pre-miRNA Information
pre-miRNA hsa-mir-6778   
Genomic Coordinates chr17: 18340814 - 18340886
Description Homo sapiens miR-6778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6778-3p
Sequence 53| UGCCUCCCUGACAUUCCACAG |73
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
740690 16 ClinVar
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1353338387 1 dbSNP
rs764805351 4 dbSNP
rs1433279807 7 dbSNP
rs753581059 8 dbSNP
rs1196874854 9 dbSNP
rs763775853 13 dbSNP
rs377036954 16 dbSNP
rs1195047122 17 dbSNP
rs1038276042 19 dbSNP
rs952170969 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TNFAIP8L1   
Synonyms TIPE1
Description TNF alpha induced protein 8 like 1
Transcript NM_001167942   
Other Transcripts NM_152362   
Expression
Putative miRNA Targets on TNFAIP8L1
3'UTR of TNFAIP8L1
(miRNA target sites are highlighted)
>TNFAIP8L1|NM_001167942|3'UTR
   1 ACCCCGGCGCCGCCCAACCGCGCCCCTCGCGCCTTTTGGGGCTCTCCTGCTGGGCGCGGGTGGGGTTTGTGGGTTTTTTT
  81 CCACCTCTTTTCTCCCAATCGGACTCCGGCCAAACTCCCCTAGACAGATGGGTGACCTGTCTCCTTTGAGAGGATGCTGA
 161 GGCATCTGTAGCAGCTGTTTCAAACACCAATGTCACCTCTCCTCCTGGCCCCCGCCCAATGGGGAGAGGAATTTGGGGCC
 241 CTACTCTGGGGACCACCTTTCACCCGTTTGTACTTTCTGGGCCACGCCGACCCCTGGGTCGCTTGATGTAAAAGCCAAAA
 321 GCTGCTGCCTCCCACTTGGATCATGTCGCCTGGGATTTTCATCCCTCGCACAAGGACTACGGGTTCACACGGTGAACTGG
 401 GGGAAGGGAAGTGTTAGGGGGCAAGTCGCGGCACCCCCCCTTCCATAAACTCACGTCCTAACCCCCAGGACCTCAGAAGA
 481 TGATCTGATTTGGAAATAGGATCATTACAGATGGAATTAGTTCAGATGATCTCATCTTGGAGTAGGGTGGGCCCCAATTC
 561 AAGGACTGGGGTCCTTAAAAAAAGGGGGCCTGGGGCAGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGC
 641 TGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTGAAAATACA
 721 AAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGATAATCACTTGAACCAG
 801 GAGGAGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAA
 881 GAAGCGGGGGAGTGGGGGATTGAGGCCACGTGCAGTGGCTCACTACTCTAATTCCAGCACTTTGGGAGGCCGAGGCAGGA
 961 AGATTGCTTGAACTCAGAAGTTCAAGACCAGTCTGGGCAACATGGTGAGACCCTCGTCTCTACAAAAAAAAAATTATCGT
1041 GGTGGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACAAGGTCAAGAGA
1121 TCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGTTGCGTGCC
1201 TGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGCAGGTTGCAGGGAGGCGGAGGTT
1281 GCAGTGAGCCGAGATTGCACCACTGCACTTCAGCCTGGTGACAGAGCGAGACTCGTCTCAAAAAAAAAAAAAAAAAAAAA
1361 AAAAAAAGTGACTGTGGTGGTGCACACGTATAATCCCAGCTACTTGAGAGATGACGAGGGAAGATCACTTGAGCCCAGGA
1441 GTTAAGAGGCTGCAGTGACCGATGATCATGCCACTGCACTCCAGCTTGGGTGAGAGTGGGACTCTGTCTTAGAAAGAAAA
1521 AAAAAAGTATTTGGACACAGACATGCATGCAAGGAAGGCCAATGATGCCGGCCACCACCAGGAGCTGGGAGAGGCCCAGG
1601 GCAGATCCCCTTCAGCCTTGGAGGGACCTAGCCCTGGCCACACCTTCATCTCAGACTTGCGGCCCAGAGAACTGAATGAG
1681 AATAAATGTGCGTGAAGCCCCTCAGTCCACAGGATGTGGTACTGGAAGCCCCCACTCAAGAAGGCTCCAGTGAATGCTGG
1761 CACGTTCAGCCAGGATGCCTCCGTGAAGCTGGAGACCTCTGCCCTGGGTCGGGAGGGGAAACTGCTCCAATCCAGGGACT
1841 GCCACATGGGAGGGGACGGAGCGTGCCCACCTCCCAGGGGTGAGGGGGGACCCACCTGAGATGTGTGCACATTTTATTTA
1921 TTTATTGTTTTGAGACAAAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGTGAAATCTCGGCTCATTGCAGCCCCTT
2001 CCTTCCAGGCTCAAGTGATCCTCCCACCTCAGCCCCGGGTAGCTGGGACTACAGGTGTGCACGAGCACACCCGGCTAATC
2081 TTTGTATTTTTTGTAGACAGAAGGTCTCACCATGTTGCCCAGGATGGTCTCGAACTCCTGGGCTCAAGCGACCTACCTAC
2161 CTCGGCCTCACAAAGTGTGCACATTGTAATATCGTGATTTCATATTTGGAGAATCAGCAACCAACCAGCCAACCATGTTG
2241 CTTTTATAAGACAGAGCTGAGAAAGCAAAGCTTGGCTGTCGTCTTGGCTCTGGTACCACCCACGAGATGCGGGCGATTCT
2321 CAGCTCAGGGCGTGGAGGCGTGGTGTGGGGGAGTCTATTTGCCATTTTTGTTTGTCAGCAGGGGGCAGGGGTTCTCAAAG
2401 ATTGCAAAATGCTGCTGCAGGTCAGGAAGGTTATTTTGGGTGCCTGTGGGGGAGGTGAAACAAGGTCCCATGACTGTTTT
2481 GCAGAACCTTGTCTGTGGAGGGTAGAGGTTGCGGCAGGGGCCTGTGGGCCTTACTTGGTGAGAAGGTAGGTCTAGCTGGC
2561 TCCATTCAGTATTTGAGACATTTGGAATTTGTCTGCATTTAAAACCAAGAGATCACACACACCTGTCTGGATTTGGAGTT
2641 TCTCTTGAAAACTCGCCAGTCCGGCCGTCTGAGCCTGCACTGACGCCTGGTGAAGCTGTGCAGGGGCCGCCCCTCTCCCT
2721 TTCACCACAGTCCTCTCCACTCCCTTTCGCCTCTCCCTGGCCTGCTGCACTCACTGATAGGAAATTCTGACCCCAGACTC
2801 GGAGCAGCCTTCCCGTGGTTCGGTTTTTGCTTCCGCGAAAAAGCCAAAGGCCTTGGCCAGAGAGCCAGCTGTTCCTACCT
2881 CTACCCCACGCTTCCAAGGCAACCTTCTCCACTTATCTTAGGCCGAGAGACAGCTCTTCAAGAACGTACATGGATCCTGA
2961 TTTTCTCACGAAGTCCCGATGGAACCCTGTGCTGTTGAGACATCAGTGTGTAAAACTCTCTGTGTCCCTGTTGGGCTGTC
3041 CAGACAGTCTGGACTCTTGTAAATTTGAGATTTAATTAAAGGAAACAAACCAAATAGGACTGCGGAACAATTTAAATAAA
3121 AGCACACACCAGCCTGGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacacCUUACAGUCCCUCCGu 5'
               |: || ||||||||| 
Target 5' gcgcaGGTTG-CAGGGAGGCg 3'
1255 - 1274 155.00 -22.00
2
miRNA  3' gacACCUUACAGU-------CCCUCCGu 5'
             || |||  ||       ||||||| 
Target 5' accTGTAATCCCAGCACTTTGGGAGGCt 3'
1065 - 1092 146.00 -14.46
3
miRNA  3' gacaccuuacAGUCCCUCCGu 5'
                    |: ||||||| 
Target 5' attccagcacTTTGGGAGGCc 3'
931 - 951 143.00 -12.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19406074 23 COSMIC
COSN26573495 214 COSMIC
COSN15010278 224 COSMIC
COSN30138827 275 COSMIC
COSN31583078 301 COSMIC
COSN30175720 329 COSMIC
COSN22406178 368 COSMIC
COSN26567197 381 COSMIC
COSN31514733 392 COSMIC
COSN30112566 455 COSMIC
COSN24037538 473 COSMIC
COSN31489690 505 COSMIC
COSN30174397 524 COSMIC
COSN31533063 584 COSMIC
COSN8261118 584 COSMIC
COSN26571675 598 COSMIC
COSN26505463 603 COSMIC
COSN26582481 604 COSMIC
COSN30161478 647 COSMIC
COSN30129848 648 COSMIC
COSN25852800 666 COSMIC
COSN31519235 728 COSMIC
COSN8605988 746 COSMIC
COSN30526956 769 COSMIC
COSN505792 811 COSMIC
COSN30118753 912 COSMIC
COSN28770190 929 COSMIC
COSN26648881 934 COSMIC
COSN15626753 946 COSMIC
COSN30127442 946 COSMIC
COSN31531157 973 COSMIC
COSN28803224 979 COSMIC
COSN30120070 1048 COSMIC
COSN21673225 1137 COSMIC
COSN31932930 1259 COSMIC
COSN24645896 1699 COSMIC
COSN16465191 2079 COSMIC
COSN26121773 2312 COSMIC
COSN19295049 2877 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1162870531 3 dbSNP
rs1347165867 4 dbSNP
rs531789103 8 dbSNP
rs1288344304 9 dbSNP
rs1359213198 11 dbSNP
rs779515578 12 dbSNP
rs542350343 13 dbSNP
rs1483751324 14 dbSNP
rs1480218878 18 dbSNP
rs988784929 20 dbSNP
rs1226952662 21 dbSNP
rs562205943 22 dbSNP
rs529897740 23 dbSNP
rs1261568577 26 dbSNP
rs915435391 29 dbSNP
rs1258380715 30 dbSNP
rs1486627550 31 dbSNP
rs546508030 32 dbSNP
rs1264429633 37 dbSNP
rs747318018 43 dbSNP
rs1484599030 45 dbSNP
rs945678754 55 dbSNP
rs776403010 57 dbSNP
rs566746029 59 dbSNP
rs1474381565 65 dbSNP
rs926676618 66 dbSNP
rs1432770164 74 dbSNP
rs1469380895 74 dbSNP
rs569352885 74 dbSNP
rs939358271 74 dbSNP
rs933083136 75 dbSNP
rs1056369579 81 dbSNP
rs897750338 87 dbSNP
rs1007165569 89 dbSNP
rs1323424000 90 dbSNP
rs1397161009 98 dbSNP
rs532320919 99 dbSNP
rs551727332 101 dbSNP
rs994202012 102 dbSNP
rs1025647986 108 dbSNP
rs1049434870 109 dbSNP
rs1325266840 119 dbSNP
rs568516751 126 dbSNP
rs1007768439 130 dbSNP
rs1361451995 132 dbSNP
rs1315647402 133 dbSNP
rs1270885029 135 dbSNP
rs981535486 137 dbSNP
rs1355680521 138 dbSNP
rs1017365652 145 dbSNP
rs1331054446 147 dbSNP
rs1392152221 161 dbSNP
rs1396108075 162 dbSNP
rs1386333290 163 dbSNP
rs537507312 163 dbSNP
rs1163521671 165 dbSNP
rs914455511 166 dbSNP
rs945961486 171 dbSNP
rs977098861 172 dbSNP
rs1250654015 176 dbSNP
rs878879350 186 dbSNP
rs1202675879 191 dbSNP
rs148604930 192 dbSNP
rs965760765 196 dbSNP
rs1275214232 198 dbSNP
rs1469652749 199 dbSNP
rs1292297598 200 dbSNP
rs922945488 208 dbSNP
rs1214165081 209 dbSNP
rs933095946 209 dbSNP
rs142984070 210 dbSNP
rs1239892658 214 dbSNP
rs1335358167 217 dbSNP
rs568089403 220 dbSNP
rs1031369882 221 dbSNP
rs955879489 230 dbSNP
rs1407086545 247 dbSNP
rs1366569268 251 dbSNP
rs889952260 259 dbSNP
rs747430094 262 dbSNP
rs867365895 267 dbSNP
rs1195195872 268 dbSNP
rs988449979 272 dbSNP
rs942809673 275 dbSNP
rs1159752062 279 dbSNP
rs915470262 286 dbSNP
rs1373176071 289 dbSNP
rs1038536242 290 dbSNP
rs968252732 293 dbSNP
rs1179548885 304 dbSNP
rs898787554 316 dbSNP
rs1269299447 317 dbSNP
rs1220622130 328 dbSNP
rs1449750164 335 dbSNP
rs1286300265 341 dbSNP
rs994402335 343 dbSNP
rs28564725 345 dbSNP
rs117764185 348 dbSNP
rs1225579432 349 dbSNP
rs752000605 352 dbSNP
rs1419665812 365 dbSNP
rs189850581 366 dbSNP
rs1282984390 368 dbSNP
rs1434798782 369 dbSNP
rs1347392560 373 dbSNP
rs1003389742 375 dbSNP
rs1060555 381 dbSNP
rs958794654 382 dbSNP
rs1011398615 385 dbSNP
rs1429586637 387 dbSNP
rs746107100 391 dbSNP
rs1476922077 392 dbSNP
rs1243720538 397 dbSNP
rs1384451723 399 dbSNP
rs1464440551 401 dbSNP
rs1266291230 404 dbSNP
rs1021413724 412 dbSNP
rs1324486889 428 dbSNP
rs1319501836 430 dbSNP
rs929297913 431 dbSNP
rs967293451 434 dbSNP
rs977297060 434 dbSNP
rs1339954806 435 dbSNP
rs922944230 436 dbSNP
rs954363021 438 dbSNP
rs1470689539 439 dbSNP
rs1231454612 440 dbSNP
rs1412461459 441 dbSNP
rs1295195425 442 dbSNP
rs1335797547 446 dbSNP
rs1049008282 456 dbSNP
rs1227987929 463 dbSNP
rs1185421109 468 dbSNP
rs910334247 471 dbSNP
rs1208273823 475 dbSNP
rs1259961351 475 dbSNP
rs768145508 476 dbSNP
rs1348221975 479 dbSNP
rs887648828 484 dbSNP
rs1340613966 501 dbSNP
rs1262262316 509 dbSNP
rs1317785976 510 dbSNP
rs1485301989 512 dbSNP
rs1038571732 517 dbSNP
rs1379249708 521 dbSNP
rs920077874 522 dbSNP
rs930223848 534 dbSNP
rs943200148 538 dbSNP
rs1170829582 539 dbSNP
rs1428873978 545 dbSNP
rs1038855675 546 dbSNP
rs901662406 548 dbSNP
rs1258979774 549 dbSNP
rs1445231699 568 dbSNP
rs1255515774 570 dbSNP
rs1180238873 577 dbSNP
rs181793641 578 dbSNP
rs1031834742 584 dbSNP
rs1056191777 586 dbSNP
rs1294479918 588 dbSNP
rs891494778 589 dbSNP
rs542293010 593 dbSNP
rs1455616125 598 dbSNP
rs769855706 602 dbSNP
rs1011625039 603 dbSNP
rs376761474 604 dbSNP
rs141421167 605 dbSNP
rs1308275406 612 dbSNP
rs968682484 614 dbSNP
rs1413456404 615 dbSNP
rs527820341 628 dbSNP
rs1425194486 631 dbSNP
rs1033839855 636 dbSNP
rs1162727088 638 dbSNP
rs1420964030 639 dbSNP
rs1408918559 640 dbSNP
rs186595311 645 dbSNP
rs560112506 647 dbSNP
rs992244588 648 dbSNP
rs1223755170 650 dbSNP
rs113311345 651 dbSNP
rs1261083356 652 dbSNP
rs1218667217 658 dbSNP
rs1347123591 659 dbSNP
rs982592698 663 dbSNP
rs999179985 665 dbSNP
rs1208600534 666 dbSNP
rs552064009 672 dbSNP
rs1284902848 673 dbSNP
rs568854285 675 dbSNP
rs1387171866 680 dbSNP
rs1485684814 687 dbSNP
rs1176279886 690 dbSNP
rs190560850 692 dbSNP
rs985170328 693 dbSNP
rs183587050 704 dbSNP
rs1377399831 711 dbSNP
rs1433439007 713 dbSNP
rs143839515 722 dbSNP
rs963152760 736 dbSNP
rs973120181 737 dbSNP
rs1038950117 738 dbSNP
rs1486500480 751 dbSNP
rs901716098 756 dbSNP
rs1375875246 760 dbSNP
rs930091306 769 dbSNP
rs1264625554 774 dbSNP
rs933131673 777 dbSNP
rs1052882042 783 dbSNP
rs1047771663 786 dbSNP
rs891500144 787 dbSNP
rs1232017085 792 dbSNP
rs1365904846 798 dbSNP
rs1319917199 815 dbSNP
rs1305459513 823 dbSNP
rs1011260340 824 dbSNP
rs533671572 828 dbSNP
rs1249095256 831 dbSNP
rs1481437841 832 dbSNP
rs905525023 833 dbSNP
rs572478317 841 dbSNP
rs1173047171 842 dbSNP
rs1033892381 843 dbSNP
rs894470629 848 dbSNP
rs1196064974 849 dbSNP
rs1187315729 850 dbSNP
rs1463173401 853 dbSNP
rs1244512024 856 dbSNP
rs947489777 857 dbSNP
rs754131158 862 dbSNP
rs992703765 864 dbSNP
rs1229372003 865 dbSNP
rs1342738952 866 dbSNP
rs112877986 867 dbSNP
rs998731107 868 dbSNP
rs950830950 869 dbSNP
rs984877151 870 dbSNP
rs909226469 883 dbSNP
rs1007876316 885 dbSNP
rs1356325607 886 dbSNP
rs72620519 887 dbSNP
rs1390040437 891 dbSNP
rs974691237 895 dbSNP
rs540077883 905 dbSNP
rs188721849 906 dbSNP
rs111777530 910 dbSNP
rs771786256 911 dbSNP
rs780106333 926 dbSNP
rs4806994 929 dbSNP
rs950440743 933 dbSNP
rs1213895351 944 dbSNP
rs866939306 945 dbSNP
rs374587016 952 dbSNP
rs1361561182 953 dbSNP
rs1284801055 955 dbSNP
rs1042795459 956 dbSNP
rs1308700119 964 dbSNP
rs113650575 965 dbSNP
rs9783964 979 dbSNP
rs1466858607 985 dbSNP
rs1331148816 990 dbSNP
rs1410732901 991 dbSNP
rs911538198 993 dbSNP
rs1306613622 1003 dbSNP
rs1216006014 1010 dbSNP
rs1253998694 1012 dbSNP
rs938977351 1017 dbSNP
rs1185251313 1019 dbSNP
rs771057903 1021 dbSNP
rs1366262036 1022 dbSNP
rs915932192 1024 dbSNP
rs947354159 1024 dbSNP
rs1429136691 1032 dbSNP
rs116388380 1035 dbSNP
rs1209252987 1038 dbSNP
rs1416046650 1039 dbSNP
rs1463194952 1040 dbSNP
rs1350160004 1041 dbSNP
rs1286793765 1046 dbSNP
rs868691614 1049 dbSNP
rs1051633422 1050 dbSNP
rs1429967034 1053 dbSNP
rs1286990801 1054 dbSNP
rs1160807022 1064 dbSNP
rs1457394890 1066 dbSNP
rs560255124 1070 dbSNP
rs140499998 1093 dbSNP
rs545621054 1098 dbSNP
rs1292118136 1099 dbSNP
rs1017492999 1103 dbSNP
rs1198077524 1110 dbSNP
rs529460475 1117 dbSNP
rs549414841 1121 dbSNP
rs898841303 1122 dbSNP
rs150421539 1123 dbSNP
rs1025983533 1124 dbSNP
rs1368740965 1136 dbSNP
rs1274674075 1140 dbSNP
rs950520839 1144 dbSNP
rs1328730916 1145 dbSNP
rs1244269508 1147 dbSNP
rs1321919234 1154 dbSNP
rs1435187605 1155 dbSNP
rs1156487271 1157 dbSNP
rs1055314171 1168 dbSNP
rs1171837785 1171 dbSNP
rs547754702 1171 dbSNP
rs767762339 1172 dbSNP
rs1249854387 1173 dbSNP
rs569493376 1182 dbSNP
rs183290135 1183 dbSNP
rs760047615 1191 dbSNP
rs1246333461 1192 dbSNP
rs1414278454 1194 dbSNP
rs1212470344 1196 dbSNP
rs1013774712 1197 dbSNP
rs1399833189 1204 dbSNP
rs547165742 1206 dbSNP
rs1346956808 1209 dbSNP
rs1035878030 1213 dbSNP
rs558883177 1218 dbSNP
rs991705320 1222 dbSNP
rs1318007210 1236 dbSNP
rs1449742615 1237 dbSNP
rs916195730 1240 dbSNP
rs950901426 1241 dbSNP
rs753299592 1243 dbSNP
rs1412550976 1245 dbSNP
rs1169131111 1250 dbSNP
rs1293463967 1250 dbSNP
rs1016356013 1255 dbSNP
rs964710086 1257 dbSNP
rs1222489149 1259 dbSNP
rs570571696 1263 dbSNP
rs974707590 1274 dbSNP
rs538528978 1275 dbSNP
rs954587066 1276 dbSNP
rs988725369 1282 dbSNP
rs796788110 1285 dbSNP
rs1210752685 1286 dbSNP
rs1379364996 1287 dbSNP
rs1283253631 1291 dbSNP
rs913084134 1292 dbSNP
rs947231702 1302 dbSNP
rs111281567 1305 dbSNP
rs924599426 1310 dbSNP
rs1043236237 1315 dbSNP
rs934775150 1319 dbSNP
rs1424486939 1326 dbSNP
rs927004604 1328 dbSNP
rs1180330649 1329 dbSNP
rs550432542 1335 dbSNP
rs1232593580 1336 dbSNP
rs1204923191 1338 dbSNP
rs1223057678 1339 dbSNP
rs1231049803 1339 dbSNP
rs1288614363 1339 dbSNP
rs1321783298 1339 dbSNP
rs1351969097 1339 dbSNP
rs1482337709 1339 dbSNP
rs1491229813 1339 dbSNP
rs1181827261 1340 dbSNP
rs1211310787 1340 dbSNP
rs1227463374 1340 dbSNP
rs1264297164 1340 dbSNP
rs1268383495 1340 dbSNP
rs1269994375 1340 dbSNP
rs1314904317 1340 dbSNP
rs1318946566 1340 dbSNP
rs1330688681 1340 dbSNP
rs1349339906 1340 dbSNP
rs1376448201 1340 dbSNP
rs1413017395 1340 dbSNP
rs1458974801 1340 dbSNP
rs1471825384 1340 dbSNP
rs1488464561 1340 dbSNP
rs1491114163 1340 dbSNP
rs1491464616 1340 dbSNP
rs74173015 1340 dbSNP
rs1491279375 1341 dbSNP
rs1387258705 1368 dbSNP
rs1468789175 1369 dbSNP
rs1175315190 1370 dbSNP
rs1409850247 1371 dbSNP
rs1323928674 1373 dbSNP
rs1437372487 1374 dbSNP
rs1389586832 1378 dbSNP
rs937013035 1386 dbSNP
rs570333962 1388 dbSNP
rs895470027 1389 dbSNP
rs1379705577 1406 dbSNP
rs755903086 1414 dbSNP
rs765477848 1415 dbSNP
rs1177272138 1416 dbSNP
rs1373107046 1417 dbSNP
rs149147089 1439 dbSNP
rs1038880045 1447 dbSNP
rs1047969978 1453 dbSNP
rs886646392 1455 dbSNP
rs1248179442 1459 dbSNP
rs111329089 1460 dbSNP
rs1353619046 1461 dbSNP
rs1041838599 1462 dbSNP
rs866022167 1464 dbSNP
rs1281679352 1471 dbSNP
rs572358526 1473 dbSNP
rs996197025 1474 dbSNP
rs1301176514 1475 dbSNP
rs535060151 1498 dbSNP
rs1230601368 1502 dbSNP
rs994739184 1503 dbSNP
rs1320025234 1505 dbSNP
rs1301798038 1511 dbSNP
rs1047461187 1512 dbSNP
rs1350681502 1513 dbSNP
rs1211762571 1516 dbSNP
rs1303717567 1516 dbSNP
rs1171028674 1517 dbSNP
rs1465863429 1517 dbSNP
rs886078522 1517 dbSNP
rs1272350098 1518 dbSNP
rs557968205 1524 dbSNP
rs775441250 1526 dbSNP
rs1035145175 1528 dbSNP
rs954719252 1529 dbSNP
rs1426327275 1537 dbSNP
rs58132873 1544 dbSNP
rs1234419943 1546 dbSNP
rs1440017119 1549 dbSNP
rs1200762772 1561 dbSNP
rs1192935830 1563 dbSNP
rs913143376 1564 dbSNP
rs1023067913 1568 dbSNP
rs968957170 1570 dbSNP
rs1296913434 1571 dbSNP
rs1225337141 1588 dbSNP
rs545558005 1592 dbSNP
rs1455519580 1593 dbSNP
rs1172701116 1595 dbSNP
rs978954487 1597 dbSNP
rs1395733023 1601 dbSNP
rs978529598 1608 dbSNP
rs146327896 1611 dbSNP
rs1430899778 1616 dbSNP
rs937117680 1623 dbSNP
rs1407889607 1624 dbSNP
rs1330413206 1627 dbSNP
rs992526045 1629 dbSNP
rs916949110 1637 dbSNP
rs1401495970 1638 dbSNP
rs1187814371 1642 dbSNP
rs1474701771 1656 dbSNP
rs911999117 1657 dbSNP
rs541764687 1661 dbSNP
rs943432554 1662 dbSNP
rs1324290244 1677 dbSNP
rs1038909281 1687 dbSNP
rs1048451556 1691 dbSNP
rs886660074 1692 dbSNP
rs1269709890 1693 dbSNP
rs942205771 1701 dbSNP
rs1047657948 1702 dbSNP
rs1337479345 1711 dbSNP
rs562052586 1717 dbSNP
rs8110873 1722 dbSNP
rs754372488 1723 dbSNP
rs1273893357 1725 dbSNP
rs547395941 1734 dbSNP
rs1468199207 1738 dbSNP
rs1407643399 1745 dbSNP
rs1314509155 1758 dbSNP
rs1392225998 1764 dbSNP
rs1212896534 1765 dbSNP
rs138980142 1773 dbSNP
rs1056128225 1782 dbSNP
rs186504990 1783 dbSNP
rs1030411427 1792 dbSNP
rs1011935208 1795 dbSNP
rs1199437455 1797 dbSNP
rs1241038938 1799 dbSNP
rs1179532827 1800 dbSNP
rs1474106813 1801 dbSNP
rs59683989 1805 dbSNP
rs1023100459 1811 dbSNP
rs890490078 1812 dbSNP
rs1213176654 1813 dbSNP
rs968833943 1828 dbSNP
rs1270266883 1841 dbSNP
rs191436182 1845 dbSNP
rs1328902677 1846 dbSNP
rs1010196245 1853 dbSNP
rs1278189120 1854 dbSNP
rs750637576 1858 dbSNP
rs1000407400 1859 dbSNP
rs1032304760 1863 dbSNP
rs1323604536 1864 dbSNP
rs956308263 1866 dbSNP
rs1391719974 1867 dbSNP
rs1397094989 1868 dbSNP
rs1020626150 1872 dbSNP
rs1160914069 1875 dbSNP
rs1387886986 1876 dbSNP
rs968632885 1880 dbSNP
rs978634210 1888 dbSNP
rs1156614823 1890 dbSNP
rs1034177001 1895 dbSNP
rs1478945257 1897 dbSNP
rs1378141673 1901 dbSNP
rs1193026021 1907 dbSNP
rs1467184098 1908 dbSNP
rs531926083 1912 dbSNP
rs1245842337 1913 dbSNP
rs1282539961 1913 dbSNP
rs992578286 1913 dbSNP
rs1274760867 1917 dbSNP
rs570266394 1917 dbSNP
rs1232821902 1929 dbSNP
rs1368106817 1937 dbSNP
rs1322027424 1940 dbSNP
rs1435302410 1941 dbSNP
rs550319054 1942 dbSNP
rs549404434 1945 dbSNP
rs566412176 1946 dbSNP
rs1172934428 1949 dbSNP
rs1452548821 1959 dbSNP
rs983397616 1960 dbSNP
rs1189326074 1964 dbSNP
rs779690911 1965 dbSNP
rs908138376 1966 dbSNP
rs907820686 1971 dbSNP
rs942321558 1981 dbSNP
rs1212579910 1983 dbSNP
rs1037944304 1984 dbSNP
rs900704106 1990 dbSNP
rs1344963936 1992 dbSNP
rs1299125823 1997 dbSNP
rs1358140933 1999 dbSNP
rs1268033667 2008 dbSNP
rs747003484 2012 dbSNP
rs768504363 2017 dbSNP
rs894778917 2018 dbSNP
rs947824828 2022 dbSNP
rs1051850910 2032 dbSNP
rs1043417452 2037 dbSNP
rs184691844 2038 dbSNP
rs1169231813 2040 dbSNP
rs1010663338 2041 dbSNP
rs867547644 2043 dbSNP
rs781132634 2045 dbSNP
rs527849274 2048 dbSNP
rs904511370 2063 dbSNP
rs1000104733 2064 dbSNP
rs1031836870 2071 dbSNP
rs1034229172 2072 dbSNP
rs1204508332 2073 dbSNP
rs1275991160 2073 dbSNP
rs1009138936 2074 dbSNP
rs558147315 2079 dbSNP
rs958535385 2084 dbSNP
rs1229655213 2094 dbSNP
rs1355725384 2099 dbSNP
rs1458674582 2099 dbSNP
rs1292408423 2100 dbSNP
rs571750715 2103 dbSNP
rs1158346026 2104 dbSNP
rs1024488261 2105 dbSNP
rs1019377018 2107 dbSNP
rs1441434611 2112 dbSNP
rs951140169 2114 dbSNP
rs1167025229 2121 dbSNP
rs1383503715 2132 dbSNP
rs1402925290 2133 dbSNP
rs61739557 2135 dbSNP
rs1473769582 2141 dbSNP
rs537151423 2150 dbSNP
rs1027708954 2151 dbSNP
rs1479973230 2164 dbSNP
rs1230631631 2165 dbSNP
rs962362752 2176 dbSNP
rs1335005926 2177 dbSNP
rs555897343 2184 dbSNP
rs1413191384 2186 dbSNP
rs973689038 2193 dbSNP
rs575821186 2194 dbSNP
rs747672597 2195 dbSNP
rs1330907030 2203 dbSNP
rs907685998 2204 dbSNP
rs939276595 2205 dbSNP
rs61745632 2216 dbSNP
rs1441752609 2217 dbSNP
rs916249737 2218 dbSNP
rs1348505921 2221 dbSNP
rs1051908223 2222 dbSNP
rs1413135998 2233 dbSNP
rs773060112 2237 dbSNP
rs1417813863 2247 dbSNP
rs1286141034 2248 dbSNP
rs1192375009 2253 dbSNP
rs1427876377 2253 dbSNP
rs911979725 2258 dbSNP
rs1208288702 2259 dbSNP
rs554295622 2281 dbSNP
rs772530880 2282 dbSNP
rs935077715 2289 dbSNP
rs1181598595 2293 dbSNP
rs1238065980 2300 dbSNP
rs775748878 2301 dbSNP
rs1303302069 2303 dbSNP
rs75004743 2304 dbSNP
rs1159728357 2305 dbSNP
rs891935233 2309 dbSNP
rs1385990144 2310 dbSNP
rs1374939243 2311 dbSNP
rs572340965 2312 dbSNP
rs8110359 2316 dbSNP
rs1403243726 2319 dbSNP
rs1454257123 2327 dbSNP
rs1019157146 2330 dbSNP
rs1191236604 2332 dbSNP
rs1391011186 2333 dbSNP
rs1271248148 2335 dbSNP
rs74172655 2336 dbSNP
rs1014061550 2340 dbSNP
rs564094952 2341 dbSNP
rs1211480249 2344 dbSNP
rs1027636991 2347 dbSNP
rs951275713 2349 dbSNP
rs1003999057 2350 dbSNP
rs1327189904 2352 dbSNP
rs1242246255 2353 dbSNP
rs1017091699 2355 dbSNP
rs1380814446 2356 dbSNP
rs1381763917 2359 dbSNP
rs983524041 2365 dbSNP
rs1434597750 2369 dbSNP
rs1171134972 2371 dbSNP
rs45448392 2371 dbSNP
rs975039667 2373 dbSNP
rs867577088 2375 dbSNP
rs1463057019 2380 dbSNP
rs543552170 2383 dbSNP
rs1191986760 2384 dbSNP
rs960530801 2386 dbSNP
rs1257953499 2390 dbSNP
rs750692245 2391 dbSNP
rs953585036 2396 dbSNP
rs1485267674 2401 dbSNP
rs1278122881 2403 dbSNP
rs988118528 2405 dbSNP
rs1207284623 2420 dbSNP
rs1340153660 2430 dbSNP
rs1250875070 2431 dbSNP
rs1208174602 2434 dbSNP
rs912100583 2443 dbSNP
rs1323762270 2446 dbSNP
rs992492660 2447 dbSNP
rs563414299 2449 dbSNP
rs916530590 2450 dbSNP
rs1310383372 2470 dbSNP
rs946205670 2475 dbSNP
rs1392520616 2480 dbSNP
rs1483393972 2485 dbSNP
rs529462861 2491 dbSNP
rs1194830976 2499 dbSNP
rs1396564289 2504 dbSNP
rs1166833027 2508 dbSNP
rs1460117151 2510 dbSNP
rs1419580497 2512 dbSNP
rs1041810108 2513 dbSNP
rs139503502 2514 dbSNP
rs758513750 2516 dbSNP
rs936017553 2517 dbSNP
rs1438343829 2524 dbSNP
rs5826855 2529 dbSNP
rs1453096301 2530 dbSNP
rs924938311 2535 dbSNP
rs1175649788 2536 dbSNP
rs1055699220 2546 dbSNP
rs935088290 2549 dbSNP
rs894462740 2550 dbSNP
rs149678219 2551 dbSNP
rs1014200870 2556 dbSNP
rs1232974174 2558 dbSNP
rs1333109605 2568 dbSNP
rs1290650900 2569 dbSNP
rs1046052982 2574 dbSNP
rs1389195011 2580 dbSNP
rs1396113536 2581 dbSNP
rs1326168160 2584 dbSNP
rs886984463 2585 dbSNP
rs1052167412 2586 dbSNP
rs913394972 2606 dbSNP
rs1004412948 2608 dbSNP
rs1363168361 2612 dbSNP
rs1040557459 2614 dbSNP
rs1016689504 2620 dbSNP
rs898217008 2626 dbSNP
rs566206835 2637 dbSNP
rs528801862 2638 dbSNP
rs996415985 2652 dbSNP
rs1049102465 2654 dbSNP
rs766579675 2655 dbSNP
rs1231949216 2656 dbSNP
rs1302801280 2663 dbSNP
rs1312208947 2664 dbSNP
rs551439379 2665 dbSNP
rs1028013798 2668 dbSNP
rs955019458 2685 dbSNP
rs987782850 2686 dbSNP
rs1319970715 2691 dbSNP
rs1401059608 2708 dbSNP
rs1319548891 2709 dbSNP
rs1156710802 2710 dbSNP
rs1455569938 2711 dbSNP
rs776723419 2714 dbSNP
rs910566168 2715 dbSNP
rs1013459365 2716 dbSNP
rs1467551338 2717 dbSNP
rs1023406614 2719 dbSNP
rs1019576620 2724 dbSNP
rs3088098 2725 dbSNP
rs977964484 2726 dbSNP
rs979289933 2729 dbSNP
rs926059298 2738 dbSNP
rs936110860 2739 dbSNP
rs956363004 2741 dbSNP
rs1232942276 2744 dbSNP
rs991520442 2747 dbSNP
rs72620520 2749 dbSNP
rs1325616362 2750 dbSNP
rs1315986712 2752 dbSNP
rs1426123792 2757 dbSNP
rs1375997799 2768 dbSNP
rs1173023578 2769 dbSNP
rs943785189 2794 dbSNP
rs950090400 2801 dbSNP
rs187863788 2802 dbSNP
rs932239271 2803 dbSNP
rs1190514510 2805 dbSNP
rs1485769974 2810 dbSNP
rs748087558 2811 dbSNP
rs939881905 2815 dbSNP
rs567447464 2816 dbSNP
rs887782624 2820 dbSNP
rs1038183657 2822 dbSNP
rs755738044 2823 dbSNP
rs368932661 2824 dbSNP
rs534490825 2824 dbSNP
rs1381225558 2829 dbSNP
rs1312198508 2835 dbSNP
rs1292803166 2836 dbSNP
rs1319608513 2837 dbSNP
rs777390460 2838 dbSNP
rs1028076046 2840 dbSNP
rs535275996 2864 dbSNP
rs906509524 2868 dbSNP
rs555554668 2880 dbSNP
rs1167441353 2882 dbSNP
rs1013611951 2888 dbSNP
rs558674383 2890 dbSNP
rs1008276729 2895 dbSNP
rs1481915101 2904 dbSNP
rs1000741583 2913 dbSNP
rs1224441233 2917 dbSNP
rs1204644297 2919 dbSNP
rs1032188291 2924 dbSNP
rs774456066 2925 dbSNP
rs1184909842 2926 dbSNP
rs987866709 2927 dbSNP
rs968012543 2932 dbSNP
rs1226475285 2936 dbSNP
rs1375444648 2939 dbSNP
rs1478287647 2946 dbSNP
rs1298775006 2947 dbSNP
rs977684135 2951 dbSNP
rs1416909056 2953 dbSNP
rs1352880819 2955 dbSNP
rs1328170610 2957 dbSNP
rs1462220001 2967 dbSNP
rs965168851 2970 dbSNP
rs1403322063 2973 dbSNP
rs1158649087 2974 dbSNP
rs1033170047 2976 dbSNP
rs975133084 2978 dbSNP
rs1469153323 2979 dbSNP
rs1235896480 2981 dbSNP
rs193077506 2982 dbSNP
rs1394344861 2987 dbSNP
rs1215159277 2995 dbSNP
rs541324614 3003 dbSNP
rs957526761 3009 dbSNP
rs748768295 3011 dbSNP
rs1219142489 3016 dbSNP
rs558341092 3016 dbSNP
rs991572735 3020 dbSNP
rs1452939137 3021 dbSNP
rs932102071 3022 dbSNP
rs1223218323 3024 dbSNP
rs915955218 3032 dbSNP
rs950087115 3038 dbSNP
rs981818826 3043 dbSNP
rs908472592 3048 dbSNP
rs1400241783 3058 dbSNP
rs940921314 3059 dbSNP
rs1292100383 3062 dbSNP
rs1036393667 3066 dbSNP
rs571282318 3069 dbSNP
rs939954348 3070 dbSNP
rs1346200047 3072 dbSNP
rs896449558 3084 dbSNP
rs9789274 3088 dbSNP
rs1038278858 3096 dbSNP
rs28385470 3099 dbSNP
rs773999022 3104 dbSNP
rs12461453 3105 dbSNP
rs1486724180 3106 dbSNP
rs1214918307 3110 dbSNP
rs890843280 3118 dbSNP
rs1351428472 3131 dbSNP
rs1282514472 3135 dbSNP
rs1235147803 3137 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 126282.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714643. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacACCUUACAGU-------CCCUCCGu 5'
             || |:|  ||       ||||||| 
Target 5' gccUGUAGUCCCAGCUACUCGGGAGGCu 3'
6 - 33
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 126282.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM714643
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000327473.4 | 3UTR | CACAUGCCUGUAGUCCCAGCUACUCGGGAGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000327473.4 | 3UTR | UGCAGGGAGGCGGAGGUUGCAGUGAGCCGAGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000327473.4 | 3UTR | UGCAGGGAGGCGGAGGUUGCAGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000327473.4 | 3UTR | UGCAGGGAGGCGGAGGUUGCAGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000327473.4 | 3UTR | AGGUUGCAGGGAGGCGGAGGUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000327473.4 | 3UTR | UGCAGGGAGGCGGAGGUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000327473.4 | 3UTR | GCAGGGAGGCGGAGGUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000327473.4 | 3UTR | CUACUCUAAUUCCAGCACUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
600 hsa-miR-6778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT182161 POU2F1 POU class 2 homeobox 1 2 2
MIRT250472 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT447957 WDR77 WD repeat domain 77 2 2
MIRT451052 NT5C1B 5'-nucleotidase, cytosolic IB 2 2
MIRT451360 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT452047 NT5C1B-RDH14 NT5C1B-RDH14 readthrough 2 2
MIRT454691 KIAA1644 KIAA1644 2 2
MIRT457031 S1PR3 sphingosine-1-phosphate receptor 3 2 4
MIRT460265 SLC26A2 solute carrier family 26 member 2 2 2
MIRT460533 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT461619 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT482392 AEN apoptosis enhancing nuclease 2 2
MIRT488215 TESK2 testis-specific kinase 2 2 6
MIRT488783 CYTH3 cytohesin 3 2 2
MIRT490404 THY1 Thy-1 cell surface antigen 2 2
MIRT495045 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT509038 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT509057 AKAP2 A-kinase anchoring protein 2 2 2
MIRT514298 FXYD5 FXYD domain containing ion transport regulator 5 2 4
MIRT514641 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT514875 THOC5 THO complex 5 2 2
MIRT515170 AHI1 Abelson helper integration site 1 2 2
MIRT515719 SEPT14 septin 14 2 4
MIRT516021 A1CF APOBEC1 complementation factor 2 2
MIRT516150 BMP8B bone morphogenetic protein 8b 2 4
MIRT516248 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT517137 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT517793 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT517885 SSTR2 somatostatin receptor 2 2 2
MIRT517919 F2 coagulation factor II, thrombin 2 6
MIRT518128 C15orf40 chromosome 15 open reading frame 40 2 6
MIRT519202 F2RL3 F2R like thrombin or trypsin receptor 3 2 4
MIRT519496 MAPK13 mitogen-activated protein kinase 13 2 2
MIRT520987 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521525 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522850 KIAA1551 KIAA1551 2 2
MIRT523829 FAM126B family with sequence similarity 126 member B 2 2
MIRT524268 CYCS cytochrome c, somatic 2 2
MIRT524601 CACYBP calcyclin binding protein 2 2
MIRT524958 AGO3 argonaute 3, RISC catalytic component 2 4
MIRT526616 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT526933 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528471 SURF6 surfeit 6 2 2
MIRT529979 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 6
MIRT530571 ABHD15 abhydrolase domain containing 15 2 2
MIRT531752 TXK TXK tyrosine kinase 2 2
MIRT532025 FHDC1 FH2 domain containing 1 2 2
MIRT532646 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 4
MIRT535013 PRMT7 protein arginine methyltransferase 7 2 4
MIRT535226 PIGV phosphatidylinositol glycan anchor biosynthesis class V 2 2
MIRT537862 EFNA5 ephrin A5 2 2
MIRT537944 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT540245 RGS17 regulator of G protein signaling 17 2 2
MIRT540647 ZNF514 zinc finger protein 514 2 2
MIRT540802 SLC35F5 solute carrier family 35 member F5 2 4
MIRT542032 PTRF caveolae associated protein 1 2 2
MIRT542351 MED16 mediator complex subunit 16 2 2
