pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF333   
Synonyms -
Description zinc finger protein 333
Transcript NM_032433   
Expression
Putative miRNA Targets on ZNF333
3'UTR of ZNF333
(miRNA target sites are highlighted)
>ZNF333|NM_032433|3'UTR
   1 CTTCCATTTTGTAAAAATATAAACACATGGGGCTATGACTTTCCCTCGTAATACTCCTTTAGCTGCATCCTGTGTTTCAA
  81 TGTATAATATTTTCATTTTGGTTTAATTGTAAGTATTGTCTTAACCTCCATTATCGTTTATTCTTTGACCCATCTATTAT
 161 TTGGAATTAGATTTTTCAAAACTAATATGTGGATATATTTTCATAGAGGTATAATGACTTATAGTGAAATGCATACATCT
 241 GAAGTGTACAGTTGGATGAGTTTGACAGATGCATACATGCATGTAACCACCACCCCATTCCAGATATAGAATGTTTCTAT
 321 CTCTCTGGAAGGTTCCTGCATGTTATATGGCTATTTCTTAGTTGCCTTTTTGTTGTTGGTTTCTAATTTAATTACATGGT
 401 GAGAAGAGTATGTGGCCTCTTTGTTACTGAGTCATAGGTATTTGCTGAGATTTGCTATTAGGTCTGGTGTGGCTTATTCT
 481 TCTAGCTGCCAACCCAAATTACCCCTTCCTCCTTAGAAAAGAACCTGGGTTTTCTGTTCAGATTGGCAGTGTGCACTATT
 561 AAAAAGCTTCCATCTCCCGGCTGGGCACGGTGGCTCATGCCTCTAATCCCAGCACTTTGGGAGGCTGAGGCTGGGGGATC
 641 ACCTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAATCCCCTCTCTACTAAAAATATAAAAATTAGCCAAG
 721 TTTGGTGGCATGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTCTTTGAACCCAGGAGGCAGAGGTTG
 801 CAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAAACTCTGTCTCAAAAATAATAATAATAAAAA
 881 AAAGCTTCCATCTCCCAGCCCTTCTTGCAAGCAAGGGCAGGCCATTTCCTCCGGTCCTGGCTAGTATGAATATGAGAAGT
 961 CACTGGATGTGACTCTGGGGAAGATATTGTGTTCAGGGATGGTTTCATGTAGCCACATCTCTCCACTTCTTGCCTTTTGG
1041 ACAAGTAGACATGATTTCTAGACCTAGAGGAGCCCTCCTGTGACCATAAGGGTAAAAGCCGCAAGCTAAGAAGAGGGTGG
1121 CCGGAAGTCATAACCATCTTGCTTCTGTAATCTAAAAAATATTTAGGATAGATTTAATAGAATTGGCATATTTATGTGAT
1201 TGCAGCAGCCCTGGACTATTTATTTCTGGATGTCCCATACATGAAAAATATGCACTTCTTACTGGTACAGTTTTCTTTTG
1281 TTTGTTTTTGTTTTTGGTGGGAGGTTTATTTCACCTGAATATAATTCCTAACTGATGCACTTAGTATATGTCAGTTTTTA
1361 TAAATGCTTCATGGATGGTTGAAATCAATGTATTGTATTCTACAAATGTCTGCTAGATCAAGCAAATGTGTTTAAAAACC
1441 ATCTACACATTTATAAATGTTGATCTGTGATCTAGCATTTATTGAGAGAGGTATGTTAAACTCTCCCACCATGATTATGT
1521 ATTGCTGAAAAATCTTTGTCATTCTGTCAGTTTTTAAATTTATGTATATACATACATATATATGTTTTGAAGCAATGAAA
1601 TTAAATATAGATACTGACATTTTTTACATTTCCAACAAATTGTTACTTTTATTCTTATAAAGTGATCATCCTTTTCCCTA
1681 TTACTGAACATTCAACCATTCATTGTAATGATAGTAAATACTTATTTAGAGTTTACTATTAATAGATAGTAGCCACTGCC
1761 TGAAGCTTTGCATCTTTTAATTTAGTCCTCACACTGACACTTTGAGGTATGTACTGTTATCCCCAATTCCCAGATGAGGA
1841 AGCTGAGGCCCAGCAAGTTAAGGTGGGCTATCAAAGTCATCTGGGTGGCATGTGACAGGCCTGACTCTCTCTACAGTGGC
1921 AGACCCAGGGGACTAGTCTCCATTTTTACTTGTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTAAAGTTCTCTTAGG
2001 TATAACTTACATAAACGTTAATAAATCTTAGGGTACACCTTGGTGAATTTTGTATATGTCTATACCCACCACGGTCTCCA
2081 TCAAAATATTTTATCGTCCCAGAAATTTCCCTTGGGCCCCACCTCATCCTCAAAGGTTATCACTATTCTGATGTCTATCA
2161 CCATAGATTTGTTTTTCCTGTTCATGTAAATGGAACCATAAACAGCCCTCTTGTGTCTGTTTTCTTCACTTAATATAGTG
2241 TCATTGAGATTTATCTATGTTGTATTATCAGTAGTTTATGCTTTTTAATTGCTGTGTAATAGTCCATAGTCTGAATATAC
2321 CACAATTTAAAAATTCTATTCTGTTTACAAACATTTGAGTTCTGTCCTCCAGGTTCATCCATGTTATCACAAATGACAGA
2401 ATTTCCTTCCTCATCAAGGCTGAATAGTATTCCATTGTGTAGATATACCACATTTTCTTTATCCATTCATCCACCGATGG
2481 ACAGTTAGGTTGATTCCATATCTTGGCTATTGTGAATAATCCTGCAGGTTTTATTGTTATGAATAAAGCTGCTGTGAATG
2561 TTCTTGTTAAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaacccAAAAUUCUCAAGAAAu 5'
                |||||   ||||||| 
Target 5' ctccatTTTTACTTGTTCTTTt 3'
1938 - 1959 156.00 -5.70
2
miRNA  3' uaACCCAAAAUUCUCAAGAAAu 5'
            | |||||||| |||||| | 
Target 5' ttTTGGTTTTAA-AGTTCTCTt 3'
1977 - 1997 147.00 -11.72
3
miRNA  3' uaacccaaaaUUCUCAAGAAAu 5'
                    :||| |||||| 
Target 5' gctgaggcagGAGAATTCTTTg 3'
759 - 780 124.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30134593 13 COSMIC
COSN30113211 17 COSMIC
COSN30178765 32 COSMIC
COSN30130137 49 COSMIC
COSN5849539 70 COSMIC
COSN25446098 75 COSMIC
COSN21920297 407 COSMIC
COSN21840861 861 COSMIC
COSN6138299 1220 COSMIC
COSN17657302 1499 COSMIC
COSN8256553 1698 COSMIC
COSN22448915 1807 COSMIC
COSN30276630 2419 COSMIC
COSN24281454 2443 COSMIC
COSN20692183 2483 COSMIC
COSN29396525 2525 COSMIC
COSN29243855 2552 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs71334739 4 dbSNP
rs771277096 5 dbSNP
rs1350760791 9 dbSNP
rs1218236895 12 dbSNP
rs1265949807 13 dbSNP
rs759924607 15 dbSNP
rs754446447 18 dbSNP
rs753274974 20 dbSNP
rs763299833 21 dbSNP
rs767024155 23 dbSNP
rs749918076 24 dbSNP
rs755830399 27 dbSNP
rs1377816453 28 dbSNP
rs749699615 29 dbSNP
rs1420366224 32 dbSNP
rs779648443 36 dbSNP
rs753624269 40 dbSNP
rs1419054672 41 dbSNP
rs1303164280 43 dbSNP
rs150020895 44 dbSNP
rs1394142566 45 dbSNP
rs778507956 46 dbSNP
rs370357633 48 dbSNP
rs373568403 49 dbSNP
rs769134489 51 dbSNP
rs1358255965 55 dbSNP
rs1312856788 59 dbSNP
rs1009336983 63 dbSNP
rs1043877774 66 dbSNP
rs1370473469 81 dbSNP
rs904030235 82 dbSNP
rs1327895724 88 dbSNP
rs1410283991 96 dbSNP
rs1372254201 100 dbSNP
rs1301053957 107 dbSNP
rs1336135042 114 dbSNP
rs1444228437 120 dbSNP
rs1366395643 121 dbSNP
rs1167132274 124 dbSNP
rs892791574 126 dbSNP
rs1407275409 136 dbSNP
rs554754636 137 dbSNP
rs1473850243 141 dbSNP
rs1354820500 142 dbSNP
rs35398215 143 dbSNP
rs1267270549 150 dbSNP
rs576015425 151 dbSNP
rs1020545574 157 dbSNP
rs1490603448 174 dbSNP
rs1265683916 186 dbSNP
rs1223233385 189 dbSNP
rs1314612705 190 dbSNP
rs1028617585 193 dbSNP
rs971672999 207 dbSNP
rs1352234825 208 dbSNP
rs543545011 210 dbSNP
rs1008671451 212 dbSNP
rs1367983508 217 dbSNP
rs1295519566 219 dbSNP
rs752609174 223 dbSNP
rs1015606603 233 dbSNP
rs1344744827 237 dbSNP
rs1274079942 242 dbSNP
rs573512457 246 dbSNP
rs961723373 255 dbSNP
rs1459319697 256 dbSNP
rs984907908 257 dbSNP
rs564871084 262 dbSNP
rs1185950589 274 dbSNP
rs1199263786 292 dbSNP
rs377177875 294 dbSNP
rs1269827828 295 dbSNP
rs1192630370 296 dbSNP
rs1484683775 298 dbSNP
rs920423269 304 dbSNP
rs1190096866 305 dbSNP
rs758372908 307 dbSNP
rs184799602 308 dbSNP
rs972080715 310 dbSNP
rs1168731204 311 dbSNP
rs980639155 321 dbSNP
rs918497431 325 dbSNP
rs926563239 335 dbSNP
rs74482728 336 dbSNP
rs1331997535 348 dbSNP
rs911069974 352 dbSNP
rs1176337559 354 dbSNP
rs545703350 356 dbSNP
rs1379796487 367 dbSNP
rs1168752725 368 dbSNP
rs1056511253 373 dbSNP
rs1054190301 379 dbSNP
rs892929437 385 dbSNP
rs1188749614 397 dbSNP
rs1465874009 400 dbSNP
rs1240655741 409 dbSNP
rs190454477 411 dbSNP
rs182540746 412 dbSNP
rs186674360 416 dbSNP
rs192084944 417 dbSNP
rs1306653181 418 dbSNP
rs145557903 420 dbSNP
rs1049990454 424 dbSNP
rs1230797647 427 dbSNP
rs11666622 432 dbSNP
rs1003145475 437 dbSNP
rs1034904116 438 dbSNP
rs1404947096 439 dbSNP
rs1296918440 441 dbSNP
rs1461818895 452 dbSNP
rs1391111376 458 dbSNP
rs1008495538 465 dbSNP
rs1015979350 478 dbSNP
rs769990630 484 dbSNP
rs897190906 486 dbSNP
rs995549240 489 dbSNP
rs1027052177 493 dbSNP
rs958888848 495 dbSNP
rs951869397 504 dbSNP
rs1006824762 511 dbSNP
rs1341086182 513 dbSNP
rs1199072389 516 dbSNP
rs780133406 522 dbSNP
rs1016302008 530 dbSNP
rs1033536493 545 dbSNP
rs1193942511 548 dbSNP
rs1480187665 551 dbSNP
rs960870102 557 dbSNP
rs1280093980 573 dbSNP
rs992097246 574 dbSNP
rs571292139 579 dbSNP
rs373968193 580 dbSNP
rs1213651266 581 dbSNP
rs1357528645 585 dbSNP
rs945062396 589 dbSNP
rs979156453 590 dbSNP
rs553769887 597 dbSNP
rs1342295856 602 dbSNP
rs11085909 613 dbSNP
rs1194080970 614 dbSNP
rs1374975790 617 dbSNP
rs1391256727 635 dbSNP
rs932401422 637 dbSNP
rs1371632793 644 dbSNP
rs1310226076 647 dbSNP
rs536558923 659 dbSNP
rs1477193385 660 dbSNP
rs891305014 674 dbSNP
rs1472847630 683 dbSNP
rs1170549237 694 dbSNP
rs944282059 700 dbSNP
rs1037327482 706 dbSNP
rs955439459 707 dbSNP
rs1374627283 712 dbSNP
rs1435194361 713 dbSNP
rs1314629044 716 dbSNP
rs986720821 720 dbSNP
rs554459347 728 dbSNP
rs1358618557 734 dbSNP
rs911150892 736 dbSNP
rs1381130806 744 dbSNP
rs1318463070 748 dbSNP
rs1489781270 753 dbSNP
rs1289461191 763 dbSNP
rs1210603429 767 dbSNP
rs10409953 777 dbSNP
rs751364033 782 dbSNP
rs990016431 788 dbSNP
rs1239032767 791 dbSNP
rs754645975 797 dbSNP
rs1290712253 810 dbSNP
rs1026957339 811 dbSNP
rs1345207729 812 dbSNP
rs1322477111 813 dbSNP
rs905933786 815 dbSNP
rs536728450 818 dbSNP
rs1156278879 819 dbSNP
rs1456681620 822 dbSNP
rs1303049937 835 dbSNP
rs1001577167 836 dbSNP
rs1041380645 839 dbSNP
rs558722361 839 dbSNP
rs1245848996 843 dbSNP
rs376137850 845 dbSNP
rs1259802256 851 dbSNP
rs1284501936 853 dbSNP
rs780774439 864 dbSNP
rs1485852075 871 dbSNP
rs375543245 874 dbSNP
rs1056032000 875 dbSNP
rs1275795444 876 dbSNP
rs992481218 878 dbSNP
rs1006383601 879 dbSNP
rs1020893245 884 dbSNP
rs1016395896 889 dbSNP
rs1161293574 895 dbSNP
rs1468165376 896 dbSNP
rs966352432 898 dbSNP
rs897876220 905 dbSNP
rs979061552 908 dbSNP
rs559399130 911 dbSNP
rs1479152321 912 dbSNP
rs1030401067 913 dbSNP
rs954713114 919 dbSNP
rs986573656 930 dbSNP
rs572639111 933 dbSNP
rs1202388344 934 dbSNP
rs1018182993 953 dbSNP
rs964313948 961 dbSNP
rs1221328571 975 dbSNP
rs989942702 987 dbSNP
rs117940453 988 dbSNP
rs912722030 998 dbSNP
rs1227131843 1020 dbSNP
rs1365380354 1025 dbSNP
rs1175324927 1028 dbSNP
rs945751462 1031 dbSNP
rs1378378977 1043 dbSNP
rs977157425 1047 dbSNP
rs944245131 1051 dbSNP
rs928397668 1052 dbSNP
rs1415974397 1059 dbSNP
rs1037678067 1065 dbSNP
rs938358899 1067 dbSNP
rs1055904645 1073 dbSNP
rs918811851 1079 dbSNP
rs1392153835 1087 dbSNP
rs146521710 1099 dbSNP
rs1158599686 1101 dbSNP
rs140757793 1102 dbSNP
rs1436439000 1117 dbSNP
rs1037812726 1123 dbSNP
rs181176262 1124 dbSNP
rs1001565724 1125 dbSNP
rs1057255635 1131 dbSNP
rs1443530423 1139 dbSNP
rs766837067 1143 dbSNP
rs1316797891 1146 dbSNP
rs1450120833 1148 dbSNP
rs1352604247 1154 dbSNP
rs1240389596 1155 dbSNP
rs368578146 1160 dbSNP
rs1021218275 1162 dbSNP
rs966592931 1166 dbSNP
rs1213215177 1189 dbSNP
rs1000785217 1216 dbSNP
rs1032005590 1222 dbSNP
rs1184184953 1227 dbSNP
rs532471639 1231 dbSNP
rs953734737 1238 dbSNP
rs890568427 1252 dbSNP
rs1195211564 1256 dbSNP
rs985597262 1266 dbSNP
rs1018024885 1271 dbSNP
rs963969775 1272 dbSNP
rs201329633 1277 dbSNP
rs912345565 1279 dbSNP
rs1349071097 1280 dbSNP
rs990078653 1285 dbSNP
rs185493232 1301 dbSNP
rs565778441 1304 dbSNP
rs1455931697 1319 dbSNP
rs866123259 1345 dbSNP
rs1410229744 1346 dbSNP
rs977291817 1347 dbSNP
rs928396969 1355 dbSNP
rs1350601890 1359 dbSNP
rs1166974295 1362 dbSNP
rs1399507505 1368 dbSNP
rs1411918898 1369 dbSNP
rs1394742278 1372 dbSNP
rs73926605 1376 dbSNP
rs1267205812 1380 dbSNP
rs1189156217 1384 dbSNP
rs1048660119 1385 dbSNP
rs991133022 1389 dbSNP
rs753423637 1391 dbSNP
rs759285427 1394 dbSNP
rs915582749 1396 dbSNP
rs937380376 1401 dbSNP
rs1057459239 1412 dbSNP
rs895868888 1413 dbSNP
rs1228863047 1442 dbSNP
rs1010753284 1445 dbSNP
rs1279207682 1452 dbSNP
rs777286605 1453 dbSNP
rs1298911308 1459 dbSNP
rs144606154 1460 dbSNP
rs764696771 1466 dbSNP
rs1339298045 1484 dbSNP
rs1386471140 1492 dbSNP
rs1271281383 1493 dbSNP
rs1232738865 1501 dbSNP
rs1368535887 1504 dbSNP
rs941727719 1510 dbSNP
rs1042203156 1512 dbSNP
rs1387912531 1515 dbSNP
rs1321882307 1519 dbSNP
rs1337140073 1543 dbSNP
rs1197019766 1547 dbSNP
rs1376332483 1549 dbSNP
rs1249351884 1550 dbSNP
rs1480173742 1558 dbSNP
rs1434080081 1569 dbSNP
rs1425457279 1573 dbSNP
rs902353746 1575 dbSNP
rs1177608869 1576 dbSNP
rs868021495 1579 dbSNP
rs569739161 1581 dbSNP
rs1192507973 1595 dbSNP
rs1000783823 1608 dbSNP
rs1252569997 1611 dbSNP
rs1463166178 1613 dbSNP
rs56186961 1618 dbSNP
rs755568619 1618 dbSNP
rs1186528333 1625 dbSNP
rs771382079 1639 dbSNP
rs1417949908 1641 dbSNP
rs929466748 1647 dbSNP
rs182266265 1668 dbSNP
rs1475958668 1671 dbSNP
rs537218379 1681 dbSNP
rs1232299892 1687 dbSNP
rs1052370966 1690 dbSNP
rs188910386 1692 dbSNP
rs1008074231 1722 dbSNP
rs1364618775 1731 dbSNP
rs1353605178 1755 dbSNP
rs1321274164 1759 dbSNP
rs1437951330 1765 dbSNP
rs1039005257 1767 dbSNP
rs1302724454 1772 dbSNP
rs879105957 1777 dbSNP
rs1462813006 1796 dbSNP
rs1466884452 1798 dbSNP
rs953681779 1811 dbSNP
rs758285214 1813 dbSNP
rs1175200688 1814 dbSNP
rs1006531694 1815 dbSNP
rs1447272655 1820 dbSNP
rs77014535 1823 dbSNP
rs1010937089 1824 dbSNP
rs965119335 1825 dbSNP
rs1021549314 1843 dbSNP
rs534748655 1847 dbSNP
rs1400621963 1850 dbSNP
rs972902635 1853 dbSNP
rs918747872 1856 dbSNP
rs967322350 1869 dbSNP
rs111383295 1871 dbSNP
rs1257523992 1878 dbSNP
rs1357469412 1886 dbSNP
rs1216925820 1892 dbSNP
rs1341682804 1897 dbSNP
rs1035938370 1905 dbSNP
rs984319320 1905 dbSNP
rs769790381 1908 dbSNP
rs1338713777 1911 dbSNP
rs1312637203 1913 dbSNP
rs1397120380 1926 dbSNP
rs574399308 1928 dbSNP
rs992817411 1931 dbSNP
rs1204938356 1932 dbSNP
rs1252865491 1943 dbSNP
rs1427471320 1948 dbSNP
rs1484609648 1949 dbSNP
rs1210110770 1950 dbSNP
rs991661951 1950 dbSNP
rs1186820368 1951 dbSNP
rs372680699 1952 dbSNP
rs993963023 1953 dbSNP
rs1259400620 1954 dbSNP
rs1162094709 1956 dbSNP
rs1179787734 1956 dbSNP
rs1234680557 1956 dbSNP
rs1286958774 1956 dbSNP
rs1308267876 1956 dbSNP
rs1342755450 1956 dbSNP
rs1351425798 1956 dbSNP
rs1354419100 1956 dbSNP
rs1388009990 1956 dbSNP
rs1392758302 1956 dbSNP
rs140236685 1956 dbSNP
rs1409625749 1956 dbSNP
rs1419961921 1956 dbSNP
rs1457933547 1956 dbSNP
rs199819703 1956 dbSNP
rs56066058 1956 dbSNP
rs746645307 1956 dbSNP
rs761526921 1956 dbSNP
rs12982483 1957 dbSNP
rs915685479 1958 dbSNP
rs79110226 1961 dbSNP
rs1258202496 1964 dbSNP
rs917239847 1965 dbSNP
rs1475886768 1966 dbSNP
rs963011340 1968 dbSNP
rs919474464 1969 dbSNP
rs946116081 1975 dbSNP
rs1172904041 1978 dbSNP
rs1393691639 1979 dbSNP
rs35341716 1981 dbSNP
rs371963152 1981 dbSNP
rs1434590861 1982 dbSNP
rs1191697894 1983 dbSNP
rs1394361888 1983 dbSNP
rs1266798370 1987 dbSNP
rs1313997536 1988 dbSNP
rs1377839455 1989 dbSNP
rs1428715181 1990 dbSNP
rs1288422578 1994 dbSNP
rs1330335283 1995 dbSNP
rs1362848838 1996 dbSNP
rs1290571632 1999 dbSNP
rs1240792057 2003 dbSNP
rs1041856747 2011 dbSNP
rs1322410915 2013 dbSNP
rs542932936 2018 dbSNP
rs1395946232 2027 dbSNP
rs57144066 2032 dbSNP
rs1318534120 2034 dbSNP
rs1456625073 2037 dbSNP
rs1412505562 2038 dbSNP
rs78736619 2040 dbSNP
rs1377306903 2044 dbSNP
rs1051914945 2052 dbSNP
rs1345447182 2053 dbSNP
rs1233349154 2060 dbSNP
rs936519920 2063 dbSNP
rs912059228 2074 dbSNP
rs943578836 2081 dbSNP
rs1486646512 2089 dbSNP
rs1053632912 2090 dbSNP
rs893934220 2096 dbSNP
rs777703113 2097 dbSNP
rs1133720 2127 dbSNP
rs1133719 2128 dbSNP
rs1042421382 2141 dbSNP
rs576685858 2142 dbSNP
rs1372609351 2143 dbSNP
rs903064759 2149 dbSNP
rs896780213 2160 dbSNP
rs1250805426 2168 dbSNP
rs1320155425 2190 dbSNP
rs1412560083 2196 dbSNP
rs1401151747 2199 dbSNP
rs1019243563 2205 dbSNP
rs900869936 2208 dbSNP
rs1012789456 2213 dbSNP
rs993874612 2220 dbSNP
rs1188039533 2224 dbSNP
rs1450110242 2236 dbSNP
rs1399478130 2241 dbSNP
rs140185057 2245 dbSNP
rs1208553255 2258 dbSNP
rs1158390845 2259 dbSNP
rs952868429 2261 dbSNP
rs370185275 2275 dbSNP
rs560195535 2284 dbSNP
rs963104384 2285 dbSNP
rs984224514 2289 dbSNP
rs1271997572 2294 dbSNP
rs1034497465 2296 dbSNP
rs1370623819 2299 dbSNP
rs1361968951 2300 dbSNP
rs1271863246 2301 dbSNP
rs958945754 2320 dbSNP
rs1339718082 2321 dbSNP
rs1334527528 2340 dbSNP
rs1303896584 2343 dbSNP
rs756986991 2351 dbSNP
rs1349883191 2363 dbSNP
rs1368970757 2367 dbSNP
rs528293959 2370 dbSNP
rs565144734 2373 dbSNP
rs993492277 2374 dbSNP
rs1180681300 2389 dbSNP
rs1282882188 2394 dbSNP
rs917247556 2396 dbSNP
rs1190556568 2428 dbSNP
rs550615395 2438 dbSNP
rs532462005 2440 dbSNP
rs1217361286 2447 dbSNP
rs1249187274 2450 dbSNP
rs781089430 2452 dbSNP
rs372311728 2453 dbSNP
rs768509815 2458 dbSNP
rs1274482863 2467 dbSNP
rs1250747414 2474 dbSNP
rs977492856 2476 dbSNP
rs1293775304 2477 dbSNP
rs1416401551 2484 dbSNP
rs150332327 2485 dbSNP
rs936090374 2489 dbSNP
rs138258501 2490 dbSNP
rs749439324 2496 dbSNP
rs1356401534 2511 dbSNP
rs943530481 2516 dbSNP
rs974973872 2517 dbSNP
rs1415187463 2520 dbSNP
rs942627076 2522 dbSNP
rs1167659573 2525 dbSNP
rs1041400370 2529 dbSNP
rs1471820350 2534 dbSNP
rs530144782 2535 dbSNP
rs1177153609 2553 dbSNP
rs548321013 2560 dbSNP
rs1025276907 2567 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 84449.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000292530.6 | 3UTR | UAGAUAUACCACAUUUUCUUUAUCCAUUCAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission