pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-3p
Sequence 58| CAUCAGAAUUCAUGGAGGCUAG |79
Evidence Experimental
Experiments 454
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31490809 22 COSMIC
COSN31579735 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs543123304 18 dbSNP
rs1450988157 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZBTB5   
Synonyms -
Description zinc finger and BTB domain containing 5
Transcript NM_014872   
Expression
Putative miRNA Targets on ZBTB5
3'UTR of ZBTB5
(miRNA target sites are highlighted)
>ZBTB5|NM_014872|3'UTR
   1 CTGTTTGTCCTTACAAGACAACGCTGAGGCCAGTTGTCAGACTGAATTTCTTTTGGTAAGCAGTTAATGCCTTTGGGTTC
  81 GAGGCTTCCAGCTGCCCAGTGGCTCTTAAACAGTTTAGCAACTAATAACCGGAGAACTAACATGTAGTATTTGTGCTGCT
 161 GCATTTCTGAGTGAAGTGCACGTCTTGGGAAAGGGATGCAATCCCTGAAACCAGGTGCTTCCTTGGGGTTGAGTAATGCA
 241 GTCAGAAAGTAGTTTGTAATTGATATTAAAAGTGGCACATTTAAAAATTTAAAAATTGAAGTGCAAAAAAAATTTTTTAG
 321 CAATTTTTGTAAAACTGTGTAGCATTTAAATTTCCTATACCTTCTGATGGGAGTATTATATCCCTGTATAGTGATGCAAA
 401 ATGCACTTATGTGTAACCAGTGGTGATTTGGTGCCTGTCTTAAAGGAAGGCCTTTGAGGACACACCTGTCTGCCACAAAT
 481 GCTTTAAAGTGTATCATGAGCTAGTCCTAGGCCTCAAAGTACTGTATTTTTTATTTTTACCTGATTTGCAGTCATAAACA
 561 CTGCACTTTGGTGCTGACACTGGGTCCAGAGTGAGCATTCTCTTGGACTATTAGATGTATATACTTTTGAATACATCACT
 641 GTTGGATAGATGTTTTAACAGTTTTTTCTGGTTTAAAAACCAAATTGTAAATGGAGTGTGTACTTGTAGAGAGTGACAAG
 721 GTATTGTTTCCCTATGTGCTGTTTGAGCAGTATTTTAACCAACTTGTATTACAGATGTTACAGTTCCATGTTAGGAAGTC
 801 AGAAAAGACTTGTGTTTGTCTTTGTTCTGCTGATGTGGAGTCATGTTTTGTGGGGTCTTCCATGGCACATTTACCTGTTG
 881 CTCCGTCCAGATGTTGAGGGCCAGTCTAGGCTGACACATCCTACCCGAGGACAAGCCTGTTCTCCATTTCTTCACTCTCC
 961 CCTCCCCATATAGCAACTCTCCCAGGTTTAGATTACCGTTTTCGACGACAGATTAACCAAAAATGCCCCACACAGGTTTT
1041 ATTACTGTTATATACTATACTTTTAACAGTACAGACCCTAAATTTTATTATTTGTTGCTCCCCCAATCTGATACCAAATG
1121 TTTAAAGTTGTTTGAAATCCAAACATGGTAGTGTTCATGGGTAAATATTTTCTAGGCTATGTAAGAGTTAGCAGCCCATA
1201 GCATAGAAGTAATCAAGTAGCATCTGAGACTGTTGGAGGCACTAGGGCCTCTCTGGGCCCTACAGCCTCACTTCCCCAGC
1281 CTCACCTTGCTGTCCTCTGACACTGCCATCAGGGCTGTTAGTGGCACCTGTATGAGGCCAAGTGTGCGTCCAGGGGAACA
1361 GCACAGGTTAATGCGTCTCCCTAGAACTCATGAAGTCAGTTTAATTCATGCATGAACATGAGTTCATTTTATGTTTTATA
1441 TAGCTTTCTTAGACATACCAAACCATCATTCATAAATCAGATAAATTATTCAGTTTTTGTGTTTAGAAAGCTAAGTATGT
1521 GTAGCTGGAAACAAAAATGAGCGTGTTTTCTCTCCTGTTAATCTAGAGTGTGCAGTTACACATGTGTGGATAATTTCATG
1601 TTCCAGGGGCGCTTGGCATCTCCCATGGACTGATTCCCAGGAAGAAAAGCCCAAAGGGAAACCCACGATTCCTTTCGAGT
1681 AGATGTGGGAAAGAGCCCATTGGAGGATATGAGGTCCTGTGAAATTCAGTTGTGTGTGTGGCTCCTTGTTAGCAGTCATG
1761 TTGACATGGTGTTAGGAGGCTCCCCATCCACCCTTTACATGATGTAGGGACCAGTGTCTTGTGAGATTAACCTTGGGACA
1841 CAGTGGGTTAGCCTGGAGAAAATGAGAGGCCCTGCCTGGACCCAGGGAGAGGAGCCAGTGACACAGGCAGAGCGGTGCAG
1921 CCCTCCTTCCCTTCCATTTGGAGGAGGTGGTGCCAGGAGCCTGCCCGCTTACCTCTGCTGAAGCATAAGTGGACTTTGCT
2001 TTTGGGGCTTATCTCTGATACATGCTGGAGCCCTGCCTCTCCACTGCTAGATGGAACCTGGAATCTCTCATCTACCTCTT
2081 AGTCTGTCAGTTTCTACGTGTGAGAAGCAAGCTTGTGGGCCAGTGTCCTTGTACATGCTGTAGCACTTAAAAAATAATTC
