pre-miRNA Information
pre-miRNA hsa-mir-6501   
Genomic Coordinates chr21: 33550662 - 33550728
Description Homo sapiens miR-6501 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6501-5p
Sequence 3| AGUUGCCAGGGCUGCCUUUGGU |24
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1055619 20 ClinVar
COSM5974214 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756127353 5 dbSNP
rs764400023 6 dbSNP
rs753967693 8 dbSNP
rs1283296362 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol YWHAB   
Synonyms GW128, HEL-S-1, HS1, KCIP-1, YWHAA
Description tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta
Transcript NM_003404   
Other Transcripts NM_139323   
Expression
Putative miRNA Targets on YWHAB
3'UTR of YWHAB
(miRNA target sites are highlighted)
>YWHAB|NM_003404|3'UTR
   1 TGTTTCTCGTGCTTTGTGATCTGTTCAGTGTCACTCTGTACCCTCAACATATATCCCTTGTGCGATAAAAAAAAAAAAAA
  81 AAAAAAAAAGAGAATCGTACGTCGACTTTCGATTTTTCACAGCCTCAGCCTAGGAAAAATGGTTCATGGGATAAACAGCT
 161 GGTATTTGTATCTAAAACTCAGATTGGTCACATAAATGCCACGGCATTCCGAAGTTTTGATTTTGATTAACATTGACAGG
 241 ATTACTGTGTGTTTAATTTTTTAAAAACTGAACACTGTGATTATGGGGTTTTGTAATTTAGCAGAACTCTTACTGGTAGA
 321 AAAAATAGACCTGAATTATGTGTAACTTTTTGGAAGGTTTAATCTGATATCAAAATAATCATTGAAATACAATTCCATTG
 401 TAAAGTTGTACAGAAAGTTATAGAGATTATATTGTGATGCTGGAACTTGGAGTGAGACACACATCATTTGGCATTTGAGT
 481 TGAATGGTAATTCACAGTAATGCTGCCGTTGTTCGGGACTTAAAGACACTTGACCTGTTTGGGCTGTTGCCACTTAAAAG
 561 TTCATGACCACAAATGTCCACAGTGTCTTCCTCTGAGGAAACTCGAATCCTGAAATGGAAATTCTTTGTGGCAGATAACT
 641 GGCTTATGACACCTTGAAAAGTTCAAGTGCTCATATAACACACCACACTGAACCCCCTTTCCTACAGCAATATGTTCACT
 721 ATGTTACCAATTTGCAACTTGTGCTTCAATAGTGGAATCTACTTTCATTGTTAACACTGAGCTAAAGAAAAAAAGCCGTG
 801 TGTTTTATGAATGACCTTATCTGTTTCCTGGATAATACCTTTAAGAATAATGTCCTGAGTCAGGCGTGGTGGTGCGTGCA
 881 TCTAGTCCCAACTATTTGGGAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTTAAAGCTGCAGTGCCCTGTGGTTG
 961 CACCTGTGAATAACTGCACTCCAGCCTGGGCAACATAGCGAGACCTCATCTCCAAAAAAGAAAACAAAAAACAAAAAAAG
1041 GAATGATGTTCTGTAGAGATGGCCTTTCACTTGAGGAGTACTCAGTTTTCAGGTTCTTCCTAGCTCGGGGCTTTTAAATT
1121 TTGAAATCTAAACATTCTTTCCCACCATCCTTTTTGACTGTTGACCTTGGTTTTCTCTTCTAAGTTTCTGTCCCTCTGCT
1201 TCCTTACTTTTTTTCCTTTTTGAATTCTATCTTTATCTGTCTTTTGTTCACTTTTTAATGCTATATATGGGCAGGGGTGA
1281 GAGACATTACTGAGCACCTTGGTGAGCAAGCCTGGCTTTAAAGATTGGAGAAGAGCTTCTGGCACCAGAACCCTGTCTTC
1361 CTCCAGTTCTCAACACGGTGTTGCTCTTCAGTCATACCGGAATCTGAATCAAAAAAGTATTTTTAAATATCCATGATTTC
1441 TCCCTGTATTGAGGCTAGCCCTGATCATGCTTTTTGTGCCTGTCACCAGGTCTCCCAAGTGCACTCATCCAGGTCAGTGC
1521 TCAGATGTGTTTAAGGAGACCCTATATTCAGGGAAGTTGCGTGAACACTGCAGTGGGGAGAATTGAGAATAGTCAGGCCT
1601 ATCAGTCTCACAGAATCACCCCTCTACCTTTGATATTCCACTTAGCTGTAGAGTCCATCTGTTTGTCCATCTGCTGAAAT
1681 GAGAAAAGAAAAATTTATGCACTGATTTAAAACAAACCAAAAAAAAAGAAAAAAACAAAAAAAAAAATCCCTCCTTTCTA
1761 GCTGAACAAAAATGTGCAGTTAATACTTGGCGCTTGAAAATGCAGTAGTGAATGTGGAACCAAGCCTGTCTGTATATCTG
1841 GTAGCTCTTTTCTTGCTTTGTTTTTTCTTACCAGTATTCTGCCTAACGTTTGCTTCTGTGATGGTTATATTGCCTAGCAA
1921 GCACACCCGTGGTTGTGAAAATAGTATAGCAAAAAAGAAAAATCCCCGGTTATTGATGTACTAGATTTGTGTATGTCTTT
2001 TAAACAGTTCTAGTTTCACCTTACACAGAATAATCAGGAAAAGTGTAAAAATTCAAAAGTGAAATAAAAATTTTATCAGT
2081 TAGTTGCCTGTGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' ctgcactcCAGCCTGGGCAACa 3'
974 - 995 134.00 -18.50
2
miRNA  3' uggUUUCCGUCG-GGACCGUUGa 5'
             :|||  ||| :|||||| | 
Target 5' ggaGAAG--AGCTTCTGGCACCa 3'
1327 - 1347 127.00 -11.80
3
miRNA  3' ugGUUUCCGUCGG-------GACCGUUGa 5'
            | ||| | |:|       ||||:|:| 
Target 5' aaCCAAGCCTGTCTGTATATCTGGTAGCt 3'
1818 - 1846 120.00 -16.71
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30721241 10 COSMIC
COSN30124059 18 COSMIC
COSN30447767 44 COSMIC
COSN30128504 51 COSMIC
COSN30112576 57 COSMIC
COSN19184540 68 COSMIC
COSN31591192 69 COSMIC
COSN18750188 86 COSMIC
COSN8610994 91 COSMIC
COSN30460587 97 COSMIC
COSN31580556 203 COSMIC
COSN31576208 249 COSMIC
COSN20079808 263 COSMIC
COSN31523432 345 COSMIC
COSN1873483 659 COSMIC
COSN19380372 1044 COSMIC
COSN23758967 1232 COSMIC
COSN7093869 1466 COSMIC
COSN31578850 1605 COSMIC
COSN5971925 1672 COSMIC
COSN26574276 1706 COSMIC
COSN32058169 1727 COSMIC
COSN20116475 1728 COSMIC
COSN7093870 1738 COSMIC
COSN20116477 1740 COSMIC
COSN32062406 1748 COSMIC
COSN31520921 1831 COSMIC
COSN31609408 2072 COSMIC
rs8356 1377 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771219211 9 dbSNP
rs759679647 10 dbSNP
rs1235142086 14 dbSNP
rs6876 23 dbSNP
rs1187292493 24 dbSNP
rs761211599 26 dbSNP
rs764564466 27 dbSNP
rs754253800 29 dbSNP
rs779759903 32 dbSNP
rs369051047 35 dbSNP
rs1319024239 36 dbSNP
rs754663645 39 dbSNP
rs1269145456 42 dbSNP
rs1478837646 43 dbSNP
rs780912815 48 dbSNP
rs747625868 49 dbSNP
rs1375247020 52 dbSNP
rs375543853 53 dbSNP
rs1451838517 54 dbSNP
rs1311752479 56 dbSNP
rs1352957753 61 dbSNP
rs1383624298 64 dbSNP
rs1491500994 65 dbSNP
rs745674726 65 dbSNP
rs753426740 65 dbSNP
rs1158618301 66 dbSNP
rs1491336736 66 dbSNP
rs1003577121 67 dbSNP
rs1213190681 67 dbSNP
rs1236256545 67 dbSNP
rs1244921042 67 dbSNP
rs1259847857 67 dbSNP
rs1318285393 67 dbSNP
rs1410604112 67 dbSNP
rs1461363404 67 dbSNP
rs1463396358 67 dbSNP
rs775632748 67 dbSNP
rs778717529 67 dbSNP
rs780141521 67 dbSNP
rs879020827 67 dbSNP
rs1325682034 68 dbSNP
rs1288571720 69 dbSNP
rs1224939812 75 dbSNP
rs1282136525 80 dbSNP
rs1348544253 81 dbSNP
rs1209985819 82 dbSNP
rs368162171 83 dbSNP
rs372424925 84 dbSNP
rs768258387 84 dbSNP
rs779890558 84 dbSNP
rs377225648 85 dbSNP
rs1262652505 86 dbSNP
rs1383980556 86 dbSNP
rs3208334 86 dbSNP
rs1166009694 87 dbSNP
rs1428339539 88 dbSNP
rs1035119422 89 dbSNP
rs879169305 89 dbSNP
rs1221520258 90 dbSNP
rs1263407191 90 dbSNP
rs45467003 91 dbSNP
rs1293935300 92 dbSNP
rs1397224788 93 dbSNP
rs959442942 96 dbSNP
rs1294959133 97 dbSNP
rs1012094122 98 dbSNP
rs571580745 101 dbSNP
rs983403898 102 dbSNP
rs1364101694 104 dbSNP
rs1173550718 111 dbSNP
rs907528107 112 dbSNP
rs1454868898 113 dbSNP
rs1372961908 127 dbSNP
rs1167746736 129 dbSNP
rs1289139262 136 dbSNP
rs965708425 137 dbSNP
rs976196688 141 dbSNP
rs1345657033 145 dbSNP
rs533947019 146 dbSNP
rs114425623 147 dbSNP
rs1380132221 157 dbSNP
rs764029229 171 dbSNP
rs753672849 173 dbSNP
rs1225379984 177 dbSNP
rs1049911780 179 dbSNP
rs1233548994 185 dbSNP
rs140521407 186 dbSNP
rs1305366888 188 dbSNP
rs1387669795 193 dbSNP
rs1396464994 203 dbSNP
rs1296935466 204 dbSNP
rs946967970 205 dbSNP
rs1042652767 207 dbSNP
rs542754305 211 dbSNP
rs1241241167 212 dbSNP
