miRTarBase - #MIRT533331


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pre-miRNA Information
pre-miRNA hsa-mir-4778   
Genomic Coordinates chr2: 66358249 - 66358328
Description Homo sapiens miR-4778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4778-3p
Sequence 51| UCUUCUUCCUUUGCAGAGUUGA |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs936001904 2 dbSNP
rs925922703 3 dbSNP
rs184768286 8 dbSNP
rs1249073833 10 dbSNP
rs977504360 13 dbSNP
rs192300002 18 dbSNP
Putative Targets

Gene Information
Gene Symbol UNK   
Synonyms UNKEMPT, ZC3H5, ZC3HDC5
Description unkempt family zinc finger
Transcript NM_001080419   
Expression
Putative miRNA Targets on UNK
3'UTR of UNK
(miRNA target sites are highlighted)		 
>UNK|NM_001080419|3'UTR
   1 CCCTGCAGGCCTGGCCCAGCCTGGCCCAGATCTTCTCACCTAGGACTTTTTAAAGTATATATATATATATGAATATATAT
  81 ATATATGTGTATGTATGTATGTATATGTATATGATTATGTATATGTATACATTTCCGTATGTATGTATATGTATACATTT
 161 CCGTATGTGTGCAGGTATGCGTGGTGGTGTGGACAGTGTCTGTGTGTATATCTGTACATAGATATAGACACACACTTTAA
 241 AAGACTTACCAAGCACTTTTTAAAAGAAGAAACTATTTTGCAGTCCTCCCCTACCCACTCCCTGCCCTTCCCACTGCAGA
 321 GATGACATCCCCTCTTCTCCCACTGGCCTTTTGGCAGAGAATCTGGTTCTGTCTCTTTTTTAATGTAGGAACTAACTATT
 401 TTTAACTTCTTCCTGGGGCCTGAGCAGGGAAGGGTGGGACTGGAAGGCACTAAGGGGAAGGGAGAAGCCCTCAGGGCAGG
 481 CCCTGCTCCCCCTACCTCCTTGCCAGGGCAAGGGTGGAGTGTGGAAGACGTGGGTCCCCCAGAGCAGGCCTGGCCCCCAG
 561 CTGTGAGGGCCTCAGGGAGGCCCGAGGGGGAGTGCTGGGGGTCTCAGCTGGCTTAGCTCCTAAGTTTACCAAATGTTAAT
 641 TTAGTCTTGGGGAGAACAGCAAGGGCTGGAGGCCAGTGCTGCAGGGCCAGCCCCACTCCTGACACCTGGGCCCTTGAAGC
 721 TCCTTGAGGGGCAAGGCCCAGGAGTTCCAGCCCTCAGGTTCCTGAGGGTCCACCCTCAGTCCTTCCCCCCGCCGCCCCTC
 801 CCCGGACTCCCCACAAGAGCCTCCCTGGCCCCAGGGCCGCCTACCAGGCTGGTACTCATTCTATGACCACCGCCCCCAAC
 881 CAGCTGCCCCCAGCTCTCCCTGCCCCCTCCCCTCTCTGGCAGCTAGCAGGGCAATTGGCGGGGAGGAGTGCGGACTGAGG
 961 ACTGAGGACCAAGGGGGCCCAGGCCCTGCCCTCCTACCCGGAGGGGCTCCGTTTGCATTCCTTGGTGCTCTCTGAGTGCA
1041 GCTGGTGTCCCGCCCTGTTCTGGGCGGACGCCTGTGTGCGTGTGTGTGTGCCTGTCCAGTGTATATTGTGTCTTAGCTTC
1121 CATTTTAAAAATTGTTCTGTACAGAGAGAGATGCAGCAGGGGCGGGAGGGCAGAGTGGGCGGAGGGGAGCAGCCGCACCC
1201 CCAGCACCGGGTGTCTGCGGTAGGAACAAGAGGGCTGAGAGGGTCTGGTCCTGGCCCAGGCTCCCCCTTGGGCTCAGCAC
1281 GAAAGGGCTTTCAATGAATTAAGTGAAAACTTTTTCCTTTTTTACAAAAATGCAAAAATCAACAAAGCTCCAAACCTATT
1361 GGAAATAAAATATGAACTTGCAGTGGTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aguUGAGACGUUUCCUUCUUcu 5'
             |||:| :||| ||||||  
Target 5' agcACTTTTTAAAAGAAGAAac 3'
 252 - 273 151.00 -9.10
2 
miRNA  3' agUUGAGA---CGUUUCCUUCUUCu 5'
            ::| ||   | :||||:||||| 
Target 5' aaGGCACTAAGGGGAAGGGAGAAGc 3'
 444 - 468 144.00 -17.70
3 
miRNA  3' aguugAGACGUU-UCCUUCUUCu 5'
               |||||:: ||||| ||| 
Target 5' gggtgTCTGCGGTAGGAACAAGa 3'
 1209 - 1231 137.00 -16.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN25082890 9 COSMIC
COSN25082891 24 COSMIC
COSN25082892 27 COSMIC
COSN16378411 52 COSMIC
COSN18740395 70 COSMIC
COSN9322852 86 COSMIC
COSN20114441 105 COSMIC
COSN31488353 325 COSMIC
COSN31594251 645 COSMIC
COSN6112091 758 COSMIC
COSN7455541 792 COSMIC
COSN6112092 1007 COSMIC
COSN8603800 1022 COSMIC
COSN30164354 1033 COSMIC
COSN22339123 1058 COSMIC
COSN30161909 1061 COSMIC
COSN25399227 1069 COSMIC
COSN22358633 1071 COSMIC
COSN28763212 1129 COSMIC
COSN28799471 1133 COSMIC
COSN9673963 1155 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1252187367 4 dbSNP
rs747584624 12 dbSNP
rs769127962 21 dbSNP
rs1055744390 22 dbSNP
rs1220177530 24 dbSNP
rs777077191 26 dbSNP
rs1465472363 27 dbSNP
rs1007804354 29 dbSNP
rs762272231 31 dbSNP
rs1237271735 36 dbSNP
rs1316480343 37 dbSNP
rs1468425621 40 dbSNP
rs558453627 45 dbSNP
rs1018889330 50 dbSNP
rs1025986686 56 dbSNP
rs965940369 56 dbSNP
rs993389744 56 dbSNP
rs1491353577 57 dbSNP
rs1286829404 58 dbSNP
rs747158665 62 dbSNP
rs781499626 63 dbSNP
rs1014278135 71 dbSNP
rs202171835 73 dbSNP
rs750846474 73 dbSNP
rs984588860 73 dbSNP
rs1394422109 74 dbSNP
rs1281424796 76 dbSNP
rs1020761702 86 dbSNP
rs1264118507 88 dbSNP
rs1451103133 88 dbSNP
rs917386084 88 dbSNP
rs992053906 88 dbSNP
rs571908663 90 dbSNP
rs1000327861 92 dbSNP
rs924623768 93 dbSNP
rs1033173848 94 dbSNP
rs1054587665 97 dbSNP
rs1344831586 98 dbSNP
rs889183329 98 dbSNP
rs1200915023 100 dbSNP
rs1249589239 102 dbSNP
rs1381339629 102 dbSNP
rs140311266 104 dbSNP
rs541904570 116 dbSNP
rs1431383759 119 dbSNP
rs1371175531 125 dbSNP
rs35581951 135 dbSNP
rs540909511 137 dbSNP
rs375597245 138 dbSNP
rs377451833 142 dbSNP
rs529754859 144 dbSNP
rs543378121 145 dbSNP
rs1414817802 151 dbSNP
rs1173691139 154 dbSNP
rs1484772446 157 dbSNP
rs1257421730 163 dbSNP
rs868223821 164 dbSNP
rs1468049866 165 dbSNP
rs188297126 182 dbSNP
rs1227179785 186 dbSNP
rs1396235637 189 dbSNP
rs1040625671 197 dbSNP
rs1321881828 197 dbSNP
rs1230916879 201 dbSNP
rs532179650 203 dbSNP
rs552880960 209 dbSNP
rs1411625120 212 dbSNP
rs993420846 217 dbSNP
rs976458155 218 dbSNP
rs1404540712 220 dbSNP
rs866176812 226 dbSNP
rs369065426 232 dbSNP
rs951728446 236 dbSNP
rs1347427781 239 dbSNP
rs1233884243 243 dbSNP
rs1183022021 249 dbSNP
rs540513909 249 dbSNP
rs1337351321 275 dbSNP
rs1033463080 286 dbSNP
rs566421915 287 dbSNP
rs918301254 292 dbSNP
rs959396554 302 dbSNP
rs991898341 307 dbSNP
rs756534683 313 dbSNP
rs1288377589 315 dbSNP
rs1490098685 320 dbSNP
rs1333843948 323 dbSNP
rs117326202 325 dbSNP
rs971504668 343 dbSNP
rs780775979 349 dbSNP
rs983869689 350 dbSNP
rs909707578 354 dbSNP
rs1328139780 355 dbSNP
rs1460038956 360 dbSNP
rs1394050698 361 dbSNP
rs1159922766 368 dbSNP
rs1200221397 368 dbSNP
rs924866337 372 dbSNP
rs937214899 374 dbSNP
rs1181788985 376 dbSNP
rs936041572 379 dbSNP
rs1056095044 381 dbSNP
rs1192187340 385 dbSNP
rs1460887986 390 dbSNP
rs1268375790 394 dbSNP
rs990544953 412 dbSNP
rs895748108 430 dbSNP
rs138506402 434 dbSNP
rs7207208 438 dbSNP
rs1041724527 440 dbSNP
rs1233937222 442 dbSNP
rs1373144009 446 dbSNP
rs1300916189 448 dbSNP
rs1301454600 454 dbSNP
rs1439907545 467 dbSNP
rs143523946 470 dbSNP
rs1000271520 471 dbSNP
rs1033122852 476 dbSNP
rs1319301529 478 dbSNP
rs1383982641 481 dbSNP
rs1382943176 485 dbSNP
rs1158465623 488 dbSNP
rs943450048 491 dbSNP
rs1397446134 495 dbSNP
rs1392984091 496 dbSNP
rs557070536 508 dbSNP
rs1248247756 518 dbSNP
rs1387482246 520 dbSNP
rs1040446605 522 dbSNP
rs1260389301 524 dbSNP
rs901708206 527 dbSNP
rs1349888451 531 dbSNP
rs1278099677 533 dbSNP
rs561513042 534 dbSNP
rs1047700145 537 dbSNP
rs1294934863 542 dbSNP
rs1270966493 543 dbSNP
rs768103709 559 dbSNP
rs1324938997 563 dbSNP
rs1317666171 565 dbSNP
rs773938425 566 dbSNP
rs1377794872 576 dbSNP
rs1298091459 582 dbSNP
rs1019584859 583 dbSNP
rs894772231 584 dbSNP
rs966327129 585 dbSNP
rs976785928 586 dbSNP
rs1025257119 587 dbSNP
rs1372154977 590 dbSNP
rs529432057 593 dbSNP
rs1486403493 594 dbSNP
rs1255298356 595 dbSNP
rs1210137086 597 dbSNP
rs1483241698 606 dbSNP
rs1274807680 613 dbSNP
rs1337620799 622 dbSNP
rs971578155 644 dbSNP
rs977543813 652 dbSNP
rs983818730 659 dbSNP
