pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-3p
Sequence 52| ACCUCCUGUGUGCAUGGAUUA |72
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1221699333 1 dbSNP
rs781893004 6 dbSNP
rs180785970 8 dbSNP
rs1272406504 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CMTM6   
Synonyms CKLFSF6, PRO2219
Description CKLF like MARVEL transmembrane domain containing 6
Transcript NM_017801   
Expression
Putative miRNA Targets on CMTM6
3'UTR of CMTM6
(miRNA target sites are highlighted)
>CMTM6|NM_017801|3'UTR
   1 AGACTCTGGGGAGCAGATGTTACCTAAGGTAGTGACCCTGCATTGTGGTGCCTGAGCCCTGGCAGAAGCTCTTGTAAAAT
  81 TTGTTAATTGTTTAAACCACTTCTTTTGGAGAGCAAGGGGAAGGTCAAGAAGGCAGTTTTATCAATATTGTGTCAGTCAC
 161 CACAAAGTAGGCCAGATAAGTTAAAAAAAATTTTTTTTTAAATAATAATTGAAACTTATCTCAAATGGAGATTTTGGTGG
 241 GAGGAGGAGAAAACAATTGTTTTTAAATCACACAGCTCAACGGTTGATAAATGATTCTGTCATTCTGTTACAGGTCATTC
 321 TTTTACTAGGCTTAGCTTCCAAATTATGCTTTATAGCTGTATAAACATCGTGATTATATTCATCTACTTAGAAATTGTTT
 401 TATTTTTAAATTAATTTGCTTAGCTGTTTGTTTTGATGCTTAGATTATGTTCTGTTAATGGGAATTTAACATATTTAAGA
 481 AACCAATATTTAAAATGTTGGTCTAGGTTTTTTTCCTTAACATATATTACCAGGCTTTACTGTATTTCACTCAGCCTTAA
 561 ATGTTATAATATTTTTGGATAACGGTTATTAATTCTTTGAGACCTTCGTATAGCCTATAAAATGTATGGGAGATGTTGGT
 641 ATTTTATGTGTATAAAAGCAACAATATCAGCAACTTCGTGTTTATACTGCACCTTGGTTGTTGATGTCAAGTAAAAAAAA
 721 GATTGTTTTGTAACACATAAAAAAATGGAAGAAACTGATACCACACCTAAGGACCAAAGATAAGAAAGACTTTTTGCCCA
 801 AGACAGTGAAAGTAATTATAAAAACAAGCTTTGACCACTTACCAAGTATCTGAAGAGATGAGTTCATACTATGATTTAGA
 881 AAGTGGTTCAATTCCCCTGTTGGCATATGATTATTTTTACTAAAATTAATACAGCTCTGTGGGTCTTCCTTAGTGTTTTC
 961 TTTGAAGCCAATCTGTTTTTTTTAGGACACCAGCCTTTGGTTTTTCATCTGTTCGAGATGCCTCTTCTCTGTCTCCTTAT
1041 CAGATAGAAATGGAGTCATGTGCTGCTGCTTCATCTAGCAGAGGTTGGCCTCTGGCTCTGACACTTTTTGTCAGTTGTCT
1121 TTAGGTGGTCCTGAATCTTGGGCCCTTTTGATTGTGAATACTGTGTAGCAGGATCTTGAGAGTCCTTGTTCTTACATAGG
1201 CATTGCTCTAGTTTGTCTTTGGCAAAAAAAAAAAAAAAAAAAAGTAAATATCCAGGGAACCCTGCCCAGACTAATACTGT
1281 TGGTGGCATAAGAGAATCAAGCCATTCTCAAGAGATAACTTCATAACCAGAATTGTCTGTTGGCTAGCAGCTGTCACAGA
1361 TAGGCAGGGCACTTGGGATATGACCTTTCTGTCCAGGTGATTCACAGACTAGACCTTTCTTATCCTCCTCCTAGAGTTTT
1441 GACTTGGGACTCTAGTGTTAAGATGATGAGCCCGTGCATCAGGTCCTTCTGCACTTTGGTGGAAGTCTCCCAGGGTAGGT
1521 TTCCTATTTGAAACAGTGGAATCATGTTTCCAGTGATAAAGTTTAATGACCTCATCCTTTTTTTTTTTTCTCATCTGCCA
1601 TTTGTGTGTCTTAGATGGGTTTTAATTGCATGAATGTGGCTAATGTGGTTCTCAGAAATTGGTCAGTATGGCCCAACATA
1681 GCTTCTGCTCTGTCTTACTGACTCAATACCTTTAGGATTTGTATCAGAGTTTGGATACTAGTGTTAGTGGTGGTGTCACC
1761 ACTACTTAATTGGGAGATAATGAAACCAATCATGGATGCTGTTTTTATTGGGCATGTCATCTAAGAGAGGAGAAATAGCT
1841 GGGTTTTGGGTCTAATTATGAATAAGGACTGATTCAGAAAACGAGTTTATGGTAGGTAGACTAAAGTTTCACATCAGACT
1921 GTACCATTGTGATTTAGACCTATCTAAAATTCAGAGCATATCATCTGGGCTACCTCAGGGTCACCACCCATGTATTGGGC
2001 TTAGTCAGGATTGACAGATACATTCTCAGCTGGCCTGTCATATAAAACATACTGTCATTGAGCTTAAGCTCCGCTTGTTC
2081 TGAGGTTTCACCTCCATGTGTTTCATTGGTGCAAAAGTGGATCTCTTAGTTGGTCACTTAATTCTTTCTTTTTCAGAAAG
2161 ATAGTATGTTCACTGGTATATTTGGTCACTCTTAGAACCTTCCTTCACATTGTTTTTTATGGGACCCATGAATGGTTAGC
2241 CTTTCTTTTCTATTGTAGAAGGAAATAAATAGGAGTAAAAAGACCATTGTAGTAAATAAGTTCAAGGGGAACTTGGGACC
2321 AGAAACCACTGTTATGTACAAAAAAATGGCAAATTCAATAAACTCAAATTTAAAATAATTTTTAAATTAACAGTTATGAT
2401 AAATTTTATATTTTATACAAATAGATTGCTTAGAATGGTTCTCAAGAATTATAAGAGAAATGAACTCACAGTACAAAAAT
2481 TTTATAATTACTATACTTGTGTTTTGTTTGGGGGCTGGGAAATGTATTTTTACATTGTAGCCAATCATTTTATATTTGTC
2561 AATTTAAATCTTATGGGTCTTTTTTTTTTATCTCTCTTGATGTCAGATTTTATAGTCTTTTTAAATAAATCCATTTAATT
2641 AAAACGTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuagguacgugugUCCUCCa 5'
                        |||||| 
Target 5' gagattttggtgggAGGAGGa 3'
228 - 248 120.00 -9.60
2
miRNA  3' auUA-GGUACGUGUGUCCUcca 5'
            || |::||:| :|||||   
Target 5' gaATACTGTGTA-GCAGGAtct 3'
1156 - 1176 118.00 -11.22
3
miRNA  3' auuagguacGUGUGUCCUCca 5'
                   :| |:|||||  
Target 5' agaaggaaaTAAATAGGAGta 3'
2257 - 2277 112.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30503578 8 COSMIC
COSN30492803 17 COSMIC
COSN30459316 24 COSMIC
COSN31505950 48 COSMIC
COSN28863071 62 COSMIC
COSN31524809 76 COSMIC
COSN6765877 87 COSMIC
COSN31610152 182 COSMIC
COSN31599986 187 COSMIC
COSN31567066 190 COSMIC
COSN31546211 191 COSMIC
COSN26193279 449 COSMIC
COSN31608244 677 COSMIC
COSN31535605 686 COSMIC
COSN1275992 976 COSMIC
COSN31530559 1014 COSMIC
COSN25866811 1015 COSMIC
COSN20120094 1043 COSMIC
COSN29002250 1095 COSMIC
COSN25803117 1223 COSMIC
COSN1946550 1516 COSMIC
COSN32063228 1668 COSMIC
COSN17408182 1910 COSMIC
COSN21955023 2053 COSMIC
COSN16476477 2058 COSMIC
COSN29021089 2075 COSMIC
COSN20098265 2579 COSMIC
COSN20098267 2580 COSMIC
COSN27724420 2589 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1455574687 3 dbSNP
rs982767648 7 dbSNP
rs951383881 10 dbSNP
rs777909627 11 dbSNP
rs369965860 13 dbSNP
rs769315649 13 dbSNP
rs919943551 14 dbSNP
rs1187110976 19 dbSNP
rs770139169 23 dbSNP
rs890439195 24 dbSNP
rs748651747 31 dbSNP
rs1235838886 35 dbSNP
rs1188423605 36 dbSNP
rs376753786 36 dbSNP
rs1318980713 40 dbSNP
rs1486226693 42 dbSNP
rs973957561 44 dbSNP
rs958881709 54 dbSNP
rs1436917619 60 dbSNP
rs193223960 63 dbSNP
rs1270257835 65 dbSNP
rs1377873493 83 dbSNP
rs1226504755 90 dbSNP
rs563907278 93 dbSNP
rs1251719811 102 dbSNP
rs996640917 105 dbSNP
rs981722406 109 dbSNP
rs1316059243 111 dbSNP
rs545753026 113 dbSNP
rs1039479349 116 dbSNP
rs1216842703 121 dbSNP
rs1236950059 131 dbSNP
rs1020023375 146 dbSNP
rs1415256660 149 dbSNP
rs1183697423 154 dbSNP
rs1419142049 159 dbSNP
rs1009841242 161 dbSNP
rs892773633 170 dbSNP
rs1157394460 171 dbSNP
rs1391360788 176 dbSNP
rs1402063601 177 dbSNP
rs1047417432 179 dbSNP
rs1032646322 190 dbSNP
rs1355930368 191 dbSNP
rs1445107489 191 dbSNP
rs878525 191 dbSNP
rs900120825 193 dbSNP
rs1286208305 196 dbSNP
rs190289471 199 dbSNP
rs1278127960 200 dbSNP
rs200527642 200 dbSNP
rs944232817 200 dbSNP
rs1212251339 210 dbSNP
rs958185014 218 dbSNP
rs1180709682 219 dbSNP
rs1031280472 227 dbSNP
rs891197964 238 dbSNP
rs115861303 241 dbSNP
rs573891696 244 dbSNP
rs1470693525 247 dbSNP
rs1172382481 251 dbSNP
rs774694609 252 dbSNP
rs769210642 256 dbSNP
rs1423957210 264 dbSNP
rs1412403143 274 dbSNP
rs368514833 281 dbSNP
rs954750561 287 dbSNP
rs185856781 296 dbSNP
rs1420406790 297 dbSNP
rs1166318139 299 dbSNP
rs1352284598 307 dbSNP
rs749798079 310 dbSNP
rs1255549938 311 dbSNP
rs919892174 311 dbSNP
rs1343134539 316 dbSNP
rs996284109 324 dbSNP
rs1281102440 326 dbSNP
rs537331932 349 dbSNP
rs937273657 358 dbSNP
rs570354846 359 dbSNP
rs3773778 362 dbSNP
rs1005378040 366 dbSNP
rs756238861 367 dbSNP
rs1476828031 369 dbSNP
rs1175174010 370 dbSNP
rs1395125837 384 dbSNP
rs1428490091 387 dbSNP
rs1456286264 392 dbSNP
rs888269821 401 dbSNP
rs1046999777 403 dbSNP
rs1391963634 407 dbSNP
rs971229939 408 dbSNP
rs929861398 410 dbSNP
rs1020085594 418 dbSNP
rs1443340452 422 dbSNP
rs988483640 423 dbSNP
rs73068767 426 dbSNP
rs1334032550 434 dbSNP
rs1276869067 439 dbSNP
rs1340669175 442 dbSNP
rs1281981415 458 dbSNP
rs1209826601 461 dbSNP
rs565944199 471 dbSNP
rs1335767352 477 dbSNP
rs916365537 479 dbSNP
rs1053519895 482 dbSNP
rs936846868 484 dbSNP
rs924080606 486 dbSNP
rs996278449 497 dbSNP
rs1389276242 504 dbSNP
rs1462415235 509 dbSNP
rs1397186708 512 dbSNP
rs531305612 515 dbSNP
rs1388531729 522 dbSNP
rs1461427001 524 dbSNP
rs547909602 526 dbSNP
rs1326348739 531 dbSNP
rs34512893 535 dbSNP
rs1160434251 540 dbSNP
rs1364641552 540 dbSNP
rs1433250732 550 dbSNP
rs1297793738 558 dbSNP
rs1470555067 561 dbSNP
rs1327149130 569 dbSNP
rs781512389 579 dbSNP
rs1363239325 583 dbSNP
rs1282897167 584 dbSNP
rs1018965866 585 dbSNP
rs1179954149 593 dbSNP
rs529450617 602 dbSNP
rs1464152244 607 dbSNP
rs116458700 608 dbSNP
rs1254701571 610 dbSNP
rs964675568 618 dbSNP
rs891271156 624 dbSNP
rs1476148389 633 dbSNP
rs1006245231 635 dbSNP
rs542231045 638 dbSNP
rs1468031541 646 dbSNP
rs573998226 650 dbSNP
rs1385982455 657 dbSNP
rs1395470836 658 dbSNP
rs1206764801 659 dbSNP
rs1332283343 662 dbSNP
rs1357915193 668 dbSNP
rs550026519 680 dbSNP
rs1350796259 683 dbSNP
rs1025863226 684 dbSNP
rs898622009 698 dbSNP
rs751425156 704 dbSNP
rs1327581379 708 dbSNP
rs937369329 711 dbSNP
rs1237565215 713 dbSNP
rs1372703715 717 dbSNP
rs1486602968 721 dbSNP
rs994099060 721 dbSNP
rs1188631327 723 dbSNP
rs1410910537 724 dbSNP
rs927216938 726 dbSNP
rs749265124 730 dbSNP
rs879236623 732 dbSNP
rs1440620223 734 dbSNP
rs1161046437 735 dbSNP
rs1364538219 738 dbSNP
rs879770327 740 dbSNP
rs3821700 745 dbSNP
rs1046302634 746 dbSNP
rs1320863752 752 dbSNP
rs1011947815 765 dbSNP
rs894793861 766 dbSNP
rs949976566 767 dbSNP
rs1349200070 777 dbSNP
rs1053551873 781 dbSNP
rs936376242 783 dbSNP
rs758203730 787 dbSNP
rs564375190 790 dbSNP
rs545790469 797 dbSNP
rs1384386313 799 dbSNP
rs924141058 805 dbSNP
rs1211012630 808 dbSNP
rs1250918985 812 dbSNP
rs913025919 812 dbSNP
rs1178727332 816 dbSNP
rs1251049576 820 dbSNP
rs933502163 845 dbSNP
rs148774752 850 dbSNP
rs957109777 862 dbSNP
rs1435367303 871 dbSNP
rs974954913 872 dbSNP
rs964706457 873 dbSNP
rs925722270 882 dbSNP
rs909195954 886 dbSNP
rs559940208 891 dbSNP
rs1385842176 899 dbSNP
rs541516743 903 dbSNP
rs1018625680 905 dbSNP
rs1234305293 906 dbSNP
rs1273373987 910 dbSNP
rs1305682917 914 dbSNP
rs752715866 922 dbSNP
rs1251646148 932 dbSNP
rs1488012851 935 dbSNP
rs1191541933 941 dbSNP
rs994439376 944 dbSNP
rs574228399 955 dbSNP
rs1008450841 957 dbSNP
rs955612422 959 dbSNP
rs1417532454 960 dbSNP
rs1430789245 968 dbSNP
rs1171775599 970 dbSNP
rs1024919978 973 dbSNP
rs1456666017 973 dbSNP
rs1447484384 976 dbSNP
rs1025816581 983 dbSNP
rs1012145564 984 dbSNP
rs1296204313 984 dbSNP
rs894826456 988 dbSNP
rs555520608 989 dbSNP
rs1296145994 994 dbSNP
rs1213814641 995 dbSNP
rs1000620601 999 dbSNP
rs902300940 1000 dbSNP
rs1042133104 1007 dbSNP
rs1208400845 1011 dbSNP
rs543581470 1014 dbSNP
rs1233032970 1023 dbSNP
rs143935653 1035 dbSNP
rs1187204461 1037 dbSNP
rs1413630900 1041 dbSNP
rs763269934 1043 dbSNP
rs1365954055 1047 dbSNP
rs1167538198 1059 dbSNP
rs1419096992 1062 dbSNP
rs142461240 1072 dbSNP
rs1001637430 1077 dbSNP
rs1319428442 1080 dbSNP
rs905822845 1085 dbSNP
rs1343095875 1087 dbSNP
rs1045740636 1090 dbSNP
rs1326334539 1093 dbSNP
rs1296497917 1094 dbSNP
rs1378341312 1095 dbSNP
rs1039280692 1096 dbSNP
rs949965108 1113 dbSNP
rs1335279504 1124 dbSNP
rs913192655 1127 dbSNP
rs1052866773 1128 dbSNP
rs1376087962 1129 dbSNP
rs1173274129 1131 dbSNP
rs1282359090 1143 dbSNP
rs1448966794 1156 dbSNP
rs1412946671 1162 dbSNP
rs909217374 1163 dbSNP
rs1237037331 1170 dbSNP
rs1484966039 1173 dbSNP
rs1190753914 1181 dbSNP
rs192903093 1188 dbSNP
rs1157204159 1191 dbSNP
rs1475736246 1197 dbSNP
rs925822594 1198 dbSNP
rs984793756 1207 dbSNP
rs1159177684 1210 dbSNP
rs1374370992 1211 dbSNP
rs1191327371 1215 dbSNP
rs1486372488 1216 dbSNP
rs916492368 1217 dbSNP
rs1209746776 1219 dbSNP
rs1396318333 1222 dbSNP
rs973314147 1223 dbSNP
rs1314602622 1224 dbSNP
rs1275611917 1228 dbSNP
rs1215509348 1237 dbSNP
rs1339068382 1238 dbSNP
rs1276871474 1241 dbSNP
rs1417111916 1242 dbSNP
rs1356032131 1243 dbSNP
rs10645914 1244 dbSNP
rs1277557859 1244 dbSNP
rs1277966687 1244 dbSNP
rs1345770741 1244 dbSNP
rs1353104193 1244 dbSNP
rs1408927241 1244 dbSNP
rs1456013548 1244 dbSNP
rs1480162726 1244 dbSNP
rs397707518 1244 dbSNP
rs775536440 1244 dbSNP
rs963391186 1245 dbSNP
rs1337355046 1251 dbSNP
rs1442705275 1252 dbSNP
rs1312322821 1253 dbSNP
rs539790252 1254 dbSNP
rs1274440104 1274 dbSNP
rs566054202 1282 dbSNP
rs974875214 1285 dbSNP
rs1236502131 1301 dbSNP
rs1281214445 1309 dbSNP
rs765221010 1312 dbSNP
rs554240337 1316 dbSNP
rs759139444 1337 dbSNP
rs1230966619 1344 dbSNP
rs1194636572 1346 dbSNP
rs1172357422 1348 dbSNP
rs1438711003 1362 dbSNP
rs1221323870 1364 dbSNP
rs1410323591 1364 dbSNP
rs929313632 1373 dbSNP
rs919364386 1381 dbSNP
rs964495390 1385 dbSNP
rs535929010 1393 dbSNP
rs911513605 1397 dbSNP
rs775973410 1407 dbSNP
rs28736479 1412 dbSNP
rs1475026923 1414 dbSNP
rs955604519 1416 dbSNP
rs766123372 1422 dbSNP
rs970984537 1428 dbSNP
rs1024784328 1433 dbSNP
rs1324977302 1439 dbSNP
rs1025924420 1448 dbSNP
rs760232274 1452 dbSNP
rs1032258414 1455 dbSNP
rs1000974541 1468 dbSNP
rs994323017 1473 dbSNP
rs11553468 1474 dbSNP
rs769038614 1476 dbSNP
rs1271736304 1482 dbSNP
rs1234261626 1490 dbSNP
rs997252959 1496 dbSNP
rs1215222763 1500 dbSNP
rs1253276916 1515 dbSNP
rs1445872363 1516 dbSNP
rs1001993288 1523 dbSNP
rs1437636219 1526 dbSNP
rs1190421324 1534 dbSNP
rs902034993 1536 dbSNP
rs550309868 1541 dbSNP
rs1039146646 1550 dbSNP
rs531496131 1551 dbSNP
rs1163932357 1564 dbSNP
rs1256518592 1566 dbSNP
rs1235722107 1569 dbSNP
rs1336083054 1574 dbSNP
rs62252145 1576 dbSNP
rs75587672 1578 dbSNP
rs1226681028 1588 dbSNP
rs888061660 1589 dbSNP
rs1320369958 1590 dbSNP
rs1327522659 1590 dbSNP
rs397876115 1590 dbSNP
rs1375534611 1592 dbSNP
rs1298971837 1593 dbSNP
rs1441682254 1595 dbSNP
rs1291793900 1596 dbSNP
rs1399308788 1597 dbSNP
rs1329004083 1598 dbSNP
rs1462992430 1600 dbSNP
rs1049287482 1602 dbSNP
rs866899455 1604 dbSNP
rs929319378 1611 dbSNP
rs1163538824 1613 dbSNP
rs1202850882 1620 dbSNP
rs1046145191 1631 dbSNP
rs1014234841 1633 dbSNP
rs137861773 1639 dbSNP
rs981944998 1646 dbSNP
rs1187188204 1647 dbSNP
rs1255357385 1665 dbSNP
rs1476036642 1666 dbSNP
rs1052939754 1674 dbSNP
rs4796 1675 dbSNP
rs1451978207 1695 dbSNP
rs1160356040 1697 dbSNP
rs80108312 1697 dbSNP
rs1414282226 1706 dbSNP
rs112999055 1709 dbSNP
rs746023170 1714 dbSNP
rs187532907 1723 dbSNP
rs1469356275 1726 dbSNP
rs1315951272 1727 dbSNP
rs943103533 1728 dbSNP
rs911684207 1737 dbSNP
rs987115012 1741 dbSNP
rs1273107519 1745 dbSNP
rs1353750061 1749 dbSNP
rs1209556637 1762 dbSNP
rs959185194 1770 dbSNP
rs1032290699 1774 dbSNP
rs1486613731 1793 dbSNP
rs1188381151 1801 dbSNP
rs928983322 1804 dbSNP
rs1249622858 1811 dbSNP
rs529663177 1820 dbSNP
rs1417529465 1823 dbSNP
rs1184297267 1848 dbSNP
rs1364624633 1848 dbSNP
rs1434125351 1850 dbSNP
rs918937186 1859 dbSNP
rs1171858000 1863 dbSNP
rs1377800094 1867 dbSNP
rs146195492 1869 dbSNP
rs1297942828 1875 dbSNP
rs963003921 1878 dbSNP
rs9837506 1882 dbSNP
rs1377201300 1883 dbSNP
rs1374927092 1887 dbSNP
rs770982172 1888 dbSNP
rs1020591883 1890 dbSNP
rs576575103 1893 dbSNP
rs1024374053 1898 dbSNP
rs1210785608 1899 dbSNP
rs182531172 1900 dbSNP
rs145885055 1903 dbSNP
rs1292889674 1904 dbSNP
rs1454054012 1906 dbSNP
rs191836975 1912 dbSNP
rs1007709119 1916 dbSNP
rs114148543 1918 dbSNP
rs1049795843 1919 dbSNP
rs778104258 1927 dbSNP
rs1463796733 1930 dbSNP
rs554524490 1931 dbSNP
rs186682113 1934 dbSNP
rs1299101627 1935 dbSNP
rs1439782385 1936 dbSNP
rs370791815 1936 dbSNP
rs540402602 1936 dbSNP
rs993734623 1938 dbSNP
rs1372589090 1947 dbSNP
rs891774390 1951 dbSNP
rs1294699299 1953 dbSNP
rs1454995360 1965 dbSNP
rs373028889 1966 dbSNP
rs1305700516 1968 dbSNP
rs1229335184 1972 dbSNP
rs1258531013 1973 dbSNP
rs535811226 1980 dbSNP
rs116614481 1987 dbSNP
rs1487120649 1988 dbSNP
rs1055876586 1991 dbSNP
rs115725305 1993 dbSNP
rs1186015123 1998 dbSNP
rs1039276320 2006 dbSNP
rs1417905553 2009 dbSNP
rs943238894 2019 dbSNP
rs1430872459 2022 dbSNP
rs141850263 2023 dbSNP
rs1417657935 2026 dbSNP
rs1460563961 2035 dbSNP
rs1351866015 2038 dbSNP
rs1396242428 2045 dbSNP
rs1436493253 2050 dbSNP
rs1287851924 2055 dbSNP
rs1359766884 2056 dbSNP
rs1051481249 2058 dbSNP
rs1383906474 2058 dbSNP
rs979772345 2069 dbSNP
rs929056968 2071 dbSNP
rs918884741 2073 dbSNP
rs1371500772 2077 dbSNP
rs1275217175 2080 dbSNP
rs1300294449 2084 dbSNP
rs1385055867 2085 dbSNP
rs535443216 2092 dbSNP
rs941607938 2100 dbSNP
rs910162266 2111 dbSNP
rs980666172 2119 dbSNP
rs965668197 2131 dbSNP
rs1017329597 2134 dbSNP
rs1474401693 2136 dbSNP
rs115233252 2137 dbSNP
rs1415504699 2141 dbSNP
rs759343079 2144 dbSNP
rs1024447611 2145 dbSNP
rs992834675 2148 dbSNP
rs773944916 2152 dbSNP
rs1298684750 2163 dbSNP
rs1046397107 2165 dbSNP
rs1354760292 2165 dbSNP
rs17029597 2165 dbSNP
rs1014293559 2166 dbSNP
rs894462301 2167 dbSNP
rs566402382 2174 dbSNP
rs1174373631 2178 dbSNP
rs1055907763 2179 dbSNP
rs1031624496 2180 dbSNP
rs1217463989 2180 dbSNP
rs1430869957 2182 dbSNP
rs936042958 2185 dbSNP
rs1190498547 2198 dbSNP
rs1263042112 2200 dbSNP
rs1193491925 2202 dbSNP
rs1176232265 2218 dbSNP
rs75196084 2219 dbSNP
rs77408272 2222 dbSNP
rs925117675 2223 dbSNP
rs1487361926 2233 dbSNP
rs1000239822 2239 dbSNP
rs1259656974 2244 dbSNP
rs904419548 2251 dbSNP
rs548095383 2252 dbSNP
rs1017549115 2257 dbSNP
rs376399639 2269 dbSNP
rs1432846216 2281 dbSNP
rs1255250165 2287 dbSNP
rs1007900751 2296 dbSNP
rs1359566760 2300 dbSNP
rs182488700 2300 dbSNP
rs945203754 2309 dbSNP
rs1277952512 2313 dbSNP
rs890268521 2315 dbSNP
rs976384827 2316 dbSNP
rs965700949 2319 dbSNP
rs1051597243 2322 dbSNP
rs562190925 2325 dbSNP
rs1279995272 2330 dbSNP
rs550639886 2331 dbSNP
rs1037354523 2335 dbSNP
rs532141399 2336 dbSNP
rs1441232754 2338 dbSNP
rs1178697339 2349 dbSNP
rs1394002300 2350 dbSNP
rs1399274629 2366 dbSNP
rs1452463197 2375 dbSNP
rs1337820425 2380 dbSNP
rs564679317 2391 dbSNP
rs746642635 2391 dbSNP
rs538049953 2393 dbSNP
rs1402713945 2395 dbSNP
rs926296523 2396 dbSNP
rs1447859041 2401 dbSNP
rs1325267337 2415 dbSNP
rs546884424 2415 dbSNP
rs1044629160 2419 dbSNP
rs546050023 2427 dbSNP
rs1213171360 2452 dbSNP
rs1339316017 2452 dbSNP
rs1275619999 2453 dbSNP
rs1458796102 2454 dbSNP
rs1198924863 2457 dbSNP
rs533387693 2457 dbSNP
rs1252023790 2460 dbSNP
rs1466711973 2461 dbSNP
rs572691852 2465 dbSNP
rs1401037567 2471 dbSNP
rs1475077393 2471 dbSNP
rs560723498 2474 dbSNP
rs1301527290 2493 dbSNP
rs956121065 2496 dbSNP
rs371459360 2497 dbSNP
rs1373937808 2499 dbSNP
rs1014491613 2504 dbSNP
rs924720975 2512 dbSNP
rs979156625 2523 dbSNP
rs1420173787 2535 dbSNP
rs968717546 2536 dbSNP
rs1018039393 2541 dbSNP
rs748489373 2548 dbSNP
rs1000286400 2551 dbSNP
rs1188728953 2562 dbSNP
rs753446660 2567 dbSNP
rs1233080449 2574 dbSNP
rs1254338162 2578 dbSNP
rs1197711379 2582 dbSNP
rs1332223632 2582 dbSNP
rs1042178748 2585 dbSNP
rs71068056 2589 dbSNP
rs77488490 2589 dbSNP
rs1030170698 2590 dbSNP
rs1190888468 2590 dbSNP
rs1446324509 2590 dbSNP
rs375530388 2590 dbSNP
rs386396304 2590 dbSNP
rs397751236 2590 dbSNP
rs1341694309 2591 dbSNP
rs144976427 2591 dbSNP
rs892269382 2591 dbSNP
rs1040280032 2592 dbSNP
rs1217983004 2594 dbSNP
rs1315966390 2596 dbSNP
rs1294660185 2597 dbSNP
rs1202873379 2598 dbSNP
rs1244881615 2598 dbSNP
rs1488616450 2599 dbSNP
rs755535235 2599 dbSNP
rs944590559 2599 dbSNP
rs542546075 2611 dbSNP
rs993357019 2612 dbSNP
rs1186946729 2617 dbSNP
rs1255196056 2622 dbSNP
rs1339306619 2623 dbSNP
rs910220407 2639 dbSNP
rs1310157192 2645 dbSNP
rs985798772 2646 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 54918.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' auuagguacgugugUCCUCCa 5'
                        |||||| 
Target 5' gagauuuuggugggAGGAGGa 3'
3 - 23
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000205636.3 | 3UTR | UGGAGAUUUUGGUGGGAGGAGGAGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
348 hsa-miR-660-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059151 TXNIP thioredoxin interacting protein 2 2
MIRT294324 ZNF264 zinc finger protein 264 2 2
MIRT306043 SKIL SKI like proto-oncogene 2 4
MIRT392841 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT444084 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT458774 CES2 carboxylesterase 2 2 2
MIRT460273 SLC26A2 solute carrier family 26 member 2 2 2
MIRT462675 HMOX1 heme oxygenase 1 2 4
MIRT473711 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT478539 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT483234 FAM13C family with sequence similarity 13 member C 2 4
MIRT486255 BCORL1 BCL6 corepressor like 1 2 2
MIRT501951 MAT2A methionine adenosyltransferase 2A 2 10
MIRT513043 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513249 FBXO17 F-box protein 17 2 2
MIRT526940 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528176 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT531525 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532746 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534241 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538198 DBN1 drebrin 1 2 2
MIRT539305 AMOTL1 angiomotin like 1 2 2
MIRT539567 CNKSR3 CNKSR family member 3 2 4
MIRT540043 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540232 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540251 RGS17 regulator of G protein signaling 17 2 2
MIRT540878 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT543484 RXRA retinoid X receptor alpha 2 2
MIRT551435 F2 coagulation factor II, thrombin 2 2
MIRT553925 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT556312 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556943 ING1 inhibitor of growth family member 1 2 2
MIRT569883 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 2 2
MIRT571849 NRBF2 nuclear receptor binding factor 2 2 2
MIRT572420 VWA5A von Willebrand factor A domain containing 5A 2 2
MIRT572495 BTN2A2 butyrophilin subfamily 2 member A2 2 2
MIRT572564 AFF1 AF4/FMR2 family member 1 2 2
MIRT572883 CHST15 carbohydrate sulfotransferase 15 2 2
MIRT574988 Slc38a5 solute carrier family 38, member 5 2 4
MIRT575264 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT608476 RRP36 ribosomal RNA processing 36 2 4
MIRT608529 TMOD3 tropomodulin 3 2 2
MIRT608578 RNF149 ring finger protein 149 2 2
MIRT608615 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608679 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608727 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT609575 CATSPER4 cation channel sperm associated 4 2 2
MIRT609710 TMEM132C transmembrane protein 132C 2 2
MIRT609858 DAZAP2 DAZ associated protein 2 2 2
MIRT610262 LRRC47 leucine rich repeat containing 47 2 2
MIRT610349 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610729 PEA15 phosphoprotein enriched in astrocytes 15 2 4
MIRT610803 KLK2 kallikrein related peptidase 2 2 2
MIRT610968 MAFK MAF bZIP transcription factor K 2 2
MIRT611117 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 2
MIRT611600 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612211 TMEM109 transmembrane protein 109 2 2
MIRT612248 MICALL1 MICAL like 1 2 2
MIRT613252 CAV1 caveolin 1 2 4
MIRT613323 ARID3A AT-rich interaction domain 3A 2 4
MIRT613514 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT613605 TP53 tumor protein p53 2 2
MIRT613632 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT613809 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614835 PRKCA protein kinase C alpha 2 2
MIRT614985 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615320 MLXIPL MLX interacting protein like 2 2
MIRT615504 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615529 SPANXN5 SPANX family member N5 2 2
MIRT615610 SPANXN1 SPANX family member N1 2 2
MIRT615755 C6 complement C6 2 2
MIRT615952 SORD sorbitol dehydrogenase 2 2
MIRT616284 HMGB1 high mobility group box 1 2 2
MIRT616626 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT616882 DGCR14 ess-2 splicing factor homolog 2 2
MIRT616994 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617080 SPIB Spi-B transcription factor 2 2
MIRT617345 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617712 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT618102 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618493 DENND5B DENN domain containing 5B 2 4
MIRT618756 SLC38A5 solute carrier family 38 member 5 2 5
MIRT619928 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620028 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620087 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620209 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620557 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620770 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620784 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620895 ANO7 anoctamin 7 2 2
MIRT621284 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT622594 PRRG4 proline rich and Gla domain 4 2 2
MIRT623273 MED28 mediator complex subunit 28 2 2
MIRT624247 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT624298 COMMD2 COMM domain containing 2 2 2
MIRT624526 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624567 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT624692 AR androgen receptor 2 2
MIRT624767 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT624829 ACO1 aconitase 1 2 2
MIRT625159 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625261 ZNF566 zinc finger protein 566 2 2
MIRT625388 ZNF716 zinc finger protein 716 2 2
MIRT625827 FBXO42 F-box protein 42 2 2
MIRT625837 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626021 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626052 PDE4C phosphodiesterase 4C 2 2
MIRT626354 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626778 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627050 HOXA13 homeobox A13 2 2
MIRT627274 XIAP X-linked inhibitor of apoptosis 2 2
MIRT627310 WDR31 WD repeat domain 31 2 2
MIRT627916 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT630557 CCDC107 coiled-coil domain containing 107 2 2
MIRT630775 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT632083 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633138 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633711 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT634361 RNF157 ring finger protein 157 2 2
MIRT635739 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636963 APTX aprataxin 2 2
MIRT637373 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT637815 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637911 FAM153B family with sequence similarity 153 member B 2 2
MIRT638474 PANK3 pantothenate kinase 3 2 2
MIRT638633 GSR glutathione-disulfide reductase 2 4
MIRT639493 TSPAN1 tetraspanin 1 2 2
MIRT639773 GPR45 G protein-coupled receptor 45 2 2
MIRT639781 RAX retina and anterior neural fold homeobox 2 2
MIRT639915 SLIT1 slit guidance ligand 1 2 2
MIRT640055 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640108 DUOX2 dual oxidase 2 2 2
MIRT640402 ZNF785 zinc finger protein 785 2 2
MIRT640555 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640751 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640765 GLO1 glyoxalase I 2 2
MIRT640915 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641521 CREBBP CREB binding protein 2 2
MIRT641533 SNW1 SNW domain containing 1 2 2
MIRT641692 SPCS1 signal peptidase complex subunit 1 2 2
MIRT641745 MACROD2 MACRO domain containing 2 2 2
MIRT641866 STOML1 stomatin like 1 2 2
MIRT641951 RNF115 ring finger protein 115 2 2
MIRT642205 SMAGP small cell adhesion glycoprotein 2 2
MIRT642420 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643028 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643406 PAX1 paired box 1 2 2
MIRT643500 ZNF195 zinc finger protein 195 2 2
MIRT643754 LEFTY2 left-right determination factor 2 2 2
MIRT643898 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644036 CENPM centromere protein M 2 2
MIRT644200 LAT2 linker for activation of T-cells family member 2 2 2
MIRT644228 ADD1 adducin 1 2 2
MIRT644690 GPR55 G protein-coupled receptor 55 2 2
MIRT645128 HES2 hes family bHLH transcription factor 2 2 2
MIRT645347 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT645897 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 2 2
MIRT645905 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT646049 NPR1 natriuretic peptide receptor 1 2 2
MIRT646137 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646219 DUSP10 dual specificity phosphatase 10 2 2
MIRT646385 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646739 FADS1 fatty acid desaturase 1 2 2
MIRT646877 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647109 GNL3L G protein nucleolar 3 like 2 2
MIRT647523 PPIE peptidylprolyl isomerase E 2 2
MIRT647553 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647755 NBPF3 NBPF member 3 2 2
MIRT648075 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648225 TM4SF20 transmembrane 4 L six family member 20 2 2
MIRT648441 MYOZ3 myozenin 3 2 2
MIRT648823 ZNF689 zinc finger protein 689 2 2
MIRT649229 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT649237 FEM1A fem-1 homolog A 2 2
MIRT649249 TRIM65 tripartite motif containing 65 2 2
MIRT649459 WDR70 WD repeat domain 70 2 2
MIRT649637 RASA4 RAS p21 protein activator 4 2 2
MIRT650745 FKTN fukutin 2 2
MIRT651041 ZNF652 zinc finger protein 652 2 2
MIRT651754 VEGFA vascular endothelial growth factor A 2 2
MIRT651799 UST uronyl 2-sulfotransferase 2 2
MIRT652562 TLX1 T-cell leukemia homeobox 1 2 2
MIRT652776 TENM3 teneurin transmembrane protein 3 2 2
MIRT652939 SYNGR1 synaptogyrin 1 2 2
MIRT653006 STXBP5L syntaxin binding protein 5 like 2 2
MIRT653030 STX1B syntaxin 1B 2 2
MIRT653279 SNAP29 synaptosome associated protein 29 2 2
MIRT654057 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654329 RBM33 RNA binding motif protein 33 2 2
MIRT654650 PTAFR platelet activating factor receptor 2 2
MIRT656577 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656595 LSAMP limbic system-associated membrane protein 2 2
MIRT656646 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT656739 LMBR1L limb development membrane protein 1 like 2 2
MIRT656903 KIAA1958 KIAA1958 2 2
MIRT657392 HM13 histocompatibility minor 13 2 2
MIRT657528 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT657611 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657668 GPR26 G protein-coupled receptor 26 2 2
MIRT657689 GPR155 G protein-coupled receptor 155 2 2
MIRT657818 GJD3 gap junction protein delta 3 2 2
MIRT658410 FAM208A family with sequence similarity 208 member A 2 2
MIRT658955 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT659425 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT659499 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659994 C2CD2L C2CD2 like 2 2
MIRT660215 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660493 ARRDC3 arrestin domain containing 3 2 2
MIRT660761 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660827 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT661576 EPHX2 epoxide hydrolase 2 2 2
MIRT661711 MTO1 mitochondrial tRNA translation optimization 1 2 4
MIRT661826 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662123 APOL6 apolipoprotein L6 2 2
MIRT662254 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662314 ADM2 adrenomedullin 2 2 2
MIRT662341 MYLK3 myosin light chain kinase 3 2 2
MIRT662453 SEMA5A semaphorin 5A 2 2
MIRT662746 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662901 GJB1 gap junction protein beta 1 2 2
MIRT663018 KIAA1586 KIAA1586 2 2
MIRT663102 THEM4 thioesterase superfamily member 4 2 2
MIRT663574 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT664125 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664560 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT665589 TUBD1 tubulin delta 1 2 2
MIRT666464 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666527 RNF170 ring finger protein 170 2 2
MIRT666874 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667055 PARVA parvin alpha 2 2
MIRT667282 NAV1 neuron navigator 1 2 2
MIRT667928 IGLON5 IgLON family member 5 2 2
MIRT667957 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668336 FKBP5 FK506 binding protein 5 2 2
MIRT668718 DIP2C disco interacting protein 2 homolog C 2 2
MIRT669310 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669688 ABLIM1 actin binding LIM protein 1 2 2
MIRT671524 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT672112 TLCD2 TLC domain containing 2 2 4
MIRT672186 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT672702 ZNF677 zinc finger protein 677 2 2
MIRT673473 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT673617 HPSE heparanase 2 2
MIRT673763 ZNF333 zinc finger protein 333 2 2
MIRT674817 FAM229B family with sequence similarity 229 member B 2 2
MIRT675304 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675404 SVOP SV2 related protein 2 2
MIRT676163 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676320 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT676347 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676526 RNF216 ring finger protein 216 2 2
MIRT676571 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676588 RDH13 retinol dehydrogenase 13 2 2
MIRT676648 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676723 METTL14 methyltransferase like 14 2 2
MIRT676805 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676813 SHROOM4 shroom family member 4 2 2
MIRT677204 MURC caveolae associated protein 4 2 2
MIRT677284 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677359 POC1A POC1 centriolar protein A 2 2
MIRT677516 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677530 OCIAD2 OCIA domain containing 2 2 2
MIRT677627 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677669 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT678056 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT678132 METTL21A methyltransferase like 21A 2 2
MIRT678154 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678463 GLYAT glycine-N-acyltransferase 2 2
MIRT678614 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678716 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679161 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679307 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679430 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT679499 ZNF106 zinc finger protein 106 2 2
MIRT679963 VTA1 vesicle trafficking 1 2 2
MIRT679983 E2F2 E2F transcription factor 2 2 2
MIRT680153 TOP3A DNA topoisomerase III alpha 2 2
MIRT680304 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT680330 LRRC58 leucine rich repeat containing 58 2 2
MIRT680401 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683911 PSMB9 proteasome subunit beta 9 2 2
MIRT684183 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684238 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684284 CDK9 cyclin dependent kinase 9 2 2
MIRT685411 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686260 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT688250 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688327 FAM151B family with sequence similarity 151 member B 2 2
MIRT688747 CNDP1 carnosine dipeptidase 1 2 2
MIRT689040 ANGPTL3 angiopoietin like 3 2 2
MIRT692525 PARD3 par-3 family cell polarity regulator 2 2
MIRT692984 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT699866 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT699877 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT700840 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701538 NCKAP1 NCK associated protein 1 2 2
MIRT703683 FAM189B family with sequence similarity 189 member B 2 2
MIRT708555 SPA17 sperm autoantigenic protein 17 2 2
MIRT708579 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708721 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT708984 CABP4 calcium binding protein 4 2 2
MIRT709195 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709679 PCDH17 protocadherin 17 2 2
MIRT709962 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710173 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710329 STK40 serine/threonine kinase 40 2 2
MIRT710532 TMEM201 transmembrane protein 201 2 2
MIRT710628 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT711037 RNF187 ring finger protein 187 2 2
MIRT711227 RETSAT retinol saturase 2 2
MIRT711418 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711469 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT711636 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711658 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711704 GMPR guanosine monophosphate reductase 2 2
MIRT711924 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712061 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712094 TMEM218 transmembrane protein 218 2 2
MIRT712541 CYB561D1 cytochrome b561 family member D1 2 2
MIRT714480 TBL2 transducin beta like 2 2 2
MIRT716323 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT716750 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT717014 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT717162 SHB SH2 domain containing adaptor protein B 2 2
MIRT717369 EDN2 endothelin 2 2 2
MIRT717481 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT718080 CLIC5 chloride intracellular channel 5 2 2
MIRT718545 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT718835 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT718864 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719149 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719687 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT719780 ZNF236 zinc finger protein 236 2 2
MIRT719859 KLF2 Kruppel like factor 2 2 2
MIRT720496 TMEM178B transmembrane protein 178B 2 2
MIRT720804 NUDT5 nudix hydrolase 5 2 2
MIRT720944 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721344 LIF LIF, interleukin 6 family cytokine 2 2
MIRT721805 GRM1 glutamate metabotropic receptor 1 2 2
MIRT721924 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722429 HRNR hornerin 2 2
MIRT723971 GPR146 G protein-coupled receptor 146 2 2
MIRT724225 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 2 2
MIRT724272 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 2 2
MIRT724659 PXDN peroxidasin 2 2
MIRT725282 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725434 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725604 CAPN6 calpain 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-660 4-hydroxynonenal NULL 5283344 Microarray human leukemic HL-60 cell 19022373 2009 up-regulated
miR-660 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-660 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-660 Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-660 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-mir-660 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-660 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-660 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-660 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-660 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-660 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-660-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-660-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-660-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-660-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-660-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-660-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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