miRTarBase - #MIRT531558


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pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SRD5A1   
Synonyms S5AR 1
Description steroid 5 alpha-reductase 1
Transcript NM_001047   
Expression
Putative miRNA Targets on SRD5A1
3'UTR of SRD5A1
(miRNA target sites are highlighted)		 
>SRD5A1|NM_001047|3'UTR
   1 GTGCGTTTTTCATGAAATTATCTTCAACTTGAAGCTTTCCAATGGCGCTTCTCTATGGACTTTGTAAATAAGTTATATCT
  81 TTGTAATTTTCCTGCTACTTTATCATTTTCAAGATGTCCTCTAGGAATTTTTTTTCTAGTAATTTTGCAATCTACCTAAT
 161 AAGTACCTAAATACGCTGAAATGGAGGTTGAATATCCTACTGTGTAACAGGTCAGAATTTCAAGCTCTGGGTAATAACTG
 241 CTGATATTTTTTCTAATTTCAAATTTACCTCTTTTGGCTATGTCTTGCCAAGTGTGTATGAGACTAGACTTTACAACTGT
 321 CTTTGATGGCATTTTCAGAACAATAAATGTCACAATCCCTTCTATAGCCCCCTACAGTGATCTCTTCAAGGTCAACTGCA
 401 GTGTTGCTTCCCTCCCCCTATAGGGCTGGAATCTGTCTAGGAGCCCTCTCTCGGAGGCCACAGAGGCTGGGGGTAGCCAT
 481 TGTGCAGTCATGGCCCGGGGGAAACTTGCCAACCTTCGTGTCAGGTGCTGTGTGTAAGTGGAGAACTTGGGGATAGAGGA
 561 GGAAGCTCCTCGTGGCCCTTCCAAGGTGAGGCAAAGGCATCTGGACTTGTTCCAGCCCAGCCCACCGGGTGACATCACCG
 641 GGCAGGGAGGGGTGCTGGTGGTGGTTCATACGGAGTAAGCTGCTCTGCCTGTGTGAGTGGCTCCTGGGCCCTAAACAGGC
 721 ACCTTTAGGCCATGGGTCACTCACCGTGAGCCATCAATGTGCTCTGGTCTGACATGGTTTCTCTCTGTCTTCTAGTCTAG
 801 ACCTAGTTTTTTTGTTCTGTTCCCCACGTATGGATATAGTAGAGATTGTTGTCTGTGAAATTTCTCTTTTGTAGATTTTG
 881 AGTTTTCCCTTGTAGTGTAAAGAATGATCACTTTCTGTAACAATAACAAGACCACTTTTTAAGATTTATCCTGTTTGTTC
 961 TTTGTTGATTGAAACATAATAATTGTTAAAATTCTCTACAGCCTTCTTTTTCTTCCATAGCTAATCTTCCTTCTAATAGT
1041 TTTTGCTTTCTGTTTTGCTGTTGTTGCTTTGCAAAGCTTTCCCCTCATAGCCTGTACCTGTTATCAATATAAAATAATCT
1121 TCCTGTTGAATGCTTCATGACTTGAATTCTACTTTGATAAAAACATTGCCATACTGCTTTTTATCTTGATGAATTCATCT
1201 GGCATTGCTTTGCCTTATCATCTCATCTGGAGTTTTTAAATGCCATTTGTTTCAGTTGTCTTTAACAACATAATAAATAG
1281 ACTTTGCCATTTAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugccGAUCACCUGG-----UCCACUUCa 5'
              || |||| ||     ||||||:| 
Target 5' gctcCTCGTGGCCCTTCCAAGGTGAGGc 3'
 565 - 592 147.00 -18.40
2 
miRNA  3' ugCCGAUCACCUGGUCCACUuca 5'
            | | ||   |||:|||||   
Target 5' caGCCCAGCCCACCGGGTGAcat 3'
 613 - 635 121.00 -13.42
3 
miRNA  3' ugccgaucACCUGGUCCACUUca 5'
                  ||| ||:|| |||  
Target 5' tgcagtcaTGGCCCGGGGGAAac 3'
 483 - 505 111.00 -12.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30139690 5 COSMIC
COSN31521524 6 COSMIC
COSN30452015 12 COSMIC
COSN30188057 32 COSMIC
COSN30464652 41 COSMIC
COSN31500968 45 COSMIC
COSN31598759 47 COSMIC
COSN31581103 52 COSMIC
COSN30538838 82 COSMIC
COSN31560832 93 COSMIC
COSN30171966 95 COSMIC
COSN30494881 102 COSMIC
COSN5609506 106 COSMIC
COSN31604953 108 COSMIC
COSN31605856 137 COSMIC
COSN30115430 143 COSMIC
COSN30116842 161 COSMIC
COSN20489905 164 COSMIC
COSN26435545 175 COSMIC
COSN24709655 216 COSMIC
COSN21922882 230 COSMIC
COSN2463471 236 COSMIC
COSN17868070 583 COSMIC
COSN22184769 659 COSMIC
COSN20100960 896 COSMIC
COSN23416421 1054 COSMIC
COSN15660597 1157 COSMIC
COSN22671066 1722 COSMIC
COSN22889569 1871 COSMIC
COSN24475493 1965 COSMIC
COSN9955816 2028 COSMIC
COSN25912223 2300 COSMIC
COSN1318376 2448 COSMIC
COSN5078485 2562 COSMIC
COSN19406665 2687 COSMIC
COSN22749956 2777 COSMIC
COSN20880690 2882 COSMIC
COSN2115421 3016 COSMIC
COSN21677688 3030 COSMIC
COSN25999615 3091 COSMIC
COSN24879036 3428 COSMIC
COSN22017869 3706 COSMIC
COSN9955820 4250 COSMIC
COSN6925566 4357 COSMIC
COSN23874172 5063 COSMIC
COSN9455316 5203 COSMIC
COSN20216698 6097 COSMIC
COSN28468346 6106 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766345106 3 dbSNP
rs368217760 5 dbSNP
rs145454079 6 dbSNP
rs1367720741 12 dbSNP
rs767197043 13 dbSNP
rs1327607997 14 dbSNP
rs752227737 15 dbSNP
rs746304371 16 dbSNP
rs1306944375 18 dbSNP
rs755808330 18 dbSNP
rs1410150964 26 dbSNP
rs779375739 28 dbSNP
rs186931427 29 dbSNP
rs758946454 31 dbSNP
rs1214848943 32 dbSNP
rs1354651659 41 dbSNP
rs780759289 47 dbSNP
rs747101445 48 dbSNP
rs1243099410 50 dbSNP
rs1008689579 53 dbSNP
rs1417593619 56 dbSNP
rs1189200365 61 dbSNP
rs1249955108 83 dbSNP
rs1249712370 84 dbSNP
rs1465429833 90 dbSNP
rs1438588956 91 dbSNP
rs1275322713 93 dbSNP
rs1208319881 94 dbSNP
rs1018665076 113 dbSNP
rs1293740990 128 dbSNP
rs897669034 128 dbSNP
rs1348598380 131 dbSNP
rs1371611908 139 dbSNP
rs1479135194 143 dbSNP
rs1278419986 153 dbSNP
rs1172908462 157 dbSNP
rs1442233729 165 dbSNP
rs1355801242 167 dbSNP
rs1428369281 168 dbSNP
rs1468151335 173 dbSNP
rs535389185 175 dbSNP
rs993317206 176 dbSNP
rs567027244 178 dbSNP
rs1028005077 183 dbSNP
rs528009504 190 dbSNP
rs1177161160 193 dbSNP
rs1332395479 195 dbSNP
rs1470531170 202 dbSNP
rs991805229 205 dbSNP
rs1022956342 209 dbSNP
rs971368960 212 dbSNP
rs539789017 214 dbSNP
rs1215384816 236 dbSNP
rs981494972 236 dbSNP
rs1326839678 241 dbSNP
rs1283421247 252 dbSNP
rs1224272804 259 dbSNP
rs537527667 261 dbSNP
rs1323337604 263 dbSNP
rs1272634370 272 dbSNP
rs1222184462 278 dbSNP
rs1326973064 281 dbSNP
rs1270645728 288 dbSNP
rs1443506304 297 dbSNP
rs769506555 304 dbSNP
rs1386947214 310 dbSNP
rs924668237 310 dbSNP
rs1401811362 319 dbSNP
rs934847037 328 dbSNP
rs1170934108 351 dbSNP
rs557966551 352 dbSNP
rs577803578 364 dbSNP
rs1253808134 378 dbSNP
rs1195762937 383 dbSNP
rs1463324098 399 dbSNP
rs1204569723 400 dbSNP
rs1259784069 411 dbSNP
rs914712487 412 dbSNP
rs932949265 413 dbSNP
rs1199915677 415 dbSNP
rs1232996529 416 dbSNP
rs1348004204 418 dbSNP
rs1050426204 419 dbSNP
rs1267886200 419 dbSNP
rs190475928 422 dbSNP
rs1479372652 423 dbSNP
rs888785501 445 dbSNP
rs1311615563 449 dbSNP
rs1434139133 453 dbSNP
rs1395768211 454 dbSNP
rs1175695601 461 dbSNP
rs3297 462 dbSNP
rs3296 469 dbSNP
rs1452975220 474 dbSNP
rs1040161569 497 dbSNP
rs1392285344 498 dbSNP
rs1386967834 499 dbSNP
rs1302191644 504 dbSNP
rs897556345 513 dbSNP
rs13185837 514 dbSNP
rs993637650 518 dbSNP
rs573958794 519 dbSNP
rs1306599660 521 dbSNP
rs1295277461 524 dbSNP
rs542971426 527 dbSNP
rs1042150 535 dbSNP
rs8192253 541 dbSNP
rs966961569 547 dbSNP
rs1022797980 549 dbSNP
rs1317973931 553 dbSNP
rs1238989468 559 dbSNP
rs971380260 563 dbSNP
rs1354220287 565 dbSNP
rs1171427474 570 dbSNP
rs1259020819 572 dbSNP
rs142373255 573 dbSNP
rs1223496056 576 dbSNP
rs1475528338 576 dbSNP
rs1258966092 580 dbSNP
rs1031614458 581 dbSNP
rs1291389280 581 dbSNP
rs1480038575 582 dbSNP
rs956177441 583 dbSNP
rs1183998073 592 dbSNP
rs1206185249 598 dbSNP
rs183379709 608 dbSNP
rs13974 620 dbSNP
rs1233203132 621 dbSNP
rs932770887 624 dbSNP
rs1295184107 625 dbSNP
rs758800717 627 dbSNP
rs866556587 628 dbSNP
rs8192254 629 dbSNP
rs944374170 635 dbSNP
rs1040088910 640 dbSNP
rs1162516110 641 dbSNP
rs918915749 643 dbSNP
rs8192255 653 dbSNP
rs1179612845 656 dbSNP
rs1417929430 664 dbSNP
rs140615859 672 dbSNP
rs1487337719 673 dbSNP
rs1271629814 675 dbSNP
rs528905125 690 dbSNP
rs771879580 692 dbSNP
rs1335948416 708 dbSNP
rs1275556877 712 dbSNP
rs1049283585 714 dbSNP
rs1316354604 723 dbSNP
rs117047168 727 dbSNP
rs1391293736 729 dbSNP
rs1305585349 733 dbSNP
rs187778825 737 dbSNP
rs887621271 746 dbSNP
rs777219980 747 dbSNP
rs1013131403 749 dbSNP
rs1246731344 751 dbSNP
rs191485300 752 dbSNP
rs182685406 758 dbSNP
rs1396417303 766 dbSNP
rs1156680466 770 dbSNP
rs1363868742 772 dbSNP
rs1453034998 772 dbSNP
rs1160705202 775 dbSNP
rs1452165251 782 dbSNP
rs1251939988 789 dbSNP
rs1193914332 796 dbSNP
rs764423599 797 dbSNP
rs776802917 798 dbSNP
rs1203884977 804 dbSNP
rs1251650551 807 dbSNP
rs1350671803 818 dbSNP
rs1261354297 822 dbSNP
rs1241210584 827 dbSNP
rs956229083 828 dbSNP
rs1011662194 829 dbSNP
rs1022092679 831 dbSNP
rs557425072 834 dbSNP
rs1258245682 838 dbSNP
rs985604574 845 dbSNP
rs912717619 850 dbSNP
rs1385645663 853 dbSNP
rs1445176446 856 dbSNP
rs1182368461 859 dbSNP
rs1393965650 863 dbSNP
rs541374387 867 dbSNP
rs1173812162 870 dbSNP
rs765269164 873 dbSNP
rs965648154 886 dbSNP
rs776329907 891 dbSNP
rs1191539346 900 dbSNP
rs918971738 910 dbSNP
rs534361606 915 dbSNP
rs376031647 919 dbSNP
rs1219438604 928 dbSNP
rs1484699393 933 dbSNP
rs554183519 945 dbSNP
rs1279773385 952 dbSNP
rs1211858335 954 dbSNP
rs8192256 956 dbSNP
rs1802949 971 dbSNP
rs1048813169 972 dbSNP
rs1326839423 976 dbSNP
rs908928734 977 dbSNP
rs187859295 980 dbSNP
rs556628347 995 dbSNP
rs948453863 999 dbSNP
rs1044236006 1004 dbSNP
rs1436163381 1007 dbSNP
rs1393945213 1008 dbSNP
rs1454015740 1013 dbSNP
rs1166992827 1016 dbSNP
rs1475251920 1018 dbSNP
rs1314408308 1025 dbSNP
rs907034635 1031 dbSNP
rs745766921 1049 dbSNP
rs192786206 1060 dbSNP
rs1230841773 1071 dbSNP
rs1296638846 1076 dbSNP
rs545521820 1077 dbSNP
rs891802761 1080 dbSNP
rs1444224012 1089 dbSNP
rs571405196 1098 dbSNP
rs1021729324 1105 dbSNP
rs1461680137 1107 dbSNP
rs370343790 1108 dbSNP
rs766765615 1110 dbSNP
rs1465916821 1115 dbSNP
rs1006967488 1119 dbSNP
rs1416045253 1137 dbSNP
rs1333480123 1141 dbSNP
rs1327697021 1143 dbSNP
rs1418284547 1151 dbSNP
rs8192257 1156 dbSNP
rs1168731957 1165 dbSNP
rs1802278 1170 dbSNP
rs1251064788 1171 dbSNP
rs1173322420 1172 dbSNP
rs1418423255 1174 dbSNP
rs1460315979 1179 dbSNP
rs553134101 1197 dbSNP
rs1189313679 1210 dbSNP
rs1470575119 1213 dbSNP
rs1004784186 1214 dbSNP
rs150447706 1218 dbSNP
rs1336692316 1219 dbSNP
rs1015641934 1222 dbSNP
rs965533328 1223 dbSNP
rs1403990578 1231 dbSNP
rs1181351704 1241 dbSNP
rs972985322 1250 dbSNP
rs1239741987 1256 dbSNP
rs918802600 1269 dbSNP
rs373828133 1271 dbSNP
rs1273661442 1273 dbSNP
rs1229971779 1288 dbSNP
rs961357600 1299 dbSNP
rs995470443 1304 dbSNP
rs113796634 1312 dbSNP
rs959459971 1317 dbSNP
rs527531153 1318 dbSNP
rs1439111560 1329 dbSNP
rs777428493 1331 dbSNP
rs1407634800 1332 dbSNP
rs748757197 1336 dbSNP
rs1158111033 1340 dbSNP
rs908863781 1344 dbSNP
rs572302242 1345 dbSNP
rs1213417334 1346 dbSNP
rs548859766 1350 dbSNP
rs1222820293 1355 dbSNP
rs138273047 1362 dbSNP
rs923643796 1363 dbSNP
rs1445247418 1368 dbSNP
rs184720258 1368 dbSNP
rs928474078 1369 dbSNP
rs1053346505 1376 dbSNP
rs39848 1382 dbSNP
rs931735906 1391 dbSNP
rs1355264769 1392 dbSNP
rs1053054538 1404 dbSNP
rs1192615185 1409 dbSNP
rs1271453437 1410 dbSNP
rs1370700968 1410 dbSNP
rs1481004943 1411 dbSNP
rs1176315191 1416 dbSNP
rs891682885 1427 dbSNP
rs775364968 1428 dbSNP
rs947307133 1438 dbSNP
rs371866722 1443 dbSNP
rs1401319816 1473 dbSNP
rs1043481243 1478 dbSNP
rs890292694 1484 dbSNP
rs1344707439 1487 dbSNP
rs542520713 1489 dbSNP
rs1454047306 1499 dbSNP
rs1005242020 1502 dbSNP
rs1007019641 1504 dbSNP
rs1192754560 1507 dbSNP
rs1036286552 1513 dbSNP
rs539160039 1526 dbSNP
rs188960460 1531 dbSNP
rs746822374 1534 dbSNP
rs1488952702 1537 dbSNP
rs1277647371 1545 dbSNP
rs995524328 1556 dbSNP
rs1026956962 1565 dbSNP
rs768958563 1570 dbSNP
rs1348208533 1571 dbSNP
rs1302391812 1574 dbSNP
rs1221249261 1579 dbSNP
rs1360354965 1581 dbSNP
rs901351531 1586 dbSNP
rs1281151191 1597 dbSNP
rs1401204085 1597 dbSNP
rs994310173 1597 dbSNP
rs776958626 1598 dbSNP
rs1434317260 1599 dbSNP
rs1359911984 1623 dbSNP
rs1352216659 1626 dbSNP
rs1407934470 1632 dbSNP
rs1025915241 1633 dbSNP
rs959751567 1646 dbSNP
rs140265468 1649 dbSNP
rs1016381229 1653 dbSNP
rs1025604965 1671 dbSNP
rs1485727531 1672 dbSNP
rs868042832 1673 dbSNP
rs1282917310 1681 dbSNP
rs554372367 1689 dbSNP
rs928359564 1690 dbSNP
rs1219747324 1695 dbSNP
rs1363356285 1696 dbSNP
rs1342983777 1706 dbSNP
rs1292002241 1711 dbSNP
rs938536031 1713 dbSNP
rs989073033 1717 dbSNP
rs1304750024 1724 dbSNP
rs1223306574 1727 dbSNP
rs1460712416 1739 dbSNP
rs978199553 1741 dbSNP
rs1490087177 1754 dbSNP
rs1171177382 1756 dbSNP
rs1199064916 1757 dbSNP
rs191985634 1769 dbSNP
rs536993279 1770 dbSNP
rs545674160 1771 dbSNP
rs1475212412 1773 dbSNP
rs989134096 1778 dbSNP
rs889794260 1787 dbSNP
rs1175110211 1789 dbSNP
rs773228507 1792 dbSNP
rs942646132 1796 dbSNP
rs921594825 1805 dbSNP
rs576516069 1808 dbSNP
rs931761032 1811 dbSNP
rs1271746547 1819 dbSNP
rs1322394434 1824 dbSNP
rs766812283 1827 dbSNP
rs994247402 1830 dbSNP
rs1026265964 1842 dbSNP
rs1366356627 1851 dbSNP
rs1007059549 1852 dbSNP
rs1301015166 1853 dbSNP
rs867655944 1856 dbSNP
rs1325076677 1857 dbSNP
rs1458405116 1861 dbSNP
rs1006216994 1881 dbSNP
rs1156372525 1882 dbSNP
rs1418018366 1896 dbSNP
rs911597239 1898 dbSNP
rs940507560 1917 dbSNP
rs751876791 1927 dbSNP
rs1370517918 1932 dbSNP
rs1251584059 1947 dbSNP
rs1229473874 1948 dbSNP
rs969708985 1949 dbSNP
rs1489116933 1957 dbSNP
rs1267279718 1958 dbSNP
rs1358234946 1962 dbSNP
rs1219824340 1969 dbSNP
rs899094332 1981 dbSNP
rs1316447904 1982 dbSNP
rs1290013206 1987 dbSNP
rs1439988988 1995 dbSNP
rs1368508044 1997 dbSNP
rs1177564013 2006 dbSNP
rs1325016806 2009 dbSNP
rs979713678 2010 dbSNP
rs1035298998 2013 dbSNP
rs1392726453 2015 dbSNP
rs1205820285 2026 dbSNP
rs1232751964 2028 dbSNP
rs1469056689 2035 dbSNP
rs1360621311 2036 dbSNP
rs371231427 2038 dbSNP
rs755370927 2039 dbSNP
rs767909987 2048 dbSNP
rs1444214957 2055 dbSNP
rs112712501 2065 dbSNP
rs539000954 2065 dbSNP
rs1270051168 2066 dbSNP
rs1203906617 2068 dbSNP
rs1487972170 2071 dbSNP
rs1286908998 2072 dbSNP
rs1161949245 2073 dbSNP
rs1048450346 2074 dbSNP
rs1346048531 2075 dbSNP
rs564077855 2083 dbSNP
rs895146730 2084 dbSNP
rs561669328 2085 dbSNP
rs1012779454 2087 dbSNP
rs753467801 2090 dbSNP
rs942698268 2099 dbSNP
rs1340591287 2109 dbSNP
rs1336760346 2119 dbSNP
rs1025068219 2121 dbSNP
rs1299544214 2122 dbSNP
rs1381465025 2126 dbSNP
rs1432455536 2136 dbSNP
rs1041091614 2137 dbSNP
rs922588076 2140 dbSNP
rs1466815832 2141 dbSNP
rs906573504 2142 dbSNP
rs1191651897 2143 dbSNP
rs930089045 2150 dbSNP
rs1263968946 2159 dbSNP
rs999668895 2170 dbSNP
rs888618283 2171 dbSNP
rs1271632669 2174 dbSNP
rs559118134 2180 dbSNP
rs1339677553 2182 dbSNP
rs1031101609 2190 dbSNP
rs958304884 2193 dbSNP
rs184765558 2198 dbSNP
rs1272782185 2215 dbSNP
rs756919485 2216 dbSNP
rs1346842223 2217 dbSNP
rs541152715 2231 dbSNP
rs953078628 2236 dbSNP
rs1226565526 2237 dbSNP
rs987503860 2244 dbSNP
rs911663193 2248 dbSNP
rs1412339248 2252 dbSNP
rs940391401 2268 dbSNP
rs16877779 2269 dbSNP
rs1397478368 2273 dbSNP
rs1404798099 2276 dbSNP
rs1166563954 2278 dbSNP
rs1181962006 2281 dbSNP
rs1374940898 2283 dbSNP
rs1035354060 2291 dbSNP
rs1173456663 2303 dbSNP
rs920409804 2308 dbSNP
rs930587198 2312 dbSNP
rs1055708665 2314 dbSNP
rs542248419 2314 dbSNP
rs1188499650 2316 dbSNP
rs959698341 2317 dbSNP
rs1248126219 2324 dbSNP
rs73033343 2326 dbSNP
rs1417156234 2327 dbSNP
rs1470902035 2329 dbSNP
rs1177114929 2330 dbSNP
rs1259841757 2330 dbSNP
rs368533420 2331 dbSNP
rs1231397486 2334 dbSNP
rs1355023736 2337 dbSNP
rs1046807096 2338 dbSNP
rs1449761843 2345 dbSNP
rs562400766 2346 dbSNP
rs999546116 2352 dbSNP
rs1327799167 2353 dbSNP
rs1446416581 2355 dbSNP
rs1031167088 2356 dbSNP
rs1269960224 2358 dbSNP
rs1401498325 2361 dbSNP
rs968971938 2362 dbSNP
rs893966221 2367 dbSNP
rs978597516 2370 dbSNP
rs1225885775 2379 dbSNP
rs1010993307 2381 dbSNP
rs75644398 2386 dbSNP
rs1178263440 2396 dbSNP
rs550932914 2396 dbSNP
rs1458003471 2398 dbSNP
rs1201775098 2408 dbSNP
rs1263978474 2412 dbSNP
rs1447748276 2416 dbSNP
rs780171033 2424 dbSNP
rs976661539 2430 dbSNP
rs1192806833 2431 dbSNP
rs1240109543 2432 dbSNP
rs987166907 2436 dbSNP
rs1229494629 2438 dbSNP
rs922599274 2442 dbSNP
rs1308000361 2447 dbSNP
rs765671755 2459 dbSNP
rs1378106006 2465 dbSNP
rs1019013130 2470 dbSNP
rs1311969046 2472 dbSNP
rs961814813 2476 dbSNP
rs1176905958 2484 dbSNP
rs10512872 2495 dbSNP
rs1382904340 2496 dbSNP
rs941423165 2498 dbSNP
rs1440624109 2500 dbSNP
rs920460726 2502 dbSNP
rs527414913 2504 dbSNP
rs547166124 2505 dbSNP
rs1247142885 2510 dbSNP
rs1056603116 2515 dbSNP
rs1444764884 2518 dbSNP
rs991694583 2526 dbSNP
rs1216847122 2528 dbSNP
rs1355468552 2539 dbSNP
rs145388627 2549 dbSNP
rs768545633 2552 dbSNP
rs1046422579 2554 dbSNP
rs1338890240 2558 dbSNP
rs1009879330 2560 dbSNP
rs927964958 2564 dbSNP
rs1284327235 2577 dbSNP
rs1345387782 2578 dbSNP
rs1439295130 2578 dbSNP
rs1297708087 2581 dbSNP
rs1420518565 2582 dbSNP
rs114457004 2603 dbSNP
rs999934874 2605 dbSNP
rs1018158152 2607 dbSNP
rs1425676098 2610 dbSNP
rs1052478734 2613 dbSNP
rs1491239319 2613 dbSNP
rs377505407 2613 dbSNP
rs779239501 2613 dbSNP
rs200365674 2614 dbSNP
rs893851362 2615 dbSNP
rs560748892 2621 dbSNP
rs976671256 2626 dbSNP
rs1204767706 2658 dbSNP
rs1209007095 2664 dbSNP
rs1011093245 2665 dbSNP
rs1279866554 2666 dbSNP
rs1051003085 2670 dbSNP
rs1316652317 2683 dbSNP
rs889403014 2693 dbSNP
rs1009544493 2699 dbSNP
rs1018653319 2703 dbSNP
rs961699622 2704 dbSNP
rs1447657557 2708 dbSNP
rs982826982 2709 dbSNP
rs1479404828 2714 dbSNP
rs993130101 2717 dbSNP
rs1463889116 2723 dbSNP
rs909859532 2724 dbSNP
rs1027409520 2728 dbSNP
rs1171306228 2730 dbSNP
rs1478484841 2731 dbSNP
rs951754541 2734 dbSNP
rs991353736 2736 dbSNP
rs1180923111 2743 dbSNP
rs778255005 2756 dbSNP
rs941488090 2791 dbSNP
rs1238392525 2797 dbSNP
rs1212630240 2798 dbSNP
rs1456718454 2798 dbSNP
rs115134023 2801 dbSNP
rs1219842792 2802 dbSNP
rs971364340 2803 dbSNP
rs372524379 2805 dbSNP
rs570338183 2810 dbSNP
rs1310715318 2813 dbSNP
rs1227936724 2815 dbSNP
rs748395024 2824 dbSNP
rs1304841412 2825 dbSNP
rs1156315754 2827 dbSNP
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rs1366172921 2841 dbSNP
rs924494749 2852 dbSNP
rs935333734 2857 dbSNP
rs746619439 2858 dbSNP
rs1385564169 2859 dbSNP
rs773287171 2873 dbSNP
rs1056655385 2881 dbSNP
rs527944260 2882 dbSNP
rs1238020889 2890 dbSNP
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rs915338553 2902 dbSNP
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rs1361797631 2910 dbSNP
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rs889281483 2928 dbSNP
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rs1448878106 2946 dbSNP
rs1388432964 2949 dbSNP
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rs1251085949 2954 dbSNP
rs866333570 2961 dbSNP
rs760085365 2973 dbSNP
rs993183754 2982 dbSNP
rs142380783 2993 dbSNP
rs554716450 2996 dbSNP
rs144126233 3000 dbSNP
rs1022830123 3009 dbSNP
rs1384998995 3010 dbSNP
rs1265802288 3017 dbSNP
rs1191139442 3019 dbSNP
rs1488841087 3028 dbSNP
rs767856790 3030 dbSNP
rs781021049 3032 dbSNP
rs1353325357 3039 dbSNP
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rs1242003376 3050 dbSNP
rs1391345810 3053 dbSNP
rs1300483915 3062 dbSNP
rs1329372387 3069 dbSNP
rs1385138799 3083 dbSNP
rs1295862296 3090 dbSNP
rs1418584624 3090 dbSNP
rs1360721970 3091 dbSNP
rs1160090942 3095 dbSNP
rs1455617650 3104 dbSNP
rs962647567 3107 dbSNP
rs924547025 3108 dbSNP
rs755074458 3109 dbSNP
rs531369899 3110 dbSNP
rs926681679 3116 dbSNP
rs1488023984 3122 dbSNP
rs988130808 3122 dbSNP
rs915223412 3131 dbSNP
rs1264094204 3132 dbSNP
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rs1255232229 3140 dbSNP
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rs1299637030 3185 dbSNP
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rs1040541483 3190 dbSNP
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rs751526052 3336 dbSNP
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rs888906260 6041 dbSNP
rs1372029462 6045 dbSNP
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rs1350923700 6086 dbSNP
rs1167579623 6096 dbSNP
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rs1240470552 6101 dbSNP
rs1287182978 6106 dbSNP
rs1473659790 6107 dbSNP
rs886766903 6113 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 6715.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000274192.5 | 3UTR | AUUUUCUCCCACUCUGUGCGUUGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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