miRTarBase - #MIRT533512


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pre-miRNA Information
pre-miRNA hsa-mir-452   
Genomic Coordinates chrX: 151959628 - 151959712
Synonyms MIRN452, hsa-mir-452, MIR452
Description Homo sapiens miR-452 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies . The 5' end of the miRNA may be offset with respect to previous annotations.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-452-3p
Sequence 58| CUCAUCUGCAAAGAAGUAAGUG |79
Evidence Experimental
Experiments Array-cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 12 X - 151959644 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs757928550 3 dbSNP
rs1324216965 6 dbSNP
rs1390793899 13 dbSNP
rs899383242 17 dbSNP
rs747858567 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRIM71   
Synonyms LIN-41, LIN41
Description tripartite motif containing 71
Transcript NM_001039111   
Expression
Putative miRNA Targets on TRIM71
3'UTR of TRIM71
(miRNA target sites are highlighted)		 
>TRIM71|NM_001039111|3'UTR
   1 TTGCATTTCCTAGGTTTCTGTGTTTGGGGTGTGTGTGCGTGTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTTT
  81 TTGAATTTCAAAGAAGAAACAGTCTCAGGGAAATTTCTTTTTTCTTTTTTTTTTTTAAAGAGAACAAGAAAAGTACAACA
 161 TTGCTTAAGTCCTACCTCATCTTTATTTTTTTACAGATGAATGTACTTATCTTTTCTGCAGGGATTGAGCCTGTGAAGTG
 241 ATAATTTCTATCTACCTCATAAATCTTTACATTTCCTTCTGCAACAGGCCCTCTTCCCCTCCTCAGTGGAGTTTGCATTT
 321 CCCTCTTCCCCTGCGTGGGGCATGATATGCACAAGCCTGGCATCTGTATGGCTGGGAGGGCACTGGATGTGTGTGGTGGG
 401 GTGTATTCTGTAGATTGAGCCAAGGAAACACAAAAAAAAACTACTAAGTAAAAAAACAAAAAACTATAAAACATGGAAAA
 481 AATAGGATTTGAAATGCATAATTATAGAATACCTGTGTTCTTGAGAATACTGTTTATATGGGGTTTAGATTATGTTGTGT
 561 TGTTTTGATCTTTTTGGAAAATCTTCTCTTTTTAAATGCTGCAACAGAGAAATTTCCTCTGTTCTCTGTTTATACCTCAG
 641 TGTGTTTAACATCCTCTTCTGCATCGTTTCTTGATCTTAGACGTTGTGGCTGTGGCTTGCTAGCCAAGAAAAGCAGACCC
 721 TTCATATTTTAGGGTATATAATCTTTGTTTCTTTTAAGGGAGGGTGTGTGCATGTTTGTTTCAAAGCCATCTTGCACCCA
 801 AGTAGTAAAGCTGAAAATGACACACTGCCTCCCAAAGAACCTCTCCTTTTCACACTTTGGTTTCTTAAAAAAGTATATAG
 881 ATGGTAGCTCAGGATTTTTGATTAAACATATTCTCAAAAGTTATGCTTTCTTATTTTGCTGTTAGGTTATAAAGGGTTAA
 961 ATGGAAGGAAAAAGGAAATTAACCTCGTTCTCAGAGAGAGGGTTTTCAGGCATGGGCTGACGTGGACATGAATGTGGGTG
1041 GACATGCGTGTGCTGAGGGAGTCAGGGAGCACATTAAAGAACAAGGCACCCCCAAACTATAGGAACTCCACAGAAAGGGC
1121 AGGGTCTGCCCTGACCCGCGAGTGCATGTTGTTCTGTAGTGCTAGGGGTTTCTTTTCCTAAGAAGAGTAGGCAAAGGAAA
1201 GAACTTTTATTTTACAAGCACAATTTTTTCCTGCTTTGAAAGTTCAGGGAAATAGAAGGTTTGAAAGTCAAATTAATACC
1281 AACAGCCCAGTCCCACACCCTCTGCTTGGGTCACTTTTTATAGGATTGTTTGCACCCAGGCCATGCTTTAGGACCTCATG
1361 GTTAACATGAATCCCCCCGCCCCCTCTCCCCCCAAGGCCTTTGACCATAAAGGATCTAGAAACCAAATTGTCCCAACCTG
1441 AAATGTAGGATGTAATGTCTTTTCTTAAACCTGTAACTCGGTACCAAAGAATGAAAATTTAAGGCTCCCACTGCAGAACT
1521 GTGGGGTAGAATCTGTGTCACTTTACAGGATTGGTTGGTTGTAAGCTGGACTTGGGTACAAAACTTGTGCTTCTGGGCAT
1601 TGTCTGTCTTTCAAGTGCAAAGCAGATGTAGCTGATACCCTGCTTGTCAGAACCCAGTGGGTTCCTGCAATGCCCCAAAT
1681 ACTGAAATAAGAACCAAATTCTGGAGGAGCCCTCCTCAGGGAAAAGAGGGACTCTCAAACAAACGTCAGTGACTTACAAG
1761 GGAGACCTCTTGTTTAAAGACTTATGGATCAACTTCTGTTCCTCTGTTTAAGAGAAATTTCTATTGCAAAATGGGTATCG
1841 TTTTAAATGAGCAGAACAGATTAACAAATGGAGCAATTTGTTTCTGTTATCCCAATAGAAAAGGAGATGATGGGGACAGT
1921 GTGACAAGTCAATCAAGTTGCTTTTCCCGTACACCTCTTTTGGACGTTTAATTTACTACTACTACAAGCTACTCTGTCTC
2001 TTCCCATTGCTTTAATTCTAGGGTTTCTGAGTGACCAAAATGGGAAGGAAAAAAAAAACCTCATCTCACAGAGGAGAACT
2081 GCATGCAATAAAAGATTCAAAAGTTGGAAAGTAGCTTCAAACTGCTGCTGGCTCCCAGCTGCTGTTACAGGGTGGGAAGG
2161 TGTTAGGAAATGTTGTTTGTTAGAAGCTCCTTTTACTGTAGAATTTAATAGTGAATCCTTCCCCAATGCCTATTCAGTTG
2241 CCTTTTGGCCGTTAAGCTCTAAGTTCTTTGGTAAAGAGTTAATATAATTAAACATTTTTACTGTTTTCTATTTTGGAGTA
2321 ACTTGGTGCTGATCTTCCTTCCCTTTCCCCAGCTGCCCAACAAGCCACCCTTTAAACACCAAAGACAACTGGTTTTAAAT
2401 GCTTGAAAAAAATTTTATTGAGGAGATGGATCTTGATTAAAATCTTTTCATCATCATTTTCATTCTGCTCTTTTCTTTCT
2481 AATTTCCCCAGATGTAGGAAAATTTTGGGACCTGAATGAGAAATGTTCTTGGTGCATAACAGTAACTAGAGCTCCTTATT
2561 TGACATTTTACTATGGATGTGATCGAAAAGCCAAGATTTTCGCTCCATGGCTGAAATTATCAGGTCTTAATTTACAGACT
2641 TGTAAATTTGCAGGCTTAGAGCAACTAGAACTATCCCCTGAAATAGGTGTGTAGGTCAGAGATACTACCTCTTTGTCCTC
2721 AGTGGTGGTATATCTATCTCCTTACCTTTCTGTACCCAAAATGGTGCATGACTGGTATTTGAGAAACATGGTCACATTTG
2801 GAAAGCTTTTGTTTTTAAAACATTGGCGGTTTTTCCTGCCCGTGGTTGACTCCTGACCCATAGGGATTGGTGCGAAGCAC
2881 TTTGGAGAGTGTTTATTGTATGATGTGAAATGTTCTAAATCAAAGAAAGATGATAAAAGCCAACATTTGGCAGTCCCTAG
2961 TGTGAAACTGTGAAAAGTACCTGTGTTTAAATGCATAATCTCCTGCCCGGGTAATGCCAGGTAGCCAGGAGTTGGGTCAA
3041 AGAAGGGAGTCGTCATCCTGATGGAAAAAATAAGGTCCTGGGTATTATGAGGTAGGAGAATAAAAAGGTTTCTGGGGAGT
3121 AAGTATGACAATTACTAGTCCCCATGGAGGTCTGATCTGGTCAGGTGGCAAGGGTTGGGTGGGGTATGATGTAAGCTCAG
3201 TTTATGTGTGGAGATGCCCATTGGGTTTGGATATATAGGTTTGAGTATTGAGATGTTTAAAGGACATCTAACCCATAGGT
3281 AAAAACTACTTTTGCTTGACACTGACTTAACATTTCAAAAGTGTTATTTTTGGTCCCAAGATCTAATGCTGTCTCAGAAC
