pre-miRNA Information
pre-miRNA hsa-mir-497   
Genomic Coordinates chr17: 7017911 - 7018022
Synonyms MIRN497, hsa-mir-497, MIR497
Description Homo sapiens miR-497 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-497-3p
Sequence 64| CAAACCACACUGUGGUGUUAGA |85
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 17 - 7017957 29233923 MiREDiBase
A-to-I 4 17 - 7017956 29233923 MiREDiBase
A-to-I 20 17 - 7017940 24964909, 25521855, 27229138, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1413601274 5 dbSNP
rs1028648384 6 dbSNP
rs1479092960 9 dbSNP
rs1261056598 10 dbSNP
rs997278260 11 dbSNP
rs1324708562 13 dbSNP
rs755634302 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMX3   
Synonyms PDIA13, TXNDC10
Description thioredoxin related transmembrane protein 3
Transcript NM_019022   
Expression
Putative miRNA Targets on TMX3
3'UTR of TMX3
(miRNA target sites are highlighted)
>TMX3|NM_019022|3'UTR
   1 GACTTGATGACTATAAAATATTTGTTAGGACTTCAAATTATTAAAGAGTCTATTTATTGAATTTAGACATTTAATCATGA
  81 TCTTTACAGAAAAGAACATGTTATTCGTATTTTGCTAATATCAACTGCATGGATTAAAGTAGTCCCTCCATACATGGGGA
 161 AGTGTTTGGAGCAAAGAGATGAACAGTTTGTCTGAAACAAACACAGAGCACTCCATCAAAATTTACCTGATCTTTGTGAT
 241 TAGAACAGAACAATTCTATTTGCATGTTTCTCTATCTGAATATTCTGTGACAAAAAGTTAAGATTCTTGGGCAGAATATT
 321 TAAATTGGTCAGTCAGGTAGAAGATACATGTGTGATATAGAAAAATAATGCCTCTCCTGCTGCCATCCGTTTCCCTCATA
 401 TATTTTGGACAAGATTTATATGGACAAAATTAAGTCTTTAAAATTTAGGCACTTTAAGGAGAACTAATAACTTTTTCCAT
 481 GTATCAAGATTATGAGGTTAAAAATAATGTGGTTTTATATAGCATAGTGGTTTTATTTTGTTAGTTATTTTTAAAGGAGA
 561 AGAAATGTTACTTTTTAACTTTATACTCAGTTGCATTATCATAAAATTTTCATATATGCCTAGATAATGGGGAAAAAAAG
 641 TCTTGTGATTGACTTTCGCAAAATAAACAGGATTTACTGAGTAGAGGTTTCAGCCCATTCCTTGGAATACTAACAGGTAT
 721 TTCATCAGTCATTGTAGGTTGGGAAGGGTCTCTGTTAATCCTACTCTGCTTTAGCCAGAATAGCCTAGTATTTTATTTCT
 801 ATTTTATATATTGAGATTTCTTCTAACATTTCCTTTGATAAAAATCTTCTGCTTTTTGAAAAGTGGTATGTATCATATTT
 881 TTATGTTTCTGGTGTGTGAACTTTATGGTAACTTCTACTCTAGAATACGTACGTATGCACCCACAGACACACACAGTTTA
 961 TTGACACATCTATTATGTAATGCTGTAGACCTGTCCGTGTCTGCTTCATAAGGAGTAACGACTGACATTAGCATGTCCAG
1041 TGACAAGTCACATCCGGTGTAAAAAAAAGAGATCAGCCAGTTACCTTCTCCATTGTCTTAGTTCTGTCACCCATTTCGTC
1121 AAGTGACCTCTCATCTTCTATAAACTAATACAGGAATTCTTTCCAAAGCAATGTCTAAAAACTCTTTTTTTTAAAGTAAC
1201 AGTTTGGTATGTTTATTGTAGATAAATTATTTTTGAGGCCTTCATTTTAGCTAAGTTTAGAATTTATATTAGGCAACTAT
1281 GATTTGAGTGGTTATTCATTGAGTAATTTTCCACTATAAAGAATTTTATTGAACATTTATTAAAAAATAATGTAATGCAT
1361 GGTCAAAAAATATGTAATTCATGGTCTGGACACTGACGTTGTTTAGGGATTTAGTCATCAAGGACAGCCCTCTGTTGTTT
1441 CTAATGCCGTACTAATCAAGACTGTATGGACACTTGCATCTTAAGTACTAAGGAATTACTAGTGATTGTTTTATTTTATC
1521 CATGTACTCTTTTAGTATTTAATAATTAAATACCTATTCTTAGTGTTTGACACTCCATATTTCTTTTTTTTGGAAATGAA
1601 ACAAATATGCAGTCCAAAATTCAGGAACTACTAGAGTGAAATGATATTAAGTGGAAACCAGAGATAAATGCTGTTAATTT
1681 AACAAGTAGATTCTTCTCCAAAGAATGATGAGTGATTCTTGGGAAGATAAATGTTAATGTTCCCAATAGTCAAGCTTGTT
1761 TTGCAGTAGTGAAAAGCTTAGATGAGTACGGATACCTCATTTGAAACTCAGCCTAGTAAGGAAGTGAAAACTTAGCAGTC
1841 AGTGACATGGGGAAATAGTTATAGAAAATGTCACTGAATTTTTTCATATTTATAATTAGTCATTTACATATTTTTGTCTT
1921 GTTGATCATTACCTGTAAATGAAAGACCTTAATAGGAAAAAAAGAGTAAAGCTCAGTGTGAATGCAAACATCCACAAAAT
2001 ATGATCTTCGTTTATATTCTGTGATGTTGTTTATAAATGAATGCCTCAGTTCTCTGCTACCCTTTTCACAGCTTTGTACT
2081 GTTTGCCTTATATTCTATTTGTGCTTTTAAAGTGTGTCTGTTGGGAAAACAAAATGTGTAGGTGGTTTGTAAGTGAATAA
2161 TTTTTATTTCTTCTTGTATTAAAATTTTGTTTTTTTCTCTACTTTGGGAGATGTTTATTTACATTGTCAGACTATTCACA
2241 AAACAGATTCTAAAATTTGTTTGCTCGTATGCTGTTCCCTTCAATGTGATATCAGAGATTACTATGAATGTTAGTTTCAT
2321 TCCGTGAAACATTACTTCCATATAAAGACAGATCTCTTAATAAGTGAATCTAGTGGAAGAACATAGGTATCATTCTAATT
2401 CCATGGTAAATTTTGTCATGATTCTATATGAATAATGGGGTCCTTCAGGAAGTTGGAATTTTTGCCTTCTCTTTTAATTG
2481 CAGTGAAGTTCTCTTTATAACTTCTAAAATTCGGAATTCTAGATCCTTGCTTTTGCAGAATTTGGTGCTCAGACAATATT
2561 TAAGGACATTTCAGCGAGACAAAGTGCATGTTTTTATCGAGTACCCTGTGCACCACATTATATCTGGCAATTCTTTTTGT
2641 TTCATTATGTGCATCAATATTTTTCTCAGCTACTATTACCTGAAACTTGTTTAACATGTATTAGACCTAGAATTTTCATT
2721 TTCTTTCTCACATAGTTGCTTCCTGGTATCTGATTTAGAAATAACATTTAAATGCCAAGTATCTGGGGGATTGAAGGAAG