rs1199344359 223 dbSNP
rs1261332255 223 dbSNP
rs902490019 229 dbSNP
rs1248390415 233 dbSNP
rs1197467118 246 dbSNP
rs1485681818 249 dbSNP
rs373541930 256 dbSNP
rs1258814815 263 dbSNP
rs575590766 275 dbSNP
rs1056922002 276 dbSNP
rs1203064533 276 dbSNP
rs1255352486 277 dbSNP
rs1276800539 284 dbSNP
rs1234484272 294 dbSNP
rs1335534787 297 dbSNP
rs1305580221 301 dbSNP
rs1469188785 305 dbSNP
rs765432467 308 dbSNP
rs1393651308 313 dbSNP
rs149358399 320 dbSNP
rs564408795 324 dbSNP
rs1467736391 325 dbSNP
rs533471563 331 dbSNP
rs1172774750 334 dbSNP
rs1423657287 347 dbSNP
rs1421348479 349 dbSNP
rs1361841902 353 dbSNP
rs1183652243 357 dbSNP
rs1440266719 364 dbSNP
rs951891541 369 dbSNP
rs1004766963 371 dbSNP
rs1362647769 373 dbSNP
rs1014850290 374 dbSNP
rs1327485932 377 dbSNP
rs144366020 378 dbSNP
rs965677480 381 dbSNP
rs1350142001 385 dbSNP
rs540408961 393 dbSNP
rs1242706541 396 dbSNP
rs1378328728 398 dbSNP
rs1314923774 403 dbSNP
rs1449891300 407 dbSNP
rs750483889 409 dbSNP
rs921625387 414 dbSNP
rs192245683 418 dbSNP
rs529367575 422 dbSNP
rs549413233 444 dbSNP
rs555271982 454 dbSNP
rs758457026 464 dbSNP
rs1059833 470 dbSNP
rs148013145 473 dbSNP
rs1224229653 474 dbSNP
rs1384588128 485 dbSNP
rs562853120 498 dbSNP
rs915402264 508 dbSNP
rs780457399 509 dbSNP
rs747555344 515 dbSNP
rs1446658980 516 dbSNP
rs1259864458 518 dbSNP
rs1485209215 523 dbSNP
rs531705072 530 dbSNP
rs144725033 538 dbSNP
rs138363016 547 dbSNP
rs1226867081 551 dbSNP
rs573622077 554 dbSNP
rs924207277 561 dbSNP
rs1358993835 562 dbSNP
rs534116144 567 dbSNP
rs1429368664 570 dbSNP
rs1324367948 574 dbSNP
rs1213484349 579 dbSNP
rs1245306953 595 dbSNP
rs1056450953 602 dbSNP
rs1300991229 603 dbSNP
rs755459117 605 dbSNP
rs1481910225 606 dbSNP
rs1163937339 626 dbSNP
rs1475106940 628 dbSNP
rs1430297011 671 dbSNP
rs1371602023 672 dbSNP
rs781596713 674 dbSNP
rs895175682 676 dbSNP
rs1249274339 679 dbSNP
rs1012323234 680 dbSNP
rs1049617926 689 dbSNP
rs887569656 695 dbSNP
rs748511597 702 dbSNP
rs1218869352 711 dbSNP
rs1344414348 718 dbSNP
rs1281166801 721 dbSNP
rs142953770 722 dbSNP
rs774003203 723 dbSNP
rs146107881 724 dbSNP
rs1328074736 728 dbSNP
rs140134212 731 dbSNP
rs771648540 742 dbSNP
rs376416562 749 dbSNP
rs1355990637 750 dbSNP
rs774838793 752 dbSNP
rs1428815485 753 dbSNP
rs1197770055 755 dbSNP
rs1479198478 760 dbSNP
rs953198475 769 dbSNP
rs1204438902 785 dbSNP
rs201191165 788 dbSNP
rs989881631 797 dbSNP
rs556187881 798 dbSNP
rs968164453 799 dbSNP
rs1280936563 803 dbSNP
rs1220785766 814 dbSNP
rs1408059801 821 dbSNP
rs978217450 827 dbSNP
rs575753172 829 dbSNP
rs2664584 833 dbSNP
rs184263586 836 dbSNP
rs1333485116 839 dbSNP
rs924134966 843 dbSNP
rs538224257 848 dbSNP
rs1405694281 856 dbSNP
rs190724641 863 dbSNP
rs1416584428 864 dbSNP
rs939615966 866 dbSNP
rs1232832899 867 dbSNP
rs1469074719 874 dbSNP
rs1288187304 875 dbSNP
rs992854000 876 dbSNP
rs1309618105 877 dbSNP
rs577904269 878 dbSNP
rs540970334 881 dbSNP
rs948049137 883 dbSNP
rs1049150041 889 dbSNP
rs560627477 892 dbSNP
rs1309866573 904 dbSNP
rs940786225 911 dbSNP
rs1036180393 912 dbSNP
rs1481815212 920 dbSNP
rs1189469029 921 dbSNP
rs1418219430 935 dbSNP
rs181971830 962 dbSNP
rs997435582 964 dbSNP