3361 ATGTGCCCTGTTGTGGCTGCAAGTGGCACTCAAGTTGACTAGAGCACAGTGACCTGGGTTGTACCCCAAGTGCACTAACT
3441 CCTCAATGCCCTTTTAAGTCTAACTTATTTGGGAAACACATAACAAAGGGTACCATAAACCGAATCCAAATTACGTGTTG
3521 GGCCAAAAATGTTGCCAGAACTGAGGCACTTTGTGATGGAGTTGCAAGAGATAGCTTGAGATCGGCTCAGTCTGATTTAT
3601 TCTAGTTAAGCCAAAGCTTAATTATTTGAGGAGGAAAGTCTTTTAGGCTTGAAGCAGCAAAATACTGTTTATATATGTGT
3681 TACCTTCCTCGTTGGAAGATTCTACGATTGCTCTGTTCTGGTAGGTGGTGAAAGATATGCCAAAGTTTTAGGCTTGTTTT
3761 TCTGATCTTATTTTTTTAATCCAGTGGTGCCAAAAAGTATTTAGGGTATGTTTAAGGTATATTTAAAACATCACTCTGAA
3841 TGAGTTTCCAACAGTCTGGGGCTGTATAAAAGTCACACTCTTGTACTTGCAGGTGATGGTGTCACAGGGCCAGGGCCTCC
3921 AGAGCTCTACGGCTTTCTCTGGTTTTCTATAGGGCCAAGGGCACAGGACGCAGCATTCCAGACCACACTGACTGCTTTTG
4001 CTGAGTTTCTACCTCACTTGTGGCAAGTCATCTACCTCATGTTAGCATCTGACAGGTCTCAAAAAGAATAGTATTAATCC
4081 AGTGGGCAGTGGGTGGGAGTGGGAAGCTACCTCTAAAAGAAATGTTACCATAAATCTACAACTGATTTCTCCCAGGAGAA
4161 ATGTTCTACTTACCTTGAAAGAGAAATGTCAGGCAAATGTAGTCATAAATCCAAGTAGTTCTTAGCAATCTGGCTTTTCC
4241 CCCTCAAAAAGAATTATGCATACCATTACTGTTGTTCAGTATTATGAAACTACTGGTTAATCTGACCTATTGGAGGACTT
4321 AACTACAAATAAAGACCTTTAGGTCTCTTTCTCTTCAAGAGAAAAATATTTTATCTGTATTTCGAATGTCTGCAAATAAT
4401 ACCCTTTAGGAGCAATTCTAAAGGTCTAGATCTTGGAAACATCAAATATTTGAAGGGAATGAGAATCCTCTTGACTTCAT
4481 GATTGTATTTGTAGCTCTCTGGACCCGGCAGGACGTTCATCACCATGATGTTGCAACAATCACTGTTTTGACTGAGCAGT
4561 GACTGTTGAAGTGTGTATTGCTCTTTTGTTTTGTTTTTATTTTTTTCTACCAAAGGTAACATGTTGACGGGTTTTTTTTT
4641 TCCTTGTTTATTAAATACTTGATAAAGTTGAGAAGCACATTACCAGGATATACTGTATTGACCCTCCCACCTCTCTTCTG
4721 CCCTAATTTTTGGTTGTTTGGAAGAGAGGAGGGTCCTAAGACCACTGTCATTATCATGAGGGGCTTATAAATGTCATGGT
4801 GAAGAAATACCTCAATGATGTCTATTTTTAAAACTGATCTTACGGGTTAACAAGCCAGCCTGGTGGGATATTTTCCATCA
4881 TCATTTAACCAATAATGGTTCTAAAAGTTTTGTGTATCCACATGGTCTTAGACCTCCTTTTAATGATTGTATTAACTTAC
4961 AAGCTCAGGTAGTATTTTTCTTAAGACTCTATCTCAGAGCACACTGACTGAATGTTGATGTGTGTAGCAAAGTGTTTACT
5041 TTCTTTAAATAACCAGCTCTGTAACTCTGTAAGTTCTTTGTGTTTCTAGCAGTCTGTGTAGTTGTCTTTCTTCAGAGGAA
5121 GATTTTTCACATTTCTGGGGTTTTCTTGCTTTTAGGGTGGTAAGATTCCTTTCTTTTTTTCCCTTTTCTCCTAAAATCGA
5201 TGCAGGTAAGGGTGGGTGGGTAAGGGGTGTTGTTTTTTAACTAGCATGTTAGTTATACTTGGGTGGGTGGGAGGGTTGTT
5281 AAACTGAATCTTGCTTAATACTGTCCATTAGCTCTCATGCCGGGTCAGCAAAATGCTTTAATTTTTAACTGCAGAACATG
5361 TGACTCGGTTGAGTCTTTTTGTCTTTTTTTTTTTTAAATAAACAATTGGGGGAATTAATGTGGGCAAGTTGCCTTATGTT
5441 AGAATGACTAAGTTAAACCTCTTAATTTGTATTTGTCCAAGGCAGACATGATATAAGGAATATGCACTACCGTAGTAACT
5521 CCCCTGGCCGCAGAAACCACACTGCAAGCCTGTCCGGGGTGGGGTGCTGACTGCCATTTGCCACTTTTAAATGGGCACTG
5601 CCGTGGTAATGTGAATCCCATCAATGCAGTAGATGGGTGGGGAAATGAAGATTTCCCCCCAAACCTTTAGGCAAAAGTGA
5681 GTTTTTGTTTGGTTGATTTTGGGTTTTTTTCCCCCCTCCTCTTTTGGCTTTCACATTTTAAATCTTAAATGTTACTATTG
5761 CAGGCCGCAGGCATGACAGGCAATGAGCAGGTGAAGAACCAATGGAAAAGTGTTCAAAAACTCCTGTGTTAGCTAACAGG
5841 CTTCTGAATGTATCACTGTGGTCCACAGAGAAGGCTGGAGGAGGTAGCAAGGAGATGCTGTATCAGCTACTACAGCCTTA
5921 AAACAAAGTTGGTGTCTCTTTGGACTTTAAAATTGTTCCTATGCAGCTTATTTTATTTTTGTTTAATCAAATAAACGAGG
6001 GTTTTTCCATGGCTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guGAAUGAAGAAACGUCUACUc 5'
            :|||:||:||| ||||||| 
Target 5' tcTTTATTTTTTTACAGATGAa 3'
 180 - 201 180.00 -15.00
2 
miRNA  3' gugaauGAAGA--AACGUCUACUc 5'
                ||| |  ||||||:||| 
Target 5' cacactCTTGTACTTGCAGGTGAt 3'
 3874 - 3897 146.00 -16.10
3 
miRNA  3' guGAAUGAAGAAA--CGUCUACuc 5'
            ||| ||  |||   ||||||  
Target 5' ttCTTTCTAATTTCCCCAGATGta 3'
 2473 - 2496 138.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30465882 10 COSMIC
COSN30491375 15 COSMIC
COSN31564108 48 COSMIC
COSN7606196 58 COSMIC
COSN19731227 60 COSMIC
COSN20098271 63 COSMIC
COSN30743077 64 COSMIC
COSN15665517 71 COSMIC
COSN31482940 74 COSMIC
COSN31486263 74 COSMIC
COSN32051917 79 COSMIC
COSN30096529 90 COSMIC
COSN30178538 102 COSMIC
COSN30482256 103 COSMIC
COSN17626346 132 COSMIC
COSN9548364 136 COSMIC
COSN15663073 137 COSMIC
COSN27376509 137 COSMIC
COSN20074892 138 COSMIC
COSN1276042 155 COSMIC
COSN26671109 218 COSMIC
COSN1276043 341 COSMIC
COSN30170669 428 COSMIC
COSN28481980 441 COSMIC
COSN29735297 441 COSMIC
COSN22006979 475 COSMIC
COSN6765975 490 COSMIC
COSN29276947 519 COSMIC
COSN15805053 561 COSMIC
COSN20886151 865 COSMIC
COSN1276044 1290 COSMIC
COSN1276045 1299 COSMIC
COSN1276046 1357 COSMIC
COSN27387748 2059 COSMIC
COSN5043820 2183 COSMIC
COSN18851347 2344 COSMIC
COSN6765976 2606 COSMIC
COSN6765977 3388 COSMIC
COSN29851630 3419 COSMIC
COSN6574136 3510 COSMIC
COSN7761120 3528 COSMIC
COSN5534835 3546 COSMIC
COSN19581808 3663 COSMIC
COSN29100477 3798 COSMIC
COSN15301947 3978 COSMIC
COSN20200502 4796 COSMIC
COSN24965536 5018 COSMIC
COSN27354879 5396 COSMIC
COSN16750115 5450 COSMIC
COSN23356056 5711 COSMIC
COSN1946670 5726 COSMIC
COSN21984201 5769 COSMIC
COSN7606197 5773 COSMIC
COSN1946671 5847 COSMIC
rs62253764 2213 GWAS
rs4909017 4294 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1266332522 4 dbSNP
rs1453537960 6 dbSNP
rs1468650243 9 dbSNP
rs1195055095 10 dbSNP
rs200179522 11 dbSNP
rs1488806895 15 dbSNP
rs1178476282 16 dbSNP
rs1030179726 25 dbSNP
rs890254212 28 dbSNP
rs1168646669 29 dbSNP
rs181759059 30 dbSNP
rs1463974405 31 dbSNP
rs1274950306 32 dbSNP
rs1161833572 35 dbSNP
rs1390751907 36 dbSNP
rs1007646180 37 dbSNP
rs755127392 38 dbSNP
rs767758015 39 dbSNP
rs781111337 39 dbSNP
rs752810578 40 dbSNP
rs753021649 40 dbSNP
rs756290129 41 dbSNP
rs10630076 42 dbSNP
rs1179337977 42 dbSNP
rs1491253907 42 dbSNP
rs369336377 42 dbSNP
rs750754446 42 dbSNP
rs147662249 43 dbSNP
rs1031907431 44 dbSNP
rs749979918 46 dbSNP
rs1251971853 48 dbSNP
rs1363259045 48 dbSNP
rs1434537478 50 dbSNP
rs10685549 52 dbSNP
rs746474198 53 dbSNP
rs1264115467 55 dbSNP
rs1209700012 56 dbSNP
rs1482072972 56 dbSNP
rs1431264381 57 dbSNP
rs1230821845 58 dbSNP
rs1351165242 58 dbSNP
rs372794141 58 dbSNP
rs533646641 58 dbSNP
rs868280979 58 dbSNP
rs1192746846 59 dbSNP
rs1395651891 60 dbSNP
rs56013846 60 dbSNP
rs1455484232 61 dbSNP
rs1491540332 62 dbSNP
rs59819395 63 dbSNP
rs62253761 64 dbSNP
rs1156832750 66 dbSNP
rs62253762 66 dbSNP
rs1004460853 68 dbSNP
rs200667818 68 dbSNP
rs796689314 68 dbSNP
rs1182123100 70 dbSNP
rs1491566637 70 dbSNP
rs56098528 70 dbSNP
rs893846289 70 dbSNP
rs1266687993 74 dbSNP
rs1011311561 76 dbSNP
rs1211124098 76 dbSNP
rs774583351 76 dbSNP
rs577739040 80 dbSNP
rs1242734709 81 dbSNP
rs1388106023 82 dbSNP
rs956308579 101 dbSNP
rs1325601513 107 dbSNP
rs767494078 114 dbSNP
rs1364181628 115 dbSNP
rs1237068188 118 dbSNP
rs546753480 120 dbSNP
rs905254250 120 dbSNP
rs747042391 123 dbSNP
rs1316479281 124 dbSNP
rs1165019171 125 dbSNP
rs1369743189 125 dbSNP
rs1427623718 125 dbSNP
rs373753231 125 dbSNP
rs1246505575 126 dbSNP
rs1190928441 128 dbSNP
rs1465708198 128 dbSNP
rs1252955986 130 dbSNP
rs184505834 133 dbSNP
rs563926403 137 dbSNP
rs1239818666 138 dbSNP
rs1003392487 152 dbSNP
rs1487607422 154 dbSNP
rs1034783667 158 dbSNP
rs1295066423 160 dbSNP
rs1365706425 164 dbSNP
rs1322783427 165 dbSNP
rs1385063882 176 dbSNP
rs1212846579 177 dbSNP
rs1392251384 182 dbSNP
rs1428642975 186 dbSNP
rs951300671 186 dbSNP
rs867161036 195 dbSNP
rs1377474085 206 dbSNP
rs188913884 206 dbSNP
rs962432602 211 dbSNP
rs1453905958 244 dbSNP
rs975466120 252 dbSNP
rs1482171905 253 dbSNP
rs1176775239 256 dbSNP
rs1407124387 259 dbSNP
rs1274097371 267 dbSNP
rs921040756 277 dbSNP
rs1332776094 281 dbSNP
rs1323592163 282 dbSNP
rs1408723551 288 dbSNP
rs948859673 292 dbSNP
rs1160593412 300 dbSNP
rs980584050 305 dbSNP
rs770928557 307 dbSNP
rs781713594 316 dbSNP
rs933705549 318 dbSNP
rs941702264 324 dbSNP
rs1171198499 328 dbSNP
rs912104747 329 dbSNP
rs1378748088 334 dbSNP
rs550047775 336 dbSNP
rs1254143587 340 dbSNP
rs1206131526 353 dbSNP
rs746439197 357 dbSNP
rs1198540166 361 dbSNP
rs561838556 365 dbSNP
rs1395749030 367 dbSNP
rs182143152 373 dbSNP
rs897468228 390 dbSNP
rs1348076251 394 dbSNP
rs1289755821 395 dbSNP
rs1358239632 399 dbSNP
rs894044959 404 dbSNP
rs187262169 415 dbSNP
rs1373212101 426 dbSNP
rs929249513 428 dbSNP
rs1392055392 430 dbSNP
rs1045446044 432 dbSNP
rs1235978720 432 dbSNP
rs201462435 432 dbSNP
rs74387428 432 dbSNP
rs77419892 433 dbSNP
rs565697233 434 dbSNP
rs1320161818 441 dbSNP
rs890335446 441 dbSNP
rs1443907439 446 dbSNP
rs905285962 450 dbSNP
rs1208028836 458 dbSNP
rs1269422341 458 dbSNP
rs539524794 462 dbSNP
rs1228502351 465 dbSNP
rs867483003 466 dbSNP
rs1232964621 467 dbSNP
rs1377855978 472 dbSNP
rs1007797711 474 dbSNP
rs1282037049 477 dbSNP
rs1274039725 480 dbSNP
rs190844180 487 dbSNP
rs904597270 490 dbSNP
rs570256237 508 dbSNP
rs1433454319 510 dbSNP
rs1391501306 518 dbSNP
rs1000213268 521 dbSNP
rs1404808816 526 dbSNP
rs1232256957 539 dbSNP
rs1480895917 542 dbSNP
rs1165212235 543 dbSNP
rs1178435873 547 dbSNP
rs1243459916 548 dbSNP
rs1187716566 549 dbSNP
rs1253390665 558 dbSNP
rs1035063338 559 dbSNP
rs1474585921 560 dbSNP
rs1165276070 563 dbSNP
rs1287212083 566 dbSNP
rs1031645542 568 dbSNP
rs886973951 578 dbSNP
rs1003987714 582 dbSNP
rs1433392366 585 dbSNP
rs1367848040 587 dbSNP
rs1321784053 602 dbSNP
rs1348204947 606 dbSNP
rs770110132 606 dbSNP
rs1325617134 609 dbSNP
rs1406113916 610 dbSNP
rs775878659 616 dbSNP
rs1166988314 622 dbSNP
rs962923782 625 dbSNP
rs993095502 627 dbSNP
rs1024974100 632 dbSNP
rs975117937 633 dbSNP
rs763326137 637 dbSNP
rs1273429425 645 dbSNP
rs1300407303 657 dbSNP
rs1225786858 666 dbSNP
rs1344741768 667 dbSNP
rs1296832000 669 dbSNP
rs980662848 671 dbSNP
rs1219091611 674 dbSNP
rs1353719257 684 dbSNP
rs771669645 697 dbSNP
rs1017611539 700 dbSNP
rs910029956 703 dbSNP
rs1028371787 705 dbSNP
rs1370080145 707 dbSNP
rs955066160 708 dbSNP
rs963139336 712 dbSNP
rs1431929220 725 dbSNP
rs962870952 732 dbSNP
rs973117041 735 dbSNP
rs146725867 737 dbSNP
rs988287842 742 dbSNP
rs1423011502 752 dbSNP
rs180828541 764 dbSNP
rs1480466706 767 dbSNP
rs1250504599 773 dbSNP
rs1271940353 778 dbSNP
rs1051721447 779 dbSNP
rs772748363 785 dbSNP
rs943241811 787 dbSNP
rs1038861316 788 dbSNP
rs1206610083 797 dbSNP
rs1310848680 800 dbSNP
rs905229560 806 dbSNP
rs904336688 815 dbSNP
rs1485079892 818 dbSNP
rs1349940799 823 dbSNP
rs574265059 824 dbSNP
rs1286537455 829 dbSNP
rs1000244178 834 dbSNP
rs1053092342 837 dbSNP
rs571297686 838 dbSNP
rs1056499540 841 dbSNP
rs1298493334 843 dbSNP
rs1014661955 856 dbSNP
rs534990866 859 dbSNP
rs1357266444 867 dbSNP
rs148865454 871 dbSNP
rs1470302141 872 dbSNP
rs577653048 876 dbSNP
rs970735835 882 dbSNP
rs1001759745 883 dbSNP
rs754767736 889 dbSNP
rs545093218 894 dbSNP
rs142704775 900 dbSNP
rs1179414038 907 dbSNP
rs151002435 909 dbSNP
rs973189077 916 dbSNP
rs919002465 918 dbSNP
rs1180971284 925 dbSNP
rs1482472133 942 dbSNP
rs866546587 954 dbSNP
rs543262116 955 dbSNP
rs1185160449 964 dbSNP
rs1419325539 971 dbSNP
rs898418863 981 dbSNP
rs1429481492 985 dbSNP
rs1266264595 987 dbSNP
rs1230337899 993 dbSNP
rs1317636535 993 dbSNP
rs997126652 993 dbSNP
rs1173217884 994 dbSNP
rs1394569573 996 dbSNP
rs1376695489 1009 dbSNP
rs1338462536 1018 dbSNP
rs1028233902 1022 dbSNP
rs950443004 1023 dbSNP
rs1313517701 1040 dbSNP
rs1377507348 1045 dbSNP
rs1428821586 1046 dbSNP
rs1007879888 1049 dbSNP
rs1421689040 1050 dbSNP
rs533762232 1065 dbSNP
rs1184615737 1066 dbSNP
rs1464808638 1067 dbSNP
rs1216072835 1071 dbSNP
rs1246694519 1073 dbSNP
rs1211178075 1091 dbSNP
rs759589043 1098 dbSNP
rs1301217418 1099 dbSNP
rs1265006988 1100 dbSNP
rs1031443768 1108 dbSNP
rs955748319 1111 dbSNP
rs988318642 1114 dbSNP
rs1246483397 1116 dbSNP
rs1364247909 1117 dbSNP
rs1318442036 1124 dbSNP
rs1383916206 1127 dbSNP
rs1384962629 1132 dbSNP
rs943293136 1138 dbSNP
rs1281775132 1139 dbSNP
rs915357353 1140 dbSNP
rs968239392 1141 dbSNP
rs981462738 1149 dbSNP
rs529153137 1152 dbSNP
rs1388770620 1157 dbSNP
rs575908199 1158 dbSNP
rs1448087667 1168 dbSNP
rs926880254 1172 dbSNP
rs1208160641 1173 dbSNP
rs1489568306 1180 dbSNP
rs1292740279 1187 dbSNP
rs925791132 1188 dbSNP
rs9880804 1189 dbSNP
rs140870926 1192 dbSNP
rs77673849 1197 dbSNP
rs551446948 1201 dbSNP
rs891860807 1202 dbSNP
rs1014278424 1206 dbSNP
rs1046162711 1208 dbSNP
rs558927635 1212 dbSNP
rs905831819 1216 dbSNP
rs1366949233 1219 dbSNP
rs1001792238 1220 dbSNP
rs1393841286 1221 dbSNP
rs1428782815 1224 dbSNP
rs569774295 1224 dbSNP
rs1369030192 1232 dbSNP
rs1017197380 1239 dbSNP
rs1038208029 1242 dbSNP
rs962906222 1246 dbSNP
rs1476001073 1254 dbSNP
rs1377592014 1256 dbSNP
rs1197426717 1262 dbSNP
rs1293370296 1270 dbSNP
rs898357807 1276 dbSNP
rs866387336 1280 dbSNP
rs1454170125 1295 dbSNP
rs1050131940 1298 dbSNP
rs1272150059 1300 dbSNP
rs1197368344 1303 dbSNP
rs1339876752 1322 dbSNP
rs531097214 1325 dbSNP
rs1255318277 1329 dbSNP
rs1397029217 1336 dbSNP
rs891025624 1344 dbSNP
rs1026088605 1351 dbSNP
rs758300122 1355 dbSNP
rs987208041 1356 dbSNP
rs549335144 1358 dbSNP
rs1019033010 1367 dbSNP
rs578114078 1368 dbSNP
rs373869941 1379 dbSNP
rs1323596376 1380 dbSNP
rs964370202 1384 dbSNP
rs1370159272 1385 dbSNP
rs1235006184 1386 dbSNP
rs1233430083 1388 dbSNP
rs371916289 1388 dbSNP
rs536111483 1388 dbSNP
rs1202511129 1389 dbSNP
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rs992128010 1467 dbSNP
rs1158013425 1470 dbSNP
rs1409024326 1472 dbSNP
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rs117437137 1480 dbSNP
rs575350352 1481 dbSNP
rs1163040915 1486 dbSNP
rs543134564 1488 dbSNP
rs560386614 1492 dbSNP
rs898731802 1505 dbSNP
rs573911077 1512 dbSNP
rs974592018 1513 dbSNP
rs920006546 1523 dbSNP
rs1444771356 1530 dbSNP
rs994398897 1535 dbSNP
rs555255946 1541 dbSNP
rs1026244971 1542 dbSNP
rs1049552739 1543 dbSNP
rs770234908 1545 dbSNP
rs943900283 1548 dbSNP
rs891259431 1554 dbSNP
rs1053023556 1559 dbSNP
rs1384053252 1560 dbSNP
rs1320458617 1562 dbSNP
rs1433612180 1565 dbSNP
rs1009065613 1584 dbSNP
rs1279567313 1590 dbSNP
rs1404938950 1596 dbSNP
rs1411939726 1597 dbSNP
rs1352414801 1600 dbSNP
rs1446208041 1601 dbSNP
rs780566711 1606 dbSNP
rs1385700926 1615 dbSNP
rs1187852061 1619 dbSNP
rs1474391401 1621 dbSNP
rs1243290697 1623 dbSNP
rs749583612 1626 dbSNP
rs1450576629 1627 dbSNP
rs1018694205 1631 dbSNP
rs772622958 1633 dbSNP
rs1334657121 1637 dbSNP
rs1021813503 1641 dbSNP
rs1214681673 1649 dbSNP
rs1360610903 1649 dbSNP
rs905586866 1650 dbSNP
rs1297325850 1655 dbSNP
rs868469585 1656 dbSNP
rs964378216 1671 dbSNP
rs141279234 1672 dbSNP
rs1002796994 1673 dbSNP
rs1033818041 1676 dbSNP
rs540964491 1684 dbSNP
rs368564609 1689 dbSNP
rs960946676 1689 dbSNP
rs116764587 1690 dbSNP
rs183025064 1692 dbSNP
rs1233468618 1711 dbSNP
rs772908262 1712 dbSNP
rs1032912910 1713 dbSNP
rs1421530423 1719 dbSNP
rs957300697 1729 dbSNP
rs1187085216 1730 dbSNP
rs761067573 1732 dbSNP
rs961382519 1732 dbSNP
rs974079563 1736 dbSNP
rs562608109 1737 dbSNP
rs920018643 1741 dbSNP
rs185895448 1745 dbSNP
rs949914150 1746 dbSNP
rs1461791778 1750 dbSNP
rs1343717230 1758 dbSNP
rs1166778005 1767 dbSNP
rs1405722142 1782 dbSNP
rs932719758 1786 dbSNP
rs1306445579 1787 dbSNP
rs981969545 1792 dbSNP
rs985701934 1794 dbSNP
rs912442136 1796 dbSNP
rs943846641 1799 dbSNP
rs1413843274 1800 dbSNP
rs1426516401 1802 dbSNP
rs1480537422 1802 dbSNP
rs865984924 1810 dbSNP
rs1175171134 1819 dbSNP
rs754163561 1820 dbSNP
rs1481817426 1823 dbSNP
rs13433809 1824 dbSNP
rs1038398479 1827 dbSNP
rs898470953 1829 dbSNP
rs1265036103 1832 dbSNP
rs930218920 1835 dbSNP
rs1047270021 1836 dbSNP
rs891328273 1837 dbSNP
rs1008387500 1840 dbSNP
rs1001252322 1841 dbSNP
rs73049089 1853 dbSNP
rs896692172 1855 dbSNP
rs1451766115 1859 dbSNP
rs1403858653 1877 dbSNP
rs549098576 1880 dbSNP
rs900240737 1881 dbSNP
rs776332067 1885 dbSNP
rs1013689049 1891 dbSNP
rs995856658 1895 dbSNP
rs564909255 1896 dbSNP
rs567752894 1897 dbSNP
rs956998273 1898 dbSNP
rs1274290796 1906 dbSNP
rs78970243 1909 dbSNP
rs1181668263 1911 dbSNP
rs974489080 1915 dbSNP
rs1208763007 1929 dbSNP
rs546843544 1929 dbSNP
rs1257117780 1933 dbSNP
rs1020194625 1935 dbSNP
rs954184004 1942 dbSNP
rs190308553 1949 dbSNP
rs775581396 1950 dbSNP
rs927090007 1953 dbSNP
rs80283882 1955 dbSNP
rs958791088 1955 dbSNP
rs1168462298 1958 dbSNP
rs965228624 1961 dbSNP
rs1453375043 1962 dbSNP
rs988618097 1964 dbSNP
rs1286630665 1966 dbSNP
rs1432352203 1967 dbSNP
rs913163823 1971 dbSNP
rs1311697023 1974 dbSNP
rs1375679630 1978 dbSNP
rs1345380778 1979 dbSNP
rs538615698 1986 dbSNP
rs1292978279 1988 dbSNP
rs1325093161 1993 dbSNP
rs1184675529 1995 dbSNP
rs763860182 1999 dbSNP
rs927017474 2002 dbSNP
rs1486258608 2006 dbSNP
rs751773185 2019 dbSNP
rs1047796737 2031 dbSNP
rs1232187424 2045 dbSNP
rs1056832919 2047 dbSNP
rs1486033271 2048 dbSNP
rs1037128059 2049 dbSNP
rs1246554773 2049 dbSNP
rs756848912 2049 dbSNP
rs895546745 2049 dbSNP
rs1202468666 2050 dbSNP
rs995814336 2053 dbSNP
rs912798213 2056 dbSNP
rs1367782853 2058 dbSNP
rs1422363985 2058 dbSNP
rs1164634593 2059 dbSNP
rs868327021 2059 dbSNP
rs1039889999 2060 dbSNP
rs368445132 2061 dbSNP
rs1391983624 2063 dbSNP
rs995887452 2066 dbSNP
rs1019726911 2068 dbSNP
rs965423001 2071 dbSNP
rs767798164 2074 dbSNP
rs1395217661 2083 dbSNP
rs779606163 2087 dbSNP
rs1222997293 2095 dbSNP
rs1338555972 2099 dbSNP
rs1249491513 2101 dbSNP
rs1467105661 2106 dbSNP
rs1054132142 2131 dbSNP
rs988649189 2133 dbSNP
rs913024910 2135 dbSNP
rs892840488 2141 dbSNP
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rs1170080855 2180 dbSNP
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rs1481521580 2210 dbSNP
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rs1406536282 4834 dbSNP
rs1394667503 4836 dbSNP
rs1169498126 4840 dbSNP
rs974574867 4842 dbSNP
rs1056493148 4844 dbSNP
rs144992102 4845 dbSNP
rs978065193 4847 dbSNP
rs1269973878 4849 dbSNP
rs1201734871 4863 dbSNP
rs923838468 4876 dbSNP
rs936370038 4882 dbSNP
rs533550471 4888 dbSNP
rs558195507 4890 dbSNP
rs183987684 4894 dbSNP
rs189163053 4896 dbSNP
rs948290244 4898 dbSNP
rs1267521434 4900 dbSNP
rs1273994995 4904 dbSNP
rs1049340400 4909 dbSNP
rs751095903 4912 dbSNP
rs1438594829 4913 dbSNP
rs1371063582 4915 dbSNP
rs1330044323 4921 dbSNP
rs1443966709 4931 dbSNP
rs1410708189 4932 dbSNP
rs1401952993 4935 dbSNP
rs1170716373 4943 dbSNP
rs887979055 4946 dbSNP
rs148701419 4958 dbSNP
rs755778670 4961 dbSNP
rs1455117676 4971 dbSNP
rs1238130405 4987 dbSNP
rs1176799382 4988 dbSNP
rs1459151582 4989 dbSNP
rs1233596324 4990 dbSNP
rs896919826 4994 dbSNP
rs997859591 4996 dbSNP
rs886660741 5003 dbSNP
rs1348441744 5009 dbSNP
rs1308465368 5010 dbSNP
rs1443850641 5023 dbSNP
rs1006227917 5028 dbSNP
rs779880169 5030 dbSNP
rs1293452012 5032 dbSNP
rs1446901938 5034 dbSNP
rs1016231500 5036 dbSNP
rs1336509819 5040 dbSNP
rs1391592248 5040 dbSNP
rs1435750623 5043 dbSNP
rs1157385771 5048 dbSNP
rs1388566983 5055 dbSNP
rs1305156500 5057 dbSNP
rs1181472548 5058 dbSNP
rs900499284 5060 dbSNP
rs1239456288 5062 dbSNP
rs193042369 5066 dbSNP
rs574975936 5068 dbSNP
rs754806417 5068 dbSNP
rs1237947185 5069 dbSNP