2161 CAGGGTTCCCTGGAAAACCAGTCCCAGGGTTCCTATGATCTGTAGTTTCTACCTGGATTATAACTGGTTTTGGGTACCTG
2241 AATTTTGATTGGTTAGCCTTAATTATAGTCTGGCGTGATCATGTAGAATCTTTTCTGGTGAACAGATCATAAAGTTCTAT
2321 CAAGGAGTTCTATCAAGGCATCCATGTCAGTGGTGCTATGCTGGTTACAACTTGAGATTTTTGAAATAAAAAATTTGTCA
2401 TATTCATGCCTCTAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUCGGAGG-UACUUAAGACUAc 5'
            | ::||| ||   ||||||| 
Target 5' taAATTTCCTATACCTTCTGATg 3'
347 - 369 152.00 -13.60
2
miRNA  3' gaucggAGGUACUUAAGACUAc 5'
                | | ||||||:|||| 
Target 5' tttgggTACCTGAATTTTGATt 3'
2229 - 2250 148.00 -14.30
3
miRNA  3' gaUCGGA--GGUA---CUU----AAGACUAc 5'
            :|| |  :|||   |||    |||||:| 
Target 5' ctGGCGTGATCATGTAGAATCTTTTCTGGTg 3'
2270 - 2300 132.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30528925 11 COSMIC
COSN27005513 22 COSMIC
COSN30510475 33 COSMIC
COSN14392752 80 COSMIC
COSN31598790 134 COSMIC
COSN22441726 137 COSMIC
COSN31529002 311 COSMIC
COSN31539760 312 COSMIC
COSN31573076 313 COSMIC
COSN31529266 314 COSMIC
COSN31544395 349 COSMIC
COSN30539824 442 COSMIC
COSN2323303 447 COSMIC
COSN20106196 723 COSMIC
COSN6390529 998 COSMIC
COSN9283261 1004 COSMIC
COSN9283260 1151 COSMIC
COSN6390528 1231 COSMIC
COSN32213049 1310 COSMIC
COSN6390527 1431 COSMIC
COSN2323301 1484 COSMIC
COSN16447542 1880 COSMIC
COSN16181211 1881 COSMIC
COSN8582728 1929 COSMIC
COSN31518429 2098 COSMIC
COSN20831667 2224 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769202485 1 dbSNP
rs747527176 2 dbSNP
rs780406941 7 dbSNP
rs758692924 14 dbSNP
rs1460462093 16 dbSNP
rs1415658901 17 dbSNP
rs746044862 19 dbSNP
rs374324471 22 dbSNP
rs757598933 23 dbSNP
rs753934910 24 dbSNP
rs764151047 25 dbSNP
rs773557887 33 dbSNP
rs756068721 34 dbSNP
rs752593639 36 dbSNP
rs767278801 37 dbSNP
rs759283583 38 dbSNP
rs201378593 39 dbSNP
rs1235613630 46 dbSNP
rs917041817 63 dbSNP
rs776111841 65 dbSNP
rs992487956 71 dbSNP
rs1473417414 75 dbSNP
rs184801425 76 dbSNP
rs961365002 80 dbSNP
rs1174366398 81 dbSNP
rs936992530 87 dbSNP
rs553513279 91 dbSNP
rs760296472 99 dbSNP
rs192991600 105 dbSNP
rs1309096720 107 dbSNP
rs1372806773 109 dbSNP
rs1403435804 111 dbSNP
rs537413067 121 dbSNP
rs1298796411 129 dbSNP
rs187897598 130 dbSNP
rs550814351 131 dbSNP
rs868430021 133 dbSNP
rs1336805585 137 dbSNP
rs1360106858 138 dbSNP
rs1477923043 142 dbSNP
rs1491178796 143 dbSNP
rs151008644 143 dbSNP
rs983337531 144 dbSNP
rs1238079033 147 dbSNP
rs1483932019 148 dbSNP
rs1353175691 149 dbSNP
rs1219937507 150 dbSNP
rs1307975224 151 dbSNP
rs955595973 170 dbSNP
rs1186438634 173 dbSNP
rs1293351643 177 dbSNP
rs866862017 181 dbSNP
rs143603489 182 dbSNP
rs141173742 187 dbSNP
rs1417311799 189 dbSNP
rs1032980575 190 dbSNP
rs1008869957 191 dbSNP
rs749633084 195 dbSNP
rs1362431105 197 dbSNP
rs1052999657 203 dbSNP
rs903077677 204 dbSNP
rs532212913 205 dbSNP
rs1344197375 214 dbSNP
rs1420542339 223 dbSNP
rs1422746788 224 dbSNP
rs935921374 228 dbSNP
rs1264633077 239 dbSNP
rs1488644804 243 dbSNP
rs1190434501 247 dbSNP
rs1259850326 250 dbSNP
rs1490477539 253 dbSNP
rs146553903 266 dbSNP
rs1214448672 267 dbSNP
rs1392636888 269 dbSNP
rs1443325304 272 dbSNP
rs1164615380 279 dbSNP
rs1369424601 280 dbSNP
rs184622618 281 dbSNP
rs1164669673 291 dbSNP
rs537266234 291 dbSNP
rs1385953199 297 dbSNP
rs1014488682 298 dbSNP
rs1320620915 306 dbSNP
rs1044247800 312 dbSNP
rs1055948878 313 dbSNP
rs898926214 313 dbSNP
rs937066611 313 dbSNP
rs948558395 314 dbSNP
rs1246659758 315 dbSNP
rs1037299377 319 dbSNP
rs1328743174 319 dbSNP
rs940385636 319 dbSNP
rs1249989663 329 dbSNP
rs529890022 336 dbSNP
rs144219714 339 dbSNP
rs1261438249 340 dbSNP
rs908786344 341 dbSNP
rs1257434706 347 dbSNP
rs983088960 355 dbSNP
rs1180077490 356 dbSNP
rs770336440 357 dbSNP
rs866659408 362 dbSNP
rs1159355499 370 dbSNP
rs544479358 378 dbSNP
rs575752504 382 dbSNP
rs759502967 386 dbSNP
rs1379762837 388 dbSNP
rs1397626619 395 dbSNP
rs1286223938 397 dbSNP
rs748349483 403 dbSNP
rs983690346 409 dbSNP
rs139606922 410 dbSNP
rs1383573402 417 dbSNP
rs967398775 418 dbSNP
rs1027902987 439 dbSNP
rs1014209212 446 dbSNP
rs974865068 446 dbSNP
rs1473089424 447 dbSNP
rs1182473420 449 dbSNP
rs746011310 452 dbSNP
rs1430988866 456 dbSNP
rs1174733120 461 dbSNP
rs964860443 468 dbSNP
rs1480639858 491 dbSNP
rs895724081 492 dbSNP
rs1019004165 507 dbSNP
rs1410162559 517 dbSNP
rs1191391139 519 dbSNP
rs1001787015 522 dbSNP
rs1365731256 523 dbSNP
rs1218779510 526 dbSNP
rs1302061347 528 dbSNP
rs755001479 530 dbSNP
rs1313956582 531 dbSNP
rs1203650229 533 dbSNP
rs898894829 534 dbSNP
rs1483601805 535 dbSNP
rs891758977 540 dbSNP
rs1037442907 541 dbSNP
rs1234299505 542 dbSNP
rs1262470042 545 dbSNP
rs1190208718 554 dbSNP
rs1425283137 556 dbSNP
rs1434351205 561 dbSNP
rs558888266 580 dbSNP
rs1166675760 591 dbSNP
rs1389446720 598 dbSNP
rs1430224375 613 dbSNP
rs1032081428 619 dbSNP
rs1309609392 627 dbSNP
rs545202864 628 dbSNP
rs940354352 631 dbSNP
rs1206986829 634 dbSNP
rs1294280781 638 dbSNP
rs573299760 645 dbSNP
rs145784269 647 dbSNP
rs904422036 649 dbSNP
rs1204611202 651 dbSNP
rs1051872495 652 dbSNP
rs1231144757 657 dbSNP
rs934228334 658 dbSNP
rs922859647 660 dbSNP
rs1220406686 661 dbSNP
rs1044361911 666 dbSNP
rs1246887082 668 dbSNP
rs1469450685 668 dbSNP
rs149824327 672 dbSNP
rs567479519 675 dbSNP
rs191290855 684 dbSNP
rs926011380 693 dbSNP
rs1411374982 694 dbSNP
rs1404496505 707 dbSNP
rs1056844909 709 dbSNP
rs1165784152 714 dbSNP
rs1351799918 715 dbSNP
rs978872876 719 dbSNP
rs967366577 725 dbSNP
rs1365940286 726 dbSNP
rs1437922958 726 dbSNP
rs34811555 729 dbSNP
rs386414933 729 dbSNP
rs10639606 730 dbSNP
rs2308190 730 dbSNP
rs939774388 734 dbSNP
rs913192392 738 dbSNP
rs1336478222 741 dbSNP
rs1206358294 742 dbSNP
rs1266940784 750 dbSNP
rs1464909516 752 dbSNP
rs1472364271 763 dbSNP