rs1183036872 965 dbSNP
rs1179689389 968 dbSNP
rs1241129923 978 dbSNP
rs369668379 982 dbSNP
rs542869617 983 dbSNP
rs115177153 987 dbSNP
rs888749042 992 dbSNP
rs1169714393 996 dbSNP
rs1368653682 1000 dbSNP
rs1230063989 1001 dbSNP
rs776570396 1010 dbSNP
rs1288487358 1011 dbSNP
rs576618225 1014 dbSNP
rs768955837 1021 dbSNP
rs1299110576 1022 dbSNP
rs761644413 1028 dbSNP
rs1356109104 1029 dbSNP
rs1447651806 1042 dbSNP
rs531870391 1047 dbSNP
rs1166326929 1048 dbSNP
rs1423869950 1049 dbSNP
rs977180638 1055 dbSNP
rs765402004 1061 dbSNP
rs1031121254 1062 dbSNP
rs961165334 1066 dbSNP
rs750619457 1069 dbSNP
rs1221399113 1077 dbSNP
rs1487483856 1080 dbSNP
rs916834481 1082 dbSNP
rs1223929011 1084 dbSNP
rs948050073 1092 dbSNP
rs184516728 1098 dbSNP
rs11556820 1107 dbSNP
rs556331268 1108 dbSNP
rs1279254680 1126 dbSNP
rs1213560606 1128 dbSNP
rs1036484704 1130 dbSNP
rs1389273447 1131 dbSNP
rs1295791303 1134 dbSNP
rs1458031988 1135 dbSNP
rs901642937 1135 dbSNP
rs1353422768 1142 dbSNP
rs188983062 1151 dbSNP
rs1485057761 1152 dbSNP
rs1050340393 1161 dbSNP
rs889045504 1165 dbSNP
rs1431207124 1166 dbSNP
rs1243467867 1173 dbSNP
rs567464702 1174 dbSNP
rs1191699463 1175 dbSNP
rs1475509778 1176 dbSNP
rs142438379 1178 dbSNP
rs8787 1181 dbSNP
rs1320309006 1185 dbSNP
rs569393119 1191 dbSNP
rs538384130 1194 dbSNP
rs998527552 1195 dbSNP
rs1303781642 1197 dbSNP
rs1035402628 1206 dbSNP
rs960879684 1207 dbSNP
rs1014181980 1208 dbSNP
rs1413945013 1216 dbSNP
rs1466705402 1235 dbSNP
rs558129856 1246 dbSNP
rs544092525 1251 dbSNP
rs1347198478 1259 dbSNP
rs1431704190 1262 dbSNP
rs1023832878 1277 dbSNP
rs1464415814 1278 dbSNP
rs571663423 1287 dbSNP
rs970028449 1303 dbSNP
rs1199229081 1311 dbSNP
rs1363396285 1323 dbSNP
rs1237215969 1327 dbSNP
rs1176893745 1331 dbSNP
rs1459136560 1338 dbSNP
rs180863513 1352 dbSNP
rs1239091305 1361 dbSNP
rs1200100128 1367 dbSNP
rs985081926 1370 dbSNP
rs1343735409 1376 dbSNP
rs8356 1377 dbSNP
rs1285702319 1378 dbSNP
rs1447226931 1379 dbSNP
rs1307682128 1390 dbSNP
rs962046683 1395 dbSNP
rs1214563838 1400 dbSNP
rs1376986785 1411 dbSNP
rs1335410124 1416 dbSNP
rs1393941263 1434 dbSNP
rs1246030531 1437 dbSNP
rs753079360 1443 dbSNP
rs139011529 1446 dbSNP
rs1172971731 1461 dbSNP
rs1452742725 1464 dbSNP
rs1378455755 1472 dbSNP
rs1160381573 1494 dbSNP
rs2664577 1495 dbSNP
rs1440167168 1505 dbSNP
rs972104570 1507 dbSNP
rs1186875071 1509 dbSNP
rs1440942204 1510 dbSNP
rs1258494223 1511 dbSNP
rs923369230 1525 dbSNP
rs1488159666 1528 dbSNP
rs1469649485 1545 dbSNP
rs1284590158 1548 dbSNP
rs933140645 1554 dbSNP
rs1354976430 1561 dbSNP
rs1050666548 1562 dbSNP
rs1241931267 1582 dbSNP
rs1394377768 1583 dbSNP
rs1341934046 1591 dbSNP
rs910424425 1598 dbSNP
rs1381509272 1600 dbSNP
rs756459272 1602 dbSNP
rs947298278 1604 dbSNP
rs1476970183 1606 dbSNP
rs543186609 1609 dbSNP
rs1410168112 1612 dbSNP
rs13449 1614 dbSNP
rs902814929 1617 dbSNP
rs1370480117 1620 dbSNP
rs1188501022 1621 dbSNP
rs1477579219 1622 dbSNP
rs11556819 1624 dbSNP
rs998493444 1625 dbSNP
rs530180264 1629 dbSNP
rs576602221 1638 dbSNP
rs1158687911 1645 dbSNP
rs1056853019 1647 dbSNP
rs1284209015 1660 dbSNP
rs895541334 1660 dbSNP
rs777964039 1670 dbSNP
rs1217653601 1672 dbSNP