2801 GGTCTATATGAGCAGGTGAATTAGCAGTACTGTTTTTGTTTAGTGGATATTGTTAGTGACTTTTTGTGTGTGTTTTGCTT
2881 TGGGACCTTTTTATTTTGGTGTTGCAAAAAGTAACATATTTTCATCATTGCTTCATACGACATGGAGTTAGGACAGGGAA
2961 AAATCATTCAACACTCCTTATGCATTAAATGATCAAATAAACCAGTGTAGGATATTAAGACTATCAATTGGTGGGATTAG
3041 GCTTGACATTTTATTTTTATAAATATATATTTTTTCTGAATGTGTCTGAGTCCAAGAGTGGGCAAAAAATAATTTTCTAC
3121 TTTGGACTAATCTATAGAGGTTTTTGAAAGTCTGCATTACTAACTTGTTGAATTCATGATATTCTGCCTATGGCACAAAT
3201 TGTAAACCTTTGTTTTTCTAAAATAAAGTAATTGAAAACCTGCAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agAUUGUGGUGUCACACCAAAc 5'
            ||| |  |:| |||||||| 
Target 5' gtTAAAA--ATAATGTGGTTTt 3'
497 - 516 160.00 -9.80
2
miRNA  3' agaUUGUGGUGU-CA--CACCAAAc 5'
             ||||  |:: ||  ||||||| 
Target 5' gaaAACAAAATGTGTAGGTGGTTTg 3'
2125 - 2149 153.00 -14.90
3
miRNA  3' agAUUGUGGUGUCACACCAAAC---- 5'
            | |:|: :||  |||||||     
Target 5' ttTTATATAGCATAGTGGTTTTATTT 3'
513 - 538 142.00 -10.22
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31505303 1 COSMIC
COSN6132705 17 COSMIC
COSN30184005 21 COSMIC
COSN30461022 34 COSMIC
COSN30521815 48 COSMIC
COSN30513256 69 COSMIC
COSN31514653 87 COSMIC
COSN30494940 96 COSMIC
COSN31596848 107 COSMIC
COSN31610320 201 COSMIC
COSN17078578 276 COSMIC
COSN26749656 596 COSMIC
COSN32157809 642 COSMIC
COSN29354731 883 COSMIC
COSN5431995 1313 COSMIC
COSN18882916 1354 COSMIC
COSN17076011 1361 COSMIC
COSN26657480 1577 COSMIC
COSN29528075 1642 COSMIC
COSN9843379 1858 COSMIC
COSN24199383 2266 COSMIC
COSN6132704 2324 COSMIC
COSN1754366 2599 COSMIC
COSN29146787 2648 COSMIC
COSN19049704 3024 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1245094959 2 dbSNP
rs1270691962 3 dbSNP
rs1399071304 7 dbSNP
rs1358006146 10 dbSNP
rs776200941 12 dbSNP
rs1414930469 13 dbSNP
rs1424396281 17 dbSNP
rs1201219988 21 dbSNP
rs377534484 24 dbSNP
rs770591474 25 dbSNP
rs777290833 29 dbSNP
rs138495733 31 dbSNP
rs748084733 33 dbSNP
rs1239218855 34 dbSNP
rs309204 43 dbSNP
rs1037093073 45 dbSNP
rs1476413151 48 dbSNP
rs754788151 48 dbSNP
rs1169046020 52 dbSNP
rs1033824575 57 dbSNP
rs1404015706 59 dbSNP
rs200346443 69 dbSNP
rs1200404653 77 dbSNP
rs1456397550 82 dbSNP
rs898729484 90 dbSNP
rs1324225565 95 dbSNP
rs1432273227 95 dbSNP
rs1270770487 97 dbSNP
rs1039067807 103 dbSNP
rs1243605048 104 dbSNP
rs940119077 106 dbSNP
rs1359836306 107 dbSNP
rs1216211694 109 dbSNP
rs941671150 110 dbSNP
rs1448869605 114 dbSNP
rs570151911 121 dbSNP
rs1047432007 123 dbSNP
rs76728077 124 dbSNP
rs1185925896 127 dbSNP
rs1386293982 129 dbSNP
rs1419460277 136 dbSNP
rs1157696158 145 dbSNP
rs1382320364 147 dbSNP
rs1402017000 150 dbSNP
rs1318421239 154 dbSNP
rs1339321356 156 dbSNP
rs933026744 158 dbSNP
rs909711671 159 dbSNP
rs1317034749 161 dbSNP
rs117426990 172 dbSNP
rs953907155 175 dbSNP
rs1313572693 181 dbSNP
rs1298799195 183 dbSNP
rs751970278 205 dbSNP
rs1353112636 209 dbSNP
rs974582729 211 dbSNP
rs1278047683 212 dbSNP
rs1460015234 221 dbSNP
rs1206178380 223 dbSNP
rs943234296 226 dbSNP
rs976710074 229 dbSNP
rs979284908 234 dbSNP
rs1370669477 236 dbSNP
rs1332494102 239 dbSNP
rs34309603 248 dbSNP
rs913880239 251 dbSNP
rs566315624 253 dbSNP
rs1158745336 256 dbSNP
rs1404769464 270 dbSNP
rs1394974282 274 dbSNP
rs992133205 276 dbSNP
rs1406721323 284 dbSNP
rs1031321901 287 dbSNP
rs1297677743 302 dbSNP
rs998548848 308 dbSNP
rs1466669884 311 dbSNP
rs1337272474 315 dbSNP
rs528448868 316 dbSNP
rs1274466918 330 dbSNP
rs1321576102 332 dbSNP
rs1034204252 337 dbSNP
rs1002373744 341 dbSNP
rs181989174 349 dbSNP
rs74781301 352 dbSNP
rs1194534701 353 dbSNP
rs1010988429 356 dbSNP
rs895322092 358 dbSNP
rs1182139154 365 dbSNP
rs565562277 368 dbSNP
rs368488856 372 dbSNP
rs906516305 374 dbSNP
rs1429305630 376 dbSNP
rs879222691 382 dbSNP
rs1461452297 388 dbSNP
rs887368742 389 dbSNP
rs1398430859 397 dbSNP
rs1047414567 398 dbSNP
rs1302847435 398 dbSNP
rs147106059 400 dbSNP
rs1225521439 401 dbSNP
rs901588884 404 dbSNP
rs1317330582 408 dbSNP
rs1225925074 416 dbSNP
rs1253571917 420 dbSNP
rs531180346 423 dbSNP
rs943140598 426 dbSNP
rs1483971524 431 dbSNP
rs1201089607 435 dbSNP
rs765051295 439 dbSNP
rs1427390554 441 dbSNP
rs1209651586 447 dbSNP
rs1168314058 451 dbSNP
rs1374721417 458 dbSNP
rs759198948 463 dbSNP
rs1353994632 464 dbSNP
rs1310363000 474 dbSNP
rs940086478 477 dbSNP
rs1043558515 478 dbSNP
rs1407027025 479 dbSNP
rs1303950362 483 dbSNP
rs776582380 485 dbSNP
rs888495199 491 dbSNP
rs1306978930 509 dbSNP
rs1298456458 515 dbSNP
rs561041386 525 dbSNP
rs1290067666 528 dbSNP
rs1404380770 529 dbSNP
rs1224318902 530 dbSNP
rs1292039100 537 dbSNP
rs1485298253 540 dbSNP
rs775830437 544 dbSNP
rs1311154176 545 dbSNP
rs879683199 548 dbSNP
rs1361487560 556 dbSNP
rs747003143 565 dbSNP
rs1468453064 571 dbSNP
rs1363126253 576 dbSNP
rs1182868059 584 dbSNP
rs1188120797 584 dbSNP
rs796734048 590 dbSNP
rs1425511100 591 dbSNP
rs796158307 593 dbSNP
rs932449186 593 dbSNP
rs542319013 594 dbSNP
rs309203 598 dbSNP
rs977056745 605 dbSNP
rs943998126 614 dbSNP
rs1186612030 617 dbSNP
rs79541634 620 dbSNP
rs141869835 623 dbSNP
rs76386711 624 dbSNP
rs1219223593 625 dbSNP
rs1349038548 628 dbSNP
rs968356664 628 dbSNP
rs1021294353 633 dbSNP
rs1247173747 634 dbSNP
rs951589017 637 dbSNP
rs1029956457 640 dbSNP
rs1260525829 640 dbSNP
rs309202 645 dbSNP
rs556153733 646 dbSNP
rs756339679 657 dbSNP
rs746037888 658 dbSNP
rs1033873527 660 dbSNP
rs1004197796 682 dbSNP
rs1183971610 689 dbSNP
rs1406897947 694 dbSNP
rs1417579020 701 dbSNP
rs1161500661 705 dbSNP
rs1345916301 717 dbSNP
rs1469345406 719 dbSNP
rs1291502780 732 dbSNP
rs1408952128 735 dbSNP
rs906824824 744 dbSNP
rs1297989243 752 dbSNP
rs1371581846 756 dbSNP
rs1221752896 758 dbSNP
rs1308663311 759 dbSNP
rs151131158 762 dbSNP
rs1222369730 766 dbSNP
rs1260627408 776 dbSNP
rs1462605621 780 dbSNP
rs1210665185 781 dbSNP
rs1232118221 785 dbSNP
rs1341336051 801 dbSNP
rs1004183484 808 dbSNP
rs888463997 816 dbSNP
rs1048485477 820 dbSNP
rs541596462 827 dbSNP
rs1043527740 833 dbSNP
rs932775373 843 dbSNP
rs189138221 845 dbSNP
rs781567879 847 dbSNP
rs1480196185 849 dbSNP
rs1174387693 850 dbSNP
rs1383910692 851 dbSNP
rs1470607968 872 dbSNP
rs899651139 898 dbSNP
rs1170323890 905 dbSNP
rs1353170692 907 dbSNP
rs1444795130 908 dbSNP
rs371498654 910 dbSNP
rs945235427 915 dbSNP
rs913819680 918 dbSNP
rs184472303 919 dbSNP
rs375015296 923 dbSNP
rs1415676662 927 dbSNP
rs926579629 928 dbSNP
rs924491246 929 dbSNP
rs1272190677 932 dbSNP
rs977314570 933 dbSNP
rs941415146 939 dbSNP
rs1163570300 940 dbSNP
rs1252206757 941 dbSNP
rs554937684 947 dbSNP
rs370262513 955 dbSNP
rs1224418965 956 dbSNP
rs1271193097 956 dbSNP
rs909989411 956 dbSNP
rs982944499 970 dbSNP
rs1264844780 972 dbSNP
rs947023466 974 dbSNP
rs914255605 976 dbSNP
rs1171573678 977 dbSNP
rs552608273 979 dbSNP
rs1365284522 981 dbSNP
rs1423637838 996 dbSNP
rs991625567 997 dbSNP
rs1346913224 1005 dbSNP
rs977367901 1008 dbSNP
rs773833942 1014 dbSNP
rs958518507 1015 dbSNP
rs534408223 1019 dbSNP
rs1007256098 1020 dbSNP
rs1034263308 1033 dbSNP
rs982264930 1044 dbSNP
rs1452323183 1046 dbSNP
rs998655903 1046 dbSNP
rs970894961 1055 dbSNP
rs576916778 1056 dbSNP
rs751928582 1057 dbSNP
rs75597067 1068 dbSNP
rs1189725644 1069 dbSNP
rs1161358649 1071 dbSNP
rs1443138622 1071 dbSNP
rs939244118 1071 dbSNP
rs1367058428 1076 dbSNP
rs1428823587 1083 dbSNP
rs1326079089 1087 dbSNP
rs1342889050 1090 dbSNP
rs1323964154 1099 dbSNP
rs1388364312 1101 dbSNP
rs1004487421 1106 dbSNP
rs952672370 1107 dbSNP
rs1027016560 1109 dbSNP
rs566154986 1117 dbSNP
rs758941454 1118 dbSNP
rs17079542 1122 dbSNP
rs1474872664 1124 dbSNP
rs1282278818 1127 dbSNP
rs1448776231 1132 dbSNP
rs539200981 1133 dbSNP
rs1243070253 1138 dbSNP
rs1185831437 1140 dbSNP
rs1443254856 1140 dbSNP
rs1369368502 1141 dbSNP
rs1008026130 1145 dbSNP
rs1157601872 1149 dbSNP
rs1405227763 1151 dbSNP
rs1199999593 1152 dbSNP
rs903035701 1159 dbSNP
rs1470140115 1167 dbSNP
rs1450284828 1170 dbSNP
rs1251554894 1177 dbSNP
rs1340799767 1182 dbSNP
rs1041592381 1184 dbSNP
rs941407179 1185 dbSNP
