pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SKP1   
Synonyms EMC19, OCP-II, OCP2, SKP1A, TCEB1L, p19A
Description S-phase kinase associated protein 1
Transcript NM_006930   
Other Transcripts NM_170679   
Expression
Putative miRNA Targets on SKP1
3'UTR of SKP1
(miRNA target sites are highlighted)
>SKP1|NM_006930|3'UTR
   1 TCACATGCTCTTAAAAAGGGAGTAACACCTATAACATGCCAGCAAAAGAGGTGACTGTATCAAGTAGTCTTGATACTTTA
  81 GGGATAATATGTACTTAATGTGTCTTAAACATACTCTTACTGTTCTGTCTTTATGAATCTGAACACTTAGATGATACTGC
 161 ATTTTAAGCATAAGAACAATTAGTTTTCAATGAGAAGAGCTCTTGTTAATGTATTAACAGTTACTAGTTTTGGCACCTGC
 241 AACTTTCTGTATAGACCATACATATCTGACATCAGAAAAGCAGGCCCTAGAGAGAAGTATATACTAGGGTACTTTAGAGC
 321 AACTTAATGAGGGGAGGAAATGAAAGAATAGATCAGAATGATTTTGTTGACATGACTACAGACTGAAATAATGTGAATGA
 401 ATTAACTGAATTTGCTCTGTCAACTTTAGTAAATTGCCCATTGCCTTTGCTTTGTTCATAATTTCAGCAGGGCAGAATAA
 481 AAACCATGGGAGGCAAAGAAAGGAAATCCGGAAATATAGTCTTAACCTGGTGTTGTTCTAATTTTCCATCTGTTCTTCTG
 561 ACTCAACTCACTGGCTATCGATGAATCAGTAGGTAGTATTTATAAGTCTTAGGAAAGACTACTCAAGTTAAGGTACTTCC
 641 CTATATCCATCTCTTTTAGGTACGCAAAGAGAACCAGTGGTGTGAAGAGAAGTGAAATGTTGTGCCTGACACTGTAACAC
 721 TGTAAGGATTGTTCCAAATACTAGTTGCACTGCTCTGTTTATAATTGTTAATATTAGACAAACAGTAGACAAATGCAGCA
 801 GCAAGTCAATTGTATTAGCAGAATATTGTCCTCATTGCATGTGTAGTTTGAGCACAGATCCCAAACCTTACGGCCAAGTT
 881 TCTTCTAGTATGATGGAAAGTTTCTTTTTTCTTTGCTCTGAATAAAACTGAACTGTGGGTTCTCTATAAGTGGCATTTTG
 961 GGCTTTCCCTCTTTTTTGTAAAGCAATGTCTGCCTAGTTTATTGTCCAGTTAACTTTAGTGACCTTTTAAAAGTTGGCAT
1041 TGTAAATAAAACAACTTGCAAAAAAGTTTTCTGGAATAGAATTAACAAAATATTATCTTTATTCATGAGTTGGAAACTGG
1121 AAAAAGGCTTCTTGAAGTAAATGTTCTGAGTGGAGCTACTAGGATGTCTTCCAGCCTCCTGCAGTCAAGGAGTACCACTG
1201 TATTGATTAGCCTGTATGTAGCAGGGCTCCCTTCATTGCATCTGAGGACTTGTTTTCTTTTTCTTTATTTTTAATCCTCT
1281 TAGTTTTAAATATATTGCCTAGAGACTCAGTTACTACCCAGTTTGTGGTTTTTTGGGAGAAATGTAACTGGACAGTTAGC
1361 TTTTCAATTAAAAAGACACTTAACCCATGTGGGATGTCATCTTTTTATAATTAGTGTTCCCATGTGGAGAAAATTATTCA
1441 CACTACTTGCATGTAAAGAATAATTTAACTTTTAACATTAAAATATGTGGTAAAACCCAGAAAGCATCCATCATGAATGC
1521 AAGATACTTTCAATAAAAAGTAAGTTATATAGTAGGTAGTTAAGTTTGCTTTTGTGGACTTAAATGTGTCTCTTCACTTA
1601 AATGGGTTGAATGTGTATATATTTGTTCAGCTTGAAAAGACTTAGTTTATATCCTAGCTCACTGGAGGCTGCTGACATAA
1681 CCATAACTTCTGTCCCTTCTAATTGTCATTTATATGCCTAACTGGAGCTAGTACTTTAATTCTTAACACAAAATTACTCT
1761 GCCATTGTTTCCAGCTTCCCTCCTACAATAGAATGAAGTTTTTTTGATGGCTTGAGATGGCTCACAAATTTTGATTTTTT
1841 TTTCTTCCTTGTGCTCCCTTTTTTTCTCCTTGCTTTTCCAGTTAACATCTATATTCACATGTAATCTTGTTTTCTCTTCA
1921 CATTCACTGAGTTGTTCAGGCTCAGATCATCCCTTGACAGTAGTTTGCCTTCATCTCACCTTTCATTTGTCCCAAATTCA
2001 CCTTATTTAATAAAGTCCCATATGTTGTCTCACTTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGAC-CUAC-----GUUUAAAAu 5'
            :|| ||||     |||||||| 
Target 5' gcTTGAGATGGCTCACAAATTTTg 3'
1810 - 1833 152.00 -11.80
2
miRNA  3' agGACC----UACGUUUAAAAu 5'
            ||||    :| | |||||| 
Target 5' acCTGGTGTTGTTCTAATTTTc 3'
525 - 546 122.00 -10.80
3
miRNA  3' agGACC-U--ACGUUUAAAau 5'
            :||| |  ||||| |||  
Target 5' ttTTGGCACCTGCAACTTTct 3'
228 - 248 106.00 -5.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30155132 2 COSMIC
COSN28869908 13 COSMIC
COSN30499746 59 COSMIC
COSN30520943 89 COSMIC
COSN16372591 143 COSMIC
COSN31610174 186 COSMIC
COSN9926119 358 COSMIC
COSN7875513 388 COSMIC
COSN29287509 433 COSMIC
COSN31492323 474 COSMIC
COSN30515444 517 COSMIC
COSN14139810 533 COSMIC
COSN31525385 544 COSMIC
COSN20069471 594 COSMIC
COSN30167562 605 COSMIC
COSM6779083 663 COSMIC
COSM4985624 672 COSMIC
COSN30100136 697 COSMIC
COSN510676 729 COSMIC
COSN30476059 734 COSMIC
COSN31612586 753 COSMIC
COSN7875512 871 COSMIC
COSN30165701 950 COSMIC
COSN31596610 985 COSMIC
COSN16239698 1156 COSMIC
COSN28800485 1203 COSMIC
COSN8491869 1238 COSMIC
COSN31569398 1307 COSMIC
COSN31555521 1328 COSMIC
COSN29554476 1358 COSMIC
COSN30176673 1451 COSMIC
COSN26465534 1458 COSMIC
COSN26465758 1474 COSMIC
COSN27718843 1511 COSMIC
COSN31565006 1531 COSMIC
COSN32069237 1609 COSMIC
COSN31962459 1625 COSMIC
COSN25316588 1713 COSMIC
COSN2071074 1750 COSMIC
COSN5589656 1788 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139317752 2 dbSNP
rs1190741045 3 dbSNP
rs753058110 5 dbSNP
rs576452926 6 dbSNP
rs1201445692 10 dbSNP
rs377426029 21 dbSNP
rs749991684 23 dbSNP
rs368058390 26 dbSNP
rs1346048821 28 dbSNP
rs766991422 31 dbSNP
rs1290701747 36 dbSNP
rs1216076876 39 dbSNP
rs1454422881 43 dbSNP
rs970328964 45 dbSNP
rs756944123 50 dbSNP
rs953972681 52 dbSNP
rs753871679 68 dbSNP
rs1401891842 76 dbSNP
rs1285766761 82 dbSNP
rs1408049429 83 dbSNP
rs1029565948 86 dbSNP
rs1366043954 90 dbSNP
rs1218163680 97 dbSNP
rs184814826 98 dbSNP
rs1027222532 111 dbSNP
rs1318400925 114 dbSNP
rs995548862 117 dbSNP
rs1285121356 121 dbSNP
rs747679667 122 dbSNP
rs138750964 137 dbSNP
rs998137036 140 dbSNP
rs547975213 150 dbSNP
rs1185738009 151 dbSNP
rs1477636753 167 dbSNP
rs1462066820 168 dbSNP
rs747801774 169 dbSNP
rs542859509 174 dbSNP
rs1421167664 177 dbSNP
rs893941875 183 dbSNP
rs1285037296 186 dbSNP
rs1008286434 189 dbSNP
rs1239588374 197 dbSNP
rs1351341983 203 dbSNP
rs1436361742 208 dbSNP
rs778463239 213 dbSNP
rs1279683986 214 dbSNP
rs1374866573 220 dbSNP
rs1237239832 223 dbSNP
rs1055281754 224 dbSNP
rs1317084042 226 dbSNP
rs17167331 231 dbSNP
rs1049576729 236 dbSNP
rs996616238 239 dbSNP
rs906775698 240 dbSNP
rs1205120279 242 dbSNP
rs903818762 246 dbSNP
rs1046720666 247 dbSNP
rs1176800500 249 dbSNP
rs1043615857 251 dbSNP
rs1432424227 256 dbSNP
rs749053957 263 dbSNP
rs1317009026 265 dbSNP
rs1412055644 270 dbSNP
rs1405360334 271 dbSNP
rs17167328 273 dbSNP
rs1037161444 275 dbSNP
rs1443968210 287 dbSNP
rs941139063 290 dbSNP
rs1166038757 302 dbSNP
rs1282271236 304 dbSNP
rs1445816139 308 dbSNP
rs772782206 308 dbSNP
rs1355370793 309 dbSNP
rs1413482939 310 dbSNP
rs909651545 315 dbSNP
rs985302229 317 dbSNP
rs953918055 327 dbSNP
rs1315941888 331 dbSNP
rs1180543501 339 dbSNP
rs1056634887 359 dbSNP
rs939087266 360 dbSNP
rs926349527 361 dbSNP
rs568521410 368 dbSNP
rs539001624 370 dbSNP
rs980292412 372 dbSNP
rs1169406139 373 dbSNP
rs571341453 382 dbSNP
rs1406156368 383 dbSNP
rs922482956 389 dbSNP
rs556154532 392 dbSNP
rs537720195 396 dbSNP
rs554790169 397 dbSNP
rs756041374 407 dbSNP
rs567228175 414 dbSNP
rs1339455809 416 dbSNP
rs750419342 417 dbSNP
rs974310627 419 dbSNP
rs1276053414 421 dbSNP
rs781229493 423 dbSNP
rs1323584795 427 dbSNP
rs549122995 432 dbSNP
rs1398641584 438 dbSNP
rs762667339 440 dbSNP
rs143049667 444 dbSNP
rs1433309564 445 dbSNP
rs1357691020 450 dbSNP
rs1442021043 458 dbSNP
rs1175587661 471 dbSNP
rs1470360452 473 dbSNP
rs1265771543 474 dbSNP
rs1431474598 475 dbSNP
rs765335372 480 dbSNP
rs1476759838 483 dbSNP
rs1418709217 489 dbSNP
rs1186953421 490 dbSNP
rs1470678335 506 dbSNP
rs759536141 509 dbSNP
rs375018653 510 dbSNP
rs535100544 510 dbSNP
rs754638385 515 dbSNP
rs764718740 517 dbSNP
rs771107460 519 dbSNP
rs747072611 520 dbSNP
rs773329250 521 dbSNP
rs906704657 527 dbSNP
rs772280205 528 dbSNP
rs368197230 533 dbSNP
rs1296889530 535 dbSNP
rs1320109753 538 dbSNP
rs192757651 558 dbSNP
rs1399089420 560 dbSNP
rs993764134 564 dbSNP
rs186635260 565 dbSNP
rs1303271177 566 dbSNP
rs544228511 571 dbSNP
rs1028360885 574 dbSNP
rs896802604 577 dbSNP
rs532000486 579 dbSNP
rs941056623 580 dbSNP
rs149032639 589 dbSNP
rs1216272809 591 dbSNP
rs144868019 595 dbSNP
rs1420445503 602 dbSNP
rs572579152 606 dbSNP
rs779233809 609 dbSNP
rs1377374768 610 dbSNP
rs371219361 612 dbSNP
rs1160086898 614 dbSNP
rs749763318 618 dbSNP
rs780495092 620 dbSNP
rs1329473875 621 dbSNP
rs976614590 623 dbSNP
rs756735585 624 dbSNP
rs764234918 626 dbSNP
rs1171026631 627 dbSNP
rs751086924 632 dbSNP
rs763655405 635 dbSNP
rs758067925 643 dbSNP
rs1384987822 644 dbSNP
rs752495585 647 dbSNP
rs1281495771 648 dbSNP
rs765102676 651 dbSNP
rs1196262631 656 dbSNP
rs759587257 663 dbSNP
rs938999043 664 dbSNP
rs1227238555 667 dbSNP
rs776745515 671 dbSNP
rs766374648 697 dbSNP
rs760687685 698 dbSNP
rs765882316 704 dbSNP
rs1247165521 708 dbSNP
rs373257876 710 dbSNP
rs1307326372 714 dbSNP
rs1239919584 716 dbSNP
rs755571039 716 dbSNP
rs1397254778 720 dbSNP
rs1292930530 721 dbSNP
rs1298702609 725 dbSNP
rs1489787382 726 dbSNP
rs1463411567 728 dbSNP
rs958318932 734 dbSNP
rs1208573530 737 dbSNP
rs1267195553 741 dbSNP
rs772238587 745 dbSNP
rs1307878749 748 dbSNP
rs1044830381 749 dbSNP
rs1378128426 751 dbSNP
rs1438659652 753 dbSNP
rs1164032545 757 dbSNP
rs1369968951 757 dbSNP
rs1456393569 758 dbSNP
rs1292872877 760 dbSNP
rs1216377083 763 dbSNP
rs948866607 771 dbSNP
rs1033731071 779 dbSNP
rs1283351802 785 dbSNP
rs1353243363 786 dbSNP
rs980861940 786 dbSNP
rs970859039 790 dbSNP
rs565934423 809 dbSNP
rs1265390900 818 dbSNP
rs1367436016 829 dbSNP
rs776468277 834 dbSNP
rs554223409 840 dbSNP
rs1200025061 852 dbSNP
rs1235808329 857 dbSNP
rs940312270 861 dbSNP
rs545065353 864 dbSNP
rs34654406 866 dbSNP
rs898069721 871 dbSNP
rs116784199 872 dbSNP
rs556093019 877 dbSNP
rs1373607959 878 dbSNP
rs11538045 883 dbSNP
rs1028372296 885 dbSNP
rs975430540 886 dbSNP
rs537860424 895 dbSNP
rs1465105385 897 dbSNP
rs967873301 905 dbSNP
rs11538044 911 dbSNP
rs1381551958 911 dbSNP
rs1394685037 915 dbSNP
rs751201779 928 dbSNP
rs1327577795 931 dbSNP
rs1220992192 935 dbSNP
rs567215969 946 dbSNP
rs3208315 947 dbSNP
rs1203682424 949 dbSNP
rs888118067 951 dbSNP
rs1049461841 963 dbSNP
rs1200169103 966 dbSNP
rs932420537 971 dbSNP
rs1262149130 972 dbSNP
rs367784028 975 dbSNP
rs892407946 986 dbSNP
rs1422757513 996 dbSNP
rs900953707 1000 dbSNP
rs1432681728 1001 dbSNP
rs761147873 1001 dbSNP
rs371704342 1009 dbSNP
rs1464712423 1014 dbSNP
rs945246808 1019 dbSNP
rs913817223 1022 dbSNP
rs1480940126 1024 dbSNP
rs1257183524 1029 dbSNP
rs1196586269 1033 dbSNP
rs904827584 1034 dbSNP
rs989807301 1038 dbSNP
rs1302730034 1055 dbSNP
rs1325171842 1065 dbSNP
rs1263376900 1071 dbSNP
rs936654193 1072 dbSNP
rs1044853032 1079 dbSNP
rs926632142 1089 dbSNP
rs1489154027 1092 dbSNP
rs369268714 1093 dbSNP
rs1262424344 1097 dbSNP
rs1480704357 1110 dbSNP
rs552398594 1140 dbSNP
rs970785272 1141 dbSNP
rs1431730142 1148 dbSNP
rs1175632886 1156 dbSNP
rs199951766 1156 dbSNP
rs765751842 1183 dbSNP
rs1421927650 1189 dbSNP
rs1296701518 1192 dbSNP
rs1437783145 1194 dbSNP
rs1294842026 1200 dbSNP
rs1308577961 1203 dbSNP
rs1393616951 1211 dbSNP
rs1218066030 1214 dbSNP
rs972222348 1216 dbSNP
rs1355356988 1221 dbSNP
rs566587874 1226 dbSNP
rs1331085743 1231 dbSNP
rs1016481452 1232 dbSNP
rs56673597 1235 dbSNP
rs1408490707 1242 dbSNP
rs1173410844 1243 dbSNP
rs908826392 1249 dbSNP
rs987424916 1255 dbSNP
rs777316194 1256 dbSNP
rs11538046 1257 dbSNP
rs996497024 1258 dbSNP
rs1380066797 1267 dbSNP
rs1410031860 1267 dbSNP
rs570281799 1271 dbSNP
rs975483092 1273 dbSNP
rs968133410 1277 dbSNP
rs1022785462 1281 dbSNP
rs988033112 1289 dbSNP
rs1444105644 1292 dbSNP
rs771572978 1293 dbSNP
rs956740301 1297 dbSNP
rs539489935 1310 dbSNP
rs1034954415 1328 dbSNP
rs1243322029 1329 dbSNP
rs1287672805 1334 dbSNP
rs1199505576 1335 dbSNP
rs772651256 1341 dbSNP
rs140159854 1342 dbSNP
rs892302426 1343 dbSNP
rs370887184 1367 dbSNP
rs1223688843 1379 dbSNP
rs1261970198 1383 dbSNP
rs11538043 1386 dbSNP
rs550584492 1387 dbSNP
rs994485437 1389 dbSNP
rs1473340845 1393 dbSNP
rs1402024119 1396 dbSNP
rs1183919520 1410 dbSNP
rs1053682264 1412 dbSNP
rs1405267388 1415 dbSNP
rs898953434 1422 dbSNP
rs936604078 1435 dbSNP
rs1036512838 1436 dbSNP
rs926586982 1437 dbSNP
rs980756740 1438 dbSNP
rs1004393026 1439 dbSNP
rs1309182324 1446 dbSNP
rs1330284657 1448 dbSNP
rs1340651766 1477 dbSNP
rs949402076 1496 dbSNP
rs917964752 1497 dbSNP
rs1378416276 1503 dbSNP
rs1219156948 1504 dbSNP
rs972148910 1508 dbSNP
rs528941395 1509 dbSNP
rs761255441 1513 dbSNP
rs921504488 1526 dbSNP
rs1039703549 1531 dbSNP
rs1443181185 1533 dbSNP
rs946717863 1548 dbSNP
rs561604590 1549 dbSNP
rs1475204827 1550 dbSNP
rs984999787 1552 dbSNP
rs1426341018 1558 dbSNP
rs3836837 1559 dbSNP
rs953743618 1584 dbSNP
rs1029234693 1593 dbSNP
rs1290646527 1595 dbSNP
rs1420387310 1598 dbSNP
rs1379569985 1612 dbSNP
rs549445122 1613 dbSNP
rs1169294399 1625 dbSNP
rs1402521201 1628 dbSNP
rs1415803094 1636 dbSNP
rs1332017501 1640 dbSNP
rs1358359214 1641 dbSNP
rs147725001 1645 dbSNP
