pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol TMX3   
Synonyms PDIA13, TXNDC10
Description thioredoxin related transmembrane protein 3
Transcript NM_019022   
Expression
Putative miRNA Targets on TMX3
3'UTR of TMX3
(miRNA target sites are highlighted)
>TMX3|NM_019022|3'UTR
   1 GACTTGATGACTATAAAATATTTGTTAGGACTTCAAATTATTAAAGAGTCTATTTATTGAATTTAGACATTTAATCATGA
  81 TCTTTACAGAAAAGAACATGTTATTCGTATTTTGCTAATATCAACTGCATGGATTAAAGTAGTCCCTCCATACATGGGGA
 161 AGTGTTTGGAGCAAAGAGATGAACAGTTTGTCTGAAACAAACACAGAGCACTCCATCAAAATTTACCTGATCTTTGTGAT
 241 TAGAACAGAACAATTCTATTTGCATGTTTCTCTATCTGAATATTCTGTGACAAAAAGTTAAGATTCTTGGGCAGAATATT
 321 TAAATTGGTCAGTCAGGTAGAAGATACATGTGTGATATAGAAAAATAATGCCTCTCCTGCTGCCATCCGTTTCCCTCATA
 401 TATTTTGGACAAGATTTATATGGACAAAATTAAGTCTTTAAAATTTAGGCACTTTAAGGAGAACTAATAACTTTTTCCAT
 481 GTATCAAGATTATGAGGTTAAAAATAATGTGGTTTTATATAGCATAGTGGTTTTATTTTGTTAGTTATTTTTAAAGGAGA
 561 AGAAATGTTACTTTTTAACTTTATACTCAGTTGCATTATCATAAAATTTTCATATATGCCTAGATAATGGGGAAAAAAAG
 641 TCTTGTGATTGACTTTCGCAAAATAAACAGGATTTACTGAGTAGAGGTTTCAGCCCATTCCTTGGAATACTAACAGGTAT
 721 TTCATCAGTCATTGTAGGTTGGGAAGGGTCTCTGTTAATCCTACTCTGCTTTAGCCAGAATAGCCTAGTATTTTATTTCT
 801 ATTTTATATATTGAGATTTCTTCTAACATTTCCTTTGATAAAAATCTTCTGCTTTTTGAAAAGTGGTATGTATCATATTT
 881 TTATGTTTCTGGTGTGTGAACTTTATGGTAACTTCTACTCTAGAATACGTACGTATGCACCCACAGACACACACAGTