pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol CLEC4D   
Synonyms CD368, CLEC-6, CLEC6, CLECSF8, MCL, MPCL
Description C-type lectin domain family 4 member D
Transcript NM_080387   
Expression
Putative miRNA Targets on CLEC4D
3'UTR of CLEC4D
(miRNA target sites are highlighted)
>CLEC4D|NM_080387|3'UTR
   1 AAACTCAGAAAGTGGTCCTTGTGATGGAAAGAGAAAAGAAAAACCAATTAGAATAAGGCAGAATGTACGTGCGTCATTGG
  81 AACACAGAAAACATGCTGGTTCATACAGCGTTTTTAGTCATAATGGTCTTTTTTATTTTGTTTGATTCATTCGAGACAAC
 161 ATGTGTGTATGTGTGTGTGTGTGTGTGTAGATAATGTGGTTTTTGTATGGTGTTTGATGGAAGGAATAATCTTTCTTTGC
 241 TTTCTTAGTAGTATTTCAAGGTGTTTACTTTTCAATTGGTGTGCACTGAATGCATGTATGGAAGAATAGCGTGAATAATG
 321 CAATCTCTTTGTCATTTTTCCCCTTCTCAGACTCTTAGCTCTTAAAATTCAAAGATGGGATATTCTAACTGGTAGTGGTG
 401 CATCATTTTTAACCCAAATATTGCAAGCACTTTAAAGATTTGAAACCACATTTTTATTGTTTGATGTTTCATTTTCAGAC
 481 TTTTTAATGTCAGTCATTACAATTACATTGCATGAGGAAAATTTTTCCAGAACAACAGTGTGGAATAGTTCTGAATTATG
 561 CTGTTCTACAGATAGAAAAAAAGTCCAAATGCCTTTAAAAATTTACTTCTTACTCCACCCAACACGTTTTTGCAAAGCAA
 641 GAAGTCTTTGTAAGACACCTTAAACAAAGTCCTTCAATTCTACAGCAGAGGAAATAAAATCCCCCAGAAGCCAAAGGGCT
 721 CACCTTCACATTGTTAGTTCATGACAGACCCAGGTGTGCTTCATTAGAGATAACATACATTCCCTTTGGTATCACAGGAA
 801 GTTACTGGGGATTACTCGACCTCATTACTTAGCTAACGACTGGATAAAATTTCTTAATTGTTTGAAGTAACATTGTATTC
 881 GTGTTTGCATTATTAATTTGAATAGAAAATAATCACATTTTCAACCCATTTATACAAATTGTTAATGTTTCTTTAGAGCT
 961 GTATAACTATAGTTTGAACTAGCAAGGAAGTTATTGTTTTGACAACCAGAAATTATGCTTTTCTGGTGCATGAAACATTA
1041 ATTGCAAAGGGCAGTCACATCCAACTTTAATAAAATATGGTGGTCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1121 AAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuagUGUUUACAGGAAUUAuc 5'
               |:|||  |:||||||  
Target 5' actggATAAAATTTCTTAATtg 3'
839 - 860 141.00 -6.90
2
miRNA  3' cuUAGUGU---UUACAGGAAUUAUc 5'
            :|||||   ||   |:|||||| 
Target 5' caGTCACATCCAA---CTTTAATAa 3'
1052 - 1073 141.00 -10.40
3
miRNA  3' cuuaguguuuacAGGAAUUAUc 5'
                      |:||||:|| 
Target 5' tctttctttgctTTCTTAGTAg 3'
230 - 251 130.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30488395 19 COSMIC
COSN18737225 20 COSMIC
COSN30508545 41 COSMIC
COSN30118095 42 COSMIC
COSN2374924 44 COSMIC
COSN7385334 72 COSMIC
COSN31554022 73 COSMIC
COSN31489503 74 COSMIC
COSN30504528 101 COSMIC
COSN17678772 123 COSMIC
COSN20109172 135 COSMIC
COSN18736489 188 COSMIC
COSN31542169 211 COSMIC
COSN5868819 232 COSMIC
COSN30162231 262 COSMIC
COSN31960747 312 COSMIC
COSN5868820 378 COSMIC
COSN32057909 537 COSMIC
COSN9480627 625 COSMIC
COSN1591195 690 COSMIC
COSN216990 839 COSMIC
COSN17840495 977 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs966430587 4 dbSNP
rs1249493536 7 dbSNP
rs762779976 9 dbSNP
rs766257005 16 dbSNP
rs1440769215 17 dbSNP
rs756761378 18 dbSNP
rs117963676 20 dbSNP
rs1262187778 21 dbSNP
rs767169681 23 dbSNP
rs865831842 27 dbSNP