rs909958883 1186 dbSNP
rs1353003876 1190 dbSNP
rs7231899 1192 dbSNP
rs914223116 1193 dbSNP
rs930047060 1193 dbSNP
rs1055506781 1194 dbSNP
rs1257349881 1196 dbSNP
rs17079540 1199 dbSNP
rs1180720181 1201 dbSNP
rs1018552117 1205 dbSNP
rs986198386 1209 dbSNP
rs967722675 1210 dbSNP
rs1427928421 1218 dbSNP
rs1021925427 1221 dbSNP
rs1009234751 1232 dbSNP
rs892235660 1233 dbSNP
rs17079538 1239 dbSNP
rs1003408870 1244 dbSNP
rs981613247 1258 dbSNP
rs1235108110 1259 dbSNP
rs1045021736 1272 dbSNP
rs1410618013 1272 dbSNP
rs1321462356 1274 dbSNP
rs970862330 1278 dbSNP
rs908735112 1281 dbSNP
rs1339215718 1285 dbSNP
rs1047111937 1299 dbSNP
rs1253027245 1305 dbSNP
rs930016071 1307 dbSNP
rs922739465 1309 dbSNP
rs762654104 1311 dbSNP
rs983019652 1311 dbSNP
rs144939224 1316 dbSNP
rs942921437 1318 dbSNP
rs1326259731 1320 dbSNP
rs1461372061 1338 dbSNP
rs111665238 1342 dbSNP
rs1408913273 1343 dbSNP
rs1430694129 1348 dbSNP
rs911456628 1348 dbSNP
rs1302758383 1349 dbSNP
rs187140851 1351 dbSNP
rs1388589810 1357 dbSNP
rs968946754 1358 dbSNP
rs979003370 1358 dbSNP
rs753506161 1361 dbSNP
rs1173926528 1364 dbSNP
rs914886901 1370 dbSNP
rs879451048 1374 dbSNP
rs1343281337 1376 dbSNP
rs527415624 1379 dbSNP
rs1205488409 1382 dbSNP
rs1290564105 1388 dbSNP
rs559802487 1389 dbSNP
rs1489675708 1391 dbSNP
rs544822795 1397 dbSNP
rs1440843730 1398 dbSNP
rs1190899433 1403 dbSNP
rs1235158897 1404 dbSNP
rs1449836193 1405 dbSNP
rs964398294 1407 dbSNP
rs1163257482 1408 dbSNP
rs184511218 1409 dbSNP
rs1459584189 1416 dbSNP
rs1294215032 1421 dbSNP
rs1384292215 1422 dbSNP
rs969214210 1425 dbSNP
rs1023891284 1431 dbSNP
rs1366446110 1436 dbSNP
rs144059283 1437 dbSNP
rs1245694358 1440 dbSNP
rs1005448699 1448 dbSNP
rs218286 1449 dbSNP
rs1047081055 1451 dbSNP
rs1485246830 1459 dbSNP
rs760438817 1460 dbSNP
rs573874795 1464 dbSNP
rs1336803595 1469 dbSNP
rs745359305 1469 dbSNP
rs1302404818 1470 dbSNP
rs994193893 1472 dbSNP
rs901252202 1476 dbSNP
rs1182771445 1477 dbSNP
rs1383096816 1484 dbSNP
rs1240669158 1488 dbSNP
rs113263300 1490 dbSNP
rs1363347173 1491 dbSNP
rs1451704515 1520 dbSNP
rs1323216811 1521 dbSNP
rs903004438 1524 dbSNP
rs554692010 1525 dbSNP
rs1417157486 1532 dbSNP
rs1011447689 1535 dbSNP
rs893016964 1536 dbSNP
rs1441430232 1542 dbSNP
rs1381757718 1543 dbSNP
rs565534057 1545 dbSNP
rs773049092 1546 dbSNP
rs35374224 1555 dbSNP
rs1056127482 1559 dbSNP
rs1335640184 1566 dbSNP
rs1315885961 1579 dbSNP
rs936996093 1583 dbSNP
rs551320255 1592 dbSNP
rs771905456 1596 dbSNP
rs536631137 1599 dbSNP
rs761677719 1604 dbSNP
rs1045467869 1608 dbSNP
rs940450342 1617 dbSNP
rs1484097352 1622 dbSNP
rs1182719605 1626 dbSNP
rs1417485741 1643 dbSNP
rs1161478412 1649 dbSNP
rs572586395 1658 dbSNP
rs982987006 1660 dbSNP
rs1174876767 1665 dbSNP
rs1175953160 1675 dbSNP
rs1449213521 1682 dbSNP
rs952859590 1687 dbSNP
rs111798343 1693 dbSNP
rs1372179354 1698 dbSNP
rs774215225 1700 dbSNP
rs1456438319 1707 dbSNP
rs956405613 1708 dbSNP
rs1385949803 1709 dbSNP
rs554279215 1710 dbSNP
rs920155434 1716 dbSNP
rs976082663 1726 dbSNP
rs1313805206 1729 dbSNP
rs1210563727 1730 dbSNP
rs964052718 1738 dbSNP
rs1238055512 1742 dbSNP
rs1190233554 1745 dbSNP
rs1020054428 1746 dbSNP
rs771326271 1751 dbSNP
rs981843027 1755 dbSNP
rs969560909 1757 dbSNP
rs986830930 1772 dbSNP
rs536012591 1780 dbSNP
rs539238050 1789 dbSNP
rs952588804 1790 dbSNP
rs1318463184 1794 dbSNP
rs192725085 1815 dbSNP
rs901140719 1816 dbSNP
rs1011333538 1821 dbSNP
rs1309442493 1822 dbSNP
rs773795496 1832 dbSNP
rs892975294 1836 dbSNP
rs1379814067 1837 dbSNP
rs1272506002 1842 dbSNP
rs1294591745 1847 dbSNP
rs1006953674 1855 dbSNP
rs1412448199 1861 dbSNP
rs889883378 1862 dbSNP
rs1339780224 1870 dbSNP
rs879409429 1872 dbSNP
rs1275616642 1873 dbSNP
rs375156723 1878 dbSNP
rs1219485901 1879 dbSNP
rs187438862 1883 dbSNP
rs1001882065 1886 dbSNP
rs538205015 1888 dbSNP
rs184123199 1897 dbSNP
rs1186409010 1903 dbSNP
rs1417873103 1906 dbSNP
rs1401500851 1913 dbSNP
rs1170163243 1916 dbSNP
