pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol CBX7   
Synonyms -
Description chromobox 7
Transcript NM_175709   
Expression
Putative miRNA Targets on CBX7
3'UTR of CBX7
(miRNA target sites are highlighted)
>CBX7|NM_175709|3'UTR
   1 ATCACCGTTTTTACTCTTCTTAAACTGTTTTCTTTTGGGCTTGGGGTGGGACTTCCAGAGATAGGGATGGGTTGGGGGCG
  81 GGGTAATTATTTTATTTAAAAAAATACCGAGCAGCAAAAGGGGAGAAGATCCCACTACTCTCCCACCACCTGCCCTTTCT
 161 CTGAGGGACGTTTACCACGAGGCCTCAGGCTGGGGATGGAGAGAGTTGCTCTGGGAGTTGGGGTACCACCCCCAGGGCAG
 241 GATGGGGACAGGATCACCTGCCCGGGACACCACCATTATCATTCTCCTCTAGTGACGCAGCAGCTGGTTCTGGGAGTTAA
 321 AGGAGCATTGGAAGGCCCAAACCCTCTCCCTTGAGTGGCCACCCCAGCCTGGTTGGCTGGTTTTCCCCTTTTCTCTTGTT
 401 TCAATTGGGTCTTTACCTTGAACTCTCCTCTCTGGCTTTGCGGTGGGCTGTGGAGGCTGGTTTTGACCAAAAGTGAGTGG
 481 GGCGGGAGGAAGGGGCAGGAGGAAGGGTTGAGGTTACTTGGGGCGAGTCCCTTCCCCTTCAGAGAGGCTTCTATCCTTCC
 561 CAGGGAGGAGGCGCCGCTGAGACCCTTCTGCTGAGAGCTCTGCCCTCCCCTCATCACCTGGCCTGTGCAGAAACGCTCAT
 641 GCACACCTGGCTGCACAGGTGTGCACGCATTACCCTTCGCGTGTACGTTCCCATGTGCCCCGTGAAAGCATGTGTGGCTG
 721 CAGACGTGTCCACATGGGCCTTGCGAACCTGGGTTAGAAACCCTGGCCAGGCGAACGTGGGGTGATTCACAGCACAAAAG
 801 ACCTCACCACCACACCTGCACTCACCCCACCTTGCATGCACCTTGCTACCTGCTTGCGGCTTTCAGTGGAGGGCAGGGGT
 881 CTGGCACAGGTGCGATGGCACCCCATGCTCCAGGCATACAGATGTGGTTTCTCGGCTGCACCGGGCCAGGCTGCGGGTGT
 961 GCAGGCGTCTGCTAAGTTGTGTGATGTATCAGCACAGGCTTTGAGACGTCTGGACCCTGTCCTTCCTCCCGTGAGGGGTT
1041 CTTGTTCTTTCTGACTCAGGTGACTTTTCAGCCCTTCCAATTCCCCTCTTTTTCTGCCCTCCCCTCCAACTCAGCCAACC
1121 CAGGTGTGGGCAGTCAGGGAGGGAGGGAGTGTCCCACCACGTTCTCAGGGCAGCCCTTGACTCCTAAGCCCCTTCCTCCT
1201 TCCATTCTGCATCCCCTCCCCATCCAACCTAAATGCCACAGCTGGGGCTGAGCTGTATTCCTGTGGAGGGACCTCTGCCG
1281 TGCCTCTCTGAGGTCAGGCTGTGCTGTGTGATGGGCAGGCTTTGCCCCAGCCCACCCCTGGCAAGGTGCACTTGTTTTCT
1361 GGTTTGTACAAGGTGTCCTGGGGGCCCGTGGCTTCCCTGCCAGTGAGGAGTGACTTCTCCCTCTCTTCCAGTCCTGTAGG
1441 GGAGACAAAACCAGATTGGGGGGCCCAAGGGGAGCATGGAAAAGGCCGGCTCCCCTGTCTTTCCTTGGCTGTCAGAGTCA
1521 GGGTAACACACACCAAGAGTGGAGTGCGGCCAGCAAGTTTGAGACCTGCCCGCCCTCCTCGCAGCTCTGCTCTGTGTCCT
1601 CAGGAAGTCACAGAGTCTACTGAGGCAAGGAGAGGGTGATTCTTTCCCCAAATCCCTTCTTCCCTGGTTCCCAAACCAAA
1681 GACAGCCTGCAGCCCTTTCTGCATGGGGTGCTCTGTTGACAGGCTTCCCAGATCCCTGAGTCTCTCTTTCCTTCCTCCTC
1761 GATCTTTAGTTGTCCACGGTCAATTCAGTGCTTCCATTGGGGGACAGTCCCCTCCGGGATGACCTGATTCACCTCCAGCC
1841 CAGGGAATGGAATCTAGAGGAATACGTGGGGTGGGTCTGGACAAGGAGCGGCAGGAATCACCACCCATCTCCAGCTGTGG
1921 AGCCCTGTGGAGGGGAAGGGGAAGCTTGGGGTTCAGAGGGGACTCTTCCAGGAGAGGGGTGCCCAGCGGAGGTAAAGATG
2001 ATAGAGGGTTGTGGGGGGTCTCTAGTTGAATGTTTTGGCCCATGACTTTGGAACATGGCTGGCAGCTTCCAGCAGAAGTC
2081 ACGCTCCCCATCCCCCAGGGGACATAGGACCTTTTTCCTGCTTCCTGGTCACTTTCAAAGAACTATTTGCGCAATCTGTG
2161 GGTCTGTGGATTCACGGGGCTTTCTGTGTGGGTGCTGCAGTTGCTTTTGTCTGCAGCAGCAGGACACATCTTTCCTCTTA
2241 CTCAGCCCTTTATGGCCCATGGGGAACTCCGTGGCTCAGGGAGAGCTGAACTCCAGGGGTGTGACCTGGGACGGGTGGGC
2321 CTGAGGTGCCCAGCTCAGGGCAGCCAGGTGGCTCATGGGCTGTAGTGAGCCAGCTCCCTGGGGGAAAAGGCTGTGGGCCG
2401 TTAGGACCATCCTCCAGGACAGGTGACCTCTATGAGGTCACCTACGGCTGTGGCCGTGCAGGCCTCCTTCCAGCCCAGAG
2481 TGGCCCAGTAGAGCAAGGCAGACAGTGACCTCCACCCCCGCAGCCCTCTTAAAAGGCCAGTACTCTTGGGGGTGGGGGGA
2561 GGGTTTAGAAAGCATTTGCCCATCTGCCTTTCTTTCCCCCAGCCCCCACCCGCTTTGAATGTAGAGACCCGTGGGCACTT
2641 TTCCTTTTGTGGTGGGGGGTGCGGAGGAGGTACCCCCACCCCTGGCACAGCCGCCTGGAATGCAGGACTGTCACTGCTGT
2721 TCGGGTGATGACCTCGTTGCCAAGCTCCTCCTGTCCCCTTGTTCTGGGGGCAGGCGCTGTGCTTCTGTGAGGTGGTTTAG
2801 CTTTTGCTTTCGAAGTGGCCAGCTGCGGCCACCAGGTCTCAGCACAAGAGCGCTTCCTTTGCACAGAATGAGCTTCGAGC
2881 TTTGTTCAGACTAAATGAATGTATCTGGGAGGGGTCGGGGGCACGAGTTGATTCCAAGCACATGCCTTTGCTGAGTGTGT
2961 GTGTGCTGGGAGAGTCAGAGTGGATGTAGAGCGCGGTTTTATTTTTGTACTGACATTGGTAAGAGACTGTATAGCATCTA
3041 TTTATTTAGATGATTTATCTGGTAAATGAGGCAAAAAAATTATTAAAAATACATTAAAGATGATTTAAAAAAAAGAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacGUUUUCAUUAAC--ACCAAAAa 5'
               | |:  |::|||  ||||||| 
Target 5' ccaccCCAGCCTGGTTGGCTGGTTTTc 3'
359 - 385 154.00 -10.80
2
miRNA  3' acCACGUUUUCAUUAAC-ACCAAAAa 5'
            ||| ::  ||::  | ||||||| 
Target 5' cgGTG-GGCTGTGGAGGCTGGTTTTg 3'
441 - 465 146.00 -13.60
3
miRNA  3' acCACGUUUUCAUUAACACCAAAaa 5'
            |||||   ||  || ||||||  
Target 5' agGTGCACTTGT-TTTCTGGTTTgt 3'
1344 - 1367 142.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30124266 1 COSMIC
COSN26969334 6 COSMIC
COSN31579916 27 COSMIC
COSN31959096 46 COSMIC
COSN5455883 48 COSMIC
COSN26156444 51 COSMIC
COSN30118593 71 COSMIC
COSN30188991 76 COSMIC
COSN18744221 79 COSMIC
COSN30129548 97 COSMIC
COSN20094005 122 COSMIC
COSN30644521 128 COSMIC
COSN28201429 286 COSMIC
COSN26399065 296 COSMIC
COSN31961978 348 COSMIC
COSN29792427 884 COSMIC
COSN24936673 935 COSMIC
COSN10030513 995 COSMIC
COSN31563487 1214 COSMIC
COSN27246812 1289 COSMIC
COSN30159547 1344 COSMIC
COSN14585802 2120 COSMIC
COSN25086780 2313 COSMIC
COSN31611144 2358 COSMIC
COSN31486159 2542 COSMIC
COSN26574696 2611 COSMIC
COSN31552124 2630 COSMIC
COSN31555519 2663 COSMIC
COSN31542063 2876 COSMIC
COSN31570582 2890 COSMIC
COSN26734118 2963 COSMIC
COSN20735364 2992 COSMIC
COSN31486541 3023 COSMIC
COSN22895078 3073 COSMIC
COSN31548135 3077 COSMIC
COSN31531217 3091 COSMIC
rs139384 1961 GWAS
rs79502 2313 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1383833536 1 dbSNP
rs745472594 3 dbSNP
rs1445544397 5 dbSNP
rs577995303 6 dbSNP
rs373532639 7 dbSNP
rs1191282399 9 dbSNP
rs199920311 16 dbSNP
rs1164203972 19 dbSNP
rs761838403 22 dbSNP
rs751783481 23 dbSNP
rs781712324 26 dbSNP
rs1323757325 27 dbSNP
rs1304740307 30 dbSNP
rs997627683 35 dbSNP
rs775004892 39 dbSNP
rs1358668459 40 dbSNP
rs1428267297 42 dbSNP
rs1280467943 44 dbSNP
rs563646316 50 dbSNP
rs943415343 62 dbSNP
rs1291985571 64 dbSNP
rs555441105 69 dbSNP
rs55779697 79 dbSNP
rs577242092 80 dbSNP
rs940814016 82 dbSNP
rs895573182 84 dbSNP
rs1445472010 94 dbSNP
rs1219140547 98 dbSNP
rs188130929 104 dbSNP
rs1302592525 105 dbSNP
rs1388831364 107 dbSNP
rs919403014 108 dbSNP
rs374908532 109 dbSNP
rs1305793767 111 dbSNP
rs1163303924 113 dbSNP
rs1406673145 118 dbSNP
rs1049285899 122 dbSNP
rs1299727865 128 dbSNP
rs774915623 129 dbSNP
rs1414575803 132 dbSNP
rs1311550489 148 dbSNP
rs1342748308 155 dbSNP
rs970850403 157 dbSNP
rs371433223 169 dbSNP
rs1348712486 170 dbSNP
rs573659569 175 dbSNP
rs572699757 178 dbSNP
rs959093969 179 dbSNP
rs924004325 186 dbSNP
rs1032206548 191 dbSNP
rs1441669095 206 dbSNP
rs1209933802 217 dbSNP
rs749674607 221 dbSNP
rs978161867 223 dbSNP
rs1253870187 229 dbSNP
rs1000708930 240 dbSNP
rs1188235171 241 dbSNP
rs902455848 243 dbSNP
rs12169578 245 dbSNP
rs1021397324 247 dbSNP
rs1249430393 252 dbSNP
rs374848687 263 dbSNP
rs558104881 264 dbSNP
rs1404874598 266 dbSNP
rs1397113814 269 dbSNP
rs1328773187 271 dbSNP
rs748328735 275 dbSNP
rs1039155795 284 dbSNP
rs1310215464 287 dbSNP
rs1347394098 287 dbSNP
rs1029330548 289 dbSNP
rs943343991 290 dbSNP
rs909186548 294 dbSNP
rs539709412 296 dbSNP
rs1249752651 297 dbSNP
rs1177962814 299 dbSNP
rs1453408816 304 dbSNP
rs6001450 310 dbSNP
rs997150471 317 dbSNP
rs1196384491 327 dbSNP
rs1049112375 328 dbSNP
rs901522464 333 dbSNP
rs929507234 344 dbSNP
rs1236161108 345 dbSNP
rs182184753 353 dbSNP
rs1288175398 356 dbSNP
rs866633085 360 dbSNP
rs1332103973 361 dbSNP
rs112949107 368 dbSNP
rs1385305271 371 dbSNP
rs1303683467 373 dbSNP
rs1332550709 386 dbSNP
rs755086121 395 dbSNP
rs887548638 404 dbSNP
rs146367262 405 dbSNP
rs1350679155 408 dbSNP
rs745853600 421 dbSNP
rs546950900 423 dbSNP
rs534849052 428 dbSNP
rs778927388 430 dbSNP
rs895361246 441 dbSNP
rs1269045507 442 dbSNP
rs1434080455 461 dbSNP
rs1393730115 462 dbSNP
rs979068999 465 dbSNP
rs11089928 467 dbSNP
rs1020859311 469 dbSNP
rs753665526 480 dbSNP
rs763829962 483 dbSNP
rs1393743615 484 dbSNP
rs939339215 486 dbSNP
rs1456470021 491 dbSNP
rs1295459095 492 dbSNP
rs923932121 496 dbSNP
rs1409459077 497 dbSNP
rs901698551 497 dbSNP
rs1338231682 499 dbSNP
rs1042394766 504 dbSNP
rs376998810 506 dbSNP
rs1234761803 508 dbSNP
rs531010845 514 dbSNP
rs1218778379 515 dbSNP
rs1450681776 516 dbSNP
rs1185761833 524 dbSNP
rs915362841 525 dbSNP
rs1204245857 531 dbSNP
rs563512955 537 dbSNP
rs767001193 542 dbSNP
rs1194957732 547 dbSNP
rs1417804588 548 dbSNP
rs1287347857 550 dbSNP
rs921846116 552 dbSNP
rs976416103 553 dbSNP
rs1369184404 560 dbSNP
rs1453317893 565 dbSNP
rs1296587317 566 dbSNP
rs114437699 573 dbSNP
rs550401025 575 dbSNP
rs1004590156 576 dbSNP
rs773676411 584 dbSNP
rs937723018 591 dbSNP
rs144335590 593 dbSNP
rs1353823467 596 dbSNP
rs1321871121 598 dbSNP
rs1238891232 603 dbSNP
rs979056254 605 dbSNP
rs1012393539 607 dbSNP
rs1217849794 609 dbSNP
rs966385989 616 dbSNP
rs766910686 617 dbSNP
rs1184180452 623 dbSNP
rs1056664523 625 dbSNP
rs1004186242 628 dbSNP
rs1021270791 634 dbSNP
rs76435236 635 dbSNP
rs1404837775 640 dbSNP
rs1334298472 644 dbSNP
rs1358423510 649 dbSNP
rs1445732346 653 dbSNP
rs1304522561 659 dbSNP
rs1379189607 666 dbSNP
rs368540520 667 dbSNP
rs1306581593 669 dbSNP
rs946729169 672 dbSNP
rs1278354708 673 dbSNP
rs915284079 674 dbSNP
rs768081972 678 dbSNP
rs931803163 679 dbSNP
rs1386313032 680 dbSNP
rs541021237 680 dbSNP
rs975963522 681 dbSNP
rs1027781299 686 dbSNP
rs993478419 687 dbSNP
rs1424127943 689 dbSNP
rs1457561728 701 dbSNP
rs763510061 702 dbSNP
rs1359706030 710 dbSNP
rs149625059 712 dbSNP
rs983081740 717 dbSNP
rs1161649727 718 dbSNP
rs1472621778 720 dbSNP
rs1446979624 722 dbSNP
rs1273894246 725 dbSNP
rs1365866291 732 dbSNP
rs1046161266 733 dbSNP
rs1185457621 734 dbSNP
rs1317819209 739 dbSNP
rs1463607596 743 dbSNP
rs950306531 744 dbSNP
rs761990100 745 dbSNP
rs1245224848 752 dbSNP
rs894720714 756 dbSNP
rs1055933377 760 dbSNP
rs1288216313 761 dbSNP
rs1207674504 762 dbSNP
rs4820369 763 dbSNP
rs1465710355 772 dbSNP
rs1027378893 773 dbSNP
rs1284455799 776 dbSNP
rs576317580 777 dbSNP
rs1438228331 790 dbSNP
rs959176773 797 dbSNP
rs1035596784 802 dbSNP
rs1340373908 811 dbSNP
rs1217270641 813 dbSNP
rs979172418 814 dbSNP
rs1362476704 819 dbSNP
rs1318644403 820 dbSNP
rs945028919 821 dbSNP
rs1003703124 823 dbSNP
rs1453524099 836 dbSNP
rs976157592 841 dbSNP
rs965957485 848 dbSNP
rs1487847097 850 dbSNP
rs902741278 854 dbSNP
rs138469423 857 dbSNP
rs748451369 858 dbSNP
rs893818963 864 dbSNP
rs1475721747 866 dbSNP
rs713841 867 dbSNP
rs1411066141 868 dbSNP
rs1406737683 870 dbSNP
rs1323817423 871 dbSNP
rs1321287604 893 dbSNP
rs572298128 901 dbSNP
rs1404587615 902 dbSNP
rs553132150 903 dbSNP
rs1448006459 904 dbSNP
rs34815437 905 dbSNP
rs932708638 905 dbSNP
rs901296075 910 dbSNP
rs111341586 911 dbSNP
rs1229045459 912 dbSNP
rs12169231 921 dbSNP
rs527689996 927 dbSNP
rs1352659473 929 dbSNP
rs747117830 931 dbSNP
rs1014678446 932 dbSNP
rs907754008 933 dbSNP
rs1189737917 942 dbSNP
rs112356825 943 dbSNP
rs1235176879 947 dbSNP
rs189861152 951 dbSNP
rs930575612 953 dbSNP
rs920236390 954 dbSNP
rs567501535 955 dbSNP
rs1379339394 961 dbSNP
rs959375242 963 dbSNP
rs749203514 966 dbSNP
rs982203417 967 dbSNP
rs1386207563 976 dbSNP
rs1414332727 983 dbSNP
rs1332783202 994 dbSNP
rs1292032886 999 dbSNP
rs904727046 1000 dbSNP
rs1224338598 1002 dbSNP
rs1041880077 1007 dbSNP
rs145909002 1007 dbSNP
rs966865520 1008 dbSNP
rs1273345426 1009 dbSNP
rs777582858 1013 dbSNP
rs755896498 1022 dbSNP
rs1276448152 1025 dbSNP
rs1443605527 1026 dbSNP
rs186133207 1030 dbSNP
rs73884820 1031 dbSNP
rs183367249 1032 dbSNP
rs1435414370 1042 dbSNP
rs1364681311 1048 dbSNP
rs1331530072 1050 dbSNP
rs1028741199 1053 dbSNP
rs1465873693 1053 dbSNP
rs996892237 1057 dbSNP
rs113318157 1066 dbSNP
rs951956660 1067 dbSNP
rs559988904 1069 dbSNP
rs780909934 1076 dbSNP
rs1336077500 1099 dbSNP
rs971893505 1100 dbSNP
rs1272899490 1101 dbSNP
rs141924798 1102 dbSNP
rs886259806 1103 dbSNP
rs1256867766 1110 dbSNP
rs1411760201 1117 dbSNP
rs1456078581 1129 dbSNP
rs1043201166 1132 dbSNP
rs1024844379 1135 dbSNP
rs1200082132 1135 dbSNP
rs1432272203 1139 dbSNP
rs1191183379 1140 dbSNP
rs547735359 1147 dbSNP
rs930543026 1149 dbSNP
rs1481046948 1152 dbSNP
rs1478558102 1160 dbSNP
rs191399964 1161 dbSNP
rs754516330 1168 dbSNP
rs1481840069 1170 dbSNP
rs1330712053 1175 dbSNP
rs1390250213 1176 dbSNP
rs561632250 1178 dbSNP
rs1321328222 1196 dbSNP
rs751108078 1210 dbSNP
rs990855893 1216 dbSNP
rs1347244201 1217 dbSNP
rs1223973886 1222 dbSNP
rs1321884274 1235 dbSNP
rs937692755 1237 dbSNP
rs1315481515 1239 dbSNP
rs1308757950 1241 dbSNP
rs1219896568 1245 dbSNP
rs1251429164 1247 dbSNP
rs1000373209 1261 dbSNP
rs1207767647 1263 dbSNP
rs1269829590 1269 dbSNP
rs927677501 1271 dbSNP
rs543574778 1273 dbSNP
rs1422148793 1275 dbSNP
rs1479112454 1278 dbSNP
rs1323955431 1279 dbSNP
rs529902478 1280 dbSNP
rs1368034351 1290 dbSNP
rs1021062068 1295 dbSNP
rs576181283 1301 dbSNP
rs1165230094 1303 dbSNP
rs1367151074 1305 dbSNP
rs1405359951 1312 dbSNP
rs989648356 1316 dbSNP
rs958525749 1319 dbSNP
rs1350061290 1333 dbSNP
rs1308871399 1343 dbSNP
rs1444394876 1344 dbSNP
rs1041835606 1359 dbSNP
rs1028582423 1371 dbSNP
rs1242084561 1374 dbSNP
rs1357567629 1377 dbSNP
rs997211687 1380 dbSNP
rs965425498 1387 dbSNP
rs1019654725 1388 dbSNP
rs5750753 1390 dbSNP
rs1472469403 1391 dbSNP
rs34538375 1395 dbSNP
rs370866596 1402 dbSNP
rs1386057371 1410 dbSNP
rs55721436 1412 dbSNP
rs879429428 1416 dbSNP
rs930507035 1419 dbSNP
rs994687131 1428 dbSNP
rs1358462815 1431 dbSNP
rs1455221995 1435 dbSNP
rs899036584 1442 dbSNP
rs920518226 1443 dbSNP
rs1377746414 1451 dbSNP
rs79503 1456 dbSNP
rs937642407 1458 dbSNP
rs1383043916 1463 dbSNP
rs1239055792 1465 dbSNP
rs1284323628 1467 dbSNP
rs927623051 1471 dbSNP
rs1264963766 1474 dbSNP
rs1217063842 1480 dbSNP
rs554037245 1483 dbSNP
rs1328240449 1484 dbSNP
rs1202222641 1485 dbSNP
rs533054460 1487 dbSNP
rs1046073214 1488 dbSNP
rs1177006381 1494 dbSNP
rs1378186542 1495 dbSNP
rs745616067 1497 dbSNP
rs945127407 1498 dbSNP
rs913688957 1499 dbSNP
rs989574725 1505 dbSNP
rs1358474134 1510 dbSNP
rs958234707 1511 dbSNP
rs1377034580 1519 dbSNP
rs187013649 1528 dbSNP
rs1157913627 1537 dbSNP
rs1464526846 1543 dbSNP
rs1302286168 1544 dbSNP
rs573995189 1547 dbSNP
rs921491833 1548 dbSNP
rs1445499994 1551 dbSNP
rs975677762 1552 dbSNP
rs1375922772 1553 dbSNP
rs1034288160 1554 dbSNP
rs966037891 1555 dbSNP
rs1319141227 1565 dbSNP
rs1301070670 1566 dbSNP
rs1310940821 1570 dbSNP
rs1019623462 1571 dbSNP
rs1004248821 1572 dbSNP
rs765757865 1573 dbSNP
rs375132757 1574 dbSNP
rs978742213 1578 dbSNP
rs56249622 1580 dbSNP
rs1424274303 1581 dbSNP
rs1431366354 1589 dbSNP
rs1020535312 1591 dbSNP
rs1010387274 1592 dbSNP
rs776798081 1598 dbSNP
rs1355895908 1602 dbSNP
rs1442557202 1608 dbSNP
rs1180735275 1614 dbSNP
rs1444723481 1615 dbSNP
rs150208006 1616 dbSNP
rs1009041103 1619 dbSNP
rs1284507328 1632 dbSNP
rs866137652 1638 dbSNP
rs1055399622 1642 dbSNP
rs1216843411 1643 dbSNP
rs1275266804 1646 dbSNP
rs888872300 1654 dbSNP
rs868446954 1656 dbSNP
rs930328690 1660 dbSNP
rs1217702573 1666 dbSNP
rs1201441782 1674 dbSNP
rs1269562521 1675 dbSNP
rs1477481279 1676 dbSNP
rs1167898258 1677 dbSNP
rs1421100666 1679 dbSNP
rs1002110359 1683 dbSNP
rs1348449308 1689 dbSNP
rs1407177701 1699 dbSNP
rs899079676 1703 dbSNP
rs906500780 1704 dbSNP
rs1340428179 1711 dbSNP
rs1046040321 1712 dbSNP
rs376985754 1719 dbSNP
rs1385151734 1728 dbSNP
rs1296035665 1729 dbSNP
rs1036304453 1732 dbSNP
rs940519985 1742 dbSNP
rs1292299195 1743 dbSNP
rs1435068884 1744 dbSNP
rs1190937569 1751 dbSNP
rs917039442 1755 dbSNP
rs1475468734 1760 dbSNP
rs945053325 1764 dbSNP
rs992691884 1771 dbSNP
rs768955150 1776 dbSNP
rs913615401 1777 dbSNP
rs140992781 1778 dbSNP
rs1164593631 1779 dbSNP
rs775690646 1788 dbSNP
rs936806648 1791 dbSNP
rs116395258 1797 dbSNP
rs1447435340 1800 dbSNP
rs976025459 1802 dbSNP
rs968716211 1809 dbSNP
rs1247073178 1810 dbSNP
rs965649424 1815 dbSNP
rs1020481156 1816 dbSNP
rs912825179 1821 dbSNP
rs989440481 1832 dbSNP
rs1203260108 1839 dbSNP
rs982740046 1841 dbSNP
rs951377350 1847 dbSNP
rs1286296939 1854 dbSNP
rs1027040478 1865 dbSNP
rs772015675 1866 dbSNP
rs1240791136 1873 dbSNP
rs974169858 1877 dbSNP
rs1446079795 1878 dbSNP
rs965676854 1889 dbSNP
rs1380014510 1890 dbSNP
rs1468948702 1893 dbSNP
rs1160762083 1902 dbSNP
rs1020162643 1905 dbSNP
rs959069470 1907 dbSNP
rs1033518336 1910 dbSNP
rs1334778825 1911 dbSNP
rs1408392853 1917 dbSNP
rs1453574435 1927 dbSNP
rs1308829055 1931 dbSNP
rs1002482419 1938 dbSNP
rs1262377960 1944 dbSNP
rs906426922 1949 dbSNP
rs1281118470 1951 dbSNP
rs139384 1961 dbSNP
rs1218644733 1962 dbSNP
rs1260631758 1966 dbSNP
rs1462279294 1969 dbSNP
rs1487388505 1970 dbSNP
rs1203858046 1972 dbSNP
rs1237226111 1974 dbSNP
rs1265067692 1975 dbSNP
rs139383 1987 dbSNP
rs1477948561 2001 dbSNP
rs994487072 2006 dbSNP
rs1431474411 2008 dbSNP
rs34963492 2012 dbSNP
rs1036040256 2013 dbSNP
rs529543991 2014 dbSNP
rs1394576009 2016 dbSNP
rs1393415970 2019 dbSNP
rs36043337 2019 dbSNP
rs940578169 2019 dbSNP
rs181883834 2022 dbSNP
rs1053885261 2039 dbSNP
rs895734916 2042 dbSNP
rs1057360480 2043 dbSNP
rs937215953 2048 dbSNP
rs936430591 2051 dbSNP
rs927365060 2058 dbSNP
rs899613626 2061 dbSNP
rs710191 2082 dbSNP
rs113261288 2083 dbSNP
rs189833827 2084 dbSNP
rs879094049 2087 dbSNP
rs913212301 2093 dbSNP
rs1367415391 2094 dbSNP
rs1170042513 2095 dbSNP
rs1371476642 2098 dbSNP
rs12166266 2099 dbSNP
rs710190 2106 dbSNP
rs1404146241 2108 dbSNP
rs1315657188 2112 dbSNP
rs779651756 2118 dbSNP
rs1301109720 2123 dbSNP
rs757971138 2128 dbSNP
rs919923123 2131 dbSNP
rs1166126445 2132 dbSNP
rs1294149665 2136 dbSNP
rs1324180837 2140 dbSNP
rs749898867 2143 dbSNP
rs1229094436 2145 dbSNP
rs577916310 2150 dbSNP
rs527501245 2151 dbSNP
rs1220687411 2153 dbSNP
rs1034856957 2157 dbSNP
rs560057394 2161 dbSNP
rs781175467 2163 dbSNP
rs1291591687 2175 dbSNP
rs994557607 2179 dbSNP
rs1281404773 2180 dbSNP
rs1430405847 2190 dbSNP
rs970553976 2197 dbSNP
rs1368086554 2199 dbSNP
rs1423030082 2201 dbSNP
rs556381893 2211 dbSNP
rs1200388989 2217 dbSNP
rs1367292798 2219 dbSNP
rs1009426376 2223 dbSNP
rs754251959 2226 dbSNP
rs1288235359 2228 dbSNP
rs1383381271 2230 dbSNP
rs892421710 2238 dbSNP
rs1295732528 2241 dbSNP
rs1031998398 2242 dbSNP
rs1000946576 2243 dbSNP
rs1381568555 2244 dbSNP
rs113721201 2245 dbSNP
rs59006921 2245 dbSNP
rs1317529851 2247 dbSNP
rs899540712 2252 dbSNP
rs1039875952 2255 dbSNP
rs1487161877 2256 dbSNP
rs1001312760 2259 dbSNP
rs1255633230 2260 dbSNP
rs764345288 2270 dbSNP
rs1042889848 2277 dbSNP
rs947436322 2283 dbSNP
rs913324986 2284 dbSNP
rs944157720 2289 dbSNP
rs1053520349 2293 dbSNP
rs186480693 2294 dbSNP
rs912788534 2295 dbSNP
rs985758855 2297 dbSNP
rs1338320034 2298 dbSNP
rs1047283203 2306 dbSNP
rs1383941806 2310 dbSNP
rs775568878 2312 dbSNP
rs79502 2313 dbSNP
rs386352909 2316 dbSNP
rs1319239374 2321 dbSNP
rs555388949 2326 dbSNP
rs974068402 2328 dbSNP
rs543405586 2330 dbSNP
rs1205760027 2338 dbSNP
rs927378894 2345 dbSNP
rs1243940900 2349 dbSNP
rs1457520463 2353 dbSNP
rs1176397081 2354 dbSNP
rs1299779480 2356 dbSNP
rs1420731730 2359 dbSNP
rs575990024 2360 dbSNP
rs759625499 2365 dbSNP
rs981504833 2367 dbSNP
rs971483532 2375 dbSNP
rs974239524 2385 dbSNP
rs1467805209 2387 dbSNP
rs1428548819 2389 dbSNP
rs1176841222 2391 dbSNP
rs1441104244 2392 dbSNP
rs1296809290 2396 dbSNP
rs1375995164 2399 dbSNP
rs111516725 2400 dbSNP
rs1283235541 2406 dbSNP
rs5757492 2417 dbSNP
rs987968950 2420 dbSNP
rs1181806528 2422 dbSNP
rs956587690 2430 dbSNP
rs1438461628 2433 dbSNP
rs867445835 2435 dbSNP
rs1004939500 2436 dbSNP
rs769750522 2445 dbSNP
rs1202698015 2446 dbSNP
rs180803979 2450 dbSNP
rs762671356 2456 dbSNP
rs879731267 2462 dbSNP
rs1001384098 2470 dbSNP
rs1479444816 2471 dbSNP
rs1200946145 2482 dbSNP
rs1429463665 2483 dbSNP
rs143128201 2488 dbSNP
rs17000767 2489 dbSNP
rs1167901198 2495 dbSNP
rs1264306841 2496 dbSNP
rs1356596884 2509 dbSNP
rs1462784372 2514 dbSNP
rs867335099 2516 dbSNP
rs554048268 2519 dbSNP
rs1407368328 2520 dbSNP
rs536188385 2520 dbSNP
rs1327594343 2527 dbSNP
rs1286062439 2528 dbSNP
rs1237923676 2535 dbSNP
rs73884818 2536 dbSNP
rs747982845 2540 dbSNP
rs1047255325 2552 dbSNP
rs994348009 2553 dbSNP
rs898709771 2554 dbSNP
rs1337330338 2555 dbSNP
rs1470826442 2556 dbSNP
rs944023484 2561 dbSNP
rs1184295086 2562 dbSNP
rs1421172386 2579 dbSNP
rs1428805521 2582 dbSNP
rs891099094 2587 dbSNP
rs1364106012 2592 dbSNP
rs1386270617 2594 dbSNP
rs1158181053 2595 dbSNP
rs56205032 2596 dbSNP
rs1365793281 2599 dbSNP
rs531335229 2602 dbSNP
rs1428688239 2603 dbSNP
rs1272051074 2606 dbSNP
rs1362908492 2607 dbSNP
rs1245607089 2609 dbSNP
rs576575530 2610 dbSNP
rs1045732936 2611 dbSNP
rs950129749 2612 dbSNP
rs1257331562 2617 dbSNP
rs1224572678 2624 dbSNP
rs913326914 2630 dbSNP
rs779588389 2631 dbSNP
rs1243410205 2634 dbSNP
rs115472684 2635 dbSNP
rs184792250 2654 dbSNP
rs1383717479 2659 dbSNP
rs372908738 2662 dbSNP
rs764833743 2663 dbSNP
rs560324772 2678 dbSNP
rs1399529410 2679 dbSNP
rs1017948401 2680 dbSNP
rs1350897071 2685 dbSNP
rs979746509 2688 dbSNP
rs745405660 2692 dbSNP
rs566886290 2693 dbSNP
rs955076499 2695 dbSNP
rs1176726597 2701 dbSNP
rs1025402844 2704 dbSNP
rs1349863037 2705 dbSNP
rs200799058 2709 dbSNP
rs1285674694 2714 dbSNP
rs757889020 2721 dbSNP
rs898673441 2723 dbSNP
rs1315642798 2725 dbSNP
rs1462416008 2732 dbSNP
rs1188664096 2735 dbSNP
rs1011346065 2736 dbSNP
rs891655127 2738 dbSNP
rs1412742570 2742 dbSNP
rs1038562859 2747 dbSNP
rs1002176308 2752 dbSNP
rs1469387215 2753 dbSNP
rs1174425908 2756 dbSNP
rs1362742535 2761 dbSNP
rs1422802802 2766 dbSNP
rs1453734335 2767 dbSNP
rs1334486991 2771 dbSNP
rs1334960474 2775 dbSNP
rs1031934602 2776 dbSNP
rs1281244261 2781 dbSNP
rs1317322267 2782 dbSNP
rs1329820087 2790 dbSNP
rs1008286439 2794 dbSNP
rs372722376 2795 dbSNP
rs1387339104 2811 dbSNP
rs1200683966 2812 dbSNP
rs1272674372 2814 dbSNP
rs1049721184 2821 dbSNP
rs1184556630 2824 dbSNP
rs529977523 2827 dbSNP
rs932671547 2838 dbSNP
rs1045674082 2852 dbSNP
rs8136600 2853 dbSNP
rs1038664855 2857 dbSNP
rs891857170 2863 dbSNP
rs1407963310 2865 dbSNP
rs533296614 2876 dbSNP
rs544057546 2877 dbSNP
rs936126721 2891 dbSNP
rs1404261598 2909 dbSNP
rs189822736 2916 dbSNP
rs925087940 2917 dbSNP
rs979327040 2918 dbSNP
rs942606481 2921 dbSNP
rs142205855 2924 dbSNP
rs759437472 2925 dbSNP
rs1207770049 2926 dbSNP
rs1358069842 2928 dbSNP
rs986427278 2931 dbSNP
rs1250448823 2937 dbSNP
rs979736708 2939 dbSNP
rs1291931999 2945 dbSNP
rs778182544 2953 dbSNP
rs955045204 2958 dbSNP
rs1025371031 2959 dbSNP
rs1490329274 2966 dbSNP
rs969718862 2969 dbSNP
rs147635746 2970 dbSNP
rs1021482330 2976 dbSNP
rs962516350 2986 dbSNP
rs1371503736 2988 dbSNP
rs1476521033 2990 dbSNP
rs764587930 2992 dbSNP
rs185237788 2993 dbSNP
rs192990020 2994 dbSNP
rs1024529626 2995 dbSNP
rs1386801982 3008 dbSNP
rs1294254699 3010 dbSNP
rs1324255706 3015 dbSNP
rs1008486283 3025 dbSNP
rs1366448884 3031 dbSNP
rs1014179544 3034 dbSNP
rs756420830 3035 dbSNP
rs1244384683 3036 dbSNP
rs1053070947 3040 dbSNP
rs753045994 3041 dbSNP
rs1204571328 3043 dbSNP
rs536062092 3048 dbSNP
rs1259748604 3053 dbSNP
rs569180837 3056 dbSNP
rs904638416 3057 dbSNP
rs1419357866 3059 dbSNP
rs1262112479 3064 dbSNP
rs1390531884 3066 dbSNP
rs1169059980 3067 dbSNP
rs1476591737 3072 dbSNP
rs575040344 3077 dbSNP
rs1370065145 3078 dbSNP
rs1458355727 3079 dbSNP
rs1038398226 3080 dbSNP
rs1287781795 3080 dbSNP
rs942553796 3082 dbSNP
rs1196811860 3092 dbSNP
rs1483975704 3101 dbSNP
rs911120600 3102 dbSNP
rs963276671 3105 dbSNP
rs986731200 3107 dbSNP
rs1244179175 3114 dbSNP
rs1043804 3115 dbSNP
rs1315288229 3115 dbSNP
rs563963080 3115 dbSNP
rs933925703 3119 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 23492.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000216133.5 | 3UTR | GAGCGCGGUUUUAUUUUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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