rs956570970 1658 dbSNP
rs560434162 1663 dbSNP
rs1446422371 1668 dbSNP
rs927756029 1690 dbSNP
rs1368797625 1693 dbSNP
rs1346050688 1702 dbSNP
rs549736227 1703 dbSNP
rs1440325624 1705 dbSNP
rs1474770626 1710 dbSNP
rs981926068 1712 dbSNP
rs965018084 1719 dbSNP
rs577679972 1721 dbSNP
rs529673020 1732 dbSNP
rs1191914967 1734 dbSNP
rs1377689037 1737 dbSNP
rs1216619906 1748 dbSNP
rs969316515 1749 dbSNP
rs768201886 1751 dbSNP
rs182079127 1757 dbSNP
rs1215041970 1767 dbSNP
rs1299771217 1771 dbSNP
rs1362297613 1773 dbSNP
rs994538017 1776 dbSNP
rs1317806298 1780 dbSNP
rs573994689 1798 dbSNP
rs1331758931 1800 dbSNP
rs892276965 1825 dbSNP
rs1285138180 1829 dbSNP
rs1244531307 1831 dbSNP
rs1338854242 1834 dbSNP
rs1054012549 1835 dbSNP
rs1298037315 1836 dbSNP
rs1000737364 1843 dbSNP
rs1014679353 1844 dbSNP
rs963338737 1844 dbSNP
rs746296753 1847 dbSNP
rs749008292 1848 dbSNP
rs1296466618 1850 dbSNP
rs1426470632 1851 dbSNP
rs1268590038 1853 dbSNP
rs779812155 1854 dbSNP
rs1196077111 1855 dbSNP
rs1045003782 1857 dbSNP
rs1005016667 1866 dbSNP
rs1374399157 1869 dbSNP
rs57066510 1872 dbSNP
rs1051234373 1878 dbSNP
rs1183347012 1891 dbSNP
rs1392732966 1893 dbSNP
rs1388627997 1898 dbSNP
rs1260397085 1906 dbSNP
rs1201026724 1910 dbSNP
rs1453771639 1911 dbSNP
rs745775552 1917 dbSNP
rs1468592545 1919 dbSNP
rs567776859 1920 dbSNP
rs917935159 1922 dbSNP
rs781011580 1925 dbSNP
rs1312008969 1926 dbSNP
rs1036423613 1927 dbSNP
rs757302952 1934 dbSNP
rs1351971298 1937 dbSNP
rs1238712756 1938 dbSNP
rs998292041 1943 dbSNP
rs1207599310 1946 dbSNP
rs1359037535 1946 dbSNP
rs1354712899 1953 dbSNP
rs940752610 1954 dbSNP
rs1180127578 1956 dbSNP
rs533802833 1966 dbSNP
rs540772354 1968 dbSNP
rs145528437 1980 dbSNP
rs1370165750 1992 dbSNP
rs1456309529 2001 dbSNP
rs527442254 2005 dbSNP
rs985355207 2006 dbSNP
rs1162950271 2016 dbSNP
rs1340207637 2017 dbSNP
rs1466150328 2019 dbSNP
rs557953055 2020 dbSNP
rs1276372375 2029 dbSNP
rs1333636490 2029 dbSNP
rs946749075 2031 dbSNP
rs375041456 2037 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6500.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 6500.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000353411.6 | 3UTR | UUUUUAUUUAUUUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000353411.6 | 3UTR | AAUUUUUAUUUAUUUAUUUAUUUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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