rs1370791724 1919 dbSNP
rs906856773 1920 dbSNP
rs548740682 1931 dbSNP
rs772009419 1945 dbSNP
rs947582317 1951 dbSNP
rs1351086287 1953 dbSNP
rs1045458832 1959 dbSNP
rs1288204130 1961 dbSNP
rs940419006 1962 dbSNP
rs1230348620 1964 dbSNP
rs568682975 1967 dbSNP
rs527261230 1969 dbSNP
rs1226784893 1972 dbSNP
rs1292164422 1976 dbSNP
rs199833080 1985 dbSNP
rs77544781 1987 dbSNP
rs1215771338 1990 dbSNP
rs1246719149 1996 dbSNP
rs17079529 2002 dbSNP
rs1189624377 2003 dbSNP
rs532852632 2009 dbSNP
rs931469210 2014 dbSNP
rs920105118 2019 dbSNP
rs528575139 2024 dbSNP
rs942972322 2027 dbSNP
rs1194595861 2032 dbSNP
rs1316937094 2041 dbSNP
rs912554348 2056 dbSNP
rs1386380348 2059 dbSNP
rs986726119 2061 dbSNP
rs967362241 2080 dbSNP
rs1437134582 2081 dbSNP
rs146728097 2090 dbSNP
rs916357256 2095 dbSNP
rs1446149185 2097 dbSNP
rs1214895134 2101 dbSNP
rs990214291 2104 dbSNP
rs143433197 2105 dbSNP
rs957210462 2111 dbSNP
rs1034626273 2112 dbSNP
rs1331866952 2118 dbSNP
rs1001451929 2128 dbSNP
rs907154226 2134 dbSNP
rs952558244 2144 dbSNP
rs1230896178 2151 dbSNP
rs1242974948 2160 dbSNP
rs1024230568 2164 dbSNP
rs1185047498 2166 dbSNP
rs1333479869 2170 dbSNP
rs1472891534 2176 dbSNP
rs1004516922 2177 dbSNP
rs886118805 2178 dbSNP
rs972606323 2181 dbSNP
rs1278305552 2190 dbSNP
rs1215907667 2194 dbSNP
rs1048818486 2195 dbSNP
rs930411097 2196 dbSNP
rs1405152884 2197 dbSNP
rs965694112 2197 dbSNP
rs1412536750 2203 dbSNP
rs898649204 2205 dbSNP
rs1335859379 2207 dbSNP
rs563927235 2208 dbSNP
rs1040307601 2213 dbSNP
rs112287346 2217 dbSNP
rs1019584008 2222 dbSNP
rs1287470074 2230 dbSNP
rs747398189 2234 dbSNP
rs753575177 2236 dbSNP
rs1343406555 2244 dbSNP
rs1007333472 2247 dbSNP
rs1279728650 2248 dbSNP
rs1442678449 2254 dbSNP
rs1180969269 2259 dbSNP
rs778134619 2262 dbSNP
rs889861617 2266 dbSNP
rs758844181 2267 dbSNP
rs753208250 2273 dbSNP
rs1376999716 2275 dbSNP
rs561981614 2278 dbSNP
rs1053232486 2284 dbSNP
rs544127076 2287 dbSNP
rs938916838 2294 dbSNP
rs946028631 2303 dbSNP
rs1306393121 2314 dbSNP
rs913261277 2323 dbSNP
rs370538310 2324 dbSNP
rs1417711556 2331 dbSNP
rs957722421 2339 dbSNP
rs1236024251 2340 dbSNP
rs1275854118 2345 dbSNP
rs1339117554 2349 dbSNP
rs1046047335 2353 dbSNP
rs1254695229 2356 dbSNP
rs947751051 2364 dbSNP
rs1467991350 2366 dbSNP
rs372903516 2369 dbSNP
rs1483791350 2372 dbSNP
rs927146627 2376 dbSNP
rs1265996557 2382 dbSNP
rs980304586 2388 dbSNP
rs971262938 2402 dbSNP
rs1024199276 2404 dbSNP
rs190750764 2407 dbSNP
rs1305376004 2409 dbSNP
rs1392271569 2411 dbSNP
rs916326043 2420 dbSNP
rs572423540 2426 dbSNP
rs1388634271 2431 dbSNP
rs1389086782 2433 dbSNP
rs950343000 2450 dbSNP
rs1365003798 2456 dbSNP
rs202036252 2473 dbSNP
rs144262274 2476 dbSNP
rs869101903 2476 dbSNP
rs530460496 2477 dbSNP
rs1228630609 2478 dbSNP
rs1027351437 2483 dbSNP
rs76603743 2487 dbSNP
rs760374046 2488 dbSNP
rs1038792157 2489 dbSNP
rs1267978841 2490 dbSNP
rs1007443008 2492 dbSNP
rs1186471892 2505 dbSNP
rs77770447 2512 dbSNP
rs1450370732 2515 dbSNP
rs139619503 2522 dbSNP
rs767290899 2525 dbSNP
rs1463636745 2535 dbSNP
rs1021582111 2545 dbSNP
rs1352950641 2546 dbSNP
rs1433463572 2556 dbSNP
rs913227220 2557 dbSNP
rs1323001942 2561 dbSNP
rs1169966090 2568 dbSNP
rs1054904341 2574 dbSNP
rs150599074 2575 dbSNP
rs555614881 2576 dbSNP
rs1003476050 2580 dbSNP
rs61166048 2582 dbSNP
rs1045076204 2584 dbSNP
rs1328431173 2584 dbSNP
rs1196995681 2586 dbSNP
rs774312593 2590 dbSNP
rs768558262 2598 dbSNP
rs971196309 2604 dbSNP
rs566169349 2610 dbSNP
rs550957387 2613 dbSNP
rs1250291868 2622 dbSNP
rs1411275707 2624 dbSNP
rs1048110013 2633 dbSNP
rs1161973280 2639 dbSNP
rs1389912628 2646 dbSNP
rs1465859555 2647 dbSNP
rs1301402061 2649 dbSNP
rs532889701 2650 dbSNP
rs1397378132 2667 dbSNP
rs1385612117 2675 dbSNP
rs1293420661 2679 dbSNP
rs918370515 2683 dbSNP
rs983352843 2685 dbSNP
rs17079526 2696 dbSNP
rs943910580 2700 dbSNP
rs1317372436 2701 dbSNP
rs1209175520 2703 dbSNP
rs1253972900 2706 dbSNP
rs1027320355 2722 dbSNP
rs1232633403 2723 dbSNP
rs1182633036 2732 dbSNP
rs1251233324 2734 dbSNP
rs1471643688 2736 dbSNP
rs994870084 2742 dbSNP
rs1413362398 2745 dbSNP
rs964423829 2746 dbSNP
rs1017749274 2752 dbSNP
rs1393677772 2755 dbSNP
rs1008673633 2756 dbSNP
rs1313100328 2761 dbSNP
rs79329274 2766 dbSNP
rs1297698347 2775 dbSNP
rs1435500408 2776 dbSNP
rs187481133 2783 dbSNP
rs1289613891 2785 dbSNP
rs148723978 2806 dbSNP
rs1433908815 2809 dbSNP
rs1218531281 2812 dbSNP
rs892009040 2815 dbSNP
rs1183836103 2816 dbSNP
rs990137038 2824 dbSNP
rs1274185135 2829 dbSNP
rs956104736 2831 dbSNP
rs1207411557 2832 dbSNP
rs1032211744 2837 dbSNP
rs1488464198 2838 dbSNP
rs1189963923 2841 dbSNP
rs540492759 2842 dbSNP
rs1434118813 2853 dbSNP
rs1168282372 2860 dbSNP
rs935970404 2861 dbSNP
rs8098944 2864 dbSNP
rs1023136217 2867 dbSNP
rs1354578241 2868 dbSNP
rs1013563290 2874 dbSNP
rs1182002971 2874 dbSNP
rs1435731345 2879 dbSNP
rs1044856054 2887 dbSNP
rs1486440316 2894 dbSNP
rs541730569 2899 dbSNP
rs1209140898 2911 dbSNP
rs546417550 2912 dbSNP
rs1261705733 2913 dbSNP
rs1241735250 2916 dbSNP
rs529977301 2920 dbSNP
rs1230847843 2924 dbSNP
rs1273865138 2925 dbSNP
rs1321186866 2927 dbSNP
rs142690013 2930 dbSNP
rs1248974054 2931 dbSNP
rs559277232 2937 dbSNP
rs560498188 2938 dbSNP
rs983321873 2939 dbSNP
rs1162432940 2957 dbSNP
rs1246528463 2958 dbSNP
rs545416639 2963 dbSNP
rs578065413 2964 dbSNP
rs929125573 2966 dbSNP
rs1419681081 2967 dbSNP
rs920480106 2969 dbSNP
rs896906534 2972 dbSNP
rs1351559958 2973 dbSNP
rs973364630 2984 dbSNP
rs1319691519 2988 dbSNP
rs1441496732 2988 dbSNP
rs778021727 2999 dbSNP
rs556578490 3003 dbSNP
rs943802086 3004 dbSNP
rs1270988014 3010 dbSNP
rs1355830930 3014 dbSNP
rs544480168 3015 dbSNP
rs1049593644 3021 dbSNP
rs932556248 3031 dbSNP
rs1208614308 3035 dbSNP
rs574147178 3036 dbSNP
rs954501652 3041 dbSNP
rs1385328178 3042 dbSNP
rs182798710 3059 dbSNP
rs1466519303 3064 dbSNP
rs772526082 3066 dbSNP
rs748496534 3067 dbSNP
rs1472227356 3068 dbSNP
rs555528912 3069 dbSNP
rs1010327413 3071 dbSNP
rs550827823 3076 dbSNP
rs1158319841 3082 dbSNP
rs1164982711 3086 dbSNP
rs1458623499 3086 dbSNP
rs1318662726 3088 dbSNP
rs1475925915 3088 dbSNP
rs1254821513 3090 dbSNP
rs1186721245 3094 dbSNP
rs1446033829 3095 dbSNP
rs1447236902 3099 dbSNP
rs891976337 3101 dbSNP
rs1356142442 3103 dbSNP
rs1228380700 3109 dbSNP
rs534252288 3111 dbSNP
rs1262789404 3117 dbSNP
rs1033654830 3120 dbSNP
rs1206104164 3127 dbSNP
rs1000475483 3129 dbSNP
rs905845753 3132 dbSNP
rs924642850 3134 dbSNP
rs1485173427 3139 dbSNP
rs1207560430 3141 dbSNP
rs1259078167 3153 dbSNP
rs1475248245 3156 dbSNP
rs1260691329 3172 dbSNP
rs1180748041 3176 dbSNP
rs541246820 3176 dbSNP
rs1409687308 3181 dbSNP
rs1471094848 3182 dbSNP
rs1158958792 3189 dbSNP
rs113513963 3190 dbSNP
rs1044434751 3193 dbSNP
rs1336383889 3204 dbSNP
rs950108903 3205 dbSNP
rs1409290264 3228 dbSNP
rs981894156 3228 dbSNP
rs895862740 3230 dbSNP
rs1047849325 3232 dbSNP
rs1286468542 3232 dbSNP
rs929102838 3235 dbSNP
rs1274684572 3239 dbSNP
rs1343298204 3244 dbSNP
rs920464844 3245 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 54495.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agauuguggugucaCACCAAAc 5'
                        ||||||| 
Target 5' -------------aGUGGUUUu 3'
1 - 9
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000299608.2 | 3UTR | AGUGGUUUUAUUUUGUUAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.578 1.5e-3 -0.476 9.4e-3 24 Click to see details
GSE19350 CNS germ cell tumors -0.702 5.5e-3 -0.014 4.8e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells 0.499 6.5e-3 0.390 3.0e-2 24 Click to see details
GSE32688 Pancreatic cancer -0.204 1.3e-1 -0.177 1.7e-1 32 Click to see details
GSE38226 Liver fibrosis 0.252 1.4e-1 0.286 1.0e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.176 2.0e-1 0.254 1.1e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.108 3.1e-1 -0.376 3.9e-2 23 Click to see details
GSE21687 Ependynoma primary tumors -0.023 4.3e-1 -0.061 3.2e-1 64 Click to see details