rs1177005748 30 dbSNP
rs775896537 34 dbSNP
rs1361005580 39 dbSNP
rs1460506098 41 dbSNP
rs1232740851 44 dbSNP
rs1354598675 46 dbSNP
rs1330676797 47 dbSNP
rs752298337 48 dbSNP
rs755679803 49 dbSNP
rs763480573 51 dbSNP
rs750986569 53 dbSNP
rs1335569410 54 dbSNP
rs1034871109 66 dbSNP
rs1449668338 68 dbSNP
rs1215838651 69 dbSNP
rs960789125 72 dbSNP
rs1401643347 74 dbSNP
rs773013110 75 dbSNP
rs916480843 76 dbSNP
rs1451145435 81 dbSNP
rs1388190946 85 dbSNP
rs1164656869 86 dbSNP
rs770604707 87 dbSNP
rs1372915715 89 dbSNP
rs983656517 93 dbSNP
rs1019489711 98 dbSNP
rs147470619 104 dbSNP
rs759063641 107 dbSNP
rs774858576 108 dbSNP
rs984069166 110 dbSNP
rs909863067 111 dbSNP
rs762447397 117 dbSNP
rs7307664 118 dbSNP
rs975371290 122 dbSNP
rs7138828 123 dbSNP
rs1210695546 124 dbSNP
rs11442181 129 dbSNP
rs544279143 129 dbSNP
rs375761094 153 dbSNP
rs752013111 154 dbSNP
rs1242760575 156 dbSNP
rs1491486777 161 dbSNP
rs749501338 162 dbSNP
rs1319783940 168 dbSNP
rs1156688961 170 dbSNP
rs138070495 170 dbSNP
rs377759688 170 dbSNP
rs754052295 170 dbSNP
rs922800113 170 dbSNP
rs979394804 170 dbSNP
rs934152329 172 dbSNP
rs1050046492 176 dbSNP
rs1345263541 177 dbSNP
rs1380896338 177 dbSNP
rs878882990 182 dbSNP
rs1432158590 183 dbSNP
rs1298097618 186 dbSNP
rs1476977669 187 dbSNP
rs1248531431 189 dbSNP
rs7300097 196 dbSNP
rs1010598598 197 dbSNP
rs148532747 201 dbSNP
rs1355840358 209 dbSNP
rs1354890653 210 dbSNP
rs370198198 211 dbSNP
rs1217978363 212 dbSNP
rs1347680146 213 dbSNP
rs35769706 214 dbSNP
rs1276170605 236 dbSNP
rs902149695 249 dbSNP
rs1339489529 252 dbSNP
rs999283790 258 dbSNP
rs1295941259 262 dbSNP
rs1035143438 264 dbSNP
rs60451208 276 dbSNP
rs765226375 277 dbSNP
rs767508754 278 dbSNP
rs1412702190 280 dbSNP
rs1045413280 292 dbSNP
rs1023576311 296 dbSNP
rs898401478 307 dbSNP
rs1261056567 308 dbSNP
rs780233422 310 dbSNP
rs1488699826 311 dbSNP
rs184620468 312 dbSNP
rs530304744 313 dbSNP
rs547193189 318 dbSNP
rs909894329 325 dbSNP
rs1314538257 326 dbSNP
rs1188319244 328 dbSNP
rs1279918816 328 dbSNP
rs1316779220 335 dbSNP
rs777389282 336 dbSNP
rs1236666414 343 dbSNP
rs886858051 352 dbSNP
rs1159903356 353 dbSNP
rs1408135391 377 dbSNP
rs1302113945 380 dbSNP
rs1008358338 381 dbSNP
rs6487219 387 dbSNP
rs972883345 389 dbSNP
rs1464998622 397 dbSNP
rs770516774 404 dbSNP
rs1172831615 410 dbSNP
rs1478302366 413 dbSNP
rs1413346786 429 dbSNP
rs1180523131 430 dbSNP
rs1484430927 438 dbSNP
rs6487220 443 dbSNP
rs1198606170 445 dbSNP
rs189230115 456 dbSNP
rs749551448 458 dbSNP
rs1029693322 459 dbSNP
rs1050329317 472 dbSNP
rs1318199694 484 dbSNP
rs1311542702 496 dbSNP
rs74839373 502 dbSNP
rs923910878 503 dbSNP
rs946964098 505 dbSNP
rs1043966221 509 dbSNP
rs1445967020 510 dbSNP
rs1398003779 516 dbSNP
rs780082113 531 dbSNP
rs11046028 537 dbSNP
rs1349568326 539 dbSNP
