pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TPM4   
Synonyms HEL-S-108
Description tropomyosin 4
Transcript NM_001145160   
Other Transcripts NM_003290   
Expression
Putative miRNA Targets on TPM4
3'UTR of TPM4
(miRNA target sites are highlighted)
>TPM4|NM_001145160|3'UTR
   1 GCAAAACAGAAGAGTCTTGTTCCAACAGAAACTCTGGAGCTCCGTGGGTCTTTCTCTTCTCTTGTAAGAAGTTCCTTTTG
  81 TTATTGCCATCTTCGCTTTGCTGGAAATGTCAAGCAAATTATGAATACATGACCAAATATTTTGTATCGGAGAAGCTTTG
 161 AGCACCAGTTAAATCTCATTCCTTCCCTTTTTTTTTCAAATGGCACCAGCTTTTTCAGCTCTCTTATTTTTTCCTTAAGT
 241 AGCATTTATTCCTAAGGTAGGCAGGGTATTTCCTAGTAAGCATACTTTCTTAAGACGGAGGCCATTTGGTTCCTGGGAGA
 321 ATAGGCAGCCCCACACTTTGAAGAATACAGACCCCAGTATCTAGTCGTGGATATAATTAAAACGCTGAAGACCATAACCT
 401 TTTGGGTCAACTGTTGGTCAAACTATAGGAGAGACCAGGGACCATCACATGGGTAGGGATTTTCCATCCAGAGCCAATAA
 481 AAGGACTGGTGGGGGCCGGGGGTGGCTATTGTGGGAAGTCATAACCCACAGATAGATCAACCTAAGAATCCTGGCCCTTC
 561 TCCACTCTCCACCATGCAGGACAAACATCTTCTCAAGCAGTCAACGTAGAATGCTTGGGAAATAGTCATAATTACCCACA
 641 TATAGTAATTAATAGATGGTAATTAATTGATCCTTGATGTGATGTTCTTTTGCATATTTCCTTCATTCTAAAGTTGTTCC
 721 CTGGCCGGGAGCGTTGGCTTTCGCCTGTAATCCCAACACTTTGGGAGGCCAGGACAGATCACTTGAGGTCAGGAGTTCGA
 801 GACCAGCCCAGCCAACATGGCGAAACCATGTCTCTACTAAAAATACAAAAATTATGGTGACGCCTGCCTGTAGTCCCAGC
 881 TACTCGGGAGGCTGAGGCAGGAGGATCGCTTGAACCCAGGAAGTGGAGACTGCAGTGAGCCGATATCGCACCACAGCGCT
 961 CCAGCCTGGTCGACAGAGTGAGACTCCATCTCAAGAAAAAATAAAAATAAAGTTGTTCTCTGAAGAGCAAATGTCTCATT
1041 CCAGTAATGACCCACTCAGCAGGAATATGGTGGAGTTCAGTCCAATTCAGGTCAGCCATATCCAAAAGACCACAAGTCAT
1121 TACTAAGTTGAGCAAAAGAGTTTTTATCTATTAGCAGAAAGGGCCTCTCTGGCAGCAGAGATTAAAAACTGGCCCAACTT
1201 CATTTCCATACTTCAGGGAACAGCAAATTGAGGATTTACTTATCTAGGACTTGAATTCCTTCTTTGGGACCAAGTTAATA
1281 AAAGACCAAGAAACTCCTGATTAAACTGGATAATGAAGGATTCTGTAGACAGGGCTGCACGTATCGGCTTTGTTTGACTT
1361 CTCTTTTCTCAGTTAACATCTCAGAGCTAGAACATTCCACATTCCCCAGCAGCGTGTGGGGGCTGACTAAAGTTTACAAT
1441 TCCAACTAAAAATCACCCTGCTTCTGGCTTATCTGAATCCCTTACCCACCCCACCCCACCACCCTACTCCTATTTATTCA
1521 GCACCACACTACCCAGGAAATACACTAGCAAATTGTGCAATGGAATAAAATCCACACTTTAGATTCTTGCAACTGTATCA
1601 TATGTAATAGTATCACTTTTTCTACATTTTGGTCAAATAAATTTTTACATAAACTAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accCGAAAGAUCAGAGUCGAGa 5'
             ||||     |:||||||| 
Target 5' ccaGCTT-----TTTCAGCTCt 3'
206 - 222 150.00 -14.60
2
miRNA  3' acCCGAA-AGAUCAGAGUCGAga 5'
            | ||| |||  ||||||:|  
Target 5' ttGACTTCTCTTTTCTCAGTTaa 3'
1354 - 1376 132.00 -13.60
3
miRNA  3' acCCGAAAGAUCAG----AGUCGAGa 5'
            ||  ||| ||||    |||| || 
Target 5' gtGGAGTTC-AGTCCAATTCAGGTCa 3'
1070 - 1094 125.00 -12.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14662545 13 COSMIC
COSN24507234 26 COSMIC
COSN20079239 44 COSMIC
COSN31491489 45 COSMIC
COSN31491507 45 COSMIC
COSN28669267 47 COSMIC
COSN8605163 47 COSMIC
COSN30530968 73 COSMIC
COSN30530957 81 COSMIC
COSN29461210 95 COSMIC
COSN31527984 95 COSMIC
COSN13786030 96 COSMIC
COSN30527063 125 COSMIC
COSN30533186 144 COSMIC
COSN26582475 149 COSMIC
COSN30128220 151 COSMIC
COSN30158712 165 COSMIC
COSN20093531 557 COSMIC
COSN17539530 750 COSMIC
COSN31961512 887 COSMIC
COSN31517991 991 COSMIC
COSN20093532 1047 COSMIC
COSN9349290 1060 COSMIC
rs143558304 1543 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1256167668 3 dbSNP
rs368900524 4 dbSNP
rs1206251872 9 dbSNP
rs1243397698 13 dbSNP
rs762878634 15 dbSNP
rs1180959349 20 dbSNP
rs764216060 23 dbSNP
rs1476055296 26 dbSNP
rs1228909350 27 dbSNP
rs372607957 27 dbSNP
rs774766759 28 dbSNP
rs762376164 33 dbSNP
rs1286263966 38 dbSNP
rs768022761 39 dbSNP
rs990827729 40 dbSNP
rs1303640098 41 dbSNP
rs1345891756 44 dbSNP
rs375338008 45 dbSNP
rs1301330903 47 dbSNP
rs1357476009 50 dbSNP
rs946215432 51 dbSNP
rs1458256022 56 dbSNP
rs543131161 58 dbSNP
rs773934055 63 dbSNP
rs1157422858 64 dbSNP
rs928702028 67 dbSNP
rs1256507846 69 dbSNP
rs1180913821 76 dbSNP
rs1482017528 78 dbSNP
rs1243315021 81 dbSNP
rs938782344 84 dbSNP
rs1328421317 85 dbSNP
rs1055790584 90 dbSNP
rs894503066 92 dbSNP
rs1322087712 93 dbSNP
rs1313764965 95 dbSNP
rs563013997 96 dbSNP
rs1422222146 97 dbSNP
rs1377195270 104 dbSNP
rs1290732134 110 dbSNP
rs1308112521 113 dbSNP
rs1038034003 130 dbSNP
rs1173378292 131 dbSNP
rs1396107107 136 dbSNP
rs1157587501 138 dbSNP
rs771566213 147 dbSNP
rs1163686970 149 dbSNP
rs775810104 149 dbSNP
rs993737225 150 dbSNP
rs772800637 151 dbSNP
rs3207457 153 dbSNP
rs1188658144 156 dbSNP
rs1464044149 160 dbSNP
rs1246177080 169 dbSNP
rs1215458827 186 dbSNP
rs1488705978 188 dbSNP
rs954450951 188 dbSNP
rs1242271525 192 dbSNP
rs1344842746 202 dbSNP
rs1320153960 204 dbSNP
rs531736069 206 dbSNP
rs760062417 210 dbSNP
rs1290738447 211 dbSNP
rs1368674738 214 dbSNP
rs1319196844 220 dbSNP
rs761130512 223 dbSNP
rs1389001155 224 dbSNP
rs1392031650 228 dbSNP
rs774385118 246 dbSNP
rs1303876003 257 dbSNP
rs1355982998 264 dbSNP
rs1168823150 265 dbSNP
rs1448401442 267 dbSNP
rs1194913409 269 dbSNP
rs1433720768 279 dbSNP
rs1266511034 282 dbSNP
rs1207844856 290 dbSNP
rs181484867 297 dbSNP
rs151083679 298 dbSNP
rs1206115500 302 dbSNP
rs990383866 322 dbSNP
rs914812262 325 dbSNP
rs1235453750 330 dbSNP
rs1332193754 339 dbSNP
rs112643959 345 dbSNP
rs765008967 351 dbSNP
rs977985516 359 dbSNP
rs1308301465 360 dbSNP
rs1428736140 361 dbSNP
rs1317178638 368 dbSNP
rs1368262691 377 dbSNP
rs764332716 378 dbSNP
rs141332431 385 dbSNP
rs1377070056 390 dbSNP
rs1196654242 393 dbSNP
rs1420709804 394 dbSNP
rs1244524980 398 dbSNP
rs938729774 399 dbSNP
rs1181140331 403 dbSNP
rs1482865587 404 dbSNP
rs567502216 406 dbSNP
rs1193630437 411 dbSNP
rs185969469 417 dbSNP
rs1455809296 426 dbSNP
rs915884285 430 dbSNP
rs942032837 436 dbSNP
rs1037582075 438 dbSNP
rs897732033 454 dbSNP
rs1348244117 456 dbSNP
rs1335773389 457 dbSNP
rs1396167630 471 dbSNP
rs993459577 472 dbSNP
rs1170792731 475 dbSNP
rs1458787186 486 dbSNP
rs1392464866 489 dbSNP
rs1460850256 490 dbSNP
rs561823912 491 dbSNP
rs1373103593 492 dbSNP
rs1471450643 496 dbSNP
rs890307349 498 dbSNP
rs377622341 499 dbSNP
rs1443115697 510 dbSNP
rs1255596160 512 dbSNP
rs868703705 527 dbSNP
rs1198749297 542 dbSNP
rs1373578183 542 dbSNP
rs1269243035 547 dbSNP
rs1225155271 552 dbSNP
rs1327512166 553 dbSNP
rs1285648045 556 dbSNP
rs10424384 568 dbSNP
rs957689521 572 dbSNP
rs568613626 573 dbSNP
rs1436574344 575 dbSNP
rs1389294876 584 dbSNP
rs1319806794 588 dbSNP
rs1455486848 591 dbSNP
rs924871096 593 dbSNP
rs1010986980 597 dbSNP
rs1020652630 598 dbSNP
rs556151965 606 dbSNP
rs145121230 607 dbSNP
rs1466303233 616 dbSNP
rs960207541 618 dbSNP
rs35855446 620 dbSNP
rs1208628705 626 dbSNP
rs1180043290 629 dbSNP
rs1229203297 633 dbSNP
rs1355225873 634 dbSNP
rs1281999485 638 dbSNP
rs991535570 640 dbSNP
rs1232706856 644 dbSNP
rs1470634246 648 dbSNP
rs1296833146 658 dbSNP
rs915998806 665 dbSNP
rs758022039 672 dbSNP
rs942164436 675 dbSNP
rs1460925530 678 dbSNP
rs973800867 679 dbSNP
rs1161886093 684 dbSNP
rs1165790195 695 dbSNP
rs1390834146 699 dbSNP
rs919290472 711 dbSNP
rs1474726729 720 dbSNP
rs1248909069 726 dbSNP
rs1222783786 727 dbSNP
rs188529032 728 dbSNP
rs1287372338 730 dbSNP
rs929191805 733 dbSNP
rs540499828 734 dbSNP
rs1143209 737 dbSNP
rs890254600 742 dbSNP
rs943209040 743 dbSNP
rs553816061 744 dbSNP
rs1354960857 746 dbSNP
rs1038882716 748 dbSNP
rs569637783 751 dbSNP
rs146864170 754 dbSNP
rs1435568709 774 dbSNP
rs1010684687 780 dbSNP
rs1021021841 788 dbSNP
rs902194274 799 dbSNP
rs1168051695 800 dbSNP
rs1408216516 802 dbSNP
rs1427950678 816 dbSNP
rs1192271673 822 dbSNP
rs1267247080 823 dbSNP
rs1354428880 829 dbSNP
rs1233317199 835 dbSNP
rs1294618636 844 dbSNP
rs999078390 852 dbSNP
rs1035950304 858 dbSNP
rs538402405 862 dbSNP
rs542892536 863 dbSNP
rs1290010750 868 dbSNP
rs1410142282 875 dbSNP
rs1359047665 880 dbSNP
rs960153892 886 dbSNP
rs562924923 887 dbSNP
rs531853864 889 dbSNP
rs1360946279 907 dbSNP
rs1176828292 908 dbSNP
rs1023165509 909 dbSNP
rs371245034 917 dbSNP
rs973533495 921 dbSNP
rs756234090 924 dbSNP
rs1175094102 926 dbSNP
rs140722571 929 dbSNP
rs1188721503 930 dbSNP
rs150400878 932 dbSNP
rs1208759988 937 dbSNP
rs548057673 942 dbSNP
rs911808930 943 dbSNP
rs943323458 946 dbSNP
rs755461864 947 dbSNP
rs138181014 949 dbSNP
rs1303509550 954 dbSNP
rs149159678 956 dbSNP
rs549970455 958 dbSNP
rs779339609 959 dbSNP
rs1042151201 970 dbSNP
rs1314175438 972 dbSNP
rs866669559 973 dbSNP
rs1157326500 976 dbSNP
rs902140956 981 dbSNP
rs1226080946 986 dbSNP
rs568579866 993 dbSNP
rs181426301 996 dbSNP
rs1249889135 1002 dbSNP
rs1209256923 1004 dbSNP
rs186588696 1010 dbSNP
rs1258759727 1013 dbSNP
rs1231009595 1020 dbSNP
rs1323732125 1029 dbSNP
rs1313695386 1030 dbSNP
rs571207396 1031 dbSNP
rs896060135 1043 dbSNP
rs1380647203 1044 dbSNP
rs1013201408 1047 dbSNP
rs1436502691 1048 dbSNP
rs1023533317 1049 dbSNP
rs1287502148 1061 dbSNP
rs1459710294 1069 dbSNP
rs771787273 1082 dbSNP
rs1350178320 1086 dbSNP
rs963593734 1092 dbSNP
rs1485450766 1098 dbSNP
rs995298310 1106 dbSNP
rs1258332388 1115 dbSNP
rs1445296091 1139 dbSNP
rs1192568515 1141 dbSNP
rs1373529151 1146 dbSNP
rs1259489411 1149 dbSNP
rs1476362298 1149 dbSNP
rs1026402684 1151 dbSNP
rs1488675147 1163 dbSNP
rs950843036 1165 dbSNP
rs987424807 1167 dbSNP
rs1357498604 1168 dbSNP
rs1276892245 1169 dbSNP
rs911922151 1170 dbSNP
rs1434937973 1171 dbSNP
rs56212635 1173 dbSNP
rs1326363227 1179 dbSNP
rs1175070349 1190 dbSNP
rs1382335251 1192 dbSNP
rs1388951447 1199 dbSNP
rs540766210 1200 dbSNP
rs554107472 1209 dbSNP
rs974705632 1211 dbSNP
rs1371959272 1217 dbSNP
rs1168676667 1239 dbSNP
rs1205715487 1241 dbSNP
rs1318432643 1245 dbSNP
rs767515861 1246 dbSNP
rs1200885701 1250 dbSNP
rs573989768 1259 dbSNP
rs746569882 1260 dbSNP
rs1266443501 1263 dbSNP
rs770412609 1268 dbSNP
rs1327512679 1279 dbSNP
rs1437953075 1302 dbSNP
rs1206043226 1321 dbSNP
rs915029823 1321 dbSNP
rs946578484 1323 dbSNP
rs1042489517 1331 dbSNP
rs542804768 1335 dbSNP
rs1236036303 1340 dbSNP
rs1301695300 1342 dbSNP
rs923709832 1344 dbSNP
rs939115414 1346 dbSNP
rs1235496519 1347 dbSNP
rs1352017345 1355 dbSNP
rs1257911099 1359 dbSNP
rs1348845865 1368 dbSNP
rs776613785 1371 dbSNP
rs746464970 1383 dbSNP
rs1204577515 1386 dbSNP
rs1466507301 1389 dbSNP
rs1056127242 1395 dbSNP
rs894834609 1405 dbSNP
rs866127761 1406 dbSNP
rs759470350 1410 dbSNP
rs765021931 1411 dbSNP
rs1466172328 1414 dbSNP
rs111599675 1415 dbSNP
rs1248551917 1417 dbSNP
rs190585886 1418 dbSNP
rs1483865979 1446 dbSNP
rs950790083 1461 dbSNP
rs1222123767 1462 dbSNP
rs1288630540 1486 dbSNP
rs1331635206 1486 dbSNP
rs1200779343 1494 dbSNP
rs768451946 1494 dbSNP
rs1361657343 1499 dbSNP
rs143595902 1502 dbSNP
rs1334592990 1503 dbSNP
rs1158608732 1506 dbSNP
rs1386586924 1507 dbSNP
rs1459270543 1509 dbSNP
rs1412402456 1511 dbSNP
rs1157744055 1513 dbSNP
rs1469840970 1518 dbSNP
rs1362221079 1520 dbSNP
rs767824509 1530 dbSNP
rs1324397738 1531 dbSNP
rs1424458005 1540 dbSNP
rs1243116988 1542 dbSNP
rs143558304 1542 dbSNP
rs964694843 1547 dbSNP
rs750590314 1550 dbSNP
rs975030640 1559 dbSNP
rs565273694 1561 dbSNP
rs1244958151 1572 dbSNP
rs1381374215 1573 dbSNP
rs1442047413 1578 dbSNP
rs1303886290 1586 dbSNP
rs1312889672 1587 dbSNP
rs182948066 1588 dbSNP
rs147192859 1591 dbSNP
rs968407628 1594 dbSNP
rs977942370 1616 dbSNP
rs563923350 1618 dbSNP
rs1383145576 1620 dbSNP
rs532864227 1626 dbSNP
rs1211910096 1635 dbSNP
rs1384719487 1649 dbSNP
rs939063088 1650 dbSNP
rs1468877942 1655 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 7171.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000300933.4 | 3UTR | CUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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