GSE28260 Renal cortex and medulla 0.036 4.5e-1 0.251 2.0e-1 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.004 4.9e-1 -0.334 7.5e-2 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.004 4.9e-1 -0.334 7.5e-2 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.004 4.9e-1 -0.334 7.5e-2 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUAD -0.957 0.02 -0.800 0.1 4 Click to see details
LIHC -0.262 0.08 -0.039 0.42 30 Click to see details
PRAD -0.198 0.09 -0.218 0.07 46 Click to see details
PAAD 0.744 0.13 0.800 0.1 4 Click to see details
LUSC 0.203 0.14 0.204 0.14 30 Click to see details
THCA -0.159 0.15 -0.106 0.24 45 Click to see details
ESCA 0.308 0.19 0.248 0.24 10 Click to see details
HNSC 0.112 0.33 0.038 0.44 18 Click to see details
BLCA -0.26 0.37 0.000 0.5 4 Click to see details
BRCA 0.04 0.4 0.115 0.23 42 Click to see details
KIRP 0.045 0.42 0.101 0.33 21 Click to see details
UCEC 0.037 0.45 0.015 0.48 16 Click to see details
KIRC 0.02 0.45 0.067 0.33 43 Click to see details
CHOL 0.045 0.47 -0.200 0.35 6 Click to see details
KICH -0.022 0.47 -0.207 0.23 15 Click to see details
STAD 0.01 0.48 -0.047 0.42 21 Click to see details
STAD 0.01 0.48 -0.047 0.42 21 Click to see details
STAD 0.01 0.48 -0.047 0.42 21 Click to see details
STAD 0.01 0.48 -0.047 0.42 21 Click to see details
95 hsa-miR-497-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092955 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT124568 PRRC2B proline rich coiled-coil 2B 2 2
MIRT125196 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT147296 KPNA2 karyopherin subunit alpha 2 2 8
MIRT163999 KIAA1109 KIAA1109 2 4
MIRT252495 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT357969 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT443007 TRIOBP TRIO and F-actin binding protein 2 2
MIRT443524 NETO1 neuropilin and tolloid like 1 2 2
MIRT443573 EVX2 even-skipped homeobox 2 2 2
MIRT443656 BACH1 BTB domain and CNC homolog 1 2 2
MIRT460670 KRT10 keratin 10 2 8
MIRT464761 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT465032 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT465040 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT468667 SEC62 SEC62 homolog, preprotein translocation factor 2 2
MIRT473694 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT477618 EFNA3 ephrin A3 2 2
MIRT480506 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT480592 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT486915 ZNF398 zinc finger protein 398 2 6
MIRT487770 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT493265 MDFIC MyoD family inhibitor domain containing 2 2
MIRT495271 SLC1A2 solute carrier family 1 member 2 2 4
MIRT495309 CHST12 carbohydrate sulfotransferase 12 2 2
MIRT496681 DPP6 dipeptidyl peptidase like 6 2 4
MIRT496891 FOXP1 forkhead box P1 2 2
MIRT497330 IRF4 interferon regulatory factor 4 2 2
MIRT498272 KIAA1644 KIAA1644 2 2
MIRT498634 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT500581 USP53 ubiquitin specific peptidase 53 2 2
MIRT500751 TMPPE transmembrane protein with metallophosphoesterase domain 2 6
MIRT509668 ZNF354B zinc finger protein 354B 2 10
MIRT510919 PSMA2 proteasome subunit alpha 2 2 4
MIRT519118 CEP76 centrosomal protein 76 2 2
MIRT526193 ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) 2 2
MIRT526746 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527270 FBLN2 fibulin 2 2 2
MIRT528198 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT528330 TBC1D22B TBC1 domain family member 22B 2 2
MIRT530346 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT533627 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT533738 TMEM200C transmembrane protein 200C 2 2
MIRT533779 TMEM133 transmembrane protein 133 2 2
MIRT534317 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT538438 COG5 component of oligomeric golgi complex 5 2 2
MIRT539156 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT539474 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT539620 SHISA9 shisa family member 9 2 2
MIRT539650 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540346 OPHN1 oligophrenin 1 2 2
MIRT540412 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541200 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT541395 CDC27 cell division cycle 27 2 2
MIRT546443 SNX5 sorting nexin 5 2 2
MIRT547369 MSI2 musashi RNA binding protein 2 2 2
MIRT553288 TSPAN3 tetraspanin 3 2 2
MIRT554402 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT557822 FOXN2 forkhead box N2 2 2
MIRT568530 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT569508 THYN1 thymocyte nuclear protein 1 2 2
MIRT570707 FAM69A family with sequence similarity 69 member A 2 2
MIRT608376 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608483 NKTR natural killer cell triggering receptor 2 6
MIRT613533 TRA2B transformer 2 beta homolog 2 2
MIRT616601 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT618166 DUSP18 dual specificity phosphatase 18 2 2
MIRT632059 CEP135 centrosomal protein 135 2 2
MIRT647379 ZDHHC23 zinc finger DHHC-type containing 23 2 2
MIRT648366 POTED POTE ankyrin domain family member D 2 2
MIRT651075 ZNF518B zinc finger protein 518B 2 4
MIRT653618 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653636 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654895 POU2F1 POU class 2 homeobox 1 2 2
MIRT656232 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT659880 CAPRIN1 cell cycle associated protein 1 2 2
MIRT660526 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT666286 SLC30A3 solute carrier family 30 member 3 2 2
MIRT686808 SNX2 sorting nexin 2 2 4
MIRT695302 TK1 thymidine kinase 1 2 2
MIRT699737 SERINC3 serine incorporator 3 2 2
MIRT700794 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT712270 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT712617 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT714264 RPL10A ribosomal protein L10a 2 2
MIRT715072 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715386 TADA3 transcriptional adaptor 3 2 2
MIRT716397 NPAS1 neuronal PAS domain protein 1 2 2
MIRT725328 NFASC neurofascin 2 2
MIRT725503 GANAB glucosidase II alpha subunit 2 2
MIRT732913 IRAK2 interleukin 1 receptor associated kinase 2 3 0
MIRT734890 SMAD3 SMAD family member 3 3 0
MIRT737328 LINC02476 long intergenic non-protein coding RNA 2476 3 0
MIRT737544 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 4 0
MIRT755545 PAK1 p21 (RAC1) activated kinase 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-497 Bufalin NULL 9547215 Quantitative real-time PCR colorectal cancer HCT116 cells 24375248 2014 up-regulated
miR-497 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 up-regulated
miR-497 Ethanol NULL 702 Quantitative real-time PCR CIE10 22141737 2012 up-regulated
miR-497 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 up-regulated
miR-497 Reversine NULL 210332 Microarray C2C12 myoblast cells 24513286 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-497 Tamoxifen 2733525 NSC180973 approved sensitive Low Breast Cancer cell line (MCF-7, T47D)
hsa-mir-497 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-497 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-497 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-497 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-497-3p Mitoxantrone 4212 NSC279836 approved sensitive High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-497-3p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, PC-9)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant Low Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-497-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-497-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant tissue
hsa-miR-497-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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