rs934982128 544 dbSNP
rs1425742253 556 dbSNP
rs917992352 559 dbSNP
rs1056250369 560 dbSNP
rs947911924 565 dbSNP
rs1200036791 567 dbSNP
rs1480685152 568 dbSNP
rs896206654 569 dbSNP
rs1218928766 570 dbSNP
rs1044895714 571 dbSNP
rs1292297696 574 dbSNP
rs1239149699 577 dbSNP
rs1374629731 580 dbSNP
rs1011975005 582 dbSNP
rs6487221 585 dbSNP
rs1367039738 586 dbSNP
rs1211500087 594 dbSNP
rs887578727 595 dbSNP
rs773789454 608 dbSNP
rs1350673384 612 dbSNP
rs1158492463 613 dbSNP
rs1046770791 615 dbSNP
rs1006099447 619 dbSNP
rs1179850259 625 dbSNP
rs1433042388 626 dbSNP
rs1007996315 627 dbSNP
rs1188932681 628 dbSNP
rs1014793192 634 dbSNP
rs1269119644 645 dbSNP
rs868322871 647 dbSNP
rs182269313 648 dbSNP
rs961395514 654 dbSNP
rs1215694947 656 dbSNP
rs1351266318 660 dbSNP
rs1041214765 666 dbSNP
rs1233056150 670 dbSNP
rs1438540885 678 dbSNP
rs1311477895 681 dbSNP
rs1299359613 682 dbSNP
rs1388589544 683 dbSNP
rs973133038 685 dbSNP
rs1029769433 688 dbSNP
rs1176177403 695 dbSNP
rs1297842461 700 dbSNP
rs1398338830 701 dbSNP
rs1362849051 704 dbSNP
rs955659926 705 dbSNP
rs1396351393 718 dbSNP
rs1376421063 724 dbSNP
rs1173388701 726 dbSNP
rs985532898 731 dbSNP
rs911399060 739 dbSNP
rs1173641403 740 dbSNP
rs1192530525 752 dbSNP
rs1487067984 766 dbSNP
rs996788627 767 dbSNP
rs946826992 771 dbSNP
rs968279829 777 dbSNP
rs1235258616 789 dbSNP
rs1324404825 793 dbSNP
rs979719130 805 dbSNP
rs1336517511 811 dbSNP
rs1330808811 818 dbSNP
rs187191229 819 dbSNP
rs1307255864 822 dbSNP
rs1319468046 828 dbSNP
rs1373246434 836 dbSNP
rs1234988109 838 dbSNP
rs1255287429 839 dbSNP
rs898204035 848 dbSNP
rs992161411 859 dbSNP
rs7976134 861 dbSNP
rs1273291850 863 dbSNP
rs1457090632 868 dbSNP
rs1193685780 872 dbSNP
rs7963287 873 dbSNP
rs1253770386 874 dbSNP
rs1202111605 878 dbSNP
rs981014693 881 dbSNP
rs896124425 882 dbSNP
rs1454317551 890 dbSNP
rs931230180 916 dbSNP
rs747462360 917 dbSNP
rs1044755297 920 dbSNP
rs866929818 923 dbSNP
rs190078012 940 dbSNP
rs1244277592 943 dbSNP
rs1339112189 945 dbSNP
rs887652770 954 dbSNP
rs908440326 969 dbSNP
rs11046036 971 dbSNP
rs1377522194 973 dbSNP
rs1400196020 973 dbSNP
rs1463580256 974 dbSNP
rs1398245668 1001 dbSNP
rs1040713005 1004 dbSNP
rs1457035704 1008 dbSNP
rs899584002 1015 dbSNP
rs996576823 1016 dbSNP
rs753979738 1017 dbSNP
rs777097465 1019 dbSNP
rs1237459193 1029 dbSNP
rs11046037 1034 dbSNP
rs73045775 1039 dbSNP
rs1273755683 1047 dbSNP
rs1209476067 1052 dbSNP
rs1030087613 1054 dbSNP
rs1267667415 1072 dbSNP
rs1247169006 1076 dbSNP
rs1376867219 1087 dbSNP
rs1307681982 1091 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 338339.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000299665.2 | 3UTR | UAAAAUAUGGUGGUCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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