miRTarBase - #MIRT531581


—
pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol STXBP5L   
Synonyms LLGL4
Description syntaxin binding protein 5 like
Transcript NM_014980   
Expression
Putative miRNA Targets on STXBP5L
3'UTR of STXBP5L
(miRNA target sites are highlighted)		 
>STXBP5L|NM_014980|3'UTR
   1 CTTCTAAAGAAGCTGTGACTGCTTTGAGAAACCATATTCAGGGAAACCAAATTTATTCCCAGCATCACTACTCAACTGCT
  81 AGAAGCCAGTTTCTTCTACAAAATGTTCCATTTACAGTCAATCTGAAATTTTCATAAAAGAGATGTATCAGAGACACTGT
 161 GCAACCCAAAGGCTGGAGCCCTGGTTAAAATCCCAAAATACGGCTGAATTTGCCTTTTCCCATGTGGAATGGAGCTATCA
 241 TCTTGGCATGTCATTCGATAAGGATTTATATTTAGTAACTACGGGGAGTCCTCTTGATTTGAAAATTCCTGTACAAACAA
 321 AAGCATTAATGCACTTAATGAAAAAAAATCTTTGCATGATAAATTAACATCTTAAGGGGAAAAGAAAAAAAAGCATGTTG
 401 TGATAGAAGAAAAAAAGATTCATGGTAAACTATTTCTATCAATTGGGCCACACTCAACAATTTAAAAAATCTGCATTTGA
 481 AGATGTCAGTGCATTTCAAATATATTTGCCATACCCAACTGAAACGGAAAACAAAACAAAACAAGAACCCAGAGTTTTCT
 561 CCTCATCTGTAACTTTCATTGTACTAGAACCTTATTGAATTCTTATGGCAAGAGTCTGATTAATGTTCTCTCTCCATGTT
 641 TTACATCATTCACAGTTGTGTCAAAATCAAATATTGCCAGTATAGTAAATTATTCCCAACACAATCAGTTTCATTTCTAT
 721 CACCTTCAGAATGGGTTGCTGTTTTTAGCACAAACCATGCAGGGTTGGGTCACCTCAAAGCATTTTCTTCAGCCTGGCTT
 801 GTACTCTATAGGGGAGTTGGTAGTAGGTGTGGGGAATCTATAGGAACAATAGAGTTAGCTATGAGAACTGACTTCACAAA
 881 AAGGGAAATTTCACACACCCCAATTTCAGCTTCTAAAGTGATATATTTTAAAAGCTTCATTTGTATCCTTGTCTGCCAGT
 961 TACACAGTATATTACTGTTCAAACCCAGTAGGGTCTGCAATCGAAAGGTGCTCTTGCAGCCTGACATTCACAAACCAAAC
1041 TGGTCATTCTCTTTAGTGTGATTCAGTAAAATCTCAGTTAATGTTTTGGGAAAGGGATTCTGATTTATGACATTTCTGAT
1121 TTACAAGGGCTTTCCTTAGAAAATACCTTTCGGTTTGATACTTACCACTGGAAATTGGTTCGATACTTACCACTGGAAAT
1201 CTTTATAAAATATAGTGATCTGTTTGCTATCTTGGTCTCAGTCATCATTATAGACAATAGAAATACATAAAGAGTTTAAT
1281 GATACAAAATCAATGCTTTTGTCCCTAGGTCAAATAATATAAGCCACTAGATTATGTCAATAGATGCCAAACACTTGTCC
1361 CTTATTAAAGACTCTTTTAAAGCTGGAATAAAGAATATCCTTAACATGATACAAGGTATCTATAACTCACCAGAAAAGCA
1441 CCAGAGTCAAAACCAAATAGAGACACCTACTACCATTTAACATGATTCTGGAAGTCAAAAGTTATAGGAATGTATATATA
1521 CACATTCCAGGACCCATCCTGTAATATGTTGTTTCGTCAAGAAAAGTTTTAATTATGGTTTTGGCTTATTGAATTTTTGT
1601 TTATCAAGGTCTCATTGGATTTACATTTGTGTTTCTTAAGACTTCACAATTTTCCTGGATTTCAGGTTATTTTATTAGCC
1681 AAAAAATCGTATTTTTATTTCCTTTTTAGTCTAATTTTTTGCTAGAAGTTGTACTTTCTAGCAAATGTTTCTAGTGGTAC
1761 AATGTTCTCAGTAATTTTGAGGAGAACAAAGATGAGTGAAAGAGTTAGATAATGTACACTAGGATAGCATTTCTCAGAGT
1841 CCTTGAATCCTCTTGTTAAGAAAGCCTCTCTGAATCTCCCAGACTCCTGTGAACAGCCTTACGGTAACAGAATCTGGCTT
1921 GGAAACACAGACATTACATGACTGTATAATTTATAGAATTATAAAATTATATGGTAAAAATATTAAAGAAACTTAAGAGT
2001 AGGATCTAGAAAATACTAGTGGCCAAATTGCAATGTATTCTTTGTACCATCTGTTTCAAAGACTTAGTTTTCTGATTTTC
2081 AGAACAAATACTTTATCGTTTCTGTATTTTAAAAAAAACTAAAAGAGTAAAATATTAGTTTATTTTAGAAATAATGAAAT
2161 TCAGTCCAAAGTAGCAGTACATTTGATGAGTATTTCTGAAGCCTTCAATAAGATTTAACTTGTTTTAACTTGATCTACAT
2241 CGAGATTTCTCAAAAGCAGCACTATTAGCTGAAAGTCTTTGTTGTGGGGAACTGTCCTGTGTATTGTAGGATGTTAGCAA
2321 CATCCCTGGCCTCTGTCTACTAGATGCCAGTAAGAACCTCCTAGTAATGACAATCAAAATGTCTCCAGTCATTGCCAAAA
2401 TTTCTCCCAGTTCACAGCCACTATTCTACATCATACAAAGAGGTAGATTGTGTGAATATGTAATATATGTTGTTGTATAA
2481 AACTGTACAATAAGTATACAATGTCTTAGCAAGATAAATTATTATACCCAAAATTACATGTGTGGTTCATATGCAATAAG
2561 ATACAATTTTGAAGAAAGCTTATAGGAATCAGTGAAAAATAACAACTACAGAATATTTTAAGGCACACAGAGAAAATATC
2641 AAAAAGGACATTATAGCATTTCACTGTAGAAGTGCTTAAAACCTTGGCCTCAGTGAATAGATCAAAAGTTTATAATTAGC
2721 ACACCAATTGGAAGTAAACAGGTGCTTCTCAAATGCTTGAAAAGAAAAGGCTCTTTGAAGTAGTTAAAACGTGTCTTTCA
2801 AAATTGCTTTTATAAGCCCTTCCTTAACGTAAGGGTAACTTCATCTCACAAACTCCTGGTTAGTGGAATCCAAATTAATG
2881 AGGTTTTACTGTATCAAAATTATTTTTATAATTCAAAGAGATGATAGCAATAAGAAGAATCTAATGTGGATGTGATTTTT
2961 CTCTTTGAACAATTCTGTTCTGTTGCACTGACCTTAGCACGCACGCACACACACACACACCATCGCCACCACTACCATCA
3041 TCATCTTATCCTCATCTTTGGAAAATAAGTACTGTTGATCCATGTAATCCTTTGCATAGTCTCATCTTTACTATCTTTCT