rs1337904124 1677 dbSNP
rs1012692824 1681 dbSNP
rs1386961449 1682 dbSNP
rs1349276675 1689 dbSNP
rs1024223067 1702 dbSNP
rs1403740305 1703 dbSNP
rs1392974173 1708 dbSNP
rs1163853127 1709 dbSNP
rs1465322253 1709 dbSNP
rs969581140 1710 dbSNP
rs1443538738 1714 dbSNP
rs1326940551 1718 dbSNP
rs1197419199 1719 dbSNP
rs1315723612 1719 dbSNP
rs144950386 1719 dbSNP
rs1478338535 1719 dbSNP
rs58754462 1719 dbSNP
rs1219075758 1726 dbSNP
rs1259566356 1726 dbSNP
rs1491056148 1727 dbSNP
rs547573221 1727 dbSNP
rs397767907 1728 dbSNP
rs60230203 1728 dbSNP
rs1060391 1729 dbSNP
rs1465137825 1729 dbSNP
rs536521359 1729 dbSNP
rs878962793 1729 dbSNP
rs1280801527 1731 dbSNP
rs1350753428 1732 dbSNP
rs1173073714 1733 dbSNP
rs774744131 1733 dbSNP
rs1398199209 1734 dbSNP
rs1424924865 1734 dbSNP
rs1479310258 1734 dbSNP
rs1491024882 1735 dbSNP
rs867369234 1735 dbSNP
rs1265812101 1736 dbSNP
rs761486189 1736 dbSNP
rs1016528015 1737 dbSNP
rs1345678026 1737 dbSNP
rs1389271549 1737 dbSNP
rs1491433714 1737 dbSNP
rs3208479 1737 dbSNP
rs397727628 1737 dbSNP
rs878937174 1737 dbSNP
rs1443235873 1738 dbSNP
rs58037333 1738 dbSNP
rs60995368 1739 dbSNP
rs1396271461 1740 dbSNP
rs1438311863 1740 dbSNP
rs1381636392 1741 dbSNP
rs1482741773 1741 dbSNP
rs1235352233 1742 dbSNP
rs1336732062 1742 dbSNP
rs1285301050 1743 dbSNP
rs1237872797 1745 dbSNP
rs75977206 1748 dbSNP
rs80060706 1749 dbSNP
rs1224382496 1765 dbSNP
rs1311601149 1765 dbSNP
rs1378787974 1781 dbSNP
rs1301304490 1786 dbSNP
rs1214116923 1797 dbSNP
rs1376451065 1812 dbSNP
rs1266355823 1813 dbSNP
rs1449796694 1821 dbSNP
rs1362961159 1830 dbSNP
rs1159244690 1832 dbSNP
rs1422703752 1835 dbSNP
rs1411250322 1838 dbSNP
rs1183231398 1841 dbSNP
rs1475290939 1844 dbSNP
rs745580135 1848 dbSNP
rs1234731684 1851 dbSNP
rs1214131950 1852 dbSNP
rs1489255503 1852 dbSNP
rs1470550167 1857 dbSNP
rs1286628203 1858 dbSNP
rs962015966 1860 dbSNP
rs1321194671 1863 dbSNP
rs1410064185 1871 dbSNP
rs1463174058 1877 dbSNP
rs545470627 1888 dbSNP
rs771609230 1889 dbSNP
rs923326691 1894 dbSNP
rs1342988982 1907 dbSNP
rs1166108382 1915 dbSNP
rs1457028583 1918 dbSNP
rs954955242 1921 dbSNP
rs1166213143 1927 dbSNP
rs550228087 1929 dbSNP
rs527649016 1930 dbSNP
rs1422434108 1932 dbSNP
rs1191298469 1933 dbSNP
rs910343145 1948 dbSNP
rs1331457166 1967 dbSNP
rs947224863 1968 dbSNP
rs1042927715 1969 dbSNP
rs1263783854 1970 dbSNP
rs924542090 1974 dbSNP
rs934605645 1984 dbSNP
rs1257634327 1986 dbSNP
rs1057181959 1990 dbSNP
rs1320441166 2002 dbSNP
rs866351400 2002 dbSNP
rs1296652867 2011 dbSNP
rs895524203 2013 dbSNP
rs746452252 2014 dbSNP
rs1044162194 2025 dbSNP
rs1440977722 2027 dbSNP
rs905324769 2060 dbSNP
rs1399168021 2066 dbSNP
rs14831 2066 dbSNP
rs1233446595 2072 dbSNP
rs1168094083 2076 dbSNP
rs1466804637 2079 dbSNP
rs1373449633 2089 dbSNP
rs886847951 2090 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 7529.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714643. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' cugcacucCAGCCUGGGCAACa 3'
3 - 24
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 7529.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' cugcacucCAGCCUGGGCAACa 3'
3 - 24
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714643
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000353703.4 | 3UTR | AACUGCACUCCAGCCUGGGCAACAUAGCGAGACCUCAUCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000353703.4 | 3UTR | AACUGCACUCCAGCCUGGGCAACAUAGCGAGACCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
167 hsa-miR-6501-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT156859 FAM126B family with sequence similarity 126 member B 2 2
MIRT173355 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT369102 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT442037 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT442829 AZIN1 antizyme inhibitor 1 2 2
MIRT443729 CCND2 cyclin D2 2 2
MIRT453771 NUCB1 nucleobindin 1 2 10
MIRT453875 IFRD1 interferon related developmental regulator 1 2 12
MIRT454229 OSBPL10 oxysterol binding protein like 10 2 11
MIRT458829 RPUSD2 RNA pseudouridylate synthase domain containing 2 2 2
MIRT459898 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 10
MIRT464162 VMP1 vacuole membrane protein 1 2 15
MIRT495411 SMAD2 SMAD family member 2 2 2
MIRT496906 TRIM56 tripartite motif containing 56 2 2
MIRT498653 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 6
MIRT498706 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499308 ZNF485 zinc finger protein 485 2 6
MIRT499707 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499755 CIRH1A UTP4, small subunit processome component 2 6
MIRT499827 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT503691 MAVS mitochondrial antiviral signaling protein 2 2
MIRT512418 LAYN layilin 2 4
MIRT516232 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT522554 MCAM melanoma cell adhesion molecule 2 4
MIRT523760 FBXO27 F-box protein 27 2 4
MIRT525107 PRKD2 protein kinase D2 2 2
MIRT525919 KIAA0391 KIAA0391 2 2
MIRT527246 COMMD6 COMM domain containing 6 2 2
MIRT527564 ADCY7 adenylate cyclase 7 2 2
MIRT528764 CD1D CD1d molecule 2 2
MIRT529362 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529464 ZNF546 zinc finger protein 546 2 2
MIRT530676 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531635 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT531909 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT532172 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534234 SLC25A16 solute carrier family 25 member 16 2 4
MIRT534561 RRAGD Ras related GTP binding D 2 2
MIRT534971 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536738 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT538544 CELF1 CUGBP Elav-like family member 1 2 2
MIRT540462 ZNF71 zinc finger protein 71 2 2
MIRT540554 PPIC peptidylprolyl isomerase C 2 2
MIRT543593 KIAA1549 KIAA1549 2 2
MIRT543963 RNF20 ring finger protein 20 2 2
MIRT544047 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544670 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT550665 TRAF1 TNF receptor associated factor 1 2 2
MIRT558540 CSNK1G3 casein kinase 1 gamma 3 2 4
MIRT574917 Vmp1 vacuole membrane protein 1 2 9
MIRT575298 Osbpl10 oxysterol binding protein-like 10 2 7
MIRT607960 SNX22 sorting nexin 22 2 2
MIRT610649 TIPRL TOR signaling pathway regulator 2 8
MIRT615899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT617438 CCS copper chaperone for superoxide dismutase 2 2
MIRT617510 C5orf45 MRN complex interacting protein 2 2
MIRT617548 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT620565 WBSCR27 methyltransferase like 27 2 2
MIRT623166 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624161 DGKE diacylglycerol kinase epsilon 2 2
MIRT626090 MKLN1 muskelin 1 2 2
MIRT627010 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627073 SF3A1 splicing factor 3a subunit 1 2 2
MIRT627136 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT627340 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT627436 TAS2R5 taste 2 receptor member 5 2 2
MIRT628273 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629091 F2RL1 F2R like trypsin receptor 1 2 4
MIRT629282 UNC13A unc-13 homolog A 2 2
MIRT630122 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 2
MIRT630247 SMTNL2 smoothelin like 2 2 2
MIRT631260 CENPM centromere protein M 2 2
MIRT631336 CD300E CD300e molecule 2 2
MIRT631399 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT632593 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632991 DUSP18 dual specificity phosphatase 18 2 2
MIRT633079 CXorf21 chromosome X open reading frame 21 2 2
MIRT634223 TMEM132B transmembrane protein 132B 2 2
MIRT635046 MYH11 myosin heavy chain 11 2 2
MIRT636444 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636649 CDK4 cyclin dependent kinase 4 2 2
MIRT637129 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT637282 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT637527 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT637783 OLA1 Obg like ATPase 1 2 2
MIRT637920 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT638238 SLC1A5 solute carrier family 1 member 5 2 2
MIRT638444 PLXDC2 plexin domain containing 2 2 2
MIRT639765 GPR45 G protein-coupled receptor 45 2 2
MIRT640437 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643006 ZNF829 zinc finger protein 829 2 2
MIRT644233 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644661 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644957 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT645086 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645256 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT645861 GBP6 guanylate binding protein family member 6 2 2
MIRT645987 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646502 FAM217B family with sequence similarity 217 member B 2 2
MIRT646811 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647706 NFX1 nuclear transcription factor, X-box binding 1 2 2
MIRT649657 TEP1 telomerase associated protein 1 2 2
MIRT650550 YIPF4 Yip1 domain family member 4 2 2
MIRT650785 GSR glutathione-disulfide reductase 2 2
MIRT651461 XIAP X-linked inhibitor of apoptosis 2 2
MIRT652098 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT654117 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658901 DPY19L4 dpy-19 like 4 2 2
MIRT659370 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT662537 MTAP methylthioadenosine phosphorylase 2 2