rs1182206993 768 dbSNP
rs537346178 771 dbSNP
rs1455837656 772 dbSNP
rs1158634474 777 dbSNP
rs1389502129 781 dbSNP
rs1168313126 789 dbSNP
rs1332816474 790 dbSNP
rs1248888219 807 dbSNP
rs1461378173 819 dbSNP
rs770683186 820 dbSNP
rs1340373556 836 dbSNP
rs1048534995 839 dbSNP
rs1286320343 843 dbSNP
rs993245420 850 dbSNP
rs1226202576 856 dbSNP
rs931005605 858 dbSNP
rs1329279831 862 dbSNP
rs1206348950 873 dbSNP
rs1276473003 874 dbSNP
rs920833458 882 dbSNP
rs1195324745 883 dbSNP
rs1422118147 884 dbSNP
rs187982894 885 dbSNP
rs1259374368 886 dbSNP
rs1184405660 888 dbSNP
rs1462847179 890 dbSNP
rs552135460 900 dbSNP
rs531978217 901 dbSNP
rs1034697945 910 dbSNP
rs779787171 911 dbSNP
rs1170882353 919 dbSNP
rs1402203263 920 dbSNP
rs1415553198 921 dbSNP
rs1315283986 926 dbSNP
rs912052862 927 dbSNP
rs987689464 943 dbSNP
rs1287371936 945 dbSNP
rs116009302 947 dbSNP
rs1015964663 954 dbSNP
rs1253595374 955 dbSNP
rs1031779321 957 dbSNP
rs183226363 962 dbSNP
rs1319384305 968 dbSNP
rs886199895 968 dbSNP
rs1000183440 970 dbSNP
rs1204149606 972 dbSNP
rs1252885436 973 dbSNP
rs1439775390 977 dbSNP
rs1196946203 992 dbSNP
rs771083260 995 dbSNP
rs758362762 997 dbSNP
rs1478368130 998 dbSNP
rs1452864232 1002 dbSNP
rs529925091 1003 dbSNP
rs78934180 1006 dbSNP
rs139886359 1007 dbSNP
rs1397017223 1015 dbSNP
rs1308999511 1016 dbSNP
rs1396848431 1022 dbSNP
rs150682677 1025 dbSNP
rs1321123097 1030 dbSNP
rs1330037973 1032 dbSNP
rs895615988 1033 dbSNP
rs1234348330 1036 dbSNP
rs1305605032 1037 dbSNP
rs1057361537 1051 dbSNP
rs1384640680 1053 dbSNP
rs1227480000 1055 dbSNP
rs566190371 1057 dbSNP
rs564996625 1059 dbSNP
rs1164316839 1060 dbSNP
rs1446604760 1062 dbSNP
rs1004090643 1065 dbSNP
rs1236590723 1068 dbSNP
rs942836000 1069 dbSNP
rs926146682 1072 dbSNP
rs1266892293 1076 dbSNP
rs1452294051 1094 dbSNP
rs886842415 1094 dbSNP
rs1195557689 1096 dbSNP
rs1438743115 1104 dbSNP
rs571702998 1105 dbSNP
rs1253168683 1106 dbSNP
rs145679706 1122 dbSNP
rs1359394598 1125 dbSNP
rs1456679077 1125 dbSNP
rs1290337107 1126 dbSNP
rs1389544023 1134 dbSNP
rs776789819 1135 dbSNP
rs1327328227 1146 dbSNP
rs1362313758 1148 dbSNP
rs1434301428 1149 dbSNP
rs1361058628 1158 dbSNP
rs1306611637 1160 dbSNP
rs7039333 1164 dbSNP
rs920929843 1180 dbSNP
rs140676796 1189 dbSNP
rs551929614 1189 dbSNP
rs1265134140 1196 dbSNP
rs1215702778 1198 dbSNP
rs913319711 1200 dbSNP
rs1039224978 1204 dbSNP
rs1189812437 1229 dbSNP
rs1264440346 1231 dbSNP
rs1330670787 1249 dbSNP
rs1422488709 1255 dbSNP
rs943614377 1255 dbSNP
rs1384955698 1263 dbSNP
rs1424186275 1266 dbSNP
rs1187266012 1271 dbSNP
rs1364895483 1277 dbSNP
rs1303763707 1291 dbSNP
rs117163461 1292 dbSNP
rs1385835122 1293 dbSNP
rs1378613730 1298 dbSNP
rs1289410162 1305 dbSNP
rs551882510 1317 dbSNP
rs1394128807 1330 dbSNP
rs1158191072 1332 dbSNP
rs988027046 1337 dbSNP
rs1470659784 1340 dbSNP
rs542702668 1341 dbSNP
rs1286628912 1342 dbSNP
rs1328632766 1347 dbSNP