3121 TCTATTTCGGAACATAAGAAAAATACTCCTAATAACTTGGACAATGATACAGAAAGTGACTCTGAGCCTTAGTTACCATC
3201 AAAATTACATTCTATCTGCTAAAGCGACATCAGAAGATAAGGCTTGCAAACCACAGTCCCAACAAGTTGACCTTGTCTCC
3281 CTATGATTTCCTTGGAAGATAAGGCCTTTTTAGTGTTACAGTAGAAAATGGGCCTTTTCATTTATTCATCTGTGAGAAGC
3361 TAGAGGTATTTGTTTCCCTGATAATAACGTGAGCAATAGTCCCTACCTTGAAATCATCCATTAGTCTTGGAGTTTGGAGG
3441 GAGGAATGATTGATTCCTCATTTGTTTTAATCACCTACAAAAGCAGTACTACTGACTTTGCTTCTTACACTTCACTGAGC
3521 CCCAGACTTTAGGGCCCCAATCATTGTCAAGATCATTGTCTAACTGGAACTCTGAAAGGACAGTGACAGAACTGAATGAG
3601 ATGTTTTCCAGTGATTCAGTCACAAAGACAATTTTCTCAGATCTTTTGAAAGTGATTCTCAAATAAATAAATCAAAATCC
3681 AACTCCTTTCCCTCAAAGTTTCTAGGGATCTGAAGGAAAAGGTTTACTGTTGGAGTCCCTTTTTATGTGACCCATGTACC
3761 AGTTTTAAAGGCATCATCTATACTTTATCTACATGAAGGGATCACCATGACTTTGAGAGAAAAAAGAATCAGATTAGGCC
3841 TAACATTGGTTGAAGAAGATTAAAATAGATTCTTATATTCAAGCAGAAGGGAAAAATGAAGCCAATCTAGAAAAGTAAGC
3921 TAAAAATCCTCTCCTTGGCTTAGGATCATTGGGTCAAACTGGGAGTATATCTGTGTGATTACAACCTGCTGCTATGAGAA
4001 AAAAGAATTGTAACTTGACCATGTTGGCTCACACAGGGCAATGCAAAAGAAGTCAAAACATTCATATCAGGTCTTGGTAT
4081 CTGTGTCAGGAGAAACGTGGTGGCTTTCACAGCTTCTTCACCTCTGTCCTCTGTCATGCAACTCCATTTTTGGCTAGGTA
4161 CTATTTCACATGCACACTGTCCTGGGTGCCAGAAATACTTGTGGTGTACTTGGTTTGAGCAGTACCTCTAGTATGCACCA
4241 TTCCAGGGAACATGGTTGTCAACATAACAAGTTTAGTGTGTGTATTTGCAGACAACATAGCCCTGAAAGCATGAAATGTA
4321 GAATAGGTAAGGTCTGTCTTAGAAAAGGAGGAGGAAGTACCAATTTGGTGCAAGAAGATCGTGGTGAGGAAGGACATGGG
4401 AGCCACAGTGAAGTGAAAGAGGCTTTAAGGAATCAGATGCACAGATGGATGCTTTGATTTACACATTTATCTAGAGGAGT
4481 GATTCTCAACCTTGACTGTACATAAGAATCACCTCAGGAAATTTTTAAATTCCCAATTATATTAAAATCATTTGGAGTGG
4561 GAACCAGACACCAATATTTGCGAAAGCCTCCAAGGCGGTTCTAATGTCCAGCCAAAGTTGATTATCACTGCTTTATGGCC
4641 AACTAAGGAAACCTTGTTTGTCTGCCTTGGCTGGTGCTCCAGCCCCAGTTCTGAGTGGTCAGGGAAGGCAAGATGTAAGA
4721 TATAGTAATGGTATTTATTCTGTATGTCTCACAGAACAAAAGCATTTGAGAATTTCTGACCAGGCAGTGCTCCATCAACT
4801 CTTAATAATCATCTTTGTGATATTCTCCTATGTGACTTGTCCATCAATTATTCCAATTCAAAGGTCTAGGTTTTTTTTCA
4881 ATTGTCTTACACATGTGACATCACAAGATACCAGAAGTAGCACAGTAAATTCAAGAGCATATAAAGCTAAGTGGAAAACT
4961 AATTCTTCATATTTAGACAGTGGAAATTCTCAAAACAATCATTTGCTAAATTAGGTCCAAATTTATTATTCATTCTTCTT
5041 CTGGAGGAGACATGGGTACCAGGTACCTGTTCTGCTGTAGGTATATTTCACTGGACTTGGTCTTAGCAAAAAGGAAGAAC
5121 AAATCTTCCTTTTTGATTGTTATCTCAATCAAAAGCTCCCAGGGCCACTTGGATTTATTTTCTTAGTCTTTGGACATGTG
5201 TTTAAAGGAAAAGAATACCTGTAACTTCCTATATGACATCCAGTGCCCTGAAAGGGTGCTTACACCTTCAAAAAAGGAGA
5281 GTCCAGCCTATCAAAGGCAGTAACACATAATGAGAAGAAACTCAGAGTTATTGCCTTTCATACTGCTTTCCCTCTGCTGT
5361 TGGCCCACCCTTCTTGACTGCAAAGCCAGAAAATAAACTAGATGGTGGTTTTGGACAATTGTACACAGGAACAGAATCTC
5441 TAATAACCTATAATTTTTAGTACTTAATTATGTGATGTTTTATTCTAGGAAATAAGAAACAGATGACATCATTGATGTAT
5521 CTTTCTTTCATCTTCAGAATTTTTGCATCTTTTCAGAAAATGACAAATTACTATTTTTCTGTTGCACTCAGCAATTGTGA
5601 CTATACTTAACAAAATTCTTGTAGTCTGTAGAGATATCAATAAAATTGTATATGTTTGTACATAAAAAAAAAAAAAAAAA
5681 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuuaAUCCAUCACCGUCACCUu 5'
              ||  ||  | ||||||| 
Target 5' ttcaTATTTA--GACAGTGGAa 3'
 4966 - 4985 146.00 -12.00
2 
miRNA  3' uuuaauccaucACC-GUCACCUu 5'
                     ||| :|||||| 
Target 5' tcacaaactccTGGTTAGTGGAa 3'
 2846 - 2868 131.00 -12.20
3 
miRNA  3' uuuaAUCCAU-CACCGUCACCUu 5'
              ||||||  |  || |||| 
Target 5' gctgTAGGTATATTTCACTGGAc 3'
 5074 - 5096 126.00 -8.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30492004 53 COSMIC
COSN30182772 60 COSMIC
COSN30525655 60 COSMIC
COSN31492747 70 COSMIC
COSN30139032 86 COSMIC
COSN26702305 157 COSMIC
COSN8488022 167 COSMIC
COSN18722453 180 COSMIC
COSN28667626 183 COSMIC
COSN7619900 368 COSMIC
COSN26152351 393 COSMIC
COSN9234146 678 COSMIC
COSN19082269 1004 COSMIC
COSN28201447 1199 COSMIC
COSN20098925 1281 COSMIC
COSN27124870 1339 COSMIC
COSN23232382 1415 COSMIC
COSN23296007 1449 COSMIC
COSN4997462 1487 COSMIC
COSN26888963 1490 COSMIC
COSN22510001 1662 COSMIC
COSN6747758 1667 COSMIC
COSN26733722 1680 COSMIC
COSN16471129 2040 COSMIC
COSN27866407 2112 COSMIC
COSN1911121 2206 COSMIC
COSN6747759 2906 COSMIC
COSN23395379 3020 COSMIC
COSN1911122 3284 COSMIC
COSN21293196 3717 COSMIC
COSN22670539 3733 COSMIC
COSN7814797 4007 COSMIC
COSN15737385 4302 COSMIC
COSN23461965 4858 COSMIC
COSN30053896 5109 COSMIC
COSN20098928 5442 COSMIC
COSN15663023 5563 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs368795584 3 dbSNP
rs1426960638 5 dbSNP
rs1446193221 7 dbSNP
rs1329500398 11 dbSNP
rs748520624 12 dbSNP
rs1392260254 16 dbSNP
rs772463819 19 dbSNP
rs772783093 22 dbSNP
rs186688940 24 dbSNP
rs770137203 32 dbSNP
rs6782025 33 dbSNP
rs1034870976 49 dbSNP
rs759108072 51 dbSNP
rs951347759 60 dbSNP
rs1333647050 64 dbSNP
rs982740326 68 dbSNP
rs6782033 72 dbSNP
rs751815984 86 dbSNP
rs752885983 90 dbSNP
rs1198635877 100 dbSNP
rs1264237861 123 dbSNP
rs1033612586 129 dbSNP
rs756302118 135 dbSNP
rs1211556359 143 dbSNP
rs1181613423 144 dbSNP
rs1468622034 158 dbSNP
rs1248705311 161 dbSNP
rs1199765099 175 dbSNP
rs961018214 177 dbSNP
rs1288964706 180 dbSNP
rs567328294 192 dbSNP
rs1211557087 201 dbSNP
rs975082706 202 dbSNP
rs1331202150 203 dbSNP
rs1227282718 204 dbSNP
rs1472283908 204 dbSNP
rs1186737112 205 dbSNP
rs921010146 213 dbSNP
rs1347844881 215 dbSNP
rs535907941 220 dbSNP
rs1211830420 224 dbSNP
rs1051671256 227 dbSNP
rs924821088 236 dbSNP
rs1324342198 242 dbSNP
rs914115101 250 dbSNP
rs1390050415 255 dbSNP
rs375042433 257 dbSNP
rs546569691 258 dbSNP
rs1054699266 269 dbSNP
rs548996751 283 dbSNP
rs1173231636 290 dbSNP
rs551289084 296 dbSNP
rs948696222 307 dbSNP
rs1251351311 322 dbSNP
rs749662793 331 dbSNP
rs1332335019 332 dbSNP
rs373778927 341 dbSNP
rs772428540 349 dbSNP
rs1431839891 359 dbSNP
rs907254767 361 dbSNP
rs1214918406 372 dbSNP
rs1445193994 374 dbSNP
rs1300264245 376 dbSNP
rs935710682 377 dbSNP
rs771626579 379 dbSNP
rs1338921021 380 dbSNP
rs1300742948 385 dbSNP
rs1218333818 386 dbSNP
rs1284509262 396 dbSNP
rs1366292682 396 dbSNP
rs1320488658 403 dbSNP
rs1361377143 410 dbSNP
rs1429325965 410 dbSNP
rs1334989983 423 dbSNP
rs1413930657 426 dbSNP
rs1050099439 435 dbSNP
rs1347809398 439 dbSNP
rs191555160 448 dbSNP
rs1217944489 451 dbSNP
rs1451117046 452 dbSNP
rs1035244302 457 dbSNP
rs183257477 461 dbSNP
rs1474407163 464 dbSNP
rs1441320075 468 dbSNP
rs1004483184 474 dbSNP
rs1016844851 477 dbSNP
rs1264795444 479 dbSNP
rs1485035726 485 dbSNP
rs962642723 487 dbSNP
rs944661789 488 dbSNP
rs1040690414 491 dbSNP
rs745926484 504 dbSNP
rs768310853 511 dbSNP
rs897690907 512 dbSNP
rs1377970537 514 dbSNP
rs1027958459 526 dbSNP
rs1309921530 527 dbSNP
rs189132056 527 dbSNP
rs1370149872 528 dbSNP
rs1430714090 528 dbSNP
rs1169539745 537 dbSNP
rs1426463666 553 dbSNP
rs1415913599 559 dbSNP
rs1182309723 578 dbSNP
rs986548117 583 dbSNP
rs1474601299 584 dbSNP
rs1254850138 588 dbSNP
rs575116786 589 dbSNP
rs1170740993 590 dbSNP
rs924383370 595 dbSNP
rs934835950 596 dbSNP
rs1483208237 597 dbSNP
rs990760888 607 dbSNP
rs1202903471 613 dbSNP
rs1323815390 617 dbSNP
rs192827171 619 dbSNP
rs914786443 628 dbSNP
rs948959483 637 dbSNP
rs1354112093 645 dbSNP
rs1424622207 646 dbSNP
rs1410488491 648 dbSNP
rs1350120090 654 dbSNP
rs1401302054 655 dbSNP
rs537600696 678 dbSNP
rs1044391079 684 dbSNP
rs907222245 692 dbSNP
rs1165197988 697 dbSNP
rs938706597 698 dbSNP
rs960990276 701 dbSNP
rs1304173619 713 dbSNP
rs554654173 715 dbSNP
rs1021636039 720 dbSNP
rs966910310 730 dbSNP
rs886557988 736 dbSNP
rs574868584 737 dbSNP
rs1213421366 743 dbSNP
rs1343677298 751 dbSNP
rs1240186396 752 dbSNP
rs1287739308 758 dbSNP
rs1229119814 761 dbSNP
rs540315221 764 dbSNP
rs1017182922 765 dbSNP
rs1388801821 768 dbSNP
rs1351123151 774 dbSNP
rs898389627 781 dbSNP
rs996737158 782 dbSNP
rs1326390293 799 dbSNP
rs957135095 800 dbSNP
rs1392240138 805 dbSNP
rs1161200395 806 dbSNP
rs1457326570 809 dbSNP
rs1028218777 810 dbSNP
rs1156311703 820 dbSNP
rs985858211 828 dbSNP
rs185257948 833 dbSNP
rs910257267 842 dbSNP
rs944363392 848 dbSNP
rs1245990016 851 dbSNP
rs1250447830 851 dbSNP
rs761384555 853 dbSNP
rs1485819557 859 dbSNP
rs1259107072 862 dbSNP
rs577503686 863 dbSNP
rs1235474669 870 dbSNP
rs1313022227 872 dbSNP
rs377140566 875 dbSNP
rs1378518174 891 dbSNP
rs1419399067 899 dbSNP
rs775857159 903 dbSNP
rs190181186 904 dbSNP
rs1393342486 923 dbSNP
rs986903686 945 dbSNP
rs1403886054 950 dbSNP
rs1384126014 953 dbSNP
rs1040004975 956 dbSNP
rs1467085074 964 dbSNP
rs769421461 973 dbSNP
rs919186342 977 dbSNP
rs929196918 984 dbSNP
rs1392479964 991 dbSNP
rs1323511911 994 dbSNP
rs772946085 1004 dbSNP
rs1260200387 1011 dbSNP
rs1336815759 1012 dbSNP
rs1202282465 1018 dbSNP
rs1048911370 1026 dbSNP
rs1279898303 1028 dbSNP
rs1209072951 1038 dbSNP
rs1031416138 1040 dbSNP
rs1299603080 1041 dbSNP
rs1227863950 1045 dbSNP
rs1325805565 1050 dbSNP
rs1449628894 1055 dbSNP
rs1310871131 1057 dbSNP
rs1374012459 1060 dbSNP
rs955983872 1067 dbSNP
rs1311731479 1075 dbSNP
rs1002285508 1084 dbSNP
rs1371987777 1085 dbSNP
rs990298577 1086 dbSNP
rs1461763964 1092 dbSNP
rs1265606893 1095 dbSNP
rs144984240 1097 dbSNP
rs1424894059 1113 dbSNP
rs1207802775 1116 dbSNP
rs1289090481 1118 dbSNP
rs948928856 1125 dbSNP
rs1484189401 1135 dbSNP
rs980333031 1143 dbSNP
rs928903084 1147 dbSNP
rs761250888 1152 dbSNP
rs879705483 1153 dbSNP
rs1292178424 1157 dbSNP
rs1412358607 1159 dbSNP
rs1351981865 1160 dbSNP
rs1188509740 1167 dbSNP
rs1001102457 1170 dbSNP
rs1391193685 1178 dbSNP
rs1032534415 1182 dbSNP
rs531946471 1183 dbSNP
rs954189842 1207 dbSNP
rs985931473 1214 dbSNP
rs1427899399 1227 dbSNP
rs1473588738 1228 dbSNP
rs907913921 1230 dbSNP
rs1472025289 1231 dbSNP
rs942117411 1235 dbSNP
rs36028175 1238 dbSNP
rs1181283637 1242 dbSNP
rs1436275014 1246 dbSNP
rs1248232274 1248 dbSNP
rs1038144317 1252 dbSNP
rs898316065 1259 dbSNP
rs996663347 1269 dbSNP
rs1049624085 1270 dbSNP
rs1329896394 1271 dbSNP
rs1279621812 1278 dbSNP
rs1441114675 1279 dbSNP
rs140224012 1280 dbSNP
rs1326010078 1284 dbSNP
rs766345323 1286 dbSNP
rs918917766 1291 dbSNP
rs1007852372 1294 dbSNP
rs1031759117 1297 dbSNP
rs35080941 1297 dbSNP
rs373307568 1302 dbSNP
rs376323103 1304 dbSNP
rs370720737 1305 dbSNP
rs955789556 1309 dbSNP
rs909086608 1310 dbSNP
rs1200467951 1318 dbSNP
rs1379567071 1319 dbSNP
rs1468701776 1334 dbSNP
rs1252313038 1338 dbSNP
rs1011762554 1346 dbSNP
rs1211807513 1360 dbSNP
rs1021409642 1362 dbSNP
rs937855596 1368 dbSNP
rs970202797 1372 dbSNP
rs980300693 1373 dbSNP
rs1348131796 1400 dbSNP
rs928870521 1401 dbSNP
rs751530926 1408 dbSNP
rs1370635566 1412 dbSNP
rs983438402 1423 dbSNP
rs1437981330 1432 dbSNP
rs1457392197 1439 dbSNP
rs1201056167 1455 dbSNP
rs1346274476 1461 dbSNP
rs907884460 1468 dbSNP
rs1042809102 1475 dbSNP
rs902498376 1481 dbSNP
rs1174435212 1482 dbSNP
rs1001158025 1483 dbSNP
rs1440952764 1491 dbSNP
rs1032588406 1492 dbSNP
rs1191483524 1499 dbSNP
rs1424864702 1508 dbSNP
rs1476381282 1516 dbSNP
rs942065031 1518 dbSNP
rs890008252 1522 dbSNP
rs1444706635 1524 dbSNP
rs879338104 1524 dbSNP
rs1391859054 1532 dbSNP
rs1007472649 1538 dbSNP
rs542430280 1539 dbSNP
rs74611337 1548 dbSNP
rs529771870 1551 dbSNP
rs759421034 1556 dbSNP
rs76798196 1557 dbSNP
rs891009139 1559 dbSNP
rs1428738491 1560 dbSNP
rs1302972201 1565 dbSNP
rs1008573272 1567 dbSNP
rs1052764613 1573 dbSNP
rs1434382749 1573 dbSNP
rs1373849253 1577 dbSNP
rs891439496 1578 dbSNP
rs1171552358 1581 dbSNP
rs752759694 1585 dbSNP
rs1420151972 1588 dbSNP
rs984384995 1589 dbSNP
rs1474375948 1590 dbSNP
rs1259083172 1598 dbSNP
rs1021378643 1599 dbSNP
rs1485168133 1600 dbSNP
rs1277687024 1601 dbSNP
rs1207103985 1610 dbSNP
rs1311837193 1622 dbSNP
rs1340901281 1636 dbSNP
rs1272727981 1642 dbSNP
rs1213398625 1659 dbSNP
rs909133895 1667 dbSNP
rs1366204622 1675 dbSNP
rs1294038000 1681 dbSNP
rs1353836090 1681 dbSNP
rs139271391 1681 dbSNP
rs969834496 1682 dbSNP
rs1001664695 1688 dbSNP
rs1035869721 1689 dbSNP
rs1169477354 1690 dbSNP
rs76433731 1690 dbSNP
rs762657746 1692 dbSNP
rs984089368 1695 dbSNP
rs1419910963 1722 dbSNP
rs1165037734 1725 dbSNP
rs778044805 1726 dbSNP
rs949525181 1728 dbSNP
rs1178636225 1729 dbSNP
rs908146123 1731 dbSNP
rs1480752740 1735 dbSNP
rs1232705607 1737 dbSNP
rs963700620 1746 dbSNP
rs1470239926 1748 dbSNP
rs1274314649 1757 dbSNP
rs1232762095 1763 dbSNP
rs1332698346 1772 dbSNP
rs1309215473 1782 dbSNP
rs973413687 1783 dbSNP
rs1257905999 1785 dbSNP
rs531983917 1786 dbSNP
rs902550976 1787 dbSNP
rs1439688728 1788 dbSNP
rs921978530 1792 dbSNP
rs1396637484 1793 dbSNP
rs552055556 1807 dbSNP
rs936663792 1808 dbSNP
rs1053749102 1812 dbSNP
rs1482311232 1814 dbSNP
rs866140255 1815 dbSNP
rs985229610 1818 dbSNP
rs912405050 1828 dbSNP
rs890060503 1852 dbSNP
rs943911410 1862 dbSNP
rs1264094013 1863 dbSNP
rs369086631 1865 dbSNP
rs866833529 1873 dbSNP
rs1489493643 1875 dbSNP
rs537691027 1886 dbSNP
rs1467520726 1892 dbSNP
rs1262605024 1899 dbSNP
rs144287718 1903 dbSNP
rs947033199 1904 dbSNP
rs191598300 1906 dbSNP
rs1237691733 1908 dbSNP
rs1042747851 1909 dbSNP
rs997706232 1916 dbSNP
rs534287271 1924 dbSNP
rs1440133382 1925 dbSNP
rs146501201 1929 dbSNP
rs368087140 1929 dbSNP
rs905578385 1944 dbSNP
rs1290141868 1951 dbSNP
rs115820901 1955 dbSNP
rs950430444 1969 dbSNP
rs1035468473 1973 dbSNP
rs1172656795 1981 dbSNP
rs1455298762 1999 dbSNP
rs1360708696 2008 dbSNP
rs895958953 2010 dbSNP
rs73191771 2012 dbSNP
rs1187216389 2017 dbSNP
rs1015856579 2020 dbSNP
rs1296157120 2028 dbSNP
rs959582769 2041 dbSNP
rs1348834181 2047 dbSNP
rs1280844184 2048 dbSNP
rs1015589044 2051 dbSNP
rs1482626313 2064 dbSNP
rs990736934 2075 dbSNP
rs963663085 2081 dbSNP
rs973340336 2082 dbSNP
rs1361010056 2098 dbSNP
rs1028962865 2099 dbSNP
rs1387342690 2103 dbSNP
rs199616429 2107 dbSNP
rs10212489 2111 dbSNP
rs1295811048 2111 dbSNP
rs970580408 2112 dbSNP
rs987499957 2113 dbSNP
rs1310526584 2121 dbSNP
rs1433201789 2125 dbSNP
rs1375289188 2128 dbSNP
rs1232572941 2129 dbSNP
rs1259790409 2133 dbSNP
rs1287037947 2142 dbSNP
rs752516014 2147 dbSNP
rs184115475 2156 dbSNP
rs1209898781 2171 dbSNP
rs936716013 2174 dbSNP
rs1053816217 2181 dbSNP
rs1228153374 2187 dbSNP
rs1285827841 2189 dbSNP
rs868823700 2191 dbSNP
rs1275807059 2204 dbSNP
rs1416035582 2207 dbSNP
rs556934895 2210 dbSNP
rs556131869 2213 dbSNP
rs1311825889 2214 dbSNP
rs911206951 2214 dbSNP
rs942983889 2223 dbSNP
rs1168848053 2234 dbSNP
rs1031957376 2235 dbSNP
rs1488977013 2238 dbSNP
rs866001442 2241 dbSNP
rs780571804 2242 dbSNP
rs576804310 2243 dbSNP
rs1265836038 2246 dbSNP
rs1047192899 2257 dbSNP
rs1042716952 2258 dbSNP
rs200648438 2265 dbSNP
rs372627394 2272 dbSNP
rs1252450640 2282 dbSNP
rs886199939 2283 dbSNP
rs1005916537 2287 dbSNP
rs576684786 2289 dbSNP
rs937018290 2295 dbSNP
rs1334860305 2305 dbSNP
rs1292119194 2306 dbSNP
rs188019267 2318 dbSNP
rs769388999 2325 dbSNP
rs895606035 2326 dbSNP
rs1391139618 2327 dbSNP
rs772896907 2341 dbSNP
rs1328443314 2343 dbSNP
rs1458165703 2344 dbSNP
rs1417323805 2369 dbSNP
rs1295256838 2383 dbSNP
rs1161500081 2392 dbSNP
rs1365347741 2403 dbSNP
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rs1272034371 2424 dbSNP
rs1207501957 2427 dbSNP
rs1352435219 2431 dbSNP
rs1279702256 2432 dbSNP
rs1238794064 2442 dbSNP
rs147781917 2445 dbSNP
rs756097445 2449 dbSNP
rs1321698674 2470 dbSNP
rs977938643 2473 dbSNP
rs923741236 2487 dbSNP
rs777389462 2488 dbSNP
rs995067205 2489 dbSNP
rs1418086638 2491 dbSNP
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rs989561903 2499 dbSNP
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rs1029226329 2509 dbSNP
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rs1283742650 2513 dbSNP
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rs1273521419 2549 dbSNP
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rs1047251733 2564 dbSNP
rs73855388 2570 dbSNP
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rs1440942371 2582 dbSNP
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rs1037406907 2614 dbSNP
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rs978661726 2629 dbSNP
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rs1406743880 2640 dbSNP
rs1259135391 2645 dbSNP
rs117076702 2649 dbSNP
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rs1276932322 2665 dbSNP
rs1216898560 2673 dbSNP
rs1025038002 2674 dbSNP
rs1056801409 2678 dbSNP
rs1347872648 2689 dbSNP
rs532142408 2690 dbSNP
rs1398183524 2691 dbSNP
rs1357609798 2699 dbSNP
rs906463534 2700 dbSNP
rs554272695 2703 dbSNP
rs1358427915 2714 dbSNP
rs940462750 2729 dbSNP
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rs1420076439 2740 dbSNP
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rs1257904261 2791 dbSNP
rs989277461 2791 dbSNP
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rs757502475 3181 dbSNP
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rs565159021 3564 dbSNP
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rs570950435 3592 dbSNP
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rs962961388 3618 dbSNP
rs1487544291 3622 dbSNP
rs960214648 3624 dbSNP
rs572567063 3626 dbSNP
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rs114879693 3630 dbSNP
rs141079729 3632 dbSNP
rs1229657456 3640 dbSNP
rs570086506 3652 dbSNP
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rs1043720307 3657 dbSNP
rs1297757382 3664 dbSNP
rs1310907232 3670 dbSNP
rs1348318011 3672 dbSNP
rs1204280227 3673 dbSNP
rs1335911829 3681 dbSNP
rs150250945 3687 dbSNP
rs1424327198 3699 dbSNP
rs938021101 3703 dbSNP
rs981592856 3708 dbSNP
rs1453299709 3709 dbSNP
rs1170302086 3710 dbSNP
rs1478481565 3716 dbSNP
rs1055205896 3734 dbSNP
rs896604145 3736 dbSNP
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rs190671121 3747 dbSNP
rs1052126824 3756 dbSNP
rs1211205765 3771 dbSNP
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rs7632907 3775 dbSNP
rs897715310 3777 dbSNP
rs1362225458 3781 dbSNP
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rs1040021862 3809 dbSNP
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rs1164238871 3830 dbSNP
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rs545510610 3877 dbSNP
rs1393321865 3878 dbSNP
rs1187626115 3880 dbSNP
rs1452408575 3884 dbSNP
rs1325749072 3888 dbSNP
rs966193961 3891 dbSNP
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rs1257527852 3902 dbSNP
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rs574171640 3919 dbSNP
rs113562924 3920 dbSNP
rs1378251850 3932 dbSNP
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rs1379404000 3949 dbSNP
rs1448967827 3949 dbSNP
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rs1332980111 3975 dbSNP
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rs770344853 3990 dbSNP
rs925558106 3993 dbSNP
rs1016914743 3995 dbSNP
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rs1165114251 4021 dbSNP
rs937990049 4035 dbSNP
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rs1380062162 4176 dbSNP
rs533129008 4184 dbSNP
rs1157447780 4186 dbSNP
rs946384926 4190 dbSNP
rs1370573829 4196 dbSNP
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rs1474390935 4205 dbSNP
rs921200518 4220 dbSNP
rs1164869508 4240 dbSNP
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rs1218543602 4254 dbSNP
rs1050915281 4258 dbSNP
rs1007144737 4259 dbSNP
rs886924685 4260 dbSNP
rs1313861875 4264 dbSNP
rs1301389683 4268 dbSNP
rs1218057763 4277 dbSNP
rs1017701467 4279 dbSNP
rs1343268081 4283 dbSNP
rs940149336 4285 dbSNP
rs1038425254 4296 dbSNP
rs1360331717 4302 dbSNP
rs965800244 4304 dbSNP
rs1468047475 4305 dbSNP
rs997653811 4313 dbSNP
rs1020729381 4314 dbSNP
rs1393692309 4316 dbSNP
rs1022936284 4319 dbSNP
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rs1334339143 4325 dbSNP
rs1003106363 4328 dbSNP
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rs775470194 4335 dbSNP
rs550301396 4337 dbSNP
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rs990285931 4343 dbSNP
rs1022467075 4350 dbSNP
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rs1249750304 4352 dbSNP
rs1398087309 4355 dbSNP
rs925487739 4367 dbSNP
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rs1484909684 4381 dbSNP
rs529346275 4382 dbSNP
rs866251943 4388 dbSNP
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rs1421707240 4395 dbSNP
rs1264313065 4397 dbSNP
rs1479129060 4410 dbSNP
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rs1168938223 4425 dbSNP
rs1370857979 4439 dbSNP
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rs1341517768 4465 dbSNP
rs1312417429 4470 dbSNP
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rs562420765 4499 dbSNP
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rs1325960037 4527 dbSNP
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rs1003158854 4616 dbSNP
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rs1011772625 4658 dbSNP
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rs770589160 4662 dbSNP
rs1381926261 4672 dbSNP
rs750875716 4677 dbSNP
rs1469537113 4683 dbSNP
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rs551665007 4709 dbSNP
rs1451857061 4713 dbSNP
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rs1172562775 4724 dbSNP
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rs1360933885 4736 dbSNP
rs1455115934 4745 dbSNP
rs758766041 4753 dbSNP
rs1021768590 4758 dbSNP
rs1349102418 4781 dbSNP
rs1276720705 4793 dbSNP
rs1021118547 4796 dbSNP
rs1287068965 4803 dbSNP
rs1384223983 4806 dbSNP
rs1233972253 4807 dbSNP
rs1330753832 4811 dbSNP
rs968231903 4811 dbSNP
rs1362265813 4824 dbSNP
rs1298560072 4830 dbSNP
rs902265452 4832 dbSNP
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rs58006192 4841 dbSNP
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rs1032527754 4855 dbSNP
rs959590184 4857 dbSNP
rs1368857835 4864 dbSNP
rs1264371679 4865 dbSNP
rs986390590 4869 dbSNP
rs1281271283 4870 dbSNP
rs1201518173 4876 dbSNP
rs1233867690 4880 dbSNP
rs1310181938 4881 dbSNP
rs1356335301 4882 dbSNP
rs1214033058 4885 dbSNP
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rs866536334 4891 dbSNP
rs991461110 4893 dbSNP
rs1220745227 4894 dbSNP
rs1341313556 4900 dbSNP
rs1278646200 4906 dbSNP
rs1429686060 4910 dbSNP
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rs1336162947 4913 dbSNP
rs752281383 4920 dbSNP
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rs1025254318 4936 dbSNP
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rs73191773 4961 dbSNP
rs1186308875 4970 dbSNP
rs533171155 4971 dbSNP
rs1474663258 4972 dbSNP
rs755383921 4975 dbSNP
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rs931409432 4990 dbSNP
rs376139100 4992 dbSNP
rs777270326 4993 dbSNP
rs547274227 4997 dbSNP
rs1261366061 5002 dbSNP
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rs1200566666 5015 dbSNP
rs1192650924 5026 dbSNP
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rs943245417 5042 dbSNP
rs1380477693 5047 dbSNP
rs543631378 5057 dbSNP
rs75649166 5063 dbSNP
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rs1285706475 5072 dbSNP
rs1448694049 5083 dbSNP
rs1381894268 5084 dbSNP
rs901796985 5092 dbSNP
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rs1400374385 5101 dbSNP
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rs1407828612 5118 dbSNP
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rs778519686 5128 dbSNP
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rs567791407 5160 dbSNP
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rs559128814 5176 dbSNP
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rs1000636810 5198 dbSNP
rs13095841 5202 dbSNP
rs895293671 5212 dbSNP
rs1312906269 5214 dbSNP
rs1012452624 5217 dbSNP
rs1025647274 5222 dbSNP
rs1297086043 5232 dbSNP
rs1439600208 5233 dbSNP
rs1351220783 5241 dbSNP
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rs1424364667 5245 dbSNP
rs1383762875 5255 dbSNP
rs1161052301 5257 dbSNP
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rs551793389 5266 dbSNP
rs1407377756 5269 dbSNP
rs1175511010 5275 dbSNP
rs771936453 5278 dbSNP
rs764069648 5281 dbSNP
rs1306806216 5282 dbSNP
rs571570469 5288 dbSNP
rs182609805 5291 dbSNP
rs952736498 5302 dbSNP
rs984154412 5307 dbSNP
rs1490143650 5309 dbSNP
rs1289282903 5312 dbSNP
rs139266226 5324 dbSNP
rs865908388 5324 dbSNP
rs556144212 5326 dbSNP
rs1317394300 5327 dbSNP
rs746976935 5332 dbSNP
rs1221511877 5336 dbSNP
rs1369307230 5343 dbSNP
rs1283594469 5345 dbSNP
rs1212575033 5351 dbSNP
rs185756616 5358 dbSNP
rs1300382309 5364 dbSNP
rs1481450797 5367 dbSNP
rs943194756 5370 dbSNP
rs1345043045 5371 dbSNP
rs1157028763 5402 dbSNP
rs1243566503 5403 dbSNP
rs1435040134 5405 dbSNP
rs189727834 5406 dbSNP
rs1199019159 5408 dbSNP
rs1479567347 5423 dbSNP
rs397828138 5441 dbSNP
rs72587260 5441 dbSNP
rs3830201 5443 dbSNP
rs1424112508 5456 dbSNP
rs1195524832 5464 dbSNP
rs1486156509 5464 dbSNP
rs1167058560 5467 dbSNP
rs974012587 5475 dbSNP
rs1415520279 5490 dbSNP
rs1460840773 5497 dbSNP
rs1263188413 5501 dbSNP
rs1171556374 5504 dbSNP
rs1356340333 5505 dbSNP
rs1343208842 5513 dbSNP
rs1440303221 5520 dbSNP
rs919787673 5523 dbSNP
rs182338198 5530 dbSNP
rs974605540 5531 dbSNP
rs1361681459 5532 dbSNP
rs555409898 5533 dbSNP
rs1467998973 5554 dbSNP
rs1359867038 5557 dbSNP
rs980304815 5569 dbSNP
rs1468463275 5573 dbSNP
rs933266536 5584 dbSNP
rs142666785 5587 dbSNP
rs1172577695 5589 dbSNP
rs1416955088 5590 dbSNP
rs1428964669 5592 dbSNP
rs1260776242 5595 dbSNP
rs1291794208 5596 dbSNP
rs1184753974 5600 dbSNP
rs1484164673 5604 dbSNP
rs1334807633 5606 dbSNP
rs1219780637 5607 dbSNP
rs1273168176 5609 dbSNP
rs1202407256 5621 dbSNP
rs1320984361 5625 dbSNP
rs1259652462 5635 dbSNP
rs1227699520 5639 dbSNP
rs1307324020 5649 dbSNP
rs1293853243 5653 dbSNP
rs938721913 5654 dbSNP
rs923584083 5664 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 9515.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuaauccaucaccgUCACCUu 5'
                         |||||| 
Target 5' ---------aagcuaAGUGGAa 3'
 		1 - 13
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000273666.6 | 3UTR | AAGCUAAGUGGAAAACUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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