rs1285216184 5069 dbSNP
rs1318179572 5070 dbSNP
rs1307139289 5072 dbSNP
rs1227277473 5077 dbSNP
rs1376453379 5086 dbSNP
rs1228784733 5093 dbSNP
rs1415705401 5103 dbSNP
rs1360362905 5104 dbSNP
rs1296871163 5105 dbSNP
rs1422113882 5107 dbSNP
rs542506856 5111 dbSNP
rs560770544 5114 dbSNP
rs1164122236 5129 dbSNP
rs185693072 5135 dbSNP
rs1416148414 5138 dbSNP
rs1030409776 5140 dbSNP
rs1332393482 5142 dbSNP
rs74895132 5147 dbSNP
rs1214326505 5158 dbSNP
rs1006800981 5166 dbSNP
rs60309148 5166 dbSNP
rs72097480 5166 dbSNP
rs756670570 5166 dbSNP
rs200184999 5169 dbSNP
rs112792921 5170 dbSNP
rs1319405174 5171 dbSNP
rs1030932418 5174 dbSNP
rs111629107 5174 dbSNP
rs1233584498 5180 dbSNP
rs1022203564 5182 dbSNP
rs1489188653 5189 dbSNP
rs958161751 5194 dbSNP
rs878954667 5197 dbSNP
rs1276741372 5198 dbSNP
rs564545792 5200 dbSNP
rs923741709 5204 dbSNP
rs531820526 5207 dbSNP
rs1293466905 5208 dbSNP
rs1456452242 5211 dbSNP
rs550042497 5212 dbSNP
rs71630553 5224 dbSNP
rs947710802 5226 dbSNP
rs981850223 5228 dbSNP
rs992204801 5230 dbSNP
rs927693454 5231 dbSNP
rs1422401217 5233 dbSNP
rs938874467 5233 dbSNP
rs1164746506 5248 dbSNP
rs1262258890 5248 dbSNP
rs1190608632 5256 dbSNP
rs6769816 5258 dbSNP
rs1487209278 5260 dbSNP
rs1369498997 5262 dbSNP
rs1213896046 5264 dbSNP
rs1408420947 5265 dbSNP
rs1051216004 5269 dbSNP
rs71630554 5269 dbSNP
rs1255782534 5272 dbSNP
rs887073755 5273 dbSNP
rs1301172034 5277 dbSNP
rs1385643062 5283 dbSNP
rs1410729125 5288 dbSNP
rs1048326027 5290 dbSNP
rs916625871 5290 dbSNP
rs886694502 5301 dbSNP
rs1376769420 5311 dbSNP
rs948029776 5313 dbSNP
rs569027790 5322 dbSNP
rs1398303339 5323 dbSNP
rs1227481679 5325 dbSNP
rs1373487604 5335 dbSNP
rs529850106 5337 dbSNP
rs1452545560 5343 dbSNP
rs1254849463 5348 dbSNP
rs1049372397 5355 dbSNP
rs942313344 5358 dbSNP
rs1037947656 5361 dbSNP
rs900535366 5363 dbSNP
rs1323365673 5367 dbSNP
rs1255815991 5368 dbSNP
rs1231573393 5376 dbSNP
rs996162604 5376 dbSNP
rs1273364829 5377 dbSNP
rs1304833580 5382 dbSNP
rs1288395000 5384 dbSNP
rs1331113712 5384 dbSNP
rs1392229914 5384 dbSNP
rs78809978 5384 dbSNP
rs1396901503 5387 dbSNP
rs768223609 5390 dbSNP
rs909449698 5396 dbSNP
rs1254926919 5397 dbSNP
rs1482492640 5398 dbSNP
rs1181596606 5399 dbSNP
rs890509493 5400 dbSNP
rs999375341 5400 dbSNP
rs940914843 5406 dbSNP
rs1031214106 5408 dbSNP
rs1426012421 5411 dbSNP
rs548422365 5416 dbSNP
rs1167247621 5424 dbSNP
rs1389701374 5426 dbSNP
rs1036544178 5434 dbSNP
rs62253766 5438 dbSNP
rs1486862541 5443 dbSNP
rs1023488656 5444 dbSNP
rs997891971 5453 dbSNP
rs1357604743 5454 dbSNP
rs981713058 5473 dbSNP
rs927742020 5476 dbSNP
rs34098295 5477 dbSNP
rs929673852 5478 dbSNP
rs1340044237 5479 dbSNP
rs1447022337 5489 dbSNP
rs982547685 5494 dbSNP
rs1381058535 5496 dbSNP
rs1313388909 5499 dbSNP
rs1050799167 5504 dbSNP
rs1432897894 5506 dbSNP
rs889483055 5510 dbSNP
rs1006498602 5512 dbSNP
rs1470215119 5513 dbSNP
rs1229907794 5518 dbSNP
rs1367467252 5520 dbSNP
rs1185432383 5521 dbSNP
rs1277783214 5530 dbSNP
rs1022656291 5531 dbSNP
rs1445735468 5542 dbSNP
rs1286979865 5543 dbSNP
rs1209870309 5544 dbSNP
rs1355735310 5553 dbSNP
rs1263890020 5554 dbSNP
rs968007144 5555 dbSNP
rs1257013795 5556 dbSNP
rs756026643 5556 dbSNP
rs1037983683 5557 dbSNP
rs80137984 5560 dbSNP
rs1400782301 5569 dbSNP
rs1389455869 5573 dbSNP
rs1187280963 5584 dbSNP
rs931984311 5588 dbSNP
rs1418159998 5597 dbSNP
rs1030837358 5600 dbSNP
rs1474638605 5601 dbSNP
rs1051733549 5603 dbSNP
rs960529409 5604 dbSNP
rs1423344445 5616 dbSNP
rs748186392 5617 dbSNP
rs992279955 5625 dbSNP
rs369764230 5632 dbSNP
rs1257682849 5643 dbSNP
rs1217723579 5647 dbSNP
rs1000058473 5649 dbSNP
rs1271841022 5652 dbSNP
rs1431448870 5655 dbSNP
rs1329968763 5656 dbSNP
rs1323258782 5659 dbSNP
rs1023714020 5661 dbSNP
rs1052522720 5663 dbSNP
rs113608524 5664 dbSNP
rs771825327 5665 dbSNP
rs1169522019 5666 dbSNP
rs893653998 5666 dbSNP
rs1010670937 5670 dbSNP
rs969403094 5672 dbSNP
rs1455421054 5687 dbSNP
rs1319828976 5689 dbSNP
rs1168969154 5697 dbSNP
rs1023519809 5701 dbSNP
rs1195520265 5704 dbSNP
rs1202770011 5704 dbSNP
rs558107629 5704 dbSNP
rs578115483 5704 dbSNP
rs79311224 5704 dbSNP
rs1365785306 5705 dbSNP
rs984826134 5709 dbSNP
rs869274436 5710 dbSNP
rs1491375153 5711 dbSNP
rs200060604 5711 dbSNP
rs909175458 5711 dbSNP
rs951070496 5711 dbSNP
rs1371179582 5713 dbSNP
rs909616590 5715 dbSNP
rs1439623885 5719 dbSNP
rs940958475 5722 dbSNP
rs1355950900 5723 dbSNP
rs1272514064 5725 dbSNP
rs1414275157 5728 dbSNP
rs963559624 5735 dbSNP
rs973540771 5736 dbSNP
rs1454757091 5738 dbSNP
rs922189353 5742 dbSNP
rs1175666941 5744 dbSNP
rs1471256226 5750 dbSNP
rs570146845 5751 dbSNP
rs923480066 5752 dbSNP
rs1485223887 5754 dbSNP
rs1219515081 5758 dbSNP
rs536762234 5768 dbSNP
rs147772505 5781 dbSNP
rs760486095 5782 dbSNP
rs1305624383 5784 dbSNP
rs1221599828 5786 dbSNP
rs1207174111 5790 dbSNP
rs935333908 5791 dbSNP
rs1374091690 5800 dbSNP
rs190546965 5804 dbSNP
rs1435924723 5810 dbSNP
rs1465700472 5812 dbSNP
rs889513594 5817 dbSNP
rs779250783 5818 dbSNP
rs1211114844 5824 dbSNP
rs1181562557 5827 dbSNP
rs1408901760 5827 dbSNP
rs542067385 5828 dbSNP
rs903478251 5834 dbSNP
rs893860675 5841 dbSNP
rs771101741 5853 dbSNP
rs999488180 5859 dbSNP
rs776918360 5860 dbSNP
rs759477775 5861 dbSNP
rs1284506934 5865 dbSNP
rs1232356566 5871 dbSNP
rs1003447480 5872 dbSNP
rs1295453762 5876 dbSNP
rs1471504114 5891 dbSNP
rs1158055179 5895 dbSNP
rs1389303972 5904 dbSNP
rs1458807441 5908 dbSNP
rs554471353 5910 dbSNP
rs1321502835 5912 dbSNP
rs1460036029 5917 dbSNP
rs1034928517 5920 dbSNP
rs1166755845 5927 dbSNP
rs1475416839 5933 dbSNP
rs1260956693 5937 dbSNP
rs1184773794 5939 dbSNP
rs951146509 5949 dbSNP
rs1242239175 5953 dbSNP
rs1436512909 5956 dbSNP
rs572801430 5960 dbSNP
rs1294957768 5968 dbSNP
rs1003861553 5971 dbSNP
rs1234210998 5972 dbSNP
rs1226959376 5976 dbSNP
rs1307349773 5982 dbSNP
rs1017109838 5992 dbSNP
rs546550276 5997 dbSNP
rs969472049 5998 dbSNP
rs564461059 6002 dbSNP
rs922135565 6010 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 131405.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guGAAUGAAGAAACGUCuacuc 5'
            :|||:||:||| |||     
Target 5' ucUUUAUUUUUUUACAG----- 3'
 		17 - 33
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000383763.5 | 3UTR | CUUAAGUCCUACCUCAUCUUUAUUUUUUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla -0.831 2.2e-4 -0.874 4.7e-5 13 Click to see details
GSE14794 Lymphoblastoid cells -0.121 1.3e-1 -0.140 9.4e-2 90 Click to see details
GSE28544 Breast cancer 0.082 3.5e-1 0.063 3.8e-1 24 Click to see details
GSE38226 Liver fibrosis -0.085 3.6e-1 -0.155 2.5e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.074 3.7e-1 -0.284 8.9e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.045 4.2e-1 -0.041 4.3e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUAD -0.672 0.01 -0.636 0.02 11 Click to see details
ESCA 0.724 0.01 0.817 0 9 Click to see details
THCA -0.18 0.09 -0.055 0.34 59 Click to see details
LIHC 0.172 0.12 0.197 0.09 49 Click to see details
STAD -0.21 0.14 -0.071 0.36 29 Click to see details
BRCA 0.096 0.2 0.110 0.17 79 Click to see details
KIRC -0.101 0.21 -0.073 0.28 65 Click to see details
BLCA -0.189 0.23 -0.074 0.39 17 Click to see details
HNSC -0.099 0.27 0.045 0.39 42 Click to see details
CHOL 0.166 0.33 0.133 0.37 9 Click to see details
KICH -0.083 0.35 -0.088 0.34 24 Click to see details
LUSC -0.044 0.4 -0.095 0.29 38 Click to see details
UCEC -0.043 0.43 0.058 0.41 19 Click to see details
PRAD 0.025 0.43 0.080 0.29 48 Click to see details
KIRP 0.011 0.48 0.150 0.21 31 Click to see details
PAAD 0.002 0.5 -0.250 0.38 4 Click to see details
PAAD 0.002 0.5 -0.250 0.38 4 Click to see details
PAAD 0.002 0.5 -0.250 0.38 4 Click to see details
PAAD 0.002 0.5 -0.250 0.38 4 Click to see details
PAAD 0.002 0.5 -0.250 0.38 4 Click to see details
87 hsa-miR-452-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT150000 MIDN midnolin 2 10
MIRT330600 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT358701 SUB1 SUB1 homolog, transcriptional regulator 2 4
MIRT362854 EIF4H eukaryotic translation initiation factor 4H 2 2
MIRT447215 ATXN7 ataxin 7 2 2
MIRT466655 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 6
MIRT483979 PANK1 pantothenate kinase 1 2 8
MIRT485118 SF3B3 splicing factor 3b subunit 3 2 2
MIRT488864 AUTS8 Autism, susceptibility to, 8 2 2
MIRT492293 SH2B3 SH2B adaptor protein 3 2 2
MIRT492976 NCK2 NCK adaptor protein 2 2 2
MIRT497410 LRRC40 leucine rich repeat containing 40 2 2
MIRT511143 MRPL17 mitochondrial ribosomal protein L17 2 6
MIRT512650 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT513017 NSFL1C NSFL1 cofactor 2 6
MIRT520445 TSPAN2 tetraspanin 2 2 6
MIRT527995 NDNF neuron derived neurotrophic factor 2 2
MIRT528667 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT533512 TRIM71 tripartite motif containing 71 2 2
MIRT537404 FBXO47 F-box protein 47 2 2
MIRT538161 DCP2 decapping mRNA 2 2 2
MIRT539124 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT540666 MIS18A MIS18 kinetochore protein A 2 4
MIRT542948 GDF11 growth differentiation factor 11 2 2
MIRT547534 MAML3 mastermind like transcriptional coactivator 3 2 2
MIRT559033 C20orf24 chromosome 20 open reading frame 24 2 4
MIRT559554 ARF6 ADP ribosylation factor 6 2 2