MIRT555447 POLR3A RNA polymerase III subunit A 2 2
MIRT557268 HMGB1 high mobility group box 1 2 6
MIRT560833 ZNF786 zinc finger protein 786 2 2
MIRT573347 TRPM3 transient receptor potential cation channel subfamily M member 3 2 2
MIRT575441 Gmps guanine monophosphate synthetase 2 3
MIRT576284 Cd59a CD59a antigen 1 1
MIRT576421 Sectm1b secreted and transmembrane 1B 1 1
MIRT607409 MCTS1 MCTS1, re-initiation and release factor 2 4
MIRT607719 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT607831 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT608087 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT608314 SYK spleen associated tyrosine kinase 2 4
MIRT609295 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT610637 PIGM phosphatidylinositol glycan anchor biosynthesis class M 2 2
MIRT610662 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT611998 UTP20 UTP20, small subunit processome component 2 2
MIRT613613 FAM185A family with sequence similarity 185 member A 2 2
MIRT613786 RPS6 ribosomal protein S6 2 2
MIRT613829 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT613846 SHB SH2 domain containing adaptor protein B 2 2
MIRT614236 WDR53 WD repeat domain 53 2 4
MIRT615156 SPIB Spi-B transcription factor 2 2
MIRT615945 SORD sorbitol dehydrogenase 2 2
MIRT616591 KLHL9 kelch like family member 9 2 2
MIRT618124 LACTB lactamase beta 2 2
MIRT618453 ZFP30 ZFP30 zinc finger protein 2 4
MIRT618690 CAMK1D calcium/calmodulin dependent protein kinase ID 2 2
MIRT618905 CDK9 cyclin dependent kinase 9 2 2
MIRT619052 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619257 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT619391 RSPH3 radial spoke head 3 homolog 2 2
MIRT619446 ZNF517 zinc finger protein 517 2 2
MIRT619655 CORO2A coronin 2A 2 4
MIRT619692 AGMO alkylglycerol monooxygenase 2 2
MIRT620127 ZNF283 zinc finger protein 283 2 2
MIRT620628 UBXN7 UBX domain protein 7 2 2
MIRT620885 ANO7 anoctamin 7 2 2
MIRT621043 PPP2R3A protein phosphatase 2 regulatory subunit B''alpha 2 2
MIRT621085 WDR12 WD repeat domain 12 2 2
MIRT621127 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621159 RTTN rotatin 2 2
MIRT621419 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT621915 SYT7 synaptotagmin 7 2 2
MIRT621963 STRIP2 striatin interacting protein 2 2 2
MIRT622100 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT622182 SLC7A14 solute carrier family 7 member 14 2 2
MIRT622255 SLC22A9 solute carrier family 22 member 9 2 2
MIRT622697 PLEKHO1 pleckstrin homology domain containing O1 2 2
MIRT622871 PDE12 phosphodiesterase 12 2 4
MIRT623029 OCIAD2 OCIA domain containing 2 2 2
MIRT623200 MTSS1L MTSS1L, I-BAR domain containing 2 2
MIRT623513 KCNK3 potassium two pore domain channel subfamily K member 3 2 2
MIRT623768 GPR37L1 G protein-coupled receptor 37 like 1 2 2
MIRT623798 GK5 glycerol kinase 5 (putative) 2 4
MIRT624099 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 2 2
MIRT624222 CXorf21 chromosome X open reading frame 21 2 2
MIRT624450 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625014 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT625248 SLC35A3 solute carrier family 35 member A3 2 2
MIRT625373 IRGQ immunity related GTPase Q 2 2
MIRT625519 PGBD4 piggyBac transposable element derived 4 2 2
MIRT625524 FGFR1 fibroblast growth factor receptor 1 2 2
MIRT625769 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 4
MIRT626056 AP3M1 adaptor related protein complex 3 mu 1 subunit 2 2
MIRT626249 RBM43 RNA binding motif protein 43 2 2
MIRT626802 TTPAL alpha tocopherol transfer protein like 2 2
MIRT627396 TMEM170A transmembrane protein 170A 2 2
MIRT627649 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT627967 NIPAL1 NIPA like domain containing 1 2 2
MIRT628119 HRK harakiri, BCL2 interacting protein 2 2
MIRT628267 DDX19B DEAD-box helicase 19B 2 2
MIRT628748 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT629652 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT629663 FPR2 formyl peptide receptor 2 2 2
MIRT630089 ATG14 autophagy related 14 2 2
MIRT630098 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT631155 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT631229 C7orf65 chromosome 7 open reading frame 65 2 2
MIRT631247 ABCB5 ATP binding cassette subfamily B member 5 2 2
MIRT631350 ZFP82 ZFP82 zinc finger protein 2 2
MIRT631418 CDNF cerebral dopamine neurotrophic factor 2 2
MIRT631459 FBXO47 F-box protein 47 2 2
MIRT631507 FFAR4 free fatty acid receptor 4 2 2
MIRT631595 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT631679 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT631729 SF3B1 splicing factor 3b subunit 1 2 2
MIRT631739 NKX2-1 NK2 homeobox 1 2 2
MIRT631891 SLFN13 schlafen family member 13 2 2
MIRT632066 NARS asparaginyl-tRNA synthetase 2 2
MIRT632073 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT632149 CWC25 CWC25 spliceosome associated protein homolog 2 2
MIRT632203 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT632409 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632421 SHROOM4 shroom family member 4 2 2
MIRT632546 PRPF4 pre-mRNA processing factor 4 2 2
MIRT632555 PRPF38A pre-mRNA processing factor 38A 2 2
MIRT632726 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT632809 INO80 INO80 complex subunit 2 2
MIRT633052 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT633099 CBX5 chromobox 5 2 2
MIRT633203 WFDC6 WAP four-disulfide core domain 6 2 4
MIRT633293 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT633341 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT633364 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT633550 ATAD3C ATPase family, AAA domain containing 3C 2 2
MIRT633810 WDR92 WD repeat domain 92 2 2
MIRT634080 APOH apolipoprotein H 2 2
MIRT634287 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT634318 SLC43A2 solute carrier family 43 member 2 2 2
MIRT634352 RNF157 ring finger protein 157 2 2
MIRT634634 HIP1 huntingtin interacting protein 1 2 4
MIRT634880 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT634931 GTF2H2C GTF2H2 family member C 2 2
MIRT635340 RBL1 RB transcriptional corepressor like 1 2 2
MIRT635430 LRP10 LDL receptor related protein 10 2 2
MIRT635459 GBP4 guanylate binding protein 4 2 2
MIRT635497 CCR4 C-C motif chemokine receptor 4 2 2
MIRT635625 CDT1 chromatin licensing and DNA replication factor 1 2 4
MIRT635638 TRMT10B tRNA methyltransferase 10B 2 2
MIRT635746 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha 2 2
MIRT635780 NOA1 nitric oxide associated 1 2 2
MIRT635966 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636018 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636104 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT636118 YPEL1 yippee like 1 2 2
MIRT636190 TCEB1 elongin C 2 2
MIRT636272 RHBDL2 rhomboid like 2 2 2
MIRT636342 PHAX phosphorylated adaptor for RNA export 2 2
MIRT636577 ENSA endosulfine alpha 2 2
MIRT636783 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT636981 ZNF561 zinc finger protein 561 2 2
MIRT637147 PCDHA6 protocadherin alpha 6 2 4
MIRT637368 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT637377 HINFP histone H4 transcription factor 2 2
MIRT637618 ZNF417 zinc finger protein 417 2 2
MIRT637654 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT637700 ZNF439 zinc finger protein 439 2 2
MIRT637720 MYOZ3 myozenin 3 2 2
MIRT637753 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT637984 RRP36 ribosomal RNA processing 36 2 2
MIRT638024 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT638194 TAOK1 TAO kinase 1 2 2
MIRT638997 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT639819 TCN2 transcobalamin 2 2 2
MIRT639935 SERPINH1 serpin family H member 1 2 2
MIRT640053 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640553 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640984 VAT1 vesicle amine transport 1 2 2
MIRT641733 TXNL1 thioredoxin like 1 2 2
MIRT642222 RABAC1 Rab acceptor 1 2 2
MIRT642472 C16orf58 chromosome 16 open reading frame 58 2 2
MIRT642511 ORC6 origin recognition complex subunit 6 2 2
MIRT642609 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642727 RND2 Rho family GTPase 2 2 2
MIRT643309 TMEM151B transmembrane protein 151B 2 2
MIRT643763 NAGK N-acetylglucosamine kinase 2 2
MIRT643832 RDH13 retinol dehydrogenase 13 2 2
MIRT644047 WWC2 WW and C2 domain containing 2 2 2
MIRT644692 ZNF320 zinc finger protein 320 2 2
MIRT644838 SEC14L4 SEC14 like lipid binding 4 2 2
MIRT645293 ANGPTL7 angiopoietin like 7 2 2
MIRT645559 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646082 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646233 FGFR1OP FGFR1 oncogene partner 2 2
MIRT646422 MFAP5 microfibril associated protein 5 2 2
MIRT646443 XRCC2 X-ray repair cross complementing 2 2 2
MIRT646850 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647358 WDR5B WD repeat domain 5B 2 2
MIRT647518 PPIE peptidylprolyl isomerase E 2 2
MIRT647627 PELI3 pellino E3 ubiquitin protein ligase family member 3 2 2
MIRT647642 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT647783 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648449 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT648669 ZNF626 zinc finger protein 626 2 2
MIRT648859 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648890 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT648918 ZNF551 zinc finger protein 551 2 2
MIRT649205 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT649591 COMMD9 COMM domain containing 9 2 2
MIRT649718 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT649941 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT650318 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650896 ZNF8 zinc finger protein 8 2 2
MIRT650952 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT651020 ZNF699 zinc finger protein 699 2 2
MIRT651217 ZNF225 zinc finger protein 225 2 2
MIRT651525 WNT2B Wnt family member 2B 2 2
MIRT651726 VEZT vezatin, adherens junctions transmembrane protein 2 2
MIRT651814 USP49 ubiquitin specific peptidase 49 2 2
MIRT652331 TMOD3 tropomodulin 3 2 4
MIRT653033 STRN3 striatin 3 2 2
MIRT653259 SOGA3 SOGA family member 3 2 2
MIRT653590 SLC35B3 solute carrier family 35 member B3 2 2
MIRT653608 SLC33A1 solute carrier family 33 member 1 2 2
MIRT653706 SLC25A33 solute carrier family 25 member 33 2 4
MIRT653857 SHE Src homology 2 domain containing E 2 2
MIRT654206 RNF19B ring finger protein 19B 2 4
MIRT654227 RNF165 ring finger protein 165 2 2
MIRT654644 PTAFR platelet activating factor receptor 2 2
MIRT654969 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655228 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT655252 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT655508 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT655604 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT656099 MTA3 metastasis associated 1 family member 3 2 2
MIRT656267 MEX3A mex-3 RNA binding family member A 2 2
MIRT656503 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT656960 KIAA0408 KIAA0408 2 2
MIRT657046 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657103 JDP2 Jun dimerization protein 2 2 2
MIRT657108 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657533 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657685 GPR155 G protein-coupled receptor 155 2 2
MIRT658007 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT658352 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT658693 EMC3 ER membrane protein complex subunit 3 2 2
MIRT659034 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659538 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT659586 CEP135 centrosomal protein 135 2 2
MIRT659743 CCDC30 coiled-coil domain containing 30 2 4
MIRT659799 CAV2 caveolin 2 2 2
MIRT660545 ARHGAP29 Rho GTPase activating protein 29 2 2
MIRT660758 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660949 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661120 ZNF841 zinc finger protein 841 2 2
MIRT661520 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661709 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT661720 KLF8 Kruppel like factor 8 2 2
MIRT661754 ATCAY ATCAY, caytaxin 2 4
MIRT661922 MLN motilin 2 2
MIRT662090 ZNF419 zinc finger protein 419 2 2
MIRT662156 ALDH7A1 aldehyde dehydrogenase 7 family member A1 2 2
MIRT662312 ADM2 adrenomedullin 2 2 2
MIRT662335 MYLK3 myosin light chain kinase 3 2 4
MIRT662355 AKAP13 A-kinase anchoring protein 13 2 4
MIRT662522 AIPL1 aryl hydrocarbon receptor interacting protein like 1 2 2
MIRT663531 ZNF70 zinc finger protein 70 2 2
MIRT663572 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT663631 HM13 histocompatibility minor 13 2 2
MIRT663839 TRIM72 tripartite motif containing 72 2 2
MIRT664021 C9orf139 chromosome 9 open reading frame 139 2 2
MIRT664277 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT664374 CYB5A cytochrome b5 type A 2 2
MIRT664651 SECTM1 secreted and transmembrane 1 2 3
MIRT664761 MESDC2 mesoderm development LRP chaperone 2 2
MIRT664923 BHMT2 betaine--homocysteine S-methyltransferase 2 2 4
MIRT665112 DNASE2 deoxyribonuclease 2, lysosomal 2 2
MIRT665473 VSTM4 V-set and transmembrane domain containing 4 2 2
MIRT665806 TMEM168 transmembrane protein 168 2 2
MIRT665872 TGOLN2 trans-golgi network protein 2 2 2
MIRT666504 RNF41 ring finger protein 41 2 2
MIRT666648 RBM48 RNA binding motif protein 48 2 2
MIRT666802 PSMB5 proteasome subunit beta 5 2 2
MIRT667043 PCYOX1 prenylcysteine oxidase 1 2 2
MIRT667424 MFAP2 microfibril associated protein 2 2 2
MIRT667540 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT667675 KPNA6 karyopherin subunit alpha 6 2 2
MIRT667922 IGLON5 IgLON family member 5 2 2
MIRT668143 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668252 FUT11 fucosyltransferase 11 2 2
MIRT668661 DTWD2 DTW domain containing 2 2 2
MIRT668721 DIP2A disco interacting protein 2 homolog A 2 2
MIRT668743 DIO2 iodothyronine deiodinase 2 2 2
MIRT668926 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669019 MPZ myelin protein zero 2 2
MIRT669085 CDX2 caudal type homeobox 2 2 2
MIRT669333 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT669567 AKIRIN1 akirin 1 2 2
MIRT669588 AK2 adenylate kinase 2 2 2
MIRT669624 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT669808 STOML1 stomatin like 1 2 2
MIRT669948 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670483 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670605 NPHP1 nephrocystin 1 2 2
MIRT670882 CYTIP cytohesin 1 interacting protein 2 2
MIRT670933 LIPG lipase G, endothelial type 2 2
MIRT671527 RAB27A RAB27A, member RAS oncogene family 2 2
MIRT672637 AAK1 AP2 associated kinase 1 2 2
MIRT672859 C22orf29 retrotransposon Gag like 10 2 2
MIRT672906 KRBA2 KRAB-A domain containing 2 2 2
MIRT673105 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT673524 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT673541 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT673608 HPSE heparanase 2 2
MIRT673754 ZNF333 zinc finger protein 333 2 2
MIRT674341 KCMF1 potassium channel modulatory factor 1 2 2
MIRT674706 FAM73A mitoguardin 1 2 2
MIRT674810 FAM229B family with sequence similarity 229 member B 2 2
MIRT674909 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT675291 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675396 SVOP SV2 related protein 2 4
MIRT675535 RPL37 ribosomal protein L37 2 2
MIRT675830 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT676086 DPP9 dipeptidyl peptidase 9 2 2
MIRT676130 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT676169 HIST1H2BJ histone cluster 1 H2B family member j 2 4
MIRT676192 GSTM3 glutathione S-transferase mu 3 2 2
MIRT676289 SLC25A37 solute carrier family 25 member 37 2 2
MIRT676435 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676465 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT676500 GJD3 gap junction protein delta 3 2 2
MIRT676622 CSNK1E casein kinase 1 epsilon 2 2
MIRT676657 LRRC27 leucine rich repeat containing 27 2 2
MIRT676669 ICA1L islet cell autoantigen 1 like 2 4
MIRT676687 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT676697 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT676775 NPHS1 NPHS1, nephrin 2 2
MIRT677087 SMIM15 small integral membrane protein 15 2 2
MIRT677214 RASSF6 Ras association domain family member 6 2 2
MIRT677368 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677487 GTF2H2 general transcription factor IIH subunit 2 2 2
MIRT677599 PRKX protein kinase, X-linked 2 2
MIRT677687 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT677700 GINS2 GINS complex subunit 2 2 2
MIRT677747 GNB4 G protein subunit beta 4 2 2
MIRT677760 GRM6 glutamate metabotropic receptor 6 2 2
MIRT677786 CEACAM5 carcinoembryonic antigen related cell adhesion molecule 5 2 2
MIRT677889 DCP1A decapping mRNA 1A 2 2
MIRT677919 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT677953 CLUAP1 clusterin associated protein 1 2 2
MIRT677987 GATC glutamyl-tRNA amidotransferase subunit C 2 2
MIRT678002 CPM carboxypeptidase M 2 2
MIRT678011 SPIC Spi-C transcription factor 2 2
MIRT678025 SLC1A5 solute carrier family 1 member 5 2 4
MIRT678145 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678355 PPAP2B phospholipid phosphatase 3 2 2
MIRT678470 RNF222 ring finger protein 222 2 2
MIRT678505 LCTL lactase like 2 2
MIRT678525 P2RX7 purinergic receptor P2X 7 2 2
MIRT678532 TMEM78 transmembrane protein 78 2 2
MIRT678638 PDCD4 programmed cell death 4 2 2
MIRT678718 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678762 CEP76 centrosomal protein 76 2 2
MIRT678873 FAM118A family with sequence similarity 118 member A 2 2
MIRT678903 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT678922 XPOT exportin for tRNA 2 2
MIRT678979 CERS4 ceramide synthase 4 2 4
MIRT678984 DUXA double homeobox A 2 2
MIRT679071 MANEAL mannosidase endo-alpha like 2 2
MIRT679082 PURB purine rich element binding protein B 2 2
MIRT679091 ZNF655 zinc finger protein 655 2 2
MIRT679103 CD99 CD99 molecule (Xg blood group) 2 2
MIRT679111 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT679277 MIPOL1 mirror-image polydactyly 1 2 2
MIRT679351 LRG1 leucine rich alpha-2-glycoprotein 1 2 2
MIRT679362 SIK2 salt inducible kinase 2 2 2
MIRT679374 ZNF91 zinc finger protein 91 2 2
MIRT679377 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT679416 SLC7A11 solute carrier family 7 member 11 2 4
MIRT679504 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 4
MIRT679597 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679633 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679699 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT679708 RPL24 ribosomal protein L24 2 2
MIRT679733 UBN2 ubinuclein 2 2 2
MIRT679772 GOLGA2 golgin A2 2 4
MIRT679795 CPE carboxypeptidase E 2 2
MIRT679818 TMEM106B transmembrane protein 106B 2 2
MIRT679861 C21orf59 chromosome 21 open reading frame 59 2 2
MIRT679875 SLC25A51 solute carrier family 25 member 51 2 2
MIRT679888 SNX2 sorting nexin 2 2 2
MIRT679897 FBXO48 F-box protein 48 2 2
MIRT679924 FBLIM1 filamin binding LIM protein 1 2 2
MIRT679947 AS3MT arsenite methyltransferase 2 2
MIRT679979 E2F2 E2F transcription factor 2 2 2
MIRT679987 RUNDC1 RUN domain containing 1 2 2
MIRT680007 ZNF860 zinc finger protein 860 2 2
MIRT680059 CD96 CD96 molecule 2 2
MIRT680075 THAP1 THAP domain containing 1 2 2
MIRT680125 MFSD11 major facilitator superfamily domain containing 11 2 2
MIRT680220 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT680392 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT680425 GATA6 GATA binding protein 6 2 2
MIRT680450 PDE6A phosphodiesterase 6A 2 2
MIRT682767 TMEM120B transmembrane protein 120B 2 2
MIRT683375 ESR2 estrogen receptor 2 2 2
MIRT683482 ZNF7 zinc finger protein 7 2 2
MIRT683616 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT683680 MICA MHC class I polypeptide-related sequence A 2 2
MIRT683861 OCIAD1 OCIA domain containing 1 2 2
MIRT683904 PSMB9 proteasome subunit beta 9 2 2
MIRT684069 TLR7 toll like receptor 7 2 2
MIRT684121 CEP104 centrosomal protein 104 2 2
MIRT684175 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684234 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684481 GPR137B G protein-coupled receptor 137B 2 2
MIRT684701 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684773 MYO1F myosin IF 2 2
MIRT685187 DCTN5 dynactin subunit 5 2 2
MIRT685235 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685304 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685571 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685616 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685652 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685773 ZNF426 zinc finger protein 426 2 2
MIRT685938 PTGIS prostaglandin I2 synthase 2 2
MIRT686096 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686148 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686272 WWC1 WW and C2 domain containing 1 2 2
MIRT686378 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686470 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686481 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686905 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT687068 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687241 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687394 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT687455 NKD1 naked cuticle homolog 1 2 2
MIRT687636 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687829 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT687850 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687919 HOOK3 hook microtubule tethering protein 3 2 2
MIRT688022 GPN2 GPN-loop GTPase 2 2 2
MIRT688116 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688246 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688318 FAM151B family with sequence similarity 151 member B 2 2
MIRT688457 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688669 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT689058 AGMAT agmatinase 2 2
MIRT689109 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689162 ZNF665 zinc finger protein 665 2 2
MIRT689401 ZNF573 zinc finger protein 573 2 2
MIRT689506 ZNF865 zinc finger protein 865 2 2
MIRT689789 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT690062 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT690729 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690975 ZNF578 zinc finger protein 578 2 2
MIRT691316 KIAA1841 KIAA1841 2 2
MIRT691486 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691516 ZNF682 zinc finger protein 682 2 2
MIRT692060 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692100 CXorf38 chromosome X open reading frame 38 2 4
MIRT692203 NOL9 nucleolar protein 9 2 2
MIRT692310 RFK riboflavin kinase 2 2
MIRT692372 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692469 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692521 PARD3 par-3 family cell polarity regulator 2 2
MIRT692595 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692777 SYNPO2L synaptopodin 2 like 2 2
MIRT692869 RBM41 RNA binding motif protein 41 2 2
MIRT692964 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693346 RNF34 ring finger protein 34 2 2
MIRT693468 ZNF707 zinc finger protein 707 2 2
MIRT693870 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT694047 PRIM1 DNA primase subunit 1 2 2
MIRT694086 KIAA0930 KIAA0930 2 2
MIRT694187 ZNF347 zinc finger protein 347 2 2
MIRT694656 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694806 STX4 syntaxin 4 2 2
MIRT694927 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695607 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT695824 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695965 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696175 GNB5 G protein subunit beta 5 2 2
MIRT696326 FAM153B family with sequence similarity 153 member B 2 2
MIRT696856 UBOX5 U-box domain containing 5 2 2
MIRT696897 C14orf105 coiled-coil domain containing 198 2 2
MIRT696960 SNAP29 synaptosome associated protein 29 2 2
MIRT697241 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697383 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697455 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT697892 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT698476 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT698916 SPEM1 spermatid maturation 1 2 2
MIRT699102 SNIP1 Smad nuclear interacting protein 1 2 2
MIRT699347 SLC35E1 solute carrier family 35 member E1 2 2
MIRT699625 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699815 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT700042 RPL14 ribosomal protein L14 2 2
MIRT700499 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700748 PLAA phospholipase A2 activating protein 2 2
MIRT700829 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701291 NUDT3 nudix hydrolase 3 2 2
MIRT701816 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702192 LRRC58 leucine rich repeat containing 58 2 2
MIRT703032 HAS2 hyaluronan synthase 2 2 4
MIRT703082 GPRIN3 GPRIN family member 3 2 2
MIRT703572 FEM1A fem-1 homolog A 2 2
MIRT703941 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT704107 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704188 LDHD lactate dehydrogenase D 2 2
MIRT704576 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT704755 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705076 C4orf29 abhydrolase domain containing 18 2 2
MIRT705343 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706018 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706035 F2R coagulation factor II thrombin receptor 2 2
MIRT706096 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706273 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706338 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706590 C1RL complement C1r subcomponent like 2 2
MIRT706598 CCS copper chaperone for superoxide dismutase 2 2
MIRT706619 GMPS guanine monophosphate synthase 2 3
MIRT706738 FPGS folylpolyglutamate synthase 2 2
MIRT706828 TUBD1 tubulin delta 1 2 2
MIRT706944 DNAJC18 DnaJ heat shock protein family (Hsp40) member C18 2 2
MIRT707000 ESYT2 extended synaptotagmin 2 2 2
MIRT708270 EGLN2 egl-9 family hypoxia inducible factor 2 2 2
MIRT708362 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708621 NUDT18 nudix hydrolase 18 2 2
MIRT709067 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709500 RHOH ras homolog family member H 2 2
MIRT709532 ZBED1 zinc finger BED-type containing 1 2 2
MIRT709566 GYG2 glycogenin 2 2 2
MIRT709669 AJAP1 adherens junctions associated protein 1 2 2
MIRT709881 TRAF1 TNF receptor associated factor 1 2 2
MIRT710627 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT710705 IDH2 isocitrate dehydrogenase (NADP(+)) 2, mitochondrial 2 2
MIRT710825 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT711186 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT711413 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711822 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT711880 VASP vasodilator stimulated phosphoprotein 2 2
MIRT713329 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713447 FAM216A family with sequence similarity 216 member A 2 2
MIRT713711 PAOX polyamine oxidase 2 2
MIRT713883 MOB3A MOB kinase activator 3A 2 2
MIRT714302 ZNF454 zinc finger protein 454 2 2
MIRT714607 EXO5 exonuclease 5 2 2
MIRT714917 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT715790 TBL3 transducin beta like 3 2 2
MIRT715988 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT716409 PDLIM5 PDZ and LIM domain 5 2 2
MIRT718011 METTL15 methyltransferase like 15 2 2
MIRT718089 ABHD12 abhydrolase domain containing 12 2 2
MIRT718179 HLCS holocarboxylase synthetase 2 2
MIRT718186 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT718708 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT718869 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT719067 ACOX1 acyl-CoA oxidase 1 2 2
MIRT719775 ZNF236 zinc finger protein 236 2 2
MIRT720526 PTGR2 prostaglandin reductase 2 2 2
MIRT720899 BTBD19 BTB domain containing 19 2 2
MIRT722379 KAZALD1 Kazal type serine peptidase inhibitor domain 1 2 2
MIRT722446 RXFP4 relaxin/insulin like family peptide receptor 4 2 2
MIRT722672 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT722733 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT722867 FAM212B family with sequence similarity 212 member B 2 2
MIRT722873 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT723404 NLRP10 NLR family pyrin domain containing 10 2 2
MIRT723658 RPTN repetin 2 2
MIRT724424 WDR76 WD repeat domain 76 2 2
MIRT724544 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT724984 FSTL3 follistatin like 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6778-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6778-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6778-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)

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