miRTarBase - #MIRT529825


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pre-miRNA Information
pre-miRNA hsa-mir-4283-1   
Genomic Coordinates chr7: 56955785 - 56955864
Description Homo sapiens miR-4283-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-4283-2   
Genomic Coordinates chr7: 63621090 - 63621169
Description Homo sapiens miR-4283-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4283
Sequence 11| UGGGGCUCAGCGAGUUU |27
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1465673533 6 dbSNP
rs1170916691 8 dbSNP
rs1318965636 9 dbSNP
rs1372440894 11 dbSNP
rs1268430213 11 dbSNP
rs1430450794 12 dbSNP
rs1480893789 12 dbSNP
rs1304625952 13 dbSNP
rs1451132774 17 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARGFX   
Synonyms -
Description arginine-fifty homeobox
Transcript NM_001012659   
Expression
Putative miRNA Targets on ARGFX
3'UTR of ARGFX
(miRNA target sites are highlighted)		 
>ARGFX|NM_001012659|3'UTR
   1 CCAGAGTACTAATAAATATAGATCATTTAGAAAAGTGGTCTTCTTGCCTCTTGTACATGACTGTTTTTTTCCTTTGTCTC
  81 ATTTTAACCCAACATCTGGGTCTGTGTCTCTGATTTCCATGTAAATGTTGCAAAAAGAGTTTTCCAAGTAGAGCTGGGCA
 161 CTACGTAATCAGCCCCACAAGTCTCCCTGAGAAGCCTGCCTAGTCCCTTTCATGGCCAATGAGACTCCAAAATTCCCTTC
 241 CCAAAACTATCTTGGATTTTCTAAAAGTAGGACAGTGGTTTTGGGGGTTATCCACTTTTATTTTTTTGAAACTAGCTCTC
 321 ATTCTGTCACCCAGGCTGGAATACAGTGGTACAGTCACGGCTCACAAAAGCCTTGACCTCCTGGGCTCAGGTGATCCTCC
 401 CACCTCAGCCTCCTGAGTAGCTAGGACTACAGATGCTCGCCACCACACCTGGCTAATTTTTTTTTTTTGAGACTGAGTCT
 481 CGCACTGTCACCCAGGGTGGAGTGCAGTGGCGGGATCTCAGCTCAGTGCAACCTCCACCTCCTGGGGTTCAAGTGATTCT
 561 CCTGTGTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCTGGCTAACTTTTGTATTTTTAGTAGAGAC
 641 GGGGTTTCACCACGTTGCCCAGGCTGGTCTTGAACTCCTGACCTCCAGTGATCCGCCTGCCTTGACCTCCCAAAGTGCTG
 721 GGATTACAGACATGAGCCACCGAGCCTGGCCAATTTTTGTGTTTTTTGTAGAGACGAGGTTTTGCCATGTTGCCCAGGCT
 801 GGTCTCCAACTCCTGGACTTAACGCCATCCACCTGCCACAGCCTCCCAAAGTGCTAGGAATACAGGAGTGCACCATCGCA
 881 CCCGGCTGGGTTATCTAGTTTAAAAACACTTTTTTTCAAGGAAACCGAAGAAACCATCATCCACTTTTCTCTCTGTATCA
 961 TTCTGATTTTAGTATATGTGTTGTGGAAGTGAGTACACTATCATCCACTTTTAATGACAGAAAGTTATAAACTTACATTT
1041 TGTTTCCAATTTTTCATTTTTTGTTTGTTATTTGTTTTTTGTAGACAGCACTCTGTCACCCAGGCTGGAGTGCAGTGGCA
1121 CCATCTTGGCTCACTGCAGCCTCTGCCTCCTGGGCTCAAACAGTCCTCCCACCTCAGCCTTCTGAGTAGCTGAGACTACA
1201 GACATGCGCCACCATGTCTGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCGCCTTGTTGCCCAGGCTGAATTTGG
1281 GTTTTTTTAAAATGAGACTTTCAGTCCTAATTTGAGGGGAAATTACTGTCACCACTAGTTTTAATATAGTACAATGAAAA
1361 AATAATATATATATATATAGTACAATGGTCCAGACATAATAAGAGGTGTAAAAACTATCACAGGAAGAAATAAAAACAGA
1441 TTTTTGAAGGTGAGATGATAAACTTGCAAAACTCACAAAATAAAGAGTCAAACTTTTAGAATGACAAGTTAGCATATTTT
1521 CCAGCCACATGATCAACCTACAAAATTAATACCATTTCTGAACACCAGTAATAAAGAAACATAAGGGCTGGGGGTGGTGG
1601 CTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCAGCCTGACTAA
1681 CATGGTGAAATCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAAAAAAAAGCCAGGCATGGTGGCACACACCTGTAATC
1761 CCAGCTACTCGGGAGGCTGAGGAAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGGTCGCACCACT
1841 GCACTCCAGCCTGGACAACAGAGCAAGACTCTGTCTCAAAAAAAAAATAAAAAATAAAAAATAAAAAATAAAAGAAACAT
1921 AAGATAAGTACCTCTCAATGAAAAATGTAAAAGTACCTAGAAATTCACAAAAAAATTAATACCTCTGTGGAGAAAACTTC
2001 AAAACTTAAAAAAGGACATAGAAAATGTTTTGAATAGGCCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACGTTGGGA
2081 GGCCAAGGCGGGCAGATCACGAGGTCAAGAGATCAAGACCATCCTGGCCAACATGGTGAAATCCTGCCTCTACTAAAAAT
2161 ACAAAAAAAAAAAAAAATTAGCTGGGCATGGTGGCACACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
2241 CACAAGGATTGAAACTATGCAGTGTGTTCTCCAAACATGATGGAACGAAATTAGAAATCAATAAAATTTGGGAAATTCAC
2321 AAATATGTGGATATTAAACAACACATTCCTAAATAACCAGTGGTTAAAGAGGTAATCACAGTCTGAGCAACATGGCAAAA
2401 CCCTGTGTCTACAAAAAATAAAAAATTAGCTGGGCATGACGGCCAGAGCCCATGGTCCCAGCTACTCGAGAGGCTGAGGT