MIRT662617 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT663491 IYD iodotyrosine deiodinase 2 2
MIRT663899 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT664552 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664582 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664953 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT665193 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT665446 WDR17 WD repeat domain 17 2 2
MIRT665894 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT666480 SBNO1 strawberry notch homolog 1 2 2
MIRT666514 RNF170 ring finger protein 170 2 2
MIRT666692 RBM23 RNA binding motif protein 23 2 2
MIRT666791 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT667453 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667553 LRAT lecithin retinol acyltransferase 2 4
MIRT667744 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668080 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT668114 GK5 glycerol kinase 5 (putative) 2 2
MIRT668501 ESYT2 extended synaptotagmin 2 2 2
MIRT668942 CNKSR3 CNKSR family member 3 2 2
MIRT670408 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671134 CD226 CD226 molecule 2 2
MIRT671919 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672287 GP2 glycoprotein 2 2 2
MIRT672427 POLR2D RNA polymerase II subunit D 2 2
MIRT672762 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672923 LRRC2 leucine rich repeat containing 2 2 2
MIRT673150 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673309 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673560 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673895 DCTN6 dynactin subunit 6 2 2
MIRT674513 PRR23A proline rich 23A 2 2
MIRT674614 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674747 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675693 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675890 SNAP29 synaptosome associated protein 29 2 2
MIRT685271 KIAA1143 KIAA1143 2 2
MIRT686057 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693886 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT695594 TMEM199 transmembrane protein 199 2 2
MIRT696592 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698041 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT699907 RUNDC1 RUN domain containing 1 2 2
MIRT706608 CYB5B cytochrome b5 type B 2 2
MIRT706628 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706640 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT706676 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT706723 RFK riboflavin kinase 2 2
MIRT706857 MAFF MAF bZIP transcription factor F 2 2
MIRT706891 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT706958 FANCC Fanconi anemia complementation group C 2 2
MIRT706976 XPO5 exportin 5 2 2
MIRT707010 RRP36 ribosomal RNA processing 36 2 2
MIRT707028 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707068 MED29 mediator complex subunit 29 2 2
MIRT713253 ZFP30 ZFP30 zinc finger protein 2 2
MIRT719130 NR2F6 nuclear receptor subfamily 2 group F member 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6501-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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