rs924661003 1348 dbSNP
rs1263078006 1350 dbSNP
rs980027916 1358 dbSNP
rs963267200 1360 dbSNP
rs978859920 1364 dbSNP
rs1476364579 1366 dbSNP
rs968669023 1367 dbSNP
rs1256193047 1370 dbSNP
rs1022979880 1375 dbSNP
rs1472004589 1377 dbSNP
rs1225441441 1378 dbSNP
rs532705613 1381 dbSNP
rs1281572963 1389 dbSNP
rs1012956475 1393 dbSNP
rs1247618995 1396 dbSNP
rs1302132271 1399 dbSNP
rs960228924 1402 dbSNP
rs1204143152 1403 dbSNP
rs950475375 1407 dbSNP
rs1306459309 1420 dbSNP
rs1035638347 1426 dbSNP
rs565528767 1433 dbSNP
rs1030519889 1439 dbSNP
rs7038960 1440 dbSNP
rs1310461513 1441 dbSNP
rs1221465476 1444 dbSNP
rs1281622370 1448 dbSNP
rs1344717702 1451 dbSNP
rs1283839451 1461 dbSNP
rs1406750973 1469 dbSNP
rs7022431 1470 dbSNP
rs1203423118 1474 dbSNP
rs1018533076 1477 dbSNP
rs1480101676 1480 dbSNP
rs1177357088 1484 dbSNP
rs537382906 1484 dbSNP
rs578208909 1485 dbSNP
rs1007106546 1486 dbSNP
rs1048091629 1487 dbSNP
rs1175310313 1487 dbSNP
rs369465069 1488 dbSNP
rs1436419875 1496 dbSNP
rs995224144 1497 dbSNP
rs1166480489 1519 dbSNP
rs1369645653 1523 dbSNP
rs1443226287 1528 dbSNP
rs899623822 1533 dbSNP
rs1387433008 1542 dbSNP
rs1171117899 1543 dbSNP
rs1304867465 1550 dbSNP
rs1226731163 1554 dbSNP
rs1274376137 1568 dbSNP
rs1039339515 1569 dbSNP
rs1308389001 1573 dbSNP
rs1204804067 1576 dbSNP
rs763863155 1579 dbSNP
rs1054696223 1584 dbSNP
rs1487248376 1584 dbSNP
rs768930898 1584 dbSNP
rs1192452006 1600 dbSNP
rs1253620973 1602 dbSNP
rs904783473 1606 dbSNP
rs890688835 1610 dbSNP
rs1052034649 1611 dbSNP
rs946214590 1617 dbSNP
rs558142578 1625 dbSNP
rs1457517689 1627 dbSNP
rs1326654287 1630 dbSNP
rs190685437 1636 dbSNP
rs1297450096 1640 dbSNP
rs1363129061 1647 dbSNP
rs978808845 1650 dbSNP
rs1274754991 1651 dbSNP
rs1239809082 1656 dbSNP
rs775099701 1658 dbSNP
rs530393493 1659 dbSNP
rs927247505 1663 dbSNP
rs566306619 1666 dbSNP
rs991472189 1667 dbSNP
rs546760377 1676 dbSNP
rs562931430 1677 dbSNP
rs983231841 1678 dbSNP
rs1263576294 1682 dbSNP
rs770279366 1683 dbSNP
rs1165853179 1684 dbSNP
rs950638893 1685 dbSNP
rs567500665 1692 dbSNP
rs1455672048 1695 dbSNP
rs1320517877 1698 dbSNP
rs1346295147 1708 dbSNP
rs1433412298 1709 dbSNP
rs1282795319 1712 dbSNP
rs188825631 1719 dbSNP
rs1293490882 1730 dbSNP
rs1336362548 1731 dbSNP
rs1206262006 1733 dbSNP
rs1283542272 1749 dbSNP
rs1026765108 1766 dbSNP
rs1359810019 1771 dbSNP
rs574183027 1774 dbSNP
rs1235532070 1776 dbSNP
rs1269611644 1780 dbSNP
rs995337133 1788 dbSNP
rs1188959845 1794 dbSNP
rs1420250669 1796 dbSNP
rs1471678859 1798 dbSNP
rs1158064626 1799 dbSNP
rs1431578030 1800 dbSNP
rs976275097 1806 dbSNP
rs899573194 1815 dbSNP
rs879791601 1816 dbSNP
rs1008279389 1822 dbSNP
rs1332717876 1827 dbSNP
rs1375256449 1829 dbSNP
rs1415752197 1832 dbSNP
rs964493564 1833 dbSNP
rs528489284 1836 dbSNP
rs890814940 1837 dbSNP
rs183428008 1840 dbSNP
rs1226108660 1841 dbSNP
rs1278445960 1843 dbSNP