rs1233965683 669 dbSNP
rs909655133 672 dbSNP
rs1259025080 678 dbSNP
rs539497760 682 dbSNP
rs1414666887 689 dbSNP
rs1355653273 692 dbSNP
rs1331231226 701 dbSNP
rs529668028 706 dbSNP
rs558421436 714 dbSNP
rs772791031 721 dbSNP
rs572260796 727 dbSNP
rs949996711 729 dbSNP
rs943374449 740 dbSNP
rs1041688017 754 dbSNP
rs1186639916 756 dbSNP
rs1370487131 759 dbSNP
rs1472849558 768 dbSNP
rs1234543789 769 dbSNP
rs1458578572 774 dbSNP
rs1437075742 778 dbSNP
rs565828645 785 dbSNP
rs976201942 785 dbSNP
rs929151988 790 dbSNP
rs903169015 791 dbSNP
rs1374598939 792 dbSNP
rs1281843375 794 dbSNP
rs1335593383 795 dbSNP
rs887593446 798 dbSNP
rs374592337 799 dbSNP
rs1462655582 801 dbSNP
rs936008599 802 dbSNP
rs541174655 803 dbSNP
rs941944558 804 dbSNP
rs190985804 805 dbSNP
rs1469411246 806 dbSNP
rs894838363 818 dbSNP
rs1321071862 820 dbSNP
rs1469947067 824 dbSNP
rs111555958 839 dbSNP
rs574440175 840 dbSNP
rs1013203702 841 dbSNP
rs1317651172 843 dbSNP
rs1286926000 849 dbSNP
rs1024705677 850 dbSNP
rs1381790771 856 dbSNP
rs1304563256 858 dbSNP
rs902261008 859 dbSNP
rs1443581669 871 dbSNP
rs1243577504 872 dbSNP
rs1008106935 873 dbSNP
rs1430795123 874 dbSNP
rs999204180 875 dbSNP
rs183263103 876 dbSNP
rs1321998524 897 dbSNP
rs1399994688 900 dbSNP
rs1395632860 903 dbSNP
rs902044172 907 dbSNP
rs1175214383 908 dbSNP
rs993752514 910 dbSNP
rs1237816310 912 dbSNP
rs1026549111 913 dbSNP
rs1190877150 919 dbSNP
rs1486216115 921 dbSNP
rs1243876703 923 dbSNP
rs1258464382 939 dbSNP
rs563400846 940 dbSNP
rs1005190087 941 dbSNP
rs1249252501 943 dbSNP
rs1236939937 949 dbSNP
rs1016606641 951 dbSNP
rs1182172031 952 dbSNP
rs1214757606 952 dbSNP
rs958487426 952 dbSNP
rs991689558 953 dbSNP
rs917079172 955 dbSNP
rs990839513 957 dbSNP
rs1432603657 967 dbSNP
rs1424640403 970 dbSNP
rs971664122 972 dbSNP
rs532140995 977 dbSNP
rs1158606980 978 dbSNP
rs965094179 989 dbSNP
rs776473654 1000 dbSNP
rs924539319 1001 dbSNP
rs1488042648 1007 dbSNP
rs1458838906 1011 dbSNP
rs545854350 1012 dbSNP
rs1054466373 1018 dbSNP
rs746981056 1028 dbSNP
rs1450326842 1033 dbSNP
rs910586785 1038 dbSNP
rs1308829482 1040 dbSNP
rs1293086327 1045 dbSNP
rs980095516 1052 dbSNP
rs1040888385 1053 dbSNP
rs34023928 1058 dbSNP
rs1295015742 1059 dbSNP
rs909048294 1066 dbSNP
rs901991592 1067 dbSNP
rs1374795933 1069 dbSNP
rs941867046 1070 dbSNP
rs993647014 1071 dbSNP
rs1168664635 1072 dbSNP
rs530455721 1075 dbSNP
rs1477519512 1080 dbSNP
rs560044904 1080 dbSNP
rs949086605 1080 dbSNP
rs1390462848 1081 dbSNP
rs1304342460 1085 dbSNP
rs1330756481 1086 dbSNP
rs888038962 1089 dbSNP
rs1261930874 1090 dbSNP
rs58629675 1099 dbSNP
rs1481860228 1102 dbSNP
rs902165712 1105 dbSNP
rs1202279469 1109 dbSNP
rs1274448951 1111 dbSNP
rs1230935054 1113 dbSNP
rs3214865 1118 dbSNP
rs765046285 1123 dbSNP
rs751664603 1132 dbSNP
rs2305912 1133 dbSNP
rs958652177 1139 dbSNP
rs1483745043 1143 dbSNP
rs1053531547 1145 dbSNP
rs1248759639 1146 dbSNP
rs569929384 1147 dbSNP
rs1473694919 1148 dbSNP
rs1012653454 1164 dbSNP
rs767910475 1165 dbSNP
rs550662330 1169 dbSNP
rs1460006218 1172 dbSNP
rs1018300725 1179 dbSNP
rs531165882 1181 dbSNP
rs924487054 1182 dbSNP
rs997744163 1186 dbSNP
rs1030339187 1187 dbSNP
rs957276174 1188 dbSNP
rs990104930 1195 dbSNP
rs910540124 1196 dbSNP
rs1355109200 1197 dbSNP
rs1296236211 1198 dbSNP
rs1351989966 1202 dbSNP
rs943388106 1204 dbSNP
rs1282119264 1209 dbSNP
rs1308182775 1210 dbSNP
rs550659224 1214 dbSNP
rs1371992493 1215 dbSNP
rs750673229 1219 dbSNP
rs963568304 1220 dbSNP
rs570653751 1224 dbSNP
rs1343050934 1227 dbSNP
rs1159255523 1234 dbSNP
rs1040437880 1244 dbSNP
rs1362585468 1250 dbSNP
rs923364095 1253 dbSNP
rs1455029330 1254 dbSNP
rs539408179 1257 dbSNP
rs1396494559 1261 dbSNP
rs1281274055 1262 dbSNP
rs1191412569 1266 dbSNP
rs1313288301 1267 dbSNP
rs1450714876 1269 dbSNP
rs1206392226 1277 dbSNP
rs1484813040 1281 dbSNP
rs143621320 1282 dbSNP
rs929444034 1282 dbSNP
rs1234729440 1283 dbSNP
rs1349843687 1286 dbSNP
rs1272897098 1289 dbSNP
rs1231290232 1297 dbSNP
rs949324424 1304 dbSNP
rs1318998471 1306 dbSNP
rs756589669 1307 dbSNP
rs1484170663 1315 dbSNP
rs1359183604 1320 dbSNP
rs546592886 1332 dbSNP
rs1298182834 1352 dbSNP
rs887988177 1360 dbSNP
rs1046261458 1369 dbSNP
rs1479462541 1372 dbSNP
rs1192978257 1374 dbSNP
rs1425869794 1381 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 85451.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000293218.3 | 3UTR | ACUUACCAAGCACUUUUUAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
169 hsa-miR-4778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT199338 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT203028 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT260646 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT336468 SRP9 signal recognition particle 9 2 2
MIRT389212 SERTAD2 SERTA domain containing 2 2 2
MIRT441814 TENM1 teneurin transmembrane protein 1 2 2
MIRT444029 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT454171 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT469663 RABEPK Rab9 effector protein with kelch motifs 2 2
MIRT495579 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT498340 PRELID2 PRELI domain containing 2 2 2
MIRT498696 LYRM2 LYR motif containing 2 2 6
MIRT504156 OPN5 opsin 5 2 4
MIRT506321 OTUD4 OTU deubiquitinase 4 2 4
MIRT507608 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT525431 PROX2 prospero homeobox 2 2 2
MIRT526973 PAX7 paired box 7 2 2
MIRT527814 TMEM74B transmembrane protein 74B 2 2
MIRT527960 MTAP methylthioadenosine phosphorylase 2 2
MIRT528083 NOL9 nucleolar protein 9 2 2
MIRT528480 STAMBPL1 STAM binding protein like 1 2 2
MIRT528947 PNMA5 paraneoplastic Ma antigen family member 5 2 2
MIRT530687 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT531733 SLC2A9 solute carrier family 2 member 9 2 2
MIRT532445 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT533331 UNK unkempt family zinc finger 2 2
MIRT534205 SLC38A9 solute carrier family 38 member 9 2 2
MIRT534322 SHISA6 shisa family member 6 2 2
MIRT535197 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT538076 DIAPH2 diaphanous related formin 2 2 2
MIRT539250 ANKRD50 ankyrin repeat domain 50 2 2
MIRT548733 CREBRF CREB3 regulatory factor 2 2
MIRT556406 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT559576 AP1AR adaptor related protein complex 1 associated regulatory protein 2 2
MIRT567661 ERGIC2 ERGIC and golgi 2 2 2
MIRT572750 FAM204A family with sequence similarity 204 member A 2 2
MIRT609355 ZNF664 zinc finger protein 664 2 2
MIRT611194 TMEM105 transmembrane protein 105 2 2
MIRT611545 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT611690 NODAL nodal growth differentiation factor 2 2
MIRT611810 FCRL4 Fc receptor like 4 2 2
MIRT612746 MYOCD myocardin 2 2
MIRT614177 FAM53B family with sequence similarity 53 member B 2 2
MIRT614431 TAZ tafazzin 2 2
MIRT614586 SDC1 syndecan 1 2 2
MIRT615547 TNFSF15 TNF superfamily member 15 2 2
MIRT615872 BRD3 bromodomain containing 3 2 2
MIRT615970 ASCL1 achaete-scute family bHLH transcription factor 1 2 2
MIRT616024 PRRG4 proline rich and Gla domain 4 2 4
MIRT616242 NFIC nuclear factor I C 2 2
MIRT616282 HMGB1 high mobility group box 1 2 2
MIRT616674 PRR15 proline rich 15 2 2
MIRT618302 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT618657 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT618754 SLC38A5 solute carrier family 38 member 5 2 2
MIRT619505 TXLNB taxilin beta 2 2
MIRT619545 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619605 MKKS McKusick-Kaufman syndrome 2 2
MIRT619804 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619923 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620442 SEMA3E semaphorin 3E 2 4
MIRT620730 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625345 TAPBP TAP binding protein 2 2
MIRT627510 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT632584 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636901 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT637873 UTP6 UTP6, small subunit processome component 2 2
MIRT639011 ABI2 abl interactor 2 2 2
MIRT639054 FPR1 formyl peptide receptor 1 2 2
MIRT639085 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639589 RGS5 regulator of G protein signaling 5 2 2
MIRT639718 NPRL3 NPR3 like, GATOR1 complex subunit 2 2
MIRT639904 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640392 ZNF785 zinc finger protein 785 2 2
MIRT640786 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT641290 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641442 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT642426 STAT3 signal transducer and activator of transcription 3 2 2
MIRT642682 KRT74 keratin 74 2 2
MIRT643362 TRIM10 tripartite motif containing 10 2 2
MIRT643982 DUSP28 dual specificity phosphatase 28 2 2
MIRT644466 ZNF747 zinc finger protein 747 2 2
MIRT644561 SPOP speckle type BTB/POZ protein 2 2
MIRT645748 FAM213A family with sequence similarity 213 member A 2 2
MIRT646737 FADS1 fatty acid desaturase 1 2 2
MIRT647446 SIX6 SIX homeobox 6 2 2
MIRT648317 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT649327 POLG DNA polymerase gamma, catalytic subunit 2 2
MIRT649453 WDR70 WD repeat domain 70 2 2
MIRT650066 CCDC134 coiled-coil domain containing 134 2 2
MIRT650156 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT650317 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650429 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT651325 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651843 USP13 ubiquitin specific peptidase 13 2 2
MIRT652532 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT652816 TARDBP TAR DNA binding protein 2 2
MIRT652971 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT653466 SLC5A12 solute carrier family 5 member 12 2 4
MIRT653568 SLC35B3 solute carrier family 35 member B3 2 2
MIRT655678 NUMBL NUMB like, endocytic adaptor protein 2 2
MIRT656785 KPNA4 karyopherin subunit alpha 4 2 2
MIRT656798 KNTC1 kinetochore associated 1 2 2
MIRT656988 KDM5A lysine demethylase 5A 2 2
MIRT657292 HOXB5 homeobox B5 2 2
MIRT657497 HBEGF heparin binding EGF like growth factor 2 4
MIRT658012 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT658146 STXBP2 syntaxin binding protein 2 2 2
MIRT658259 FAXC failed axon connections homolog 2 2
MIRT659051 DGKH diacylglycerol kinase eta 2 2
MIRT659171 DCTN3 dynactin subunit 3 2 2
MIRT659936 CACHD1 cache domain containing 1 2 2
MIRT660079 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT660167 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660292 BICC1 BicC family RNA binding protein 1 2 2
MIRT660317 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT660340 BCAT1 branched chain amino acid transaminase 1 2 2
MIRT660447 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT661634 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662438 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664202 TBCA tubulin folding cofactor A 2 2
MIRT666436 SH2B3 SH2B adaptor protein 3 2 2
MIRT666666 RBM47 RNA binding motif protein 47 2 4
MIRT669253 C4orf36 chromosome 4 open reading frame 36 2 2
MIRT669502 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT693912 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700435 PURB purine rich element binding protein B 2 2
MIRT702857 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708857 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709030 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT709609 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT709810 AR androgen receptor 2 2
MIRT709872 A1CF APOBEC1 complementation factor 2 2
MIRT710208 ENAH ENAH, actin regulator 2 2
MIRT710964 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711173 EMCN endomucin 2 2
MIRT711219 RETSAT retinol saturase 2 2
MIRT711345 FMNL2 formin like 2 2 2
MIRT711441 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT711631 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711823 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT712164 SURF4 surfeit 4 2 2
MIRT712632 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713692 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT714906 CHMP3 charged multivesicular body protein 3 2 2
MIRT715161 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT715430 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT715660 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT715968 FADS3 fatty acid desaturase 3 2 2
MIRT716203 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716234 SRSF12 serine and arginine rich splicing factor 12 2 2
MIRT716251 PALM2 paralemmin 2 2 2
MIRT716375 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT716490 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT716744 APOL6 apolipoprotein L6 2 2
MIRT717624 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT718480 TMEM151A transmembrane protein 151A 2 2
MIRT718805 PRKCB protein kinase C beta 2 2
MIRT719276 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719432 NPTX2 neuronal pentraxin 2 2 2
MIRT721011 ZNF619 zinc finger protein 619 2 2
MIRT721819 HEATR5A HEAT repeat containing 5A 2 2
MIRT721997 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT723143 METTL24 methyltransferase like 24 2 2
MIRT723213 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT723427 MC2R melanocortin 2 receptor 2 2
MIRT723436 ADI1 acireductone dioxygenase 1 2 2
MIRT723542 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT724474 MMD monocyte to macrophage differentiation associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4778-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4778-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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