2481 AAGAGCATCCCTTGAGCCACAGAGGTCGAGGCTGCAGTGAGCTGTGACTGTGCCACTGCACTCCAGCTTGAGCAACACAG
2561 TGATACTGTCTCAATAAATAAATAAATAGAAGAAATCATGAGTAAAATTGGAAAACACTTTTAACTGAAAAAAACAAAAG
2641 CACAACAAACCAAAACATGGGATGAAGCTAAATCAATGCTTAGAAGGAAATTTATAGCTTCAAATACTTATATACATATT
2721 TTTTAAAAGTAGCTTTACATAGGAAGGAAGTGGCATAGTTTTATCAATATCTGTCAAATTAAACTTCAAGGCAAAACTTT
2801 TTTATTGAGATGGAGTCTTGCTCTGTCACCCAGGCCGTGCAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTCAAATG
2881 ATTCTCCTGCTTTAGCCTCCCAAGTAGCTGGGACTACAGGTGTACGCCACCACACCCAGCTAATTTTTGTATTTTTAGTA
2961 GGGACAGGTTTTGCCATGTTGCCCAGGCTGGCCTCAAACTCCTGAGCTCAAGTGATCCTCCCGTCTCAGCCTCCCAAAGG
3041 GCTGAGATTACAGGTGTGAGCTACCTCACCTGGCCAAAACAGTTTTTTTAGAAATGAAGTATATTAGACAACAACAAAAG
3121 GAACAACTAACCTGAAATATATAATAACTTTGAACTTAAATATACTTAACAACATATACCAAAAATATATGAGGCAAATT
3201 TTAGCAAAAATTAAAATTCTTAAGAAAACTTCACTAATATATAGTCATAATGTGGTATATTCATAGAACATTCTCAATAA
3281 TTGATAATAACAGTCCAAAGAAAGCAGAAAGAAGGAAAGCCTAGAACAGAAATAAATGAAATAGAGAATAGAAAAGCAAT
3361 ACAGAAAAAAAATTATGAAATCAAAAGCTGGTTCTTTGAAAAGATCTACAAAATGGCAAACATTTAGCTAGATTGACCAC
3441 CCCCTCAAAAGACTCAAATTACTAGAATCAGAAACAAAAGTCAAGATTTTATTACCAAACTTATAGAAATAAAAATTATT
3521 AGAAAGAAATACTATGAACAATTGAATGCCAACAAATTAGATAAATGAAATGGACAAATTCCTAGGAAGACACAGAATAC
3601 CAAATCTGACTCCACAAGAAATAGATGTTGTGAATAGAGCTTGCTATGGTATGAATGTGTCCCCCACAGCTCATGCGTTG
3681 GAAACTTAATCCCCAAAGCAACAGCTTTGAGAGGTGAGACCTTTAAGGGTTACTAGGCAGAGCCCCCATGAATGGATTAA
3761 TGCCATTATTGTGGGAGTGGGTTAGTTATCTCAGAAGTGGGTTCCTGATAAAAGGATGAGTTCGGCCTTCTTCTTCCCCA
3841 AAATCTTTATCCCCACCCCCACCTCTATCTTTCTCTCTCTCTCTTACCTCCTCCTCTCCCTTCCTTCTGCCATGGGAGGA
3921 TGAAACATGAAGGCCCTGGCCAGGTGTGGCCCCTCCATCTTCCGTCTGAGACTGGAAGACTTCCCAGCCTTCAGAACTGT
4001 AAGAAATAAATCTCTCTTCATA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuUGA-GCGACUCGGGGu 5'
            |||  || ||||||| 
Target 5' ttACTAGGCAGAGCCCCc 3'
 3730 - 3747 151.00 -16.20
2 
miRNA  3' uuUGAGCGACUCGGGgu 5'
            |||| ||||||:|  
Target 5' aaACTC-CTGAGCTCaa 3'
 2996 - 3011 126.00 -18.40
3 
miRNA  3' uuUGAGCGACUCGGGgu 5'
            ||   | ||||||  
Target 5' tgACGGCCAGAGCCCat 3'
 2437 - 2453 123.00 -11.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31502328 5 COSMIC
COSN20086423 18 COSMIC
COSN30495456 25 COSMIC
COSN30182190 31 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs531424959 2 dbSNP
rs541978803 3 dbSNP
rs1487866088 5 dbSNP
rs1273522958 6 dbSNP
rs895216104 7 dbSNP
rs1167371380 14 dbSNP
rs1418950269 20 dbSNP
rs1461813691 25 dbSNP
rs753978095 26 dbSNP
rs1320186823 29 dbSNP
rs1012315731 30 dbSNP
rs1399218445 39 dbSNP
rs1408508188 39 dbSNP
rs759730195 51 dbSNP
rs1308096193 53 dbSNP
rs1025078444 56 dbSNP
rs1413912906 57 dbSNP
rs1170729915 58 dbSNP
rs971605406 58 dbSNP
rs1194121510 64 dbSNP
rs1374975686 72 dbSNP
rs1474579522 73 dbSNP
rs1167400612 77 dbSNP
rs1376214881 78 dbSNP
rs1437047348 79 dbSNP
rs1311601531 93 dbSNP
rs562116526 94 dbSNP
rs1187597287 95 dbSNP
rs1447311890 99 dbSNP
rs1244561803 107 dbSNP
rs1203764112 119 dbSNP
rs1032004515 121 dbSNP
rs1277198020 123 dbSNP
rs1198038313 132 dbSNP
rs1340557129 148 dbSNP
rs1297351289 150 dbSNP
rs956017457 151 dbSNP
rs1385269827 159 dbSNP
rs527905713 162 dbSNP
rs989761011 165 dbSNP
rs914214970 166 dbSNP
rs964359498 167 dbSNP
rs1411572226 176 dbSNP
rs115045570 181 dbSNP
rs1224860906 188 dbSNP
rs923025305 190 dbSNP
rs1427513243 196 dbSNP
rs116595666 199 dbSNP
rs1472199820 208 dbSNP
rs1212874607 218 dbSNP
rs1235217199 225 dbSNP
rs1183283602 226 dbSNP
rs35191130 227 dbSNP
rs1047924761 230 dbSNP
rs1278145039 231 dbSNP
rs1274465599 235 dbSNP
rs550926826 243 dbSNP
rs1205484888 248 dbSNP
rs1292864989 251 dbSNP
rs1263661895 288 dbSNP
rs1281375179 293 dbSNP
rs1445496601 300 dbSNP
rs1188167733 301 dbSNP
rs1351042802 314 dbSNP
rs1293958938 319 dbSNP
rs1307279648 325 dbSNP
rs908105140 331 dbSNP
rs942318653 335 dbSNP
rs764981363 339 dbSNP
rs1037978820 347 dbSNP
rs1159798546 350 dbSNP
rs1472600091 354 dbSNP
rs185446877 355 dbSNP
rs527616510 356 dbSNP
rs1490954591 357 dbSNP
rs758077073 359 dbSNP
rs1221236078 360 dbSNP
rs1320179287 364 dbSNP
rs1286528595 375 dbSNP
rs1290984675 377 dbSNP
rs1328564032 380 dbSNP
rs1287686172 388 dbSNP
rs145628833 397 dbSNP
rs1380112489 404 dbSNP
rs567396833 407 dbSNP
rs1347266697 411 dbSNP
rs1293925620 413 dbSNP
rs1319500347 415 dbSNP
rs1435406999 418 dbSNP
rs773650702 430 dbSNP
rs1371046002 435 dbSNP
rs1006598708 439 dbSNP
rs535539215 440 dbSNP
rs1457374161 446 dbSNP
rs1410544996 448 dbSNP
rs1157651888 451 dbSNP
rs1317834270 457 dbSNP
rs547211551 457 dbSNP
rs796330697 457 dbSNP
rs1190989484 460 dbSNP
rs555471165 462 dbSNP
rs1487679102 463 dbSNP
rs1244117472 470 dbSNP
rs536402689 471 dbSNP
rs1464537685 474 dbSNP
rs1300693130 482 dbSNP
rs1003112315 483 dbSNP
rs1313884865 484 dbSNP
rs1031532554 485 dbSNP
rs1218486960 489 dbSNP
rs1239768564 491 dbSNP
rs1271610504 491 dbSNP
rs187960668 497 dbSNP
rs1011419702 507 dbSNP
rs1484776224 512 dbSNP
rs534000435 513 dbSNP
rs1360266752 515 dbSNP
rs964307020 525 dbSNP
rs868862348 528 dbSNP
rs1422064244 536 dbSNP
rs866062718 551 dbSNP
rs746740813 560 dbSNP
rs1449122532 565 dbSNP
rs1030485397 568 dbSNP
rs954512036 579 dbSNP
rs759134915 585 dbSNP
rs1191802604 591 dbSNP
rs1266832941 596 dbSNP
rs1310272140 597 dbSNP
rs550019702 598 dbSNP
rs1228819457 602 dbSNP
rs984004342 609 dbSNP
rs1294877213 611 dbSNP
rs1454174531 612 dbSNP
rs1379263614 623 dbSNP
rs908014506 624 dbSNP
rs1161919553 627 dbSNP
rs942191519 633 dbSNP
rs1169626426 640 dbSNP
rs1362374862 641 dbSNP
rs1457074164 642 dbSNP
rs1166155496 643 dbSNP
rs973619353 645 dbSNP
rs577063745 654 dbSNP
rs1442726532 655 dbSNP
rs1323308605 665 dbSNP
rs1366300487 668 dbSNP
rs1391835614 669 dbSNP
rs1180142286 673 dbSNP
rs1309083114 677 dbSNP
rs1482254655 687 dbSNP
rs1276607260 693 dbSNP
rs1314867531 695 dbSNP
rs546159713 696 dbSNP
rs1482055139 705 dbSNP
rs1341183721 711 dbSNP
rs948034469 716 dbSNP
rs1046468537 732 dbSNP
rs1273633561 733 dbSNP
rs1337206625 743 dbSNP
rs1311424462 746 dbSNP
rs570101859 754 dbSNP
rs1264871934 756 dbSNP
rs1481013647 776 dbSNP
rs371788576 777 dbSNP
rs1248997107 788 dbSNP
rs1165760388 789 dbSNP
rs576132032 795 dbSNP
rs1472580092 811 dbSNP
rs1189082617 815 dbSNP
rs1162778745 816 dbSNP
rs1420562292 819 dbSNP
rs1462636485 825 dbSNP
rs1162279549 830 dbSNP
rs900782309 832 dbSNP
rs781270838 836 dbSNP
rs1211367259 840 dbSNP
rs1356614377 847 dbSNP
rs1264435584 860 dbSNP
rs1299421979 869 dbSNP
rs1242051593 870 dbSNP
rs1348528185 878 dbSNP
rs192964034 879 dbSNP
rs541917401 885 dbSNP
rs561834778 887 dbSNP
rs769735766 889 dbSNP
rs891592931 890 dbSNP
rs1011366010 891 dbSNP
rs1291990637 896 dbSNP
rs1458951284 898 dbSNP
rs1412762862 902 dbSNP
rs1159887624 906 dbSNP
rs1409195961 910 dbSNP
rs1293673236 919 dbSNP
rs1409615369 922 dbSNP
rs527843083 926 dbSNP
rs1231620383 928 dbSNP
rs1266284138 934 dbSNP
rs900459461 935 dbSNP
rs1465909975 937 dbSNP
rs147748191 940 dbSNP
rs1327739709 974 dbSNP
rs995783079 992 dbSNP
rs373874014 994 dbSNP
rs1330851775 997 dbSNP
rs1308343526 998 dbSNP
rs1206692271 999 dbSNP
rs1249751615 1003 dbSNP
rs1437527232 1019 dbSNP
rs1483014640 1030 dbSNP
rs1389575404 1032 dbSNP
rs11711973 1034 dbSNP
rs1259981793 1035 dbSNP
rs749500523 1035 dbSNP
rs1382764800 1037 dbSNP
rs1257592978 1046 dbSNP
rs114502094 1050 dbSNP
rs543121842 1060 dbSNP
rs973609306 1062 dbSNP
rs1428796020 1063 dbSNP
rs1248216227 1064 dbSNP
rs1171886394 1065 dbSNP
rs916827627 1068 dbSNP
rs969657798 1071 dbSNP
rs1201521367 1112 dbSNP
rs1313422105 1122 dbSNP
rs1156778345 1126 dbSNP
rs1344816879 1128 dbSNP
rs982502908 1142 dbSNP
rs927964012 1145 dbSNP
rs141916184 1147 dbSNP
rs559017347 1148 dbSNP
rs774713082 1152 dbSNP
rs1297117182 1163 dbSNP
rs1283433945 1170 dbSNP
rs1342340119 1180 dbSNP
rs1336157787 1189 dbSNP
rs1414985631 1204 dbSNP
rs1401327774 1205 dbSNP
rs1362908563 1208 dbSNP
rs1431349757 1209 dbSNP
rs1390453538 1215 dbSNP
rs1052491169 1216 dbSNP
rs1474177870 1219 dbSNP
rs569693388 1234 dbSNP
rs1187561829 1243 dbSNP
rs1341565933 1247 dbSNP
rs1254634000 1248 dbSNP
rs1235603730 1256 dbSNP
rs529271939 1257 dbSNP
rs947213430 1258 dbSNP
rs1484998147 1260 dbSNP
rs1358667337 1262 dbSNP
rs1209823267 1265 dbSNP
rs1284859807 1267 dbSNP
rs1243112720 1268 dbSNP
rs1042898092 1278 dbSNP
rs549175694 1282 dbSNP
rs11712050 1283 dbSNP
rs1052131049 1289 dbSNP
rs996023533 1289 dbSNP
rs1387723769 1290 dbSNP
rs1407869494 1303 dbSNP
rs1448372131 1303 dbSNP
rs890096860 1304 dbSNP
rs760236800 1313 dbSNP
rs1004959444 1316 dbSNP
rs1014674849 1321 dbSNP
rs1184968468 1334 dbSNP
rs1333260777 1336 dbSNP
rs1345571837 1338 dbSNP
rs534850968 1347 dbSNP
rs1203373815 1354 dbSNP
rs963159317 1356 dbSNP
rs1290799757 1357 dbSNP
rs1227860627 1365 dbSNP
rs1230134586 1365 dbSNP
rs3044706 1365 dbSNP
rs35713310 1365 dbSNP
rs397708087 1365 dbSNP
rs796512702 1365 dbSNP
rs201864700 1366 dbSNP
rs200632755 1367 dbSNP
rs969563314 1373 dbSNP
rs1439696643 1381 dbSNP
rs1351312787 1386 dbSNP
rs1323775583 1387 dbSNP
rs982351384 1389 dbSNP
rs1364492848 1398 dbSNP
rs928208145 1400 dbSNP
rs956728109 1401 dbSNP
rs1235069957 1407 dbSNP
rs1411823255 1420 dbSNP
rs1175872661 1431 dbSNP
rs988580835 1446 dbSNP
rs1221104095 1447 dbSNP
rs1467240678 1456 dbSNP
rs1270102492 1457 dbSNP
rs1343474885 1464 dbSNP
rs1219226777 1467 dbSNP
rs1329805040 1477 dbSNP
rs200036693 1484 dbSNP
rs1319119050 1488 dbSNP
rs946824149 1494 dbSNP
rs1275136111 1495 dbSNP
rs1245786296 1500 dbSNP
rs775834260 1502 dbSNP
rs1193701227 1503 dbSNP
rs1457264443 1504 dbSNP
rs1254410993 1508 dbSNP
rs1416581211 1516 dbSNP
rs1426292961 1525 dbSNP
rs1190915876 1528 dbSNP
rs1452809946 1555 dbSNP
rs1250086383 1559 dbSNP
rs1189354979 1562 dbSNP
rs1464479234 1566 dbSNP
rs1476963776 1566 dbSNP
rs921738415 1569 dbSNP
rs1213546490 1573 dbSNP
rs931818110 1582 dbSNP
rs374449236 1593 dbSNP
rs1233244375 1594 dbSNP
rs890409632 1596 dbSNP
rs1435237958 1602 dbSNP
rs1363819933 1604 dbSNP
rs1156729293 1606 dbSNP
rs1468038947 1607 dbSNP
rs1388149797 1619 dbSNP
rs36106917 1623 dbSNP
rs1441987655 1624 dbSNP
rs575006229 1634 dbSNP
rs1329421467 1635 dbSNP
rs570694235 1639 dbSNP
rs539719823 1640 dbSNP
rs1375930647 1643 dbSNP
rs1226919014 1644 dbSNP
rs1267959115 1645 dbSNP
rs1328045037 1650 dbSNP
rs1213936666 1651 dbSNP
rs950873036 1655 dbSNP
rs1291334013 1658 dbSNP
rs1345431198 1663 dbSNP
rs1449404230 1664 dbSNP
rs1198039730 1665 dbSNP
rs1276415130 1667 dbSNP
rs1228662979 1669 dbSNP
rs1233352042 1670 dbSNP
rs1471145536 1672 dbSNP
rs1179729412 1674 dbSNP
rs1411042700 1677 dbSNP
rs1462100344 1679 dbSNP
rs1308957645 1683 dbSNP
rs1429354985 1684 dbSNP
rs1167386973 1689 dbSNP
rs1371514878 1691 dbSNP
rs1388607729 1692 dbSNP
rs1404871212 1695 dbSNP
rs144196638 1696 dbSNP
rs1338035653 1697 dbSNP
rs1484600555 1701 dbSNP
rs1253721971 1704 dbSNP
rs1408610884 1709 dbSNP
rs1357263497 1710 dbSNP
rs12171301 1711 dbSNP
rs1249206474 1711 dbSNP
rs1005020490 1712 dbSNP
rs1309053139 1712 dbSNP
rs1321792591 1712 dbSNP
rs1391134800 1712 dbSNP
rs1394667798 1712 dbSNP
rs756800220 1712 dbSNP
rs1288047843 1714 dbSNP
rs1313785638 1717 dbSNP
rs1356523030 1719 dbSNP
rs111644352 1720 dbSNP
rs1233473569 1722 dbSNP
rs898898534 1726 dbSNP
rs1349356535 1730 dbSNP
rs1162807572 1731 dbSNP
rs1285629718 1731 dbSNP
rs1414038866 1732 dbSNP
rs1474185893 1732 dbSNP
rs1353874111 1733 dbSNP
rs1208699632 1734 dbSNP
rs1273163537 1735 dbSNP
rs1483990880 1736 dbSNP
rs555238207 1741 dbSNP
rs1211255383 1743 dbSNP
rs1016352290 1744 dbSNP
rs1488571229 1746 dbSNP
rs963786445 1748 dbSNP
rs1271996688 1750 dbSNP
rs994565680 1751 dbSNP
rs1475425066 1752 dbSNP
rs1023403210 1754 dbSNP
rs867991388 1759 dbSNP
rs1303751916 1761 dbSNP
rs753762101 1771 dbSNP
rs1472625776 1772 dbSNP
rs1324003062 1780 dbSNP
rs969504854 1792 dbSNP
rs1004158542 1798 dbSNP
rs1159040988 1802 dbSNP
rs1452869147 1805 dbSNP
rs1428319802 1811 dbSNP
rs1035269817 1818 dbSNP
rs1376407826 1821 dbSNP
rs1251938112 1826 dbSNP
rs1416980853 1833 dbSNP
rs1332660357 1834 dbSNP
rs1205045459 1836 dbSNP
rs1349088124 1837 dbSNP
rs1258138130 1838 dbSNP
rs957204976 1842 dbSNP
rs988139390 1844 dbSNP
rs576070786 1845 dbSNP
rs1338327073 1847 dbSNP
rs1243704897 1850 dbSNP
rs1022227716 1856 dbSNP
rs1366009972 1862 dbSNP
rs1343699153 1865 dbSNP
rs1317659740 1867 dbSNP
rs1381589677 1878 dbSNP
rs1382649555 1878 dbSNP
rs57481564 1878 dbSNP
rs968032222 1878 dbSNP
rs1435081311 1882 dbSNP
rs558514315 1882 dbSNP
rs565659039 1882 dbSNP
rs772237416 1882 dbSNP
rs201179558 1883 dbSNP
rs759553365 1883 dbSNP
rs1273868043 1888 dbSNP
rs535454449 1889 dbSNP
rs555125139 1892 dbSNP
rs556616116 1892 dbSNP
rs1201432544 1896 dbSNP
rs1347568999 1896 dbSNP
rs1201949506 1897 dbSNP
rs1278535562 1903 dbSNP
rs1230908418 1906 dbSNP
rs1253899701 1909 dbSNP
rs1269710758 1910 dbSNP
rs1441990845 1910 dbSNP
rs1225276304 1915 dbSNP
rs975437203 1916 dbSNP
rs1336056988 1919 dbSNP
rs764399280 1919 dbSNP
rs1374612909 1921 dbSNP
rs1310786175 1927 dbSNP
rs1431257410 1928 dbSNP
rs1419741364 1929 dbSNP
rs1166829286 1932 dbSNP
rs1392044972 1939 dbSNP
rs1370741352 1940 dbSNP
rs1447762687 1942 dbSNP
rs1189259682 1943 dbSNP
rs1209703137 1948 dbSNP
rs184248326 1954 dbSNP
rs1396183378 1958 dbSNP
rs987745875 1964 dbSNP
rs540811346 1965 dbSNP
rs1272535481 1969 dbSNP
rs1212924167 1975 dbSNP
rs940628771 1977 dbSNP
rs564688039 1978 dbSNP
rs1036299611 1983 dbSNP
rs1233836140 1993 dbSNP
rs1354664051 1999 dbSNP
rs1291244292 2015 dbSNP
rs898803898 2018 dbSNP
rs930297701 2021 dbSNP
rs1044833609 2028 dbSNP
rs1327725576 2035 dbSNP
rs1407777671 2036 dbSNP
rs577844488 2037 dbSNP
rs1164929740 2039 dbSNP
rs1475187011 2042 dbSNP
rs1416271949 2046 dbSNP
rs1718353 2050 dbSNP
rs1470699871 2052 dbSNP
rs1232591152 2058 dbSNP
rs1003701071 2059 dbSNP
rs1453486166 2061 dbSNP
rs1432224583 2074 dbSNP
rs1035619237 2075 dbSNP
rs892651614 2076 dbSNP
rs1010202001 2078 dbSNP
rs1373779567 2087 dbSNP
rs867360115 2090 dbSNP
rs757239572 2091 dbSNP
rs1022508710 2092 dbSNP
rs1460448822 2094 dbSNP
rs564700064 2101 dbSNP
rs563656311 2102 dbSNP
rs188205049 2103 dbSNP
rs543999521 2108 dbSNP
rs1407734164 2113 dbSNP
rs1028357835 2115 dbSNP
rs1479145729 2117 dbSNP
rs1250096400 2128 dbSNP
rs529203580 2130 dbSNP
rs1467165325 2132 dbSNP
rs1251132702 2133 dbSNP
rs1217842671 2144 dbSNP
rs1187985075 2145 dbSNP
rs1253784246 2148 dbSNP
rs1435359940 2154 dbSNP
rs1174594784 2155 dbSNP
rs1377378572 2159 dbSNP
rs1221812298 2160 dbSNP
rs916551463 2161 dbSNP
rs1157401626 2163 dbSNP
rs1345072768 2163 dbSNP
rs1432119370 2163 dbSNP
rs1439610269 2163 dbSNP
rs34783142 2163 dbSNP
rs397875505 2163 dbSNP
rs970679478 2163 dbSNP
rs1416497212 2167 dbSNP
rs955674568 2168 dbSNP
rs987304397 2173 dbSNP
rs61798088 2178 dbSNP
rs61798089 2180 dbSNP
rs1249994565 2182 dbSNP
rs1187146356 2184 dbSNP
rs911692092 2197 dbSNP
rs1160696709 2200 dbSNP
rs1213438432 2201 dbSNP
rs1390356481 2205 dbSNP
rs1280672897 2207 dbSNP
rs1233128401 2208 dbSNP
rs201503811 2209 dbSNP
rs1297137671 2211 dbSNP
rs6790254 2220 dbSNP
rs1371107854 2233 dbSNP
rs1388393451 2234 dbSNP
rs1299143218 2241 dbSNP
rs1330488102 2242 dbSNP
rs1450713332 2247 dbSNP
rs1376427079 2260 dbSNP
rs1312586907 2261 dbSNP
rs1433094827 2263 dbSNP
rs1239470235 2270 dbSNP
rs1392206389 2273 dbSNP
rs1171286792 2277 dbSNP
rs1427966174 2282 dbSNP
rs1269846339 2285 dbSNP
rs559527798 2287 dbSNP
rs1184694218 2288 dbSNP
rs1476114138 2289 dbSNP
rs147781703 2297 dbSNP
rs1208354018 2298 dbSNP
rs1257972286 2311 dbSNP
rs1209843371 2315 dbSNP
rs1484497223 2333 dbSNP
rs1252678152 2334 dbSNP
rs1306410238 2340 dbSNP
rs971941200 2340 dbSNP
rs1294126045 2343 dbSNP
rs1273831625 2345 dbSNP
rs1356585793 2358 dbSNP
rs1293090004 2364 dbSNP
rs1413301188 2375 dbSNP
rs1489520716 2385 dbSNP
rs1189945837 2391 dbSNP
rs551610136 2409 dbSNP
rs920549490 2413 dbSNP
rs930287749 2414 dbSNP
rs570630123 2420 dbSNP
rs1352851495 2427 dbSNP
rs904922637 2432 dbSNP
rs1476165731 2438 dbSNP
rs140176733 2441 dbSNP
rs374864009 2442 dbSNP
rs1157991744 2449 dbSNP
rs764677577 2452 dbSNP
rs1252311757 2460 dbSNP
rs1177408849 2468 dbSNP
rs192396038 2469 dbSNP
rs1249115285 2491 dbSNP
rs1214967672 2497 dbSNP
rs1009691497 2498 dbSNP
rs749911298 2509 dbSNP
rs569971059 2525 dbSNP
rs1231921775 2529 dbSNP
rs1022503536 2538 dbSNP
rs904148694 2539 dbSNP
rs535430865 2544 dbSNP
rs1371407624 2547 dbSNP
rs754021439 2550 dbSNP
rs762700978 2555 dbSNP
rs1462007733 2558 dbSNP
rs996791260 2565 dbSNP
rs1291333120 2566 dbSNP
rs1389904348 2573 dbSNP
rs778513914 2573 dbSNP
rs1365333661 2586 dbSNP
rs570735 2589 dbSNP
rs570732 2592 dbSNP
rs1418177910 2598 dbSNP
rs184729641 2601 dbSNP
rs1289916727 2602 dbSNP
rs766114369 2622 dbSNP
rs1252992928 2626 dbSNP
rs1212381780 2632 dbSNP
rs1348418238 2634 dbSNP
rs1261714619 2635 dbSNP
rs1227966630 2640 dbSNP
rs1315402125 2656 dbSNP
rs1470458432 2658 dbSNP
rs1441819069 2659 dbSNP
rs188788703 2667 dbSNP
rs1323905357 2669 dbSNP
rs1385009943 2674 dbSNP
rs150330332 2675 dbSNP
rs1158952395 2680 dbSNP
rs1219437562 2690 dbSNP
rs1361772797 2697 dbSNP
rs1264997560 2704 dbSNP
rs1481207747 2712 dbSNP
rs1015686954 2720 dbSNP
rs1250003086 2723 dbSNP
rs1449257475 2725 dbSNP
rs1263019718 2726 dbSNP
rs1204954507 2729 dbSNP
rs962182468 2733 dbSNP
rs1282802265 2743 dbSNP
rs1235311161 2753 dbSNP
rs1347341464 2755 dbSNP
rs1301380424 2757 dbSNP
rs1229639905 2759 dbSNP
rs1328177875 2763 dbSNP
rs1318886264 2775 dbSNP
rs971924830 2779 dbSNP
rs1358406332 2785 dbSNP
rs1472485470 2786 dbSNP
rs920497003 2791 dbSNP
rs951964853 2796 dbSNP
rs980700958 2797 dbSNP
rs1476089914 2800 dbSNP
rs754788478 2810 dbSNP
rs926252390 2822 dbSNP
rs1427193571 2824 dbSNP
rs1260057648 2826 dbSNP
rs1414039470 2829 dbSNP
rs1211993215 2833 dbSNP
rs1485479678 2835 dbSNP
rs758689732 2837 dbSNP
rs1162081000 2838 dbSNP
rs939036582 2847 dbSNP
rs1269610440 2848 dbSNP
rs780477469 2849 dbSNP
rs747059654 2857 dbSNP
rs768894886 2858 dbSNP
rs781361051 2861 dbSNP
rs748557274 2862 dbSNP
rs1226611557 2864 dbSNP
rs565384323 2870 dbSNP
rs11386339 2874 dbSNP
rs397830159 2874 dbSNP
rs770350511 2878 dbSNP
rs1374518034 2881 dbSNP
rs773386248 2881 dbSNP
rs763375241 2882 dbSNP
rs771702739 2886 dbSNP
rs1430268165 2897 dbSNP
rs1056575188 2902 dbSNP
rs527601919 2913 dbSNP
rs1309802319 2916 dbSNP
rs945543071 2918 dbSNP
rs1043902961 2919 dbSNP
rs199633068 2926 dbSNP
rs543619530 2927 dbSNP
rs760150624 2931 dbSNP
rs1236005438 2934 dbSNP
rs1184267536 2950 dbSNP
rs563585166 2953 dbSNP
rs1312024332 2962 dbSNP
rs1272423232 2965 dbSNP
rs752595509 2967 dbSNP
rs1194104906 2980 dbSNP
rs756035666 2984 dbSNP
rs1274941536 2991 dbSNP
rs1308176093 3008 dbSNP
rs7638024 3014 dbSNP
rs749305905 3015 dbSNP
rs1483042219 3023 dbSNP
rs542985910 3024 dbSNP
rs1327629030 3025 dbSNP
rs1443907590 3028 dbSNP
rs1397370183 3029 dbSNP
rs1166270509 3030 dbSNP
rs1461328427 3031 dbSNP
rs35654921 3032 dbSNP
rs1412084210 3033 dbSNP
rs1239642823 3041 dbSNP
rs1160617383 3043 dbSNP
rs1470650168 3060 dbSNP
rs1483988662 3063 dbSNP
rs1179774105 3064 dbSNP
rs1176899607 3069 dbSNP
rs1469877242 3071 dbSNP
rs561238551 3083 dbSNP
rs961482640 3083 dbSNP
rs1027465221 3084 dbSNP
rs771203670 3090 dbSNP
rs559677627 3106 dbSNP
rs544689966 3113 dbSNP
rs1351004759 3118 dbSNP
rs1328236048 3121 dbSNP
rs1278558562 3125 dbSNP
rs1237408090 3128 dbSNP
rs951870319 3132 dbSNP
rs1169983160 3141 dbSNP
rs980647199 3162 dbSNP
rs1440862709 3163 dbSNP
rs926561044 3167 dbSNP
rs80017115 3171 dbSNP
rs1176519609 3173 dbSNP
rs1407620871 3175 dbSNP
rs1157065157 3178 dbSNP
rs1455698947 3180 dbSNP
rs991875192 3189 dbSNP
rs1446028817 3200 dbSNP
rs1302516412 3212 dbSNP
rs1395768337 3214 dbSNP
rs1193039870 3217 dbSNP
rs1488129168 3231 dbSNP
rs1244889008 3234 dbSNP
rs1366248252 3237 dbSNP
rs1447358935 3244 dbSNP
rs913630512 3246 dbSNP
rs1349551016 3254 dbSNP
rs1303534903 3255 dbSNP
rs1232902762 3259 dbSNP
rs945153833 3261 dbSNP
rs1043475422 3288 dbSNP
rs181700331 3294 dbSNP
rs925427383 3295 dbSNP
rs1444978950 3299 dbSNP
rs1235669212 3309 dbSNP
rs1436846272 3316 dbSNP
rs1376236373 3345 dbSNP
rs1431479212 3347 dbSNP
rs565385730 3351 dbSNP
rs1188186803 3358 dbSNP
rs1475663369 3362 dbSNP
rs1214118024 3365 dbSNP
rs1281101225 3365 dbSNP
rs1050394081 3369 dbSNP
rs1207541559 3371 dbSNP
rs1309924328 3399 dbSNP
rs866632625 3405 dbSNP
rs1215669173 3415 dbSNP
rs1340404798 3417 dbSNP
rs1008630649 3422 dbSNP
rs1037058149 3434 dbSNP
rs149925874 3436 dbSNP
rs1356382359 3437 dbSNP
rs897176776 3443 dbSNP
rs1464658803 3445 dbSNP
rs1356360204 3452 dbSNP
rs1189925751 3457 dbSNP
rs1410487336 3465 dbSNP
rs995560374 3470 dbSNP
rs751463849 3475 dbSNP
rs533116322 3496 dbSNP
rs1476065116 3503 dbSNP
rs1257863407 3520 dbSNP
rs1180940954 3540 dbSNP
rs1252584273 3543 dbSNP
rs1204543695 3545 dbSNP
rs1317883913 3557 dbSNP
rs1245740012 3560 dbSNP
rs1256680392 3566 dbSNP
rs1235601970 3591 dbSNP
rs1027076460 3614 dbSNP
rs887569683 3625 dbSNP
rs1448725582 3627 dbSNP
rs1394542533 3629 dbSNP
rs1191723279 3640 dbSNP
rs1298869571 3641 dbSNP
rs1441529673 3650 dbSNP
rs761584944 3677 dbSNP
rs6783657 3678 dbSNP
rs1175153457 3682 dbSNP
rs1462899179 3702 dbSNP
rs1418308471 3707 dbSNP
rs992219018 3709 dbSNP
rs1020597018 3715 dbSNP
rs1389634761 3719 dbSNP
rs1252198853 3720 dbSNP
rs1177313927 3724 dbSNP
rs966362967 3730 dbSNP
rs569909623 3746 dbSNP
rs1469273463 3753 dbSNP
rs750229831 3767 dbSNP
rs1318544109 3778 dbSNP
rs1243042256 3800 dbSNP
rs1318997466 3802 dbSNP
rs1364561533 3807 dbSNP
rs761118731 3808 dbSNP
rs1239593452 3818 dbSNP
rs1437752440 3823 dbSNP
rs758316496 3824 dbSNP
rs925038041 3825 dbSNP
rs932820517 3827 dbSNP
rs1391301238 3828 dbSNP
rs559817250 3829 dbSNP
rs1292774248 3832 dbSNP
rs1456166814 3835 dbSNP
rs1365249426 3840 dbSNP
rs1159363152 3847 dbSNP
rs769141563 3856 dbSNP
rs985673843 3862 dbSNP
rs1329421047 3865 dbSNP
rs1210216334 3867 dbSNP
rs1265641553 3868 dbSNP
rs944279570 3869 dbSNP
rs1464073678 3871 dbSNP
rs550236411 3872 dbSNP
rs1037702522 3876 dbSNP
rs1248361235 3878 dbSNP
rs1305742266 3884 dbSNP
rs1235082262 3887 dbSNP
rs897122386 3900 dbSNP
rs149089777 3904 dbSNP
rs1384919550 3923 dbSNP
rs1386886826 3928 dbSNP
rs1298512282 3934 dbSNP
rs1412436408 3945 dbSNP
rs1048506202 3949 dbSNP
rs1175021661 3950 dbSNP
rs1454330012 3953 dbSNP
rs1377618184 3954 dbSNP
rs905979221 3956 dbSNP
rs1157250183 3958 dbSNP
rs1262909441 3961 dbSNP
rs1002435039 3963 dbSNP
rs780391430 3964 dbSNP
rs1487456539 3965 dbSNP
rs1211768898 3973 dbSNP
rs762546061 3977 dbSNP
rs1254264018 3980 dbSNP
rs1230981553 3981 dbSNP
rs896330149 3985 dbSNP
rs751790260 3989 dbSNP
rs1399132783 4008 dbSNP
rs1436483577 4013 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 503582.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760583. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_A PAR-CLIP data was present in SRX1760632. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_C PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A PAR-CLIP data was present in SRX1760641. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_B PAR-CLIP data was present in SRX1760591. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuugagcgacucGGGGu 5'
