs782062493 3965 dbSNP
rs1218805410 3966 dbSNP
rs1317099280 3974 dbSNP
rs1276047823 3975 dbSNP
rs1225341655 3980 dbSNP
rs782706934 3982 dbSNP
rs568841428 3983 dbSNP
rs541784751 3984 dbSNP
rs936700277 3999 dbSNP
rs1388611338 4002 dbSNP
rs1333653907 4003 dbSNP
rs1466310852 4006 dbSNP
rs1400087965 4007 dbSNP
rs1168964746 4012 dbSNP
rs1378722563 4018 dbSNP
rs1198702819 4020 dbSNP
rs1251993948 4024 dbSNP
rs1198924869 4037 dbSNP
rs1457035045 4042 dbSNP
rs1255996739 4048 dbSNP
rs1205338980 4058 dbSNP
rs141473542 4060 dbSNP
rs1274208673 4068 dbSNP
rs1230925157 4074 dbSNP
rs892570778 4076 dbSNP
rs1329459849 4078 dbSNP
rs1311527170 4079 dbSNP
rs1447869438 4083 dbSNP
rs1399827383 4085 dbSNP
rs782147341 4087 dbSNP
rs1329477872 4091 dbSNP
rs1416529200 4098 dbSNP
rs1403293478 4103 dbSNP
rs10648086 4106 dbSNP
rs112809195 4106 dbSNP
rs35153147 4107 dbSNP
rs1381691858 4108 dbSNP
rs1178714588 4109 dbSNP
rs1041546972 4112 dbSNP
rs907053839 4130 dbSNP
rs1442824072 4131 dbSNP
rs144934159 4144 dbSNP
rs1198710983 4148 dbSNP
rs1352734209 4149 dbSNP
rs542079435 4152 dbSNP
rs563769157 4154 dbSNP
rs782781229 4159 dbSNP
rs1307373761 4163 dbSNP
rs1450416060 4166 dbSNP
rs995604088 4173 dbSNP
rs1341482021 4175 dbSNP
rs1026720236 4177 dbSNP
rs1363015461 4187 dbSNP
rs1159723326 4191 dbSNP
rs1418590874 4193 dbSNP
rs1377905520 4200 dbSNP
rs1164676189 4207 dbSNP
rs1472909783 4208 dbSNP
rs1236741138 4209 dbSNP
rs1185135959 4214 dbSNP
rs1489109143 4216 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 26033.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000355044.3 | 3UTR | AUCUAUAAUCUGUGGGGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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