rs1407247826 1845 dbSNP
rs1225413498 1846 dbSNP
rs1052409085 1850 dbSNP
rs1485244120 1851 dbSNP
rs1211302879 1852 dbSNP
rs1464467391 1853 dbSNP
rs191525510 1855 dbSNP
rs1021907093 1863 dbSNP
rs903470984 1865 dbSNP
rs13300415 1868 dbSNP
rs1043245595 1872 dbSNP
rs1471179395 1876 dbSNP
rs1171385091 1877 dbSNP
rs1010390281 1879 dbSNP
rs1435795731 1880 dbSNP
rs947562491 1882 dbSNP
rs915987341 1883 dbSNP
rs991602948 1884 dbSNP
rs1475450726 1887 dbSNP
rs1243399666 1889 dbSNP
rs41278301 1892 dbSNP
rs1389330858 1896 dbSNP
rs1327706597 1906 dbSNP
rs1057304600 1910 dbSNP
rs928659051 1913 dbSNP
rs768924969 1914 dbSNP
rs1205348266 1915 dbSNP
rs41278299 1916 dbSNP
rs942061864 1920 dbSNP
rs1282220036 1921 dbSNP
rs1339748439 1924 dbSNP
rs1272197824 1925 dbSNP
rs909122333 1936 dbSNP
rs1026880091 1942 dbSNP
rs71504531 1944 dbSNP
rs1251480600 1947 dbSNP
rs1439688008 1948 dbSNP
rs983364207 1962 dbSNP
rs780128661 1966 dbSNP
rs186280639 1967 dbSNP
rs559318139 1970 dbSNP
rs1452127189 1972 dbSNP
rs1383814626 1976 dbSNP
rs1167005340 1979 dbSNP
rs1396739827 1980 dbSNP
rs1339027886 1981 dbSNP
rs1440459021 1984 dbSNP
rs1354374737 1986 dbSNP
rs1171711045 1988 dbSNP
rs2840246 1989 dbSNP
rs1420981198 1990 dbSNP
rs964787958 1992 dbSNP
rs1305486812 1995 dbSNP
rs1324511369 1998 dbSNP
rs1226397261 1999 dbSNP
rs1443572818 2000 dbSNP
rs147346447 2015 dbSNP
rs563408281 2019 dbSNP
rs182245071 2025 dbSNP
rs578077580 2026 dbSNP
rs1205082486 2030 dbSNP
rs1439513323 2034 dbSNP
rs557406771 2039 dbSNP
rs999638177 2039 dbSNP
rs567349895 2046 dbSNP
rs1373358030 2052 dbSNP
rs1332738802 2063 dbSNP
rs1245339174 2066 dbSNP
rs1162287671 2067 dbSNP
rs1393137743 2068 dbSNP
rs1021883906 2070 dbSNP
rs1010867516 2071 dbSNP
rs1382683625 2076 dbSNP
rs1381508383 2078 dbSNP
rs1222335534 2081 dbSNP
rs1327916684 2082 dbSNP
rs956323942 2082 dbSNP
rs1292856177 2085 dbSNP
rs1335593999 2086 dbSNP
rs1373018206 2089 dbSNP
rs1802995 2094 dbSNP
rs1266841991 2097 dbSNP
rs1036239696 2098 dbSNP
rs903419063 2104 dbSNP
rs1441011234 2115 dbSNP
rs1003063646 2120 dbSNP
rs142716776 2135 dbSNP
rs1444935438 2160 dbSNP
rs1475283641 2164 dbSNP
rs75994273 2165 dbSNP
rs764341061 2169 dbSNP
rs1361491854 2176 dbSNP
rs1452978975 2177 dbSNP
rs1011725171 2183 dbSNP
rs1006171657 2192 dbSNP
rs887816480 2193 dbSNP
rs1047725034 2194 dbSNP
rs1356320007 2196 dbSNP
rs929178444 2199 dbSNP
rs1385381150 2209 dbSNP
rs1304963702 2220 dbSNP
rs923223585 2221 dbSNP
rs757031986 2222 dbSNP
rs1240428865 2229 dbSNP
rs138716946 2236 dbSNP
rs1346229121 2240 dbSNP
rs1210603710 2247 dbSNP
rs938771001 2257 dbSNP
rs1256452160 2265 dbSNP
rs910289001 2266 dbSNP
rs72739646 2273 dbSNP
rs1417956874 2274 dbSNP
rs552987048 2275 dbSNP
rs1177582933 2282 dbSNP
rs536217617 2288 dbSNP
rs143979782 2290 dbSNP
rs956467830 2303 dbSNP
rs1035971934 2308 dbSNP
rs550648380 2317 dbSNP
rs1003441794 2319 dbSNP
rs970236335 2323 dbSNP
rs973977893 2325 dbSNP
