pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TOR1AIP1   
Synonyms LAP1, LAP1B, LGMD2Y
Description torsin 1A interacting protein 1
Transcript NM_015602   
Expression
Putative miRNA Targets on TOR1AIP1
3'UTR of TOR1AIP1
(miRNA target sites are highlighted)
>TOR1AIP1|NM_015602|3'UTR
   1 GAAGTGAGAGAGAAGAAAAATCATGTCCCAAGTTCTGAGAATTGTTCACACTTTCTAACCAGAGACAGAATTCAGAGCTC
  81 TTTTTGAAAGAACTAGTTTCTTTTTAAAGAAGTTAAGTGCTTACATAAACATGGAACATATAAATCATTCATTCAACCTA
 161 ATTATCTGTGATATGAGAGAATCATTTCAGTTTCCATTGAGAGCTCTGTTAAAGGTATCTTAGGAGTGCAGATTATATGC
 241 AGTTCCTTAGAGAATCTGTTTTGATTCTGGGCTGAGTTATTACAGTTATGGTATGACCAGTGAGAGGGATTTGTGTCCTT
 321 TCTTATGAACCTTCCTGATTTTTTAACTTAGATTTCTCACTAAGTTTCCTGAGTTATTAGTAAGATTGCTCCCTAAATGT
 401 AACCAGGGATTTTCCCATTATGTTCCCTTTTATACCATTTAGGTGTGAGTTCCTTAGCTTCTGCCTATAGGAACATAAGT
 481 AATGAAAGGTCATCTAGGTGTGTGTTTGGAATTTTTTTCTTTTGTTTTTTGGAAAATGGAAAGAACAAGGCAAGGAAGGA
 561 AAATTAATGGGGAAGCTGAAGGGAGGAAATGTTACAGTAATCCACTGAGATGTAGTTTAGTCAAACATAGGTATATGAAC
 641 TGTTAATCTTGGTGGATTCCGTTGGGATTTGTTTTTTACATCTCCTTTTTCCTTCCTTGAAGAAAAATTCTTGGCTGTCC
 721 CAAGGATTCTTCATGTATATTGCAAAATTTAATATATTTGTTCACTTGAGTCTTAAGAGTAGGTCAGGCCAAGGCAGGTG
 801 GATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC
 881 TGGGCGTGGTGGTGCATGCCTGAAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAG
 961 GTTGCAGTAAGCCGAGACCATGCTTATTGCCCTCCAGTCTGGGCAACAAAAATGAAACTCCGTCTCAAAAAAAAAAAAGT
1041 AGGTCAATTCGTAACAGTTTATTTTGGACACACCCTGAAGCTTTTGTTTTGAATTAAGAAATGAGTTTCAGGAATTGACA
1121 AACCATTTGTTAACCAGCTGTCCTGGGCTATTGAAGAAGATTTCATTTTCCGCGCATCCACTTGTTGCAGTCCAAGTCCT
1201 CTAGTGCAACGCCATAGCAAATATAAAGATTTACTATGCACGTGATACATTTTATGGAGTGCCTCAAGCCAAGATAGTGA
1281 ATTTATATGAAGGGTGTGAAATGTATTTCTTTACTACTATAGTAGTTTAGTTATAACTTTGCATCTATAATTGAGCTTTC
1361 TCATCTGTCAAATGCTATGGTTTTCTTAAAATGTTACAATTCTAGATCTATCCACCTTGTTTTTTTATTGTCTACAAACC
1441 ATTAAATGTAAATATTGTTTTTAGAGTCAGTCATTGGCTTTGTCATTTACCCTTTGAGAGTTCCACAAGTGGTAGTAGAG
1521 TGGTTTAACGTCTTTCCTCTAGTACTACCAGTATTCATAAATGTATACCCCTTACTGTAATTTGTTCCTCTTAGAAGTCA
1601 GATCATCTGATTTATAGAGGATTATGAAAACCAGAGTTTTTGAAAAGGCTTATTTTATACATACGTATTATATAGAGAAA
1681 CAAATGTTTTTATTAAATGTTTCATTGACCCAAGTAATTTAAAAGTAATATGTTACCTATGTCTTTCAGGAAAAATAATT
1761 ATAGCAGCTGATCTGTAAATGACTTTAAAAGCTATTTTAGTAATTTAAATAAATTTACTTTCTTGGTTTATACTCTCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     ::|||||||: 
Target 5' tacatctccttTTTCCTTCCTt 3'
677 - 698 131.00 -15.20
2
miRNA  3' gauucugguucggaGGAAGGGa 5'
                        ||||||: 
Target 5' tcctttcttatgaaCCTTCCTg 3'
316 - 337 124.00 -9.30
3
miRNA  3' gauuCUGGUUCGGAGGAAGGGa 5'
              |::: | | ||:||||: 
Target 5' gagtGGTTTAACGTCTTTCCTc 3'
1518 - 1539 122.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
257697 11 ClinVar
COSN30155942 7 COSMIC
COSN30168339 9 COSMIC
COSN17159700 30 COSMIC
COSN30518903 61 COSMIC
COSN30191633 74 COSMIC
COSN30162387 87 COSMIC
COSN31570854 98 COSMIC
COSN31607440 101 COSMIC
COSN30622484 175 COSMIC
COSN30163287 180 COSMIC
COSN30172171 202 COSMIC
COSN8408959 224 COSMIC
COSN31519666 234 COSMIC
COSN31487007 303 COSMIC
COSN31567697 344 COSMIC
COSN17181562 734 COSMIC
COSN6010513 1110 COSMIC
COSN29987889 1159 COSMIC
COSN16860739 1564 COSMIC
COSN21375390 1621 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201398151 2 dbSNP
rs1370023053 3 dbSNP
rs374784135 6 dbSNP
rs886038426 11 dbSNP
rs771593757 22 dbSNP
rs777071358 23 dbSNP
rs536987626 25 dbSNP
rs763829149 32 dbSNP
rs1228508307 38 dbSNP
rs761198445 49 dbSNP
rs1159891541 53 dbSNP
rs1458745522 55 dbSNP
rs974709447 58 dbSNP
rs1175415690 68 dbSNP
rs1447055455 70 dbSNP
rs1302283064 89 dbSNP
rs1426867674 96 dbSNP
rs1184337432 101 dbSNP
rs1485268167 107 dbSNP
rs760258269 110 dbSNP
rs1248094496 111 dbSNP
rs1211199304 112 dbSNP
rs1460350321 113 dbSNP
rs765171330 122 dbSNP
rs1052019386 136 dbSNP
rs1314238280 141 dbSNP
rs192672736 157 dbSNP
rs1214188850 163 dbSNP
rs929930323 167 dbSNP
rs982747270 169 dbSNP
rs1257058370 198 dbSNP
rs1339307358 229 dbSNP
rs768411683 233 dbSNP
rs1194088032 235 dbSNP
rs935311319 236 dbSNP
rs576566599 238 dbSNP
rs184473229 239 dbSNP
rs1466387599 241 dbSNP
rs1379102379 242 dbSNP
rs1167940218 247 dbSNP
rs1458328715 248 dbSNP
rs912602020 259 dbSNP
rs1193210149 265 dbSNP
rs1053811515 269 dbSNP
rs1390317382 271 dbSNP
rs1189918821 272 dbSNP
rs944117443 273 dbSNP
rs1039791265 281 dbSNP
rs188262171 283 dbSNP
rs947254786 284 dbSNP
rs191858741 285 dbSNP
rs1204174498 289 dbSNP
rs539024311 292 dbSNP
rs1300022815 299 dbSNP
rs1461432873 302 dbSNP
rs1243877757 305 dbSNP
rs905697330 305 dbSNP
rs530854 308 dbSNP
rs1035564847 309 dbSNP
rs1370797198 311 dbSNP
rs1170058030 314 dbSNP
rs998811751 316 dbSNP
rs184023316 319 dbSNP
rs754867283 322 dbSNP
rs1465734138 326 dbSNP
rs188757524 327 dbSNP
rs1248933967 328 dbSNP
rs574350572 330 dbSNP
rs963129185 353 dbSNP
rs974914550 356 dbSNP
rs1220471457 366 dbSNP
rs76359757 368 dbSNP
rs751239906 375 dbSNP
rs1245510568 377 dbSNP
rs1244739687 384 dbSNP
rs1326274415 389 dbSNP
rs1304704293 391 dbSNP
rs1409026883 392 dbSNP
rs1350834692 394 dbSNP
rs1309527149 398 dbSNP
rs778699559 407 dbSNP
rs1364489599 408 dbSNP
rs531814 415 dbSNP
rs924186221 418 dbSNP
rs1362574610 422 dbSNP
rs1260594346 434 dbSNP
rs1318674771 436 dbSNP
rs1158965375 446 dbSNP
rs1473135888 456 dbSNP
rs532222485 458 dbSNP
rs1213170470 462 dbSNP
rs995696486 468 dbSNP
rs1027608531 499 dbSNP
rs1268212352 507 dbSNP
rs1211724641 512 dbSNP
rs1348543449 514 dbSNP
rs1258918590 518 dbSNP
rs1227690407 520 dbSNP
rs1329660700 525 dbSNP
rs951627272 526 dbSNP
rs1402782803 544 dbSNP
rs1192653649 549 dbSNP
rs1267785439 552 dbSNP
rs1330164827 553 dbSNP
rs765168706 554 dbSNP
rs72708671 559 dbSNP
rs763075467 562 dbSNP
rs965372767 565 dbSNP
rs1388042153 569 dbSNP
rs1382080242 574 dbSNP
rs975445232 575 dbSNP
rs559470717 579 dbSNP
rs1414733497 581 dbSNP
rs947170167 588 dbSNP
rs528243297 593 dbSNP
rs906654870 594 dbSNP
rs1378423878 595 dbSNP
rs1201217861 597 dbSNP
rs142729478 607 dbSNP
rs1425716050 628 dbSNP
rs1477837431 632 dbSNP
rs568074544 634 dbSNP
rs1163584173 636 dbSNP
rs1261095312 646 dbSNP
rs536906607 649 dbSNP
rs1465282775 652 dbSNP
rs924474278 661 dbSNP
rs151007844 662 dbSNP
rs1057097321 678 dbSNP
rs1343981019 682 dbSNP
rs1275096056 683 dbSNP
rs1234932319 685 dbSNP
rs895461168 724 dbSNP
rs751943196 728 dbSNP
rs1012603162 730 dbSNP
rs1436534713 750 dbSNP
rs1044502699 754 dbSNP
rs1335230349 769 dbSNP
rs536777545 770 dbSNP
rs1174579139 777 dbSNP
rs995905935 779 dbSNP
rs538832818 781 dbSNP
rs1474549207 787 dbSNP
rs1029150576 790 dbSNP
rs781707139 794 dbSNP
rs954523515 800 dbSNP
rs1249854302 802 dbSNP
rs1201639368 809 dbSNP
rs1341715742 812 dbSNP
rs1279030571 815 dbSNP
rs1232682739 820 dbSNP
rs141266072 821 dbSNP
rs1337024526 823 dbSNP
rs572195994 831 dbSNP
rs987625490 832 dbSNP
rs1228496418 836 dbSNP
rs1366687713 837 dbSNP
rs1313621520 841 dbSNP
rs1447909874 850 dbSNP
rs534800531 852 dbSNP
rs549650 855 dbSNP
rs951577140 878 dbSNP
rs1323643984 881 dbSNP
rs537219655 885 dbSNP
rs989733963 886 dbSNP
rs1485392599 887 dbSNP
rs576756025 890 dbSNP
rs779416392 893 dbSNP
rs965315848 900 dbSNP
rs1180086971 908 dbSNP
rs1265158585 909 dbSNP
rs1478112474 917 dbSNP
rs948044035 918 dbSNP
rs1187201910 919 dbSNP
rs975442619 923 dbSNP
rs1273499529 924 dbSNP
rs374647152 933 dbSNP
rs748893690 942 dbSNP
rs1205362891 944 dbSNP
rs1343733416 945 dbSNP
rs921303650 950 dbSNP
rs368972572 951 dbSNP
rs372652973 956 dbSNP
rs1425084407 957 dbSNP
rs144993835 958 dbSNP
rs939464577 959 dbSNP
rs924424522 964 dbSNP
rs934501137 969 dbSNP
rs138792715 974 dbSNP
rs367621979 975 dbSNP
rs1405965699 981 dbSNP
rs1300440628 994 dbSNP
rs917177214 996 dbSNP
rs371811100 997 dbSNP
rs899116811 1000 dbSNP
rs1483826311 1002 dbSNP
rs1266258597 1003 dbSNP
rs1220195855 1010 dbSNP
rs996240743 1015 dbSNP
rs1361669162 1018 dbSNP
rs1292669095 1022 dbSNP
rs948327577 1023 dbSNP
rs1028680578 1027 dbSNP
rs550183269 1027 dbSNP
rs79582154 1027 dbSNP
rs77181899 1028 dbSNP
rs74906548 1029 dbSNP
rs1044062248 1033 dbSNP
rs1325497286 1038 dbSNP
rs1455577708 1039 dbSNP
rs544116982 1044 dbSNP
rs898858294 1051 dbSNP
rs1031136489 1052 dbSNP
rs185556104 1054 dbSNP
rs1311635742 1055 dbSNP
rs140619887 1060 dbSNP
rs930396892 1066 dbSNP
rs1190225476 1073 dbSNP
rs1488549835 1074 dbSNP
rs1047958728 1076 dbSNP
rs887252965 1077 dbSNP
rs1247915891 1094 dbSNP
rs150422179 1110 dbSNP
rs1207463733 1113 dbSNP
rs1464831448 1113 dbSNP
rs1269253770 1134 dbSNP
rs72708674 1137 dbSNP
rs1300868350 1144 dbSNP
rs1019786361 1145 dbSNP
rs530407167 1149 dbSNP
rs1369909393 1152 dbSNP
rs1022968949 1153 dbSNP
rs1268482864 1153 dbSNP
rs1387826526 1157 dbSNP
rs901432589 1164 dbSNP
rs1458639372 1166 dbSNP
rs1357191933 1170 dbSNP
rs997541297 1172 dbSNP
rs1028312330 1173 dbSNP
rs1237617043 1174 dbSNP
rs1426730810 1175 dbSNP
rs969149571 1176 dbSNP
rs1287871754 1184 dbSNP
rs978847886 1185 dbSNP
rs557152135 1189 dbSNP
rs1249219749 1196 dbSNP
rs190494104 1197 dbSNP
rs939413739 1211 dbSNP
rs1314182787 1212 dbSNP
rs772992203 1212 dbSNP
rs1271069560 1214 dbSNP
rs1235717032 1221 dbSNP
rs1483920078 1243 dbSNP
rs955825939 1244 dbSNP
rs1437153004 1247 dbSNP
rs1376792802 1258 dbSNP
rs1302030940 1262 dbSNP
rs992661722 1274 dbSNP
rs1181971594 1276 dbSNP
rs1249300772 1286 dbSNP
rs1166285234 1287 dbSNP
rs1428561756 1292 dbSNP
rs907677371 1298 dbSNP
rs1191094575 1304 dbSNP
rs940519812 1306 dbSNP
rs1160146492 1315 dbSNP
rs771315040 1316 dbSNP
rs1182815197 1319 dbSNP
rs1037578502 1321 dbSNP
rs917124746 1325 dbSNP
rs1174516432 1326 dbSNP
rs899057866 1334 dbSNP
rs1343017094 1341 dbSNP
rs948656148 1343 dbSNP
rs1448763305 1347 dbSNP
rs1319867306 1348 dbSNP
rs865842078 1349 dbSNP
rs138290237 1359 dbSNP
rs920255225 1360 dbSNP
rs1305846024 1363 dbSNP
rs1257626470 1370 dbSNP
rs1310320578 1374 dbSNP
rs1354126654 1375 dbSNP
rs149611646 1378 dbSNP
rs144414031 1398 dbSNP
rs1455877431 1400 dbSNP
rs1368432929 1402 dbSNP
rs565936374 1403 dbSNP
rs1276373000 1411 dbSNP
rs1047440229 1413 dbSNP
rs1250026678 1414 dbSNP
rs1030751430 1420 dbSNP
rs1313887423 1421 dbSNP
rs199943608 1428 dbSNP
rs1208137412 1439 dbSNP
rs1488174964 1447 dbSNP
rs1264815176 1456 dbSNP
rs16854952 1471 dbSNP
rs554658491 1475 dbSNP
rs1336721011 1491 dbSNP
rs1041190078 1495 dbSNP
rs901380323 1497 dbSNP
rs1286218324 1499 dbSNP
rs1180099265 1503 dbSNP
rs1350736676 1505 dbSNP
rs201458851 1513 dbSNP
rs997091761 1515 dbSNP
rs1022492574 1519 dbSNP
rs1029012795 1520 dbSNP
rs1294671133 1523 dbSNP
rs1459896386 1527 dbSNP
rs1189843881 1529 dbSNP
rs1427794853 1530 dbSNP
rs1414504357 1531 dbSNP
rs1415528405 1534 dbSNP
rs1196963093 1535 dbSNP
rs115544527 1537 dbSNP
rs1002476592 1539 dbSNP
rs1000614894 1542 dbSNP
rs1210426641 1546 dbSNP
rs1031720023 1548 dbSNP
rs1266099604 1555 dbSNP
rs1207914022 1557 dbSNP
rs1329547358 1559 dbSNP
rs1280982234 1563 dbSNP
rs1230575373 1564 dbSNP
rs1398160862 1567 dbSNP
rs1467295014 1569 dbSNP
rs537029784 1572 dbSNP
rs1442396765 1578 dbSNP
rs956103495 1578 dbSNP
rs1387094790 1584 dbSNP
rs1320421565 1593 dbSNP
rs960700964 1603 dbSNP
rs1391259925 1615 dbSNP
rs1171075529 1616 dbSNP
rs1477817950 1626 dbSNP
rs1435412873 1633 dbSNP
rs982780000 1636 dbSNP
rs1272874864 1650 dbSNP
rs1447692609 1653 dbSNP
rs1369536066 1657 dbSNP
rs908630088 1658 dbSNP
rs962791239 1662 dbSNP
rs1465214514 1663 dbSNP
rs992945279 1665 dbSNP
rs541192481 1666 dbSNP
rs1272255087 1668 dbSNP
rs1235891684 1672 dbSNP
rs970317955 1677 dbSNP
rs148376752 1682 dbSNP
rs1297574529 1686 dbSNP
rs180878028 1687 dbSNP
rs1328625622 1693 dbSNP
rs1258226751 1694 dbSNP
rs1332591400 1706 dbSNP
rs1414202884 1711 dbSNP
rs1403224709 1714 dbSNP
rs1175710759 1715 dbSNP
rs143273871 1721 dbSNP
rs1389602643 1728 dbSNP
rs930292124 1738 dbSNP
rs944353019 1740 dbSNP
rs1243719589 1742 dbSNP
rs1218998645 1774 dbSNP
rs186113237 1775 dbSNP
rs892210079 1787 dbSNP
rs1010671579 1789 dbSNP
rs1212549604 1790 dbSNP
rs1186426140 1805 dbSNP
rs189883350 1810 dbSNP
rs1044257928 1812 dbSNP
rs1422139633 1816 dbSNP
rs1478822828 1833 dbSNP
rs1491261921 1833 dbSNP
rs1491103524 1834 dbSNP
rs1393948079 1838 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 26092.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucUGGUUCGGAGGAAGGGa 5'
               | :: | :|:|||||| 
Target 5' ----aAAUGUGAUUUCUUCCCa 3'
1 - 18
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000606911.2 | 3UTR | AAAUGUGAUUUCUUCCCAUUGCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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