pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF699   
Synonyms hang
Description zinc finger protein 699
Transcript NM_198535   
Expression
Putative miRNA Targets on ZNF699
3'UTR of ZNF699
(miRNA target sites are highlighted)
>ZNF699|NM_198535|3'UTR
   1 ATGTAAGGAATATGGGAATGTCTGCAAAGCTTCAGATCCTAGGCAACATGTGAGATCTCATACTGTGGAGACACCCTATG
  81 AATGTAAGAAAGTAGGAAATTGTTGCTCATCGTTTTGAAGATTTGAGGACACTTTAGAGAAACCCTGTGTATGTAAGTCA
 161 TGTGCTAAAGCCTTTATGAACATTGCTTATTATGTATAAGAAAATCTCTACTAGAAATGAAGATCAGTGCCTCATCCTTA
 241 AAGTAGAATGCTGGCTCGTTGATTACCAGTGTTTTCTGATAGGAACATTGAAGGTGATAAATTTACCTTTTCAGCTCTAG
 321 CCACATACTTTTTAGTATGAGGTGCTTTAATTTTGGTTCTGATGTAAATATGATTTCCATTACAAAATCTTTTGGATCAT
 401 GGAGGACACGAAATATTTTTTCTGTATAGGCAGCAGTGGTCTTTTTTAAAAAAGTGGTTTCTAATTAATGTTCATTGTTC
 481 TTTAAATGGGTAGTCGTTATAATATTGACAAACCAATATAATATTGACAAACCAAAAACCAAATATTGATTTTTGTTGAT
 561 GTTTTGTTTTTAGTCTACATGGCAGATAATGGAACTTGCCCACTCAATATTTTTCTTCCTATTCTTTTTTGCTAAGAGAC
 641 GTTAGAGTTTCTGAGATGATAAATTTTTACTATTAAAAGCTTTTATTGTCTAGTGAGTAATTTCAGCAGAAATTAATTTA
 721 ATATACTATTTTTATATTTTATTCTTTGTCCTTGCTCGTGGCTGGGAATTGGATCCAGTGTTTTGAGTGTAAAAATTGTG
 801 TTACATTAACTACATTTCCCAGAATCACTTTTTTCTCCAGTTCTAGGTTAGACTTGTCTAAAATAAGAGTTTGTACGAGA
 881 TTTGGAAGGCATAAGGGAAGAAAAAGCTGTTATGCTATGTTTAGTGGGGCCATCAGACAGAGAGACAGATGTATAAAGGC
 961 CTGGTGACCTCTAGTTTTCAGCTCATTTTTCTGACTGTTGGACTCATTGATCAATATTTGCTCAAAACTGAATGTTATAG
1041 CTGGACGTGATGGTGCATACCTGTGGTCCCAGCTACTCAGGGAGCTGAGGCTGGAGGATCACTTGAGCCCAGGAGTTTGA
1121 GGCTGCAGTGAACTATGATCATGCCACTGCACTCCAGCCTGAGTGATAGAGTGAGACCCTTTCTCAAAAACAAAACAAAA
1201 CGAAATAAAAAACCAAACATTAAATGCTTGCTTGACCTCAGTGTCTTCCAAGGCAGCATCTCTAAAGCTATCACCAGATA
1281 CAGCTTCTTGGATTTTCTAGCAAGCTCTGGCATTGCCATTTTGCTTATGTTGCAGTCTTTCTTACACAGTCCAATCGCAT
1361 CATGTCATGCTATTCATGGGGAAAAATACGTTCGCAAGTCTCAAAAGCAAGAGCTGTGGAGAGTGAGGGAAGTTACCCTT
1441 GGTAATTGAGGTAAGCATCCACAGGGTATCATCCTGTTTTAATGGAGGAAGATTTATACTTGACACCTTTAAACAGGAAA
1521 GATTTTACTGCTTTTTTTTTTTTTTTAAATGTAAGAAGATGAATTGCTTCAGGTACCTTTAGCTACAGTATTATATTTTC
1601 CCTTTAAAAGTATAATCTACTACTGTGATATTTCCCTCCTATTATATTTTCTCTTTAAAAGTATAACTCTACTATTTCCC
1681 CATAATCACTTTTTATTTTATTATACATATACTAACATGCATGAAGTGTGCTAATCTTCAATGTACAGCTTAATGACATT
1761 TCATGTATGTACATGTCCTGGTAAACAGAACATTTCCAAGACTTTAGGAAGTTCCTTCATCCTCTTTCTCAGTGATAATT
1841 ACTCCACAGGGCAACCACAATTTTGACTCTTACTATAATTGACTTGGTGTGCTTGTTCTTGATTTTCATCCAAATGTTAA
1921 AATACAATATATACAGTTATGTGTTTTGACTTCTTTTGCTCAACATAATGTGTGGTTTGACTTTTAATTGTTCTTTTGAT
2001 AGATGTATGGGCTTATTTATCTTGGTATGTGCTATATGCTCAGGAATGAATTTACTGAATCATAGGGTAGACTTTAAATT
2081 TAGTTTTGGTAGGTATTGCAGTTTTCAAAAAATATCGATTCCACGAATAATCCCCAAAACAATGCATGAAAGTTCCAGTT
2161 GTTTCACACACCTGTCCAGCTCTTTCTGATTATAGTCATCCAGCAGACAGTGTGCATTTACCTGATGTGTAATGATTTCG
2241 AGTACTTTTCGATGTGCTTATTGGCTATTTGGATTTTTTTTTTTTTTGAGGGCACCTGTTGAAACATTTCATCCATTTAT
2321 GATTTCTTTTCTTTTTTTTTTTTTTTGAGACGGACTCTTGTGCCCAGGTTGGAGTGCAGTGGCGTGATCTTGCTCACTGC
2401 AATCTCCGCTTCCTGGGTTCAAGTGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCACAC
2481 CTGGCTAATTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGTTGGTCTTGAACTCCTGACCTCAGGT
2561 GATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCACCCAGACTTATGGTTCCTTTTTAAA
2641 AAAAAAAAAAAATTGAAAGGTTTCCTTCTGGTTACTTGTCCTTTATTGTATGTATGTATATCTATATCTAGGTACACATG
2721 CATAGATATGTATAAACCATGTATCATATATTACATATATACATAAAATATGTATATTATATATACATACATTACAGATA
2801 ACATTTCCCAATCTCTGTCTTGTCTTTTCACTCTTTAAAGGGAATTTGTTGGTTTAAATAATTTATTACTAAAAAGTCCT
2881 TGGGTATAACGAGCTTCAGACATGGCTAAATCCTGGGGCTAAAAAAATGTTATCTAGTTGAATTCTGTCTCCCTGTCTTG
2961 GCTGTGCATCCTCCTGCATTAGTGTTTCTTCCAAGCAGGTTGTCTCTTCATAGATGGCCCCAGAAACTCTGGCTACTTTC
3041 TTCCCAACTTAAAGTCTCAGGGAGAAAAGAGTGATTGTCTTTTTGAGTGGTTCCAATATGATGATCAGAATTGAATCTCG
3121 TTGGCTCTGATTGGCTCACTTGCCCACTGTACTCTAGTCACTGGCCTGGGGAATGTAATACTCTCATTTGTTTAGGGTTA
3201 GTGCCTGTTCTTATCCAGAAACTGGATTAGAGTCTGCACTGACTGAATCATAGAGTCCTGGCAGTTTTGGGGCATATGCA
3281 GAGGGGAGGAGGAAGGAGTGGGCAGGTAGGATCTAAAAGCAGTGGTAATGTTAGCTGTTATGCTGGTCTTAGCAGCAAGT
3361 GGGAACTGTGAAGTCTGGGAACTCAGCCAGGGTTAGGTAGTTCCTAGATAGCATTTTAGAAAGGTCAGGTGTCATCCATT
3441 AACATGTGTTTAGATTGCTAAAGATTGCTGCTTGGCCAGGCACAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGC
3521 CGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTGTACTAAAAAAA
3601 TTAGCCAGGCGTGGTGGCCTGTGCCTATAATCTCAGCTACTCAGGAGGCTGGGGCAGGAGAATCACTTGAACCCAGGAGG
3681 TGGAGTTGCAGGTAGCCAAGATTGTGCCAGTGCACTCCAGCCTGGGCAACAGAATGAGACTCCGTGTCAAAAAAAAAAAA
3761 AAAAAAAGATTGCTGCTTAATCTTTAATGAGCATAAAGATCAACTTGAGATCTGACACCTGTTTAAGAATTATTTGCCTG
3841 GACCAAGATAATGAATCTACTCTCCTATGTTTCCTTCTAGATTCTTTATTGTTTTTTTATGTAGGTCTGTGATCTACTTT
3921 GAATAATTTTTTGTAGCGTGTGAGGTAGGATCAAGGTGTGTGTATATAGATTTATCAAAGAGACCATGGTTTCCTCTTTG
4001 CTGAGGTGATCTCTGCCTCTTGGTTCATTTGTCTTTTCTTGCATCAATACCATACTATCTTAATTTATGTTGCTTTGTAA
4081 TATTTTTGGAAATCTGGTAGTGAAAGCCTTCCAACTTTTTTATTCTTTAAGATTGTCTTGCCTTCTCTGTTCCCCATGTT
4161 TCCTAAATTAATTTTGGAATCTCAGGATTAATTTTCACAAATGAATTTTTGGTACTATGCCTGTAATTGCATTGGTTTTA
4241 TAAAATAACCTGAGGATAATTGACATCTTTACAATATCGAGTTTTCCAGTTGATGAATATGGTATAATTGTCCATTTACC
4321 TAGGTTGTCTTTAAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaACCCAAAAUUCUCAAGAAAu 5'
            ||  ||||||  ||||||| 
Target 5' ttTGACTTTTAATTGTTCTTTt 3'
1976 - 1997 168.00 -8.90
2
miRNA  3' uaacccAAAAUUCUCAAGAAAu 5'
                | || |  ||||||| 
Target 5' aattaaTGTTCATTGTTCTTTa 3'
463 - 484 148.00 -5.90
3
miRNA  3' uaACCCAAAAUUCUCAAGAAAu 5'
            || |||||  || |||||| 
Target 5' taTGTGTTTT--GACTTCTTTt 3'
1938 - 1957 140.00 -6.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30491764 38 COSMIC
COSN31581203 44 COSMIC
COSN31494336 60 COSMIC
COSN30126685 77 COSMIC
COSN30144784 85 COSMIC
COSN27006414 88 COSMIC
COSN27006415 103 COSMIC
COSN31564944 111 COSMIC
COSN30185376 120 COSMIC
COSN30519846 133 COSMIC
COSN6418046 206 COSMIC
COSN8754563 435 COSMIC
COSN154781 499 COSMIC
COSN9853407 865 COSMIC
COSN15176839 943 COSMIC
COSN1773566 1059 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769092780 2 dbSNP
rs1156812621 3 dbSNP
rs747099402 5 dbSNP
rs374704513 12 dbSNP
rs1250635977 14 dbSNP
rs1180838293 15 dbSNP
rs780063177 19 dbSNP
rs1449019946 26 dbSNP
rs1238890420 29 dbSNP
rs772282533 39 dbSNP
rs762998592 40 dbSNP
rs572274439 42 dbSNP
rs774856941 58 dbSNP
rs560349583 61 dbSNP
rs1430989402 62 dbSNP
rs1023944701 63 dbSNP
rs1014530602 72 dbSNP
rs185917613 75 dbSNP
rs1294481546 79 dbSNP
rs1364011555 88 dbSNP
rs1378310779 96 dbSNP
rs1299203593 102 dbSNP
rs899727475 108 dbSNP
rs181318553 110 dbSNP
rs772937362 111 dbSNP
rs890953202 112 dbSNP
rs1052216148 126 dbSNP
rs1047588228 136 dbSNP
rs555966103 144 dbSNP
rs1186870597 154 dbSNP
rs1250103486 162 dbSNP
rs903542401 165 dbSNP
rs10419172 176 dbSNP
rs1043352597 177 dbSNP
rs765269562 182 dbSNP
rs745465646 183 dbSNP
rs948312160 184 dbSNP
rs79031595 196 dbSNP
rs1344131073 200 dbSNP
rs1455344861 204 dbSNP
rs944644320 208 dbSNP
rs554862710 211 dbSNP
rs992813296 229 dbSNP
rs772383142 239 dbSNP
rs1281856174 243 dbSNP
rs1381268902 243 dbSNP
rs10419140 247 dbSNP
rs562850482 257 dbSNP
rs935823666 258 dbSNP
rs908015008 264 dbSNP
rs879166356 288 dbSNP
rs1326869359 292 dbSNP
rs952080498 302 dbSNP
rs1210338837 304 dbSNP
rs750970141 306 dbSNP
rs1027674860 315 dbSNP
rs1465506981 327 dbSNP
rs57390564 330 dbSNP
rs1235746184 337 dbSNP
rs1474070090 339 dbSNP
rs1182908160 356 dbSNP
rs1411833366 388 dbSNP
rs963963792 398 dbSNP
rs1311397360 400 dbSNP
rs977178786 402 dbSNP
rs1388927657 407 dbSNP
rs1018232129 409 dbSNP
rs748426445 410 dbSNP
rs1360353615 427 dbSNP
rs890990932 446 dbSNP
rs528247995 448 dbSNP
rs916940274 448 dbSNP
rs59274077 461 dbSNP
rs797001901 461 dbSNP
rs1031223898 466 dbSNP
rs1194721632 469 dbSNP
rs959015606 474 dbSNP
rs763533525 485 dbSNP
rs760261363 489 dbSNP
rs775127695 490 dbSNP
rs1441615734 495 dbSNP
rs766725850 496 dbSNP
rs1210876875 498 dbSNP
rs1251801079 499 dbSNP
rs1202074280 500 dbSNP
rs1035007198 517 dbSNP
rs547622418 524 dbSNP
rs1426809124 536 dbSNP
rs972218057 536 dbSNP
rs1043383524 546 dbSNP
rs779382129 548 dbSNP
rs947759683 556 dbSNP
rs901241494 559 dbSNP
rs894810900 561 dbSNP
rs1330254181 566 dbSNP
rs1230750912 586 dbSNP
rs755424534 609 dbSNP
rs149100230 610 dbSNP
rs1235201316 614 dbSNP
rs1273939419 626 dbSNP
rs1006830533 636 dbSNP
rs1207870657 638 dbSNP
rs908046593 640 dbSNP
rs984002431 641 dbSNP
rs1197187729 647 dbSNP
rs1408694928 648 dbSNP
rs1478111435 648 dbSNP
rs930717794 649 dbSNP
rs1387728686 657 dbSNP
rs1050767429 673 dbSNP
rs1169185935 688 dbSNP
rs78802748 688 dbSNP
rs1325272352 694 dbSNP
rs1467390080 705 dbSNP
rs1441858127 706 dbSNP
rs1297004630 707 dbSNP
rs1340184489 709 dbSNP
rs1416029530 723 dbSNP
rs1230675237 730 dbSNP
rs760136040 738 dbSNP
rs1356258626 741 dbSNP
rs1181488643 744 dbSNP
rs1292393914 744 dbSNP
rs529113314 750 dbSNP
rs904369128 757 dbSNP
rs569694199 758 dbSNP
rs964732314 762 dbSNP
rs549991080 764 dbSNP
rs986748737 786 dbSNP
rs955446645 787 dbSNP
rs1030839221 789 dbSNP
rs1188626588 790 dbSNP
rs1367886985 791 dbSNP
rs999282881 795 dbSNP
rs35194542 796 dbSNP
rs560259668 798 dbSNP
rs1391135076 804 dbSNP
rs1456481574 812 dbSNP
rs1320204741 818 dbSNP
rs780219187 828 dbSNP
rs1456352754 829 dbSNP
rs1437456439 835 dbSNP
rs1237035235 841 dbSNP
rs1198664007 845 dbSNP
rs1340408753 847 dbSNP
rs967848775 849 dbSNP
rs189813645 856 dbSNP
rs767169208 870 dbSNP
rs1335962787 874 dbSNP
rs73504735 876 dbSNP
rs926940782 877 dbSNP
rs894837624 884 dbSNP
rs984786596 891 dbSNP
rs952963340 892 dbSNP
rs1422019467 900 dbSNP
rs1056502795 901 dbSNP
rs1418458675 924 dbSNP
rs555988478 929 dbSNP
rs1376729792 930 dbSNP
rs886650985 933 dbSNP
rs1332612539 942 dbSNP
rs184541028 969 dbSNP
rs972856412 973 dbSNP
rs930831044 979 dbSNP
rs192646891 984 dbSNP
rs1019647179 993 dbSNP
rs1006930474 1000 dbSNP
rs920743741 1005 dbSNP
rs1286774094 1007 dbSNP
rs138091677 1014 dbSNP
rs889784937 1016 dbSNP
rs757593058 1017 dbSNP
rs1032317379 1023 dbSNP
rs1482018281 1028 dbSNP
rs1000541152 1029 dbSNP
rs759243324 1037 dbSNP
rs1258223956 1038 dbSNP
rs904424143 1040 dbSNP
rs751292451 1044 dbSNP
rs764008495 1046 dbSNP
rs1414298377 1047 dbSNP
rs1164710650 1053 dbSNP
rs577750246 1066 dbSNP
rs1437762595 1069 dbSNP
rs1160155518 1072 dbSNP
rs1377259328 1074 dbSNP
rs1237555340 1076 dbSNP
rs1041604372 1080 dbSNP
rs1304652793 1082 dbSNP
rs10412061 1083 dbSNP
rs895607162 1085 dbSNP
rs1306599009 1086 dbSNP
rs987840690 1091 dbSNP
rs1352759815 1096 dbSNP
rs1224665672 1099 dbSNP
rs775508959 1105 dbSNP
rs955327955 1106 dbSNP
rs1310072058 1108 dbSNP
rs923889499 1117 dbSNP
rs1292479240 1135 dbSNP
rs1238496979 1136 dbSNP
rs937073176 1147 dbSNP
rs1310678241 1151 dbSNP
rs369999753 1152 dbSNP
rs536242840 1167 dbSNP
rs759077636 1169 dbSNP
rs931580936 1177 dbSNP
rs1292971361 1197 dbSNP
rs73504733 1201 dbSNP
rs1175613827 1202 dbSNP
rs190523562 1202 dbSNP
rs965513181 1202 dbSNP
rs1167318101 1217 dbSNP
rs1356777480 1233 dbSNP
rs16979417 1237 dbSNP
rs1293236811 1239 dbSNP
rs1365073728 1254 dbSNP
rs985955052 1257 dbSNP
rs954132620 1259 dbSNP
rs556448336 1260 dbSNP
rs1417702792 1262 dbSNP
rs1003585913 1264 dbSNP
rs1379422582 1269 dbSNP
rs886097295 1278 dbSNP
rs572452285 1282 dbSNP
rs1225512607 1286 dbSNP
rs1159231996 1293 dbSNP
rs554022419 1300 dbSNP
rs1048045134 1310 dbSNP
rs995075785 1312 dbSNP
rs968657573 1317 dbSNP
rs1020210180 1320 dbSNP
rs1420757442 1326 dbSNP
rs1195777382 1330 dbSNP
rs1422486861 1332 dbSNP
rs1253843093 1333 dbSNP
rs1010118910 1342 dbSNP
rs899345928 1347 dbSNP
rs1478161425 1356 dbSNP
rs150340258 1357 dbSNP
rs16979414 1367 dbSNP
rs943437337 1368 dbSNP
rs1463312344 1370 dbSNP
rs1287126660 1372 dbSNP
rs911934066 1373 dbSNP
rs769071993 1377 dbSNP
rs1048564327 1382 dbSNP
rs565542281 1382 dbSNP
rs930985276 1389 dbSNP
rs918877247 1390 dbSNP
rs73504729 1393 dbSNP
rs184761327 1394 dbSNP
rs1464560868 1401 dbSNP
rs912749598 1402 dbSNP
rs1243873397 1411 dbSNP
rs1476046935 1420 dbSNP
rs1276588163 1431 dbSNP
rs924618257 1433 dbSNP
rs1476423273 1441 dbSNP
rs1399609985 1442 dbSNP
rs1387457568 1443 dbSNP
rs985629667 1446 dbSNP
rs1319742193 1451 dbSNP
rs954301683 1453 dbSNP
rs978006478 1456 dbSNP
rs967908992 1462 dbSNP
rs915092925 1466 dbSNP
rs567752824 1484 dbSNP
rs549445789 1488 dbSNP
rs1287425715 1490 dbSNP
rs959160286 1492 dbSNP
rs1298541411 1498 dbSNP
rs979881311 1499 dbSNP
rs1286577193 1500 dbSNP
rs1035215462 1518 dbSNP
rs1057208750 1527 dbSNP
rs1209484986 1528 dbSNP
rs1357303331 1531 dbSNP
rs55673034 1532 dbSNP
rs981880770 1532 dbSNP
rs1189108435 1545 dbSNP
rs1411627015 1547 dbSNP
rs144833884 1547 dbSNP
rs1471423622 1547 dbSNP
rs200292466 1547 dbSNP
rs1175261228 1550 dbSNP
rs1377215508 1550 dbSNP
rs1414580111 1551 dbSNP
rs1444075606 1555 dbSNP
rs1281544679 1558 dbSNP
rs1430758473 1561 dbSNP
rs1351664139 1572 dbSNP
rs1218722860 1580 dbSNP
rs192382455 1590 dbSNP
rs1278210839 1593 dbSNP
rs1350709162 1601 dbSNP
rs566809848 1603 dbSNP
rs780732902 1605 dbSNP
rs1025958756 1606 dbSNP
rs1251688198 1609 dbSNP
rs995106678 1610 dbSNP
rs187370844 1617 dbSNP
rs1010171243 1625 dbSNP
rs1017796271 1636 dbSNP
rs1477459432 1643 dbSNP
rs1170324520 1651 dbSNP
rs1396325551 1655 dbSNP
rs1008178323 1659 dbSNP
rs890628505 1662 dbSNP
rs1167942638 1665 dbSNP
rs1368614065 1672 dbSNP
rs1482473016 1672 dbSNP
rs1052307088 1673 dbSNP
rs1001362021 1675 dbSNP
rs934747522 1684 dbSNP
rs1301378623 1685 dbSNP
rs1314071936 1690 dbSNP
rs1026729889 1703 dbSNP
rs903204100 1707 dbSNP
rs1043013305 1710 dbSNP
rs1274096468 1712 dbSNP
rs780485614 1717 dbSNP
rs1218287485 1719 dbSNP
rs1254471497 1721 dbSNP
rs1341291501 1742 dbSNP
rs745911959 1746 dbSNP
rs1036626312 1750 dbSNP
rs1187381191 1754 dbSNP
rs1388252133 1763 dbSNP
rs1278627668 1767 dbSNP
rs73504722 1772 dbSNP
rs757408947 1776 dbSNP
rs915125571 1782 dbSNP
rs562494570 1794 dbSNP
rs1302239211 1796 dbSNP
rs1324194782 1797 dbSNP
rs1396955746 1805 dbSNP
rs374820307 1821 dbSNP
rs1407696723 1833 dbSNP
rs1441740477 1837 dbSNP
rs990689312 1846 dbSNP
rs937879698 1852 dbSNP
rs1230212696 1861 dbSNP
rs1423968328 1874 dbSNP
rs1271258448 1875 dbSNP
rs751809886 1884 dbSNP
rs1422480012 1888 dbSNP
rs1212201432 1895 dbSNP
rs1274732113 1898 dbSNP
rs982283695 1901 dbSNP
rs950474016 1909 dbSNP
rs1025988399 1914 dbSNP
rs1258995060 1927 dbSNP
rs1182979068 1935 dbSNP
rs184194854 1940 dbSNP
rs1193860089 1944 dbSNP
rs771324534 1948 dbSNP
rs963034957 1952 dbSNP
rs1017912196 1959 dbSNP
rs1166743937 1963 dbSNP
rs979549398 1964 dbSNP
rs192782211 1965 dbSNP
rs1007793577 1967 dbSNP
rs1236442843 1970 dbSNP
rs188243182 1971 dbSNP
rs945415190 1981 dbSNP
rs1383978858 1993 dbSNP
rs1319626714 1998 dbSNP
rs1240374465 2005 dbSNP
rs1030469262 2024 dbSNP
rs1295435227 2032 dbSNP
rs1335098238 2033 dbSNP
rs1318686660 2034 dbSNP
rs913920964 2041 dbSNP
rs1260278012 2046 dbSNP
rs999361793 2049 dbSNP
rs1486590531 2056 dbSNP
rs1242848555 2059 dbSNP
rs1255390230 2062 dbSNP
rs1319724864 2066 dbSNP
rs1484616260 2068 dbSNP
rs1311693145 2071 dbSNP
rs77209950 2077 dbSNP
rs1189824592 2085 dbSNP
rs144242519 2087 dbSNP
rs150774626 2088 dbSNP
rs138194483 2089 dbSNP
rs1396539963 2090 dbSNP
rs571742071 2092 dbSNP
rs1329209400 2096 dbSNP
rs1362261001 2106 dbSNP
rs1455468961 2110 dbSNP
rs182672776 2116 dbSNP
rs548036761 2117 dbSNP
rs1413425900 2118 dbSNP
rs1315225774 2119 dbSNP
rs947424850 2124 dbSNP
rs894477311 2125 dbSNP
rs1304493854 2133 dbSNP
rs1318349124 2147 dbSNP
rs1254854061 2152 dbSNP
rs757172114 2153 dbSNP
rs1456018876 2167 dbSNP
rs190961115 2171 dbSNP
rs761275277 2183 dbSNP
rs1175258919 2196 dbSNP
rs1165851271 2197 dbSNP
rs1248687734 2200 dbSNP
rs1421050336 2205 dbSNP
rs115407436 2208 dbSNP
rs1394517862 2210 dbSNP
rs1379068897 2211 dbSNP
rs1432912191 2211 dbSNP
rs1178568806 2214 dbSNP
rs1458308627 2240 dbSNP
rs927806754 2250 dbSNP
rs186685681 2251 dbSNP
rs369120100 2253 dbSNP
rs1375103503 2257 dbSNP
rs1300126905 2261 dbSNP
rs1368206311 2266 dbSNP
rs1050012365 2268 dbSNP
rs1264652097 2271 dbSNP
rs1341285728 2273 dbSNP
rs1202204857 2274 dbSNP
rs1245316037 2279 dbSNP
rs567790270 2280 dbSNP
rs567190820 2285 dbSNP
rs1196645865 2286 dbSNP
rs1252589798 2288 dbSNP
rs1396216699 2288 dbSNP
rs142715890 2288 dbSNP
rs1428390776 2288 dbSNP
rs551109464 2288 dbSNP
rs1168815523 2296 dbSNP
rs1356683769 2306 dbSNP
rs1317252613 2314 dbSNP
rs1400907690 2316 dbSNP
rs947712677 2319 dbSNP
rs1239311433 2322 dbSNP
rs914883891 2323 dbSNP
rs1391826557 2326 dbSNP
rs989201046 2326 dbSNP
rs1384722843 2327 dbSNP
rs371816287 2331 dbSNP
rs534201527 2332 dbSNP
rs116369995 2333 dbSNP
rs1307910063 2335 dbSNP
rs945465811 2335 dbSNP
rs1467257275 2336 dbSNP
rs913974270 2336 dbSNP
rs1253660176 2341 dbSNP
rs80197442 2346 dbSNP
rs1340810197 2347 dbSNP
rs1485565909 2347 dbSNP
rs544805619 2347 dbSNP
rs1427024999 2348 dbSNP
rs1415222637 2352 dbSNP
rs1358994426 2357 dbSNP
rs1462651708 2358 dbSNP
rs1326038004 2361 dbSNP
rs1158594385 2376 dbSNP
rs1440802519 2377 dbSNP
rs1344134400 2378 dbSNP
rs1428017465 2381 dbSNP
rs919044918 2383 dbSNP
rs867222996 2384 dbSNP
rs1365606868 2388 dbSNP
rs973149679 2390 dbSNP
rs1235413275 2397 dbSNP
rs1274016219 2402 dbSNP
rs926574922 2403 dbSNP
rs1215342704 2405 dbSNP
rs963066130 2407 dbSNP
rs910208617 2408 dbSNP
rs1244336986 2410 dbSNP
rs970348884 2415 dbSNP
rs1026836625 2422 dbSNP
rs986800304 2424 dbSNP
rs954958299 2431 dbSNP
rs1030917078 2440 dbSNP
rs1476375293 2441 dbSNP
rs1165261430 2449 dbSNP
rs1015297149 2461 dbSNP
rs549303622 2467 dbSNP
rs1160568213 2473 dbSNP
rs1007893695 2482 dbSNP
rs1414048533 2489 dbSNP
rs1310962150 2497 dbSNP
rs1357186845 2502 dbSNP
rs998997554 2507 dbSNP
rs967511220 2511 dbSNP
rs1283558818 2512 dbSNP
rs769875971 2532 dbSNP
rs1021704069 2535 dbSNP
rs1222150520 2537 dbSNP
rs1011597992 2543 dbSNP
rs1215847026 2560 dbSNP
rs894508501 2565 dbSNP
rs1055776530 2566 dbSNP
rs1351230835 2574 dbSNP
rs1002534787 2575 dbSNP
rs1318085014 2588 dbSNP
rs201244164 2598 dbSNP
rs551658741 2600 dbSNP
rs1230515106 2603 dbSNP
rs1330001864 2614 dbSNP
rs1301598425 2618 dbSNP
rs1231961603 2619 dbSNP
rs1468233409 2624 dbSNP
rs1178454389 2626 dbSNP
rs1408128616 2631 dbSNP
rs1046737609 2637 dbSNP
rs1353599443 2638 dbSNP
rs199911591 2638 dbSNP
rs1435107136 2653 dbSNP
rs1440237084 2653 dbSNP
rs201685861 2653 dbSNP
rs919077257 2653 dbSNP
rs1281462492 2655 dbSNP
rs1377810755 2671 dbSNP
rs1037486167 2675 dbSNP
rs777196771 2684 dbSNP
rs183390613 2686 dbSNP
rs569121822 2694 dbSNP
rs753330981 2695 dbSNP
rs1420850053 2700 dbSNP
rs1387845585 2702 dbSNP
rs1171330514 2710 dbSNP
rs904083287 2711 dbSNP
rs1465642025 2716 dbSNP
rs1436399981 2719 dbSNP
rs955134786 2725 dbSNP
rs1201888912 2726 dbSNP
rs892593124 2731 dbSNP
rs1056562591 2737 dbSNP
rs939396107 2741 dbSNP
rs1454619773 2745 dbSNP
rs923579032 2748 dbSNP
rs926656099 2751 dbSNP
rs1045447740 2754 dbSNP
rs948695408 2759 dbSNP
rs1331199981 2762 dbSNP
rs752333016 2763 dbSNP
rs1401301045 2764 dbSNP
rs1440270534 2771 dbSNP
rs1323907293 2776 dbSNP
rs550547171 2781 dbSNP
rs973919020 2782 dbSNP
rs967542227 2786 dbSNP
rs1192598448 2790 dbSNP
rs114272451 2795 dbSNP
rs1286344388 2801 dbSNP
rs908349507 2817 dbSNP
rs372135542 2818 dbSNP
rs1211302391 2821 dbSNP
rs1263170667 2823 dbSNP
rs958745337 2824 dbSNP
rs986526603 2830 dbSNP
rs1192448350 2841 dbSNP
rs955277250 2862 dbSNP
rs147830909 2868 dbSNP
rs145853960 2870 dbSNP
rs1028014451 2874 dbSNP
rs1324007609 2883 dbSNP
rs1034771760 2886 dbSNP
rs528097825 2890 dbSNP
rs1002910481 2898 dbSNP
rs907196889 2910 dbSNP
rs1387413009 2912 dbSNP
rs547697472 2913 dbSNP
rs1325128645 2914 dbSNP
rs1433337624 2916 dbSNP
rs968362419 2927 dbSNP
rs190880344 2933 dbSNP
rs1328532467 2934 dbSNP
rs532773239 2937 dbSNP
rs892644172 2938 dbSNP
rs1056615548 2943 dbSNP
rs1003647266 2945 dbSNP
rs1395909011 2951 dbSNP
rs1403042461 2952 dbSNP
rs765937762 2961 dbSNP
rs1256492808 2967 dbSNP
rs560370328 2982 dbSNP
rs546842262 2991 dbSNP
rs1464277032 2998 dbSNP
rs1045108587 3000 dbSNP
rs930638656 3001 dbSNP
rs1158007664 3002 dbSNP
rs112336560 3003 dbSNP
rs772934312 3022 dbSNP
rs910265614 3024 dbSNP
rs1402909219 3047 dbSNP
rs920558737 3069 dbSNP
rs1050588619 3074 dbSNP
rs933040517 3090 dbSNP
rs1413310531 3091 dbSNP
rs1294822791 3099 dbSNP
rs922911397 3100 dbSNP
rs1475643854 3104 dbSNP
rs1038258134 3111 dbSNP
rs1258383493 3118 dbSNP
rs977671601 3119 dbSNP
rs946272657 3120 dbSNP
rs914746149 3128 dbSNP
rs768391775 3132 dbSNP
rs1279506321 3137 dbSNP
rs1484605643 3143 dbSNP
rs116497972 3146 dbSNP
rs1034478538 3147 dbSNP
rs981917055 3149 dbSNP
rs971452958 3166 dbSNP
rs1421565180 3174 dbSNP
rs1026039804 3175 dbSNP
rs73504721 3184 dbSNP
rs897703660 3197 dbSNP
rs1016109913 3202 dbSNP
rs142106582 3204 dbSNP
rs1315525649 3213 dbSNP
rs1257075837 3236 dbSNP
rs888942406 3239 dbSNP
rs1050207596 3242 dbSNP
rs115827368 3245 dbSNP
rs1491200366 3253 dbSNP
rs375844867 3253 dbSNP
rs956918198 3253 dbSNP
rs1345572694 3257 dbSNP
rs1212781341 3264 dbSNP
rs1341938940 3272 dbSNP
rs1035209648 3273 dbSNP
rs10422910 3274 dbSNP
rs1248667841 3276 dbSNP
rs905316885 3277 dbSNP
rs1179264044 3284 dbSNP
rs1384107892 3291 dbSNP
rs1339252840 3299 dbSNP
rs1041326980 3304 dbSNP
rs1178732062 3305 dbSNP
rs1399604455 3313 dbSNP
rs1332360256 3314 dbSNP
rs1411822942 3323 dbSNP
rs1461779234 3323 dbSNP
rs1421392526 3325 dbSNP
rs1296159464 3340 dbSNP
rs946309925 3341 dbSNP
rs1161179758 3358 dbSNP
rs914860800 3359 dbSNP
rs1398102429 3360 dbSNP
rs1446901691 3361 dbSNP
rs1472334477 3379 dbSNP
rs1385856726 3380 dbSNP
rs1024142857 3382 dbSNP
rs1185311716 3386 dbSNP
rs1456104365 3388 dbSNP
rs990360404 3395 dbSNP
rs937550371 3409 dbSNP
rs1236452096 3424 dbSNP
rs994897595 3431 dbSNP
rs1306759570 3444 dbSNP
rs1224967467 3446 dbSNP
rs1249843630 3454 dbSNP
rs1459216559 3456 dbSNP
rs1199377649 3464 dbSNP
rs147561518 3465 dbSNP
rs981564938 3481 dbSNP
rs1439125934 3482 dbSNP
rs1288185873 3483 dbSNP
rs1426469130 3486 dbSNP
rs971866887 3488 dbSNP
rs1168704936 3491 dbSNP
rs1025651328 3493 dbSNP
rs972692740 3503 dbSNP
rs1465782476 3506 dbSNP
rs1163718402 3510 dbSNP
rs776039182 3513 dbSNP
rs543820412 3516 dbSNP
rs74178145 3518 dbSNP
rs142512320 3521 dbSNP
rs1006123034 3522 dbSNP
rs575198347 3530 dbSNP
rs1029214223 3531 dbSNP
rs997293287 3536 dbSNP
rs539815409 3537 dbSNP
rs933814184 3546 dbSNP
rs1272758100 3547 dbSNP
rs1376288562 3548 dbSNP
rs901556574 3553 dbSNP
rs1247813784 3554 dbSNP
rs1485799052 3556 dbSNP
rs1041440513 3559 dbSNP
rs945756153 3561 dbSNP
rs1185174590 3573 dbSNP
rs1265840479 3575 dbSNP
rs921065102 3588 dbSNP
rs892786896 3589 dbSNP
rs1415201554 3600 dbSNP
rs372509355 3601 dbSNP
rs535610567 3601 dbSNP
rs1444650894 3605 dbSNP
rs1344562969 3606 dbSNP
rs1299928954 3610 dbSNP
rs1340949449 3621 dbSNP
rs1413929362 3630 dbSNP
rs1292980328 3642 dbSNP
rs1054666079 3660 dbSNP
rs569083182 3671 dbSNP
rs1290631728 3679 dbSNP
rs531161146 3684 dbSNP
rs1316379393 3686 dbSNP
rs1323132642 3696 dbSNP
rs1423846943 3705 dbSNP
rs1288761631 3708 dbSNP
rs1365950438 3714 dbSNP
rs1046281217 3715 dbSNP
rs987787257 3722 dbSNP
rs1210526430 3723 dbSNP
rs1254980484 3737 dbSNP
rs956970770 3740 dbSNP
rs1181973339 3743 dbSNP
rs1437674962 3744 dbSNP
rs1379188743 3747 dbSNP
rs1397639144 3748 dbSNP
rs1470865843 3749 dbSNP
rs1160445607 3762 dbSNP
rs1244660361 3765 dbSNP
rs111868890 3768 dbSNP
rs1342660585 3768 dbSNP
rs1433876162 3768 dbSNP
rs35378116 3768 dbSNP
rs59543995 3768 dbSNP
rs1450511173 3772 dbSNP
rs985786921 3782 dbSNP
rs1372763595 3788 dbSNP
rs1220367502 3795 dbSNP
rs1490631317 3797 dbSNP
rs571548508 3799 dbSNP
rs1294324257 3809 dbSNP
rs1354981981 3815 dbSNP
rs868000386 3819 dbSNP
rs1353558963 3821 dbSNP
rs982347906 3822 dbSNP
rs1231943093 3826 dbSNP
rs1479411515 3834 dbSNP
rs1179901336 3839 dbSNP
rs1380865596 3843 dbSNP
rs969969558 3847 dbSNP
rs1427063933 3851 dbSNP
rs918706500 3852 dbSNP
rs1335178381 3855 dbSNP
rs1354085410 3856 dbSNP
rs995352118 3857 dbSNP
rs35888328 3858 dbSNP
rs899239333 3860 dbSNP
rs1333394735 3864 dbSNP
rs1378335838 3867 dbSNP
rs76374791 3878 dbSNP
rs1273563918 3884 dbSNP
rs1347652140 3892 dbSNP
rs199615362 3899 dbSNP
rs887063619 3899 dbSNP
rs535282118 3902 dbSNP
rs1200015652 3904 dbSNP
rs567886354 3912 dbSNP
rs1051452817 3915 dbSNP
rs909870474 3919 dbSNP
rs1467620552 3924 dbSNP
rs542343526 3927 dbSNP
rs933886580 3933 dbSNP
rs984736339 3937 dbSNP
rs148788246 3938 dbSNP
rs112887426 3940 dbSNP
rs1028834275 3945 dbSNP
rs1417810514 3947 dbSNP
rs1173060286 3950 dbSNP
rs1401191586 3951 dbSNP
rs997794198 3954 dbSNP
rs1440245830 3958 dbSNP
rs1322222334 3959 dbSNP
rs181874978 3960 dbSNP
rs914979457 3969 dbSNP
rs987846241 3970 dbSNP
rs1437647558 3972 dbSNP
rs1269935820 3973 dbSNP
rs777074924 3975 dbSNP
rs1220141989 3985 dbSNP
rs1344585572 3991 dbSNP
rs965849416 4000 dbSNP
rs1020016846 4011 dbSNP
rs1009929593 4016 dbSNP
rs927617788 4033 dbSNP
rs551915699 4043 dbSNP
rs892819476 4052 dbSNP
rs755249600 4054 dbSNP
rs1054028676 4056 dbSNP
rs1192247071 4057 dbSNP
rs1240185861 4058 dbSNP
rs1478669806 4068 dbSNP
rs191301150 4068 dbSNP
rs1343523530 4080 dbSNP
rs982785275 4082 dbSNP
rs563056692 4092 dbSNP
rs969646287 4095 dbSNP
rs544894546 4097 dbSNP
rs1406499886 4111 dbSNP
rs574290813 4133 dbSNP
rs1318221096 4135 dbSNP
rs562226103 4145 dbSNP
rs1338981750 4150 dbSNP
rs1402234103 4154 dbSNP
rs916760742 4163 dbSNP
rs540818240 4168 dbSNP
rs1242007705 4180 dbSNP
rs1285411799 4197 dbSNP
rs145419213 4198 dbSNP
rs527612489 4200 dbSNP
rs1480519780 4201 dbSNP
rs1283786367 4205 dbSNP
rs112245144 4206 dbSNP
rs1489187390 4214 dbSNP
rs963466453 4215 dbSNP
rs1192019556 4227 dbSNP
rs1014958401 4228 dbSNP
rs1488152232 4231 dbSNP
rs1423416092 4239 dbSNP
rs1261896299 4240 dbSNP
rs918739004 4260 dbSNP
rs1370321092 4273 dbSNP
rs954879755 4278 dbSNP
rs1158565421 4279 dbSNP
rs1359106535 4291 dbSNP
rs186452244 4298 dbSNP
rs1030300963 4302 dbSNP
rs1277923520 4303 dbSNP
rs1374506418 4310 dbSNP
rs998529031 4312 dbSNP
rs575558729 4313 dbSNP
rs1325868327 4330 dbSNP
rs556996564 4331 dbSNP
rs760887570 4336 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 374879.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000591998.1 | 3UTR | UCUUUAUUGUUUUUUUAUGUAGGUCUGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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