rs963806270 2330 dbSNP
rs1309863912 2336 dbSNP
rs1490526957 2339 dbSNP
rs1234121865 2340 dbSNP
rs1006222055 2344 dbSNP
rs1294098636 2346 dbSNP
rs887868549 2351 dbSNP
rs1249226318 2352 dbSNP
rs41278297 2357 dbSNP
rs75668063 2360 dbSNP
rs1240020644 2364 dbSNP
rs1452508797 2374 dbSNP
rs1192867084 2388 dbSNP
rs901739774 2392 dbSNP
rs955149058 2393 dbSNP
rs1168666409 2394 dbSNP
rs1354146895 2394 dbSNP
rs1462623363 2398 dbSNP
rs1299977299 2400 dbSNP
rs1368809965 2404 dbSNP
rs1440855455 2404 dbSNP
rs1304752192 2410 dbSNP
rs1373695070 2412 dbSNP
rs1213152095 2416 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 9925.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000307750.4 | 3UTR | CAAAAAAAAUUUUUUAGCAAUUUUUGUAAAACUGUGUAGCAUUUAAAUUUCCUAUACCUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA 0.596 0.11 0.714 0.06 6 Click to see details
HNSC 0.33 0.12 0.323 0.13 14 Click to see details
LUSC 0.297 0.14 0.161 0.28 15 Click to see details
BRCA -0.155 0.2 -0.121 0.26 31 Click to see details
UCEC -0.628 0.28 -0.500 0.33 3 Click to see details
LIHC 0.424 0.29 0.400 0.3 4 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
STAD 0.565 0.31 0.500 0.33 3 Click to see details
80 hsa-miR-2115-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057089 DDIT4 DNA damage inducible transcript 4 2 2
MIRT071216 FCF1 FCF1, rRNA-processing protein 2 2
MIRT226901 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT235961 BACH1 BTB domain and CNC homolog 1 2 2
MIRT294569 ZNF460 zinc finger protein 460 2 4
MIRT321046 RAC1 Rac family small GTPase 1 2 4
MIRT359666 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 8
MIRT366451 KLHL15 kelch like family member 15 2 2
MIRT405375 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT441794 TCEAL5 transcription elongation factor A like 5 2 2
MIRT443295 TCEAL3 transcription elongation factor A like 3 2 2
MIRT455275 DDX39B DExD-box helicase 39B 2 2
MIRT458523 C5orf22 chromosome 5 open reading frame 22 2 2
MIRT464960 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT466848 STX6 syntaxin 6 2 2
MIRT469252 RHOB ras homolog family member B 2 2
MIRT469825 RAB14 RAB14, member RAS oncogene family 2 4
MIRT470047 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT471420 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT472024 NPM1 nucleophosmin 1 2 2
MIRT484156 CENPN centromere protein N 2 2
MIRT485490 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT490462 PROSER2 proline and serine rich 2 2 2
MIRT493069 MTCH1 mitochondrial carrier 1 2 2
MIRT493573 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 8
MIRT494919 NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough 2 2
MIRT500439 ZMAT3 zinc finger matrin-type 3 2 2
MIRT500931 SRPR SRP receptor alpha subunit 2 4