MIRT570177 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT573149 ITGA9 integrin subunit alpha 9 2 2
MIRT575849 Rab1 RAB1A, member RAS oncogene family 1 1
MIRT611034 RRP1B ribosomal RNA processing 1B 2 2
MIRT616281 HMGB1 high mobility group box 1 2 2
MIRT618372 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619540 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT622303 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 2 2
MIRT622590 PRRG4 proline rich and Gla domain 4 2 2
MIRT624441 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT637089 KLRD1 killer cell lectin like receptor D1 2 2
MIRT639084 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639334 NINJ1 ninjurin 1 2 2
MIRT639798 EIF3E eukaryotic translation initiation factor 3 subunit E 2 2
MIRT640851 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT641628 KIAA1244 ARFGEF family member 3 1 1
MIRT642634 EPPIN epididymal peptidase inhibitor 2 2
MIRT643053 EPPIN-WFDC6 EPPIN-WFDC6 readthrough 2 2
MIRT643416 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT645586 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT647393 FAM181B family with sequence similarity 181 member B 2 2
MIRT649411 CDC14B cell division cycle 14B 2 2
MIRT649477 CLDN16 claudin 16 2 2
MIRT651307 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT651387 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT653411 SLC7A2 solute carrier family 7 member 2 2 2
MIRT654084 RSPH4A radial spoke head 4 homolog A 2 2
MIRT654613 PTPRM protein tyrosine phosphatase, receptor type M 2 2
MIRT655338 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT656173 MRPL44 mitochondrial ribosomal protein L44 2 2
MIRT657272 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 2
MIRT657881 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT659875 CAPRIN1 cell cycle associated protein 1 2 2
MIRT662381 ICA1L islet cell autoantigen 1 like 2 4
MIRT666308 SLC22A3 solute carrier family 22 member 3 2 2
MIRT667274 NAV1 neuron navigator 1 2 2
MIRT667614 LIMCH1 LIM and calponin homology domains 1 2 2
MIRT674242 NUP62 nucleoporin 62 2 4
MIRT690386 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT693402 NUDT16 nudix hydrolase 16 2 2
MIRT702503 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT708632 STMN4 stathmin 4 2 2
MIRT708839 SCAND3 zinc finger BED-type containing 9 1 1
MIRT709016 HSBP1 heat shock factor binding protein 1 2 2
MIRT709235 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT710885 PARL presenilin associated rhomboid like 2 2
MIRT712262 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT712573 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 2 2
MIRT715046 PRPF38A pre-mRNA processing factor 38A 2 2
MIRT718905 GALR1 galanin receptor 1 2 2
MIRT719368 FEM1A fem-1 homolog A 2 2
MIRT719495 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719601 PRKX protein kinase, X-linked 2 2
MIRT719891 RRP36 ribosomal RNA processing 36 2 2
MIRT720063 ZNF449 zinc finger protein 449 2 2
MIRT721679 CMTM4 CKLF like MARVEL transmembrane domain containing 4 2 2
MIRT721724 VTI1A vesicle transport through interaction with t-SNAREs 1A 2 2
MIRT723370 ZNF470 zinc finger protein 470 2 2
MIRT724941 TXNL1 thioredoxin like 1 2 2
MIRT725302 NLRC5 NLR family CARD domain containing 5 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-452 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-452 Phenethyl isothiocyanate(PEITC) NULL 16741 Microarray neonatal mice liver 20145010 2010 up-regulated
miR-452 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 down-regulated
miR-452 Reversine NULL 210332 Microarray C2C12 myoblast cells 24513286 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-452 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-452 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-mir-452 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-mir-452 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-mir-452 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-452-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-452-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-452-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-452-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (HCT8)
hsa-miR-452-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-452-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-452-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-452-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-452-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-452-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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