                      |||| 
Target 5' ------------CCCCa 3'
 		1 - 5
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000334384.3 | 3UTR | CCCAUGAAUGGAUUAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000334384.3 | 3UTR | CCCAUGAAUGGAUUAAUGCCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
53 hsa-miR-4283 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT083347 E2F1 E2F transcription factor 1 2 4
MIRT120466 U2SURP U2 snRNP associated SURP domain containing 2 4
MIRT266892 HDGF heparin binding growth factor 2 2
MIRT445166 TFPI tissue factor pathway inhibitor 2 2
MIRT445906 SLC10A3 solute carrier family 10 member 3 2 2
MIRT455530 GJB1 gap junction protein beta 1 2 2
MIRT460172 UNK unkempt family zinc finger 2 6
MIRT461728 SLC27A1 solute carrier family 27 member 1 2 2
MIRT465219 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT468911 RPS6KA4 ribosomal protein S6 kinase A4 2 2
MIRT469691 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT471050 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT472526 NACC1 nucleus accumbens associated 1 2 2
MIRT474932 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT486980 STEAP3 STEAP3 metalloreductase 2 4
MIRT487483 BANP BTG3 associated nuclear protein 2 4
MIRT488263 HSP90AB1 heat shock protein 90 alpha family class B member 1 2 8
MIRT490733 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT490896 BARHL1 BarH like homeobox 1 2 6
MIRT490909 STRN4 striatin 4 2 2
MIRT493812 FSCN1 fascin actin-bundling protein 1 2 2
MIRT509030 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT509049 AKAP2 A-kinase anchoring protein 2 2 2
MIRT509404 MCM7 minichromosome maintenance complex component 7 2 6
MIRT523303 HIST1H1B histone cluster 1 H1 family member b 2 2
MIRT529487 TPD52L3 tumor protein D52 like 3 2 2
MIRT529825 ARGFX arginine-fifty homeobox 2 4
MIRT542941 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT543668 PUM1 pumilio RNA binding family member 1 2 4
MIRT546994 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT560377 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT561752 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT568966 CACNA1C calcium voltage-gated channel subunit alpha1 C 2 2
MIRT569892 ROBO4 roundabout guidance receptor 4 2 2
MIRT570097 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT576503 Slc35e2 solute carrier family 35, member E2 2 3
MIRT623795 GK5 glycerol kinase 5 (putative) 2 2
MIRT625142 ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 2 2
MIRT631438 HSPA14 heat shock protein family A (Hsp70) member 14 2 2
MIRT633973 SLC35E2 solute carrier family 35 member E2 2 3
MIRT634811 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT640520 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT644446 ALDOC aldolase, fructose-bisphosphate C 2 2
MIRT644767 TXNRD3NB thioredoxin reductase 3 neighbor 2 2
MIRT648809 ZNF689 zinc finger protein 689 2 2
MIRT654912 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT670832 SFT2D2 SFT2 domain containing 2 2 2
MIRT675826 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT684020 FOLR1 folate receptor 1 2 2
MIRT698589 TEX261 testis expressed 261 2 2
MIRT703208 GOLGA3 golgin A3 2 2
MIRT703492 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT710754 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4283 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4283 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)

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