pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol GDPD1   
Synonyms GDE4
Description glycerophosphodiester phosphodiesterase domain containing 1
Transcript NM_182569   
Other Transcripts NM_001165994 , NM_001165993   
Expression
Putative miRNA Targets on GDPD1
3'UTR of GDPD1
(miRNA target sites are highlighted)
>GDPD1|NM_182569|3'UTR
   1 AAAAAGAGGTACTTAGAAGTATTGAAGGAAAAAATGAAGACCTAAGAAAAAAATATTTCATGATCATTTCCCTAAGCCAT
  81 TTCCAGAATGGTAAAAGGTTTAATCAGTTTTTATTACCTCATTTTTAAGCCTGTATGAGAATGTAGAAACTATATATTAT
 161 ATGTATATTTATTTTAAATAATATTGTATATTTTATGTTTGTAAATTGTTTAGAAAGATAATTGGTTATGAGATGTAAGT
 241 TTTAATTTCTTAATGTGCATTTTTGTTTCTAGATCTTATACAGAAATCTTGATTAATAACATACACAGAAATGTACATAC
 321 TACATCATCTACAGAAATCTTGATCAATAACCTAGAAACTAGGTTATCTAGGTTATTGATCAAGATTTCTGTAGATGATG
 401 CAGTGTTCTATCATAAGTAATTCTGGAATCAAAGACTATTGGATACATTTGGCATTGGGCTGAGTGTGGTGGCTCATGCC
 481 TGTAATCCCAGCACTTTGGGAGGCTGAGACAGGCGGATCATCTGAAGTCAGGAGTTAAAGACCAGCCTGGCCAACATGGC
 561 AAAACCCCATCTCTACCAAAAATACAAAAATTAACCATGCGTGGTGGTACACGTCTGTCATCCCAGCAGCTCTTAAGGCT
 641 GAGGCACAAGAATTGCTTGAACCCGGGAGGCAGAGGCTGTAGTGAGCCAAGATAGCACCACTGCACTCCAGCCTGGGAGA
 721 CAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGA
 801 TCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGCAC
 881 CTTAGTCCCAGCTACTCGGGAGGCTGAGTCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCG
 961 CGCCACTGCACTCCAGCCTGGGCTACAGAGCAAGACTCCGTCTCAAAAAAAGAAAAAAAGAAAAAAAATTGGCAATAGTC
1041 TTCACTGGAATACAATCAATTAGTAAAAGATTTTTTTTTTTTTTTTGACATGTAGTCTTGCTCTGTCGCCGAGGCCGGAG
1121 TGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCCAGCAATTCTCCTGCCTCTGCCTCCCGAGTACC
1201 TGGGATTACAGGTGCCTGCTACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCACGTTGGCCAGA
1281 CTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCTCAAAGTGCTGGGATTACAGGTTTGAACCACTGC
1361 ACCCGGCCAGTAAAAGAAATTTTGAAGGCCATTGCAGCTATTTGGTAGTGTCTTGTTATTTCTAGGTGTACCTTAGTTAA
1441 AGAGGAAAAATAAAACGGAAAAAAGCTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAGC
1521 CAGGCTCAAGAAAATAAAAGTTGATTAGTTGATCAGAAATAAAATCTGTAGAGTGAATTAGATTTCTGAGTTGTTGTTGT
1601 TAATGGAACATTCTATTTGAGACCTTTTTCAGGTGTGTAGCAATTCTACCATGTCCATTTTTTTAAGCATTAAAAAGGAA
1681 CTTACCAGTTGTAAATTAAGACAAGATCCAAATAGTCATATTTTTGTGTTTCCTCTAAAAAAATGTAAGATTTCCATTTT
1761 TGGCACTGACTAACTGAGCCTACATCTAGATTTTAAATACCATCTTGAATCCTAATAATTAAACTGATGAAAGTGCATAT
1841 CATTGTTCCTAACATTTATGAACCCCCATAAAGATGTTCCTGATCTTTAAAACTCATTAATCTGAGTATTAAGTAGAAAC
1921 AGAATTTTCCAAAGCATTAGACATCACTTTCTCAGTTTATCTGAGGTGACTTCGTGTACATCTGTTTCTAATATATTTGA
2001 CTAATTTTCATGATCTCAGATTGTGAGGTAAATGTAATCTGGAATAATAAGTGTCTTTTACCTAGATTACATCTCTCATT
2081 TGGAGTTTGGCAATGAAACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGCTT
2161 TGTTGTTTAAACTGAAATAAAGTTTTCCAAGAACAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuUA-GUGUUUACAG-GAAUUAUc 5'
            || || |||| |:  |||||| 
Target 5' ttATACAGAAATCTTGATTAATAa 3'
276 - 299 132.00 -7.26
2
miRNA  3' cuUAGUG-UUUACA-GGAAUUAuc 5'
            ||: | |::||| |||||:|  
Target 5' ttATTTCTAGGTGTACCTTAGTta 3'
1416 - 1439 128.00 -11.10
3
miRNA  3' cuUAG-UGUUUACAGGAAUUAuc 5'
            ||| |||:|  | |||:||  
Target 5' tcATCTACAGAAAT-CTTGATca 3'
325 - 346 123.00 -6.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30168655 16 COSMIC
COSN30112643 25 COSMIC
COSN28887248 30 COSMIC
COSN30112673 40 COSMIC
COSN30116849 54 COSMIC
COSN28876523 56 COSMIC
COSN30112667 63 COSMIC
COSN30532481 89 COSMIC
COSN30112605 138 COSMIC
COSN31549352 147 COSMIC
COSN31558456 163 COSMIC
COSN28718322 236 COSMIC
COSN9671673 307 COSMIC
COSN20305482 426 COSMIC
COSN21695701 642 COSMIC
COSN25724195 719 COSMIC
COSN25723635 720 COSMIC
COSN28502920 727 COSMIC
COSN21688082 827 COSMIC
COSN26178906 918 COSMIC
COSN31924954 1328 COSMIC
COSM437038 1405 COSMIC
COSN19698040 1460 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1367183721 1 dbSNP
rs773760797 3 dbSNP
rs1225370838 10 dbSNP
rs1405376515 10 dbSNP
rs763487274 11 dbSNP
rs1326304792 15 dbSNP
rs1161665483 22 dbSNP
rs1335457604 23 dbSNP
rs1386455488 24 dbSNP
rs1456809336 28 dbSNP
rs1319752341 29 dbSNP
rs1398154415 37 dbSNP
rs1368277811 40 dbSNP
rs1388264783 42 dbSNP
rs1299014628 43 dbSNP
rs766449180 44 dbSNP
rs1228564285 47 dbSNP
rs751552131 48 dbSNP
rs1374087003 56 dbSNP
rs1310677949 62 dbSNP
rs1255370953 64 dbSNP
rs1390441486 66 dbSNP
rs561963861 68 dbSNP
rs1169097563 81 dbSNP
rs149948295 104 dbSNP
rs1019179435 107 dbSNP
rs1188118276 136 dbSNP
rs906653470 139 dbSNP
rs1005149606 140 dbSNP
rs967015127 154 dbSNP
rs977092376 157 dbSNP
rs1210399839 161 dbSNP
rs1275410978 167 dbSNP
rs1483480973 167 dbSNP
rs1194090506 168 dbSNP
rs1157664588 172 dbSNP
rs183004933 179 dbSNP
rs1033100822 181 dbSNP
rs1401697575 185 dbSNP
rs559397907 207 dbSNP
rs9912546 214 dbSNP
rs899411019 219 dbSNP
rs1353921215 226 dbSNP
rs957104505 229 dbSNP
rs995157067 236 dbSNP
rs1330483162 253 dbSNP
rs1026604664 264 dbSNP
rs953855427 280 dbSNP
rs539333774 288 dbSNP
rs915718135 292 dbSNP
rs751788149 296 dbSNP
rs1007017945 302 dbSNP
rs1163746459 310 dbSNP
rs1414730167 312 dbSNP
rs188447740 313 dbSNP
rs553267957 317 dbSNP
rs1357486064 323 dbSNP
rs144126313 324 dbSNP
rs1180001321 326 dbSNP
rs1437294568 341 dbSNP
rs530447356 348 dbSNP
rs957924318 354 dbSNP
rs1215672420 356 dbSNP
rs1333271320 356 dbSNP
rs989521719 356 dbSNP
rs1279243674 357 dbSNP
rs1229326680 359 dbSNP
rs1351093664 359 dbSNP
rs899181630 359 dbSNP
rs1225319941 362 dbSNP
rs1376064761 363 dbSNP
rs757581113 363 dbSNP
rs1278085182 365 dbSNP
rs1485270890 366 dbSNP
rs1280909674 367 dbSNP
rs1439631604 375 dbSNP
rs1334626518 376 dbSNP
rs550014876 384 dbSNP
rs930717638 385 dbSNP
rs1211512892 391 dbSNP
rs866371477 436 dbSNP
rs190202908 439 dbSNP
rs1392128402 453 dbSNP
rs368037655 460 dbSNP
rs889274111 465 dbSNP
rs1457561679 474 dbSNP
rs536045360 484 dbSNP
rs1157016975 492 dbSNP
rs1019148209 493 dbSNP
rs1247538559 505 dbSNP
rs916549375 506 dbSNP
rs1195519266 507 dbSNP
rs1467202341 509 dbSNP
rs1252921024 510 dbSNP
rs1364054758 512 dbSNP
rs1319078539 515 dbSNP
rs948163768 517 dbSNP
rs1282642852 530 dbSNP
rs1223608984 535 dbSNP
rs1349441533 536 dbSNP
rs903413378 537 dbSNP
rs999066121 539 dbSNP
rs1368224066 543 dbSNP
rs1393667812 559 dbSNP
rs1046892386 561 dbSNP
rs1435777961 568 dbSNP
rs1346927470 578 dbSNP
rs547701481 586 dbSNP
rs566148144 591 dbSNP
rs1174845729 596 dbSNP
rs957274591 598 dbSNP
rs940883809 601 dbSNP
rs1036469599 602 dbSNP
rs1023160067 604 dbSNP
rs1394601993 607 dbSNP
rs971214501 611 dbSNP
rs539905700 612 dbSNP
rs995041154 613 dbSNP
rs1048057828 614 dbSNP
rs757054524 618 dbSNP
rs1346920124 623 dbSNP
rs889411675 630 dbSNP
rs1215442582 636 dbSNP
rs1443358781 639 dbSNP
rs961242825 641 dbSNP
rs543083213 644 dbSNP
rs28448410 647 dbSNP
rs1234866778 648 dbSNP
rs1282444005 655 dbSNP
rs778737720 657 dbSNP
rs7221672 659 dbSNP
rs1214669420 662 dbSNP
rs1363921975 663 dbSNP
rs142165369 666 dbSNP
rs1439129296 673 dbSNP
rs1191398566 677 dbSNP
rs1251474160 678 dbSNP
rs1050531219 680 dbSNP
rs1454148795 681 dbSNP
rs1375902936 684 dbSNP
rs11653857 685 dbSNP
rs1379951134 690 dbSNP
rs1433133039 692 dbSNP
rs1460518637 695 dbSNP
rs1167347829 698 dbSNP
rs1375100529 702 dbSNP
rs1397306701 709 dbSNP
rs1417909593 715 dbSNP
rs1467340703 718 dbSNP
rs1324162184 719 dbSNP
rs1369944612 720 dbSNP
rs1260105451 724 dbSNP
rs555693592 725 dbSNP
rs1305527126 726 dbSNP
rs1324671859 727 dbSNP
rs1226616635 728 dbSNP
rs1251348415 732 dbSNP
rs1340894490 733 dbSNP
rs944801514 734 dbSNP
rs1213960175 735 dbSNP
rs1228548407 738 dbSNP
rs1251147813 739 dbSNP
rs1355815404 739 dbSNP
rs369128912 739 dbSNP
rs1170322706 740 dbSNP
rs1177488222 740 dbSNP
rs1178716412 740 dbSNP
rs1186187301 740 dbSNP
rs1337992411 740 dbSNP
rs1375012780 740 dbSNP
rs1420683286 740 dbSNP
rs1462389921 740 dbSNP
rs1475089251 740 dbSNP
rs1481317725 740 dbSNP
rs35411377 740 dbSNP
rs1272199438 741 dbSNP
rs1468317376 742 dbSNP
rs1194720664 743 dbSNP
rs1269930225 745 dbSNP
rs1427187914 747 dbSNP
rs1193136332 748 dbSNP
rs1373668170 755 dbSNP
rs1274988142 756 dbSNP
rs1398141026 756 dbSNP
rs1231152840 757 dbSNP
rs1040481461 764 dbSNP
rs1478870750 764 dbSNP
rs896790906 765 dbSNP
rs1394104856 766 dbSNP
rs1461754106 768 dbSNP
rs1295006319 769 dbSNP
rs573901882 772 dbSNP
rs994251634 774 dbSNP
rs1382554906 778 dbSNP
rs541200832 779 dbSNP
rs1163488446 781 dbSNP
rs1461241356 782 dbSNP
rs1029890602 783 dbSNP
rs1364791943 787 dbSNP
rs1296272641 788 dbSNP
rs1341807630 789 dbSNP
rs1248002820 790 dbSNP
rs1055143357 792 dbSNP
rs1468541825 793 dbSNP
rs1230997115 798 dbSNP
rs1292283202 800 dbSNP
rs1333853900 803 dbSNP
rs1261052852 812 dbSNP
rs892784164 815 dbSNP
rs1013034241 818 dbSNP
rs1022702651 821 dbSNP
rs376733271 822 dbSNP
rs1441730286 826 dbSNP
rs1215182332 848 dbSNP
rs1267563962 851 dbSNP
rs756709375 863 dbSNP
rs1324449947 867 dbSNP
rs1440879257 868 dbSNP
rs1205035037 869 dbSNP
rs1263092284 873 dbSNP
rs559321504 875 dbSNP
rs971099142 875 dbSNP
rs1452096015 885 dbSNP
rs955836639 887 dbSNP
rs1157745053 888 dbSNP
rs1185968786 892 dbSNP
rs1015409497 893 dbSNP
rs1396411471 894 dbSNP
rs961229986 905 dbSNP
rs1417261696 908 dbSNP
rs1262362378 910 dbSNP
rs1475618133 922 dbSNP
rs1167206454 923 dbSNP
rs974001169 928 dbSNP
rs1350110886 930 dbSNP
rs1301282131 932 dbSNP
rs1233683813 936 dbSNP
rs1327468719 938 dbSNP
rs1452843412 939 dbSNP
rs1298378093 941 dbSNP
rs1380880665 942 dbSNP
rs1297176497 946 dbSNP
rs919879339 947 dbSNP
rs1376920093 951 dbSNP
rs952071211 954 dbSNP
rs1412874619 955 dbSNP
rs182418599 956 dbSNP
rs139935583 960 dbSNP
rs1229628325 961 dbSNP
rs1304477038 962 dbSNP
rs186702989 963 dbSNP
rs1278469511 969 dbSNP
rs1238864814 971 dbSNP
rs145353075 983 dbSNP
rs1340227124 986 dbSNP
rs1489521968 987 dbSNP
rs1209355377 991 dbSNP
rs1294238720 992 dbSNP
rs1356898344 993 dbSNP
rs1310768266 1001 dbSNP
rs1256841401 1005 dbSNP
rs944770450 1005 dbSNP
rs1486070228 1007 dbSNP
rs1183787959 1010 dbSNP
rs1460362941 1012 dbSNP
rs1007043608 1013 dbSNP
rs1418273715 1020 dbSNP
rs1040448885 1021 dbSNP
rs1255664760 1021 dbSNP
rs1476070000 1021 dbSNP
rs1159494478 1025 dbSNP
rs1381945030 1027 dbSNP
rs924768324 1030 dbSNP
rs1030837898 1036 dbSNP
rs957947215 1038 dbSNP
rs989355794 1039 dbSNP
rs1054710901 1040 dbSNP
rs893410267 1042 dbSNP
rs530415805 1047 dbSNP
rs1044045192 1052 dbSNP
rs1296087337 1068 dbSNP
rs1336011708 1069 dbSNP
rs1389196236 1070 dbSNP
rs62083296 1070 dbSNP
rs1162859807 1071 dbSNP
rs1470612483 1071 dbSNP
rs781384753 1071 dbSNP
rs982121258 1071 dbSNP
rs539736175 1073 dbSNP
rs1391623632 1074 dbSNP
rs1015377015 1075 dbSNP
rs1181843705 1088 dbSNP
rs1232718680 1089 dbSNP
rs111389579 1090 dbSNP
rs1280294583 1093 dbSNP
rs1224705328 1095 dbSNP
rs1312845926 1100 dbSNP
rs1212410788 1106 dbSNP
rs1249704866 1108 dbSNP
rs1480392977 1109 dbSNP
rs961199145 1110 dbSNP
rs1326476252 1111 dbSNP
rs1443068401 1112 dbSNP
rs1392241660 1113 dbSNP
rs529594003 1114 dbSNP
rs1401079618 1117 dbSNP
rs754445454 1118 dbSNP
rs1239721728 1119 dbSNP
rs1395809337 1125 dbSNP
rs12939942 1126 dbSNP
rs1195609806 1127 dbSNP
rs1452395883 1132 dbSNP
rs995780554 1143 dbSNP
rs1192895215 1149 dbSNP
rs1216874360 1150 dbSNP
rs1449166928 1153 dbSNP
rs940782011 1155 dbSNP
rs954059895 1161 dbSNP
rs1415667352 1162 dbSNP
rs985413723 1168 dbSNP
rs1303452147 1179 dbSNP
rs192588305 1180 dbSNP
rs12941518 1187 dbSNP
rs1365334467 1190 dbSNP
rs966044996 1194 dbSNP
rs1431180595 1195 dbSNP
rs1346795097 1199 dbSNP
rs184772782 1200 dbSNP
rs976119156 1218 dbSNP
rs1419283460 1236 dbSNP
rs920730857 1242 dbSNP
rs1333014569 1243 dbSNP
rs924738622 1244 dbSNP
rs1425080575 1251 dbSNP
rs1187678305 1256 dbSNP
rs768385181 1261 dbSNP
rs1050614510 1272 dbSNP
rs889473177 1273 dbSNP
rs188418348 1276 dbSNP
rs193020193 1280 dbSNP
rs570206878 1290 dbSNP
rs1326398440 1300 dbSNP
rs1207607477 1305 dbSNP
rs900959797 1310 dbSNP
rs1044698963 1313 dbSNP
rs1189828755 1314 dbSNP
rs1267039633 1321 dbSNP
rs1420052937 1322 dbSNP
rs1184567004 1328 dbSNP
rs1364023858 1331 dbSNP
rs1410064289 1335 dbSNP
rs755524778 1341 dbSNP
rs906850885 1345 dbSNP
rs1165801982 1355 dbSNP
rs999270708 1357 dbSNP
rs1356257739 1358 dbSNP
rs1036777032 1363 dbSNP
rs1291732635 1364 dbSNP
rs781614829 1365 dbSNP
rs778560482 1366 dbSNP
rs1289806700 1368 dbSNP
rs185166553 1369 dbSNP
rs1227237314 1376 dbSNP
rs1312881439 1381 dbSNP
rs1323013058 1383 dbSNP
rs555507236 1389 dbSNP
rs1265401802 1392 dbSNP
rs995271111 1393 dbSNP
rs1227077704 1394 dbSNP
rs893618778 1398 dbSNP
rs1249853468 1407 dbSNP
rs745493151 1416 dbSNP
rs1188735353 1420 dbSNP
rs1027211621 1425 dbSNP
rs1292687345 1427 dbSNP
rs771588336 1428 dbSNP
rs1360826876 1433 dbSNP
rs1216280412 1437 dbSNP
rs776098228 1442 dbSNP
rs1261494925 1443 dbSNP
rs1217785582 1446 dbSNP
rs147660820 1457 dbSNP
rs190012675 1458 dbSNP
rs1367866851 1462 dbSNP
rs1430128454 1467 dbSNP
rs1309690144 1470 dbSNP
rs1019513426 1471 dbSNP
rs982559960 1485 dbSNP
rs1035018387 1499 dbSNP
rs765556470 1502 dbSNP
rs553255596 1505 dbSNP
rs976088092 1514 dbSNP
rs1444477630 1517 dbSNP
rs1398656944 1519 dbSNP
rs549381624 1528 dbSNP
rs1462274210 1544 dbSNP
rs1460611102 1547 dbSNP
rs1325573659 1550 dbSNP
rs1421634963 1565 dbSNP
rs763609967 1575 dbSNP
rs1412634845 1584 dbSNP
rs537678462 1590 dbSNP
rs1481364865 1602 dbSNP
rs930784037 1624 dbSNP
rs1236276518 1625 dbSNP
rs766928812 1631 dbSNP
rs1197992120 1633 dbSNP
rs986251573 1634 dbSNP
rs1468726966 1638 dbSNP
rs1197247569 1645 dbSNP
rs567637256 1651 dbSNP
rs1321289793 1657 dbSNP
rs1307982875 1658 dbSNP
rs910820729 1660 dbSNP
rs944977183 1663 dbSNP
rs948939806 1686 dbSNP
rs1219399635 1689 dbSNP
rs1397347352 1693 dbSNP
rs1292088589 1694 dbSNP
rs1457720668 1695 dbSNP
rs1367522656 1699 dbSNP
rs1159460556 1701 dbSNP
rs1041145795 1720 dbSNP
rs928908232 1722 dbSNP
rs1177505472 1736 dbSNP
rs938925433 1737 dbSNP
rs75358130 1744 dbSNP
rs900796036 1745 dbSNP
rs935085259 1746 dbSNP
rs9893593 1767 dbSNP
rs1453131781 1769 dbSNP
rs1261506911 1779 dbSNP
rs896837336 1790 dbSNP
rs11553495 1792 dbSNP
rs893545587 1802 dbSNP
rs1351821164 1807 dbSNP
rs1308559701 1808 dbSNP
rs931028851 1815 dbSNP
rs1213520998 1819 dbSNP
rs1241516720 1825 dbSNP
rs1010768538 1827 dbSNP
rs1299897551 1829 dbSNP
rs1193589749 1837 dbSNP
rs150277673 1840 dbSNP
rs1023464981 1863 dbSNP
rs1048170103 1863 dbSNP
rs1289059803 1864 dbSNP
rs889598404 1865 dbSNP
rs181151673 1869 dbSNP
rs1157470517 1870 dbSNP
rs1434805597 1870 dbSNP
rs575023657 1875 dbSNP
rs1196743911 1882 dbSNP
rs1035435483 1883 dbSNP
rs961995992 1888 dbSNP
rs993555645 1894 dbSNP
rs1027724615 1900 dbSNP
rs549966898 1903 dbSNP
rs986746366 1913 dbSNP
rs1211676525 1921 dbSNP
rs767616312 1921 dbSNP
rs1032064795 1922 dbSNP
rs1254750408 1928 dbSNP
rs1233214170 1935 dbSNP
rs956076501 1974 dbSNP
rs1298124888 1977 dbSNP
rs966705145 1984 dbSNP
rs116197570 1993 dbSNP
rs1297271899 1994 dbSNP
rs1414853009 1996 dbSNP
rs1403768198 1999 dbSNP
rs1407478334 2005 dbSNP
rs1170330715 2010 dbSNP
rs1465438677 2028 dbSNP
rs1373586439 2029 dbSNP
rs922274562 2033 dbSNP
rs935010192 2041 dbSNP
rs1262722265 2043 dbSNP
rs1052080817 2044 dbSNP
rs1444175315 2048 dbSNP
rs1372333268 2049 dbSNP
rs1300037326 2053 dbSNP
rs1353673220 2055 dbSNP
rs1199968065 2082 dbSNP
rs145863354 2084 dbSNP
rs1340609386 2085 dbSNP
rs915032160 2090 dbSNP
rs1285053748 2093 dbSNP
rs528109118 2100 dbSNP
rs946441581 2105 dbSNP
rs1277157907 2116 dbSNP
rs541313693 2117 dbSNP
rs752902436 2118 dbSNP
rs904985080 2124 dbSNP
rs1331558461 2126 dbSNP
rs928790513 2128 dbSNP
rs200061126 2129 dbSNP
rs1397114968 2133 dbSNP
rs1221922986 2136 dbSNP
rs746770689 2139 dbSNP
rs564300388 2140 dbSNP
rs1003889945 2151 dbSNP
rs960255626 2152 dbSNP
rs1056355875 2153 dbSNP
rs897734222 2156 dbSNP
rs1165421819 2158 dbSNP
rs993485179 2163 dbSNP
rs1027612131 2176 dbSNP
rs183732716 2183 dbSNP
rs918235412 2191 dbSNP
rs1438534156 2197 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 284161.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000284116.4 | 3UTR | UAAUAAAAACAUAGUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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