MIRT501551 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT501809 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT502415 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT506504 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT507861 CCNE2 cyclin E2 2 2
MIRT510511 YOD1 YOD1 deubiquitinase 2 6
MIRT516073 RAB42 RAB42, member RAS oncogene family 2 2
MIRT519030 KYNU kynureninase 2 6
MIRT521762 PPIL1 peptidylprolyl isomerase like 1 2 4
MIRT522898 KCNJ3 potassium voltage-gated channel subfamily J member 3 2 4
MIRT527370 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT530691 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT530867 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531832 MTPAP mitochondrial poly(A) polymerase 2 4
MIRT533035 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT533165 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT533464 TRIM71 tripartite motif containing 71 2 2
MIRT534331 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT539372 ADSS adenylosuccinate synthase 2 6
MIRT545951 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT553283 TSR1 TSR1, ribosome maturation factor 2 2
MIRT553532 TMEM185B transmembrane protein 185B 2 4
MIRT556480 LIPA lipase A, lysosomal acid type 2 2
MIRT556975 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT557697 GATA6 GATA binding protein 6 2 2
MIRT558901 CCDC58 coiled-coil domain containing 58 2 2
MIRT559224 BLMH bleomycin hydrolase 2 2
MIRT559827 SLPI secretory leukocyte peptidase inhibitor 2 2
MIRT563435 SLC3A2 solute carrier family 3 member 2 2 2
MIRT569270 PCDH11X protocadherin 11 X-linked 2 2
MIRT571386 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572567 AFF1 AF4/FMR2 family member 1 2 2
MIRT610400 AR androgen receptor 2 2
MIRT611058 ZNF621 zinc finger protein 621 2 2
MIRT635118 TMEM233 transmembrane protein 233 2 2
MIRT641617 DEFB118 defensin beta 118 2 2
MIRT642146 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT647295 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT648155 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT652780 TENM3 teneurin transmembrane protein 3 2 2
MIRT657356 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT658718 ELN elastin 2 2
MIRT662441 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT665302 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT699898 RUNX1 runt related transcription factor 1 2 2
MIRT700921 PDS5A PDS5 cohesin associated factor A 2 2
MIRT700992 PDE3A phosphodiesterase 3A 2 2
MIRT707397 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 2
MIRT711895 INSIG2 insulin induced gene 2 2 2
MIRT712072 XRCC5 X-ray repair cross complementing 5 2 2
MIRT716121 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT724470 SMAD2 SMAD family member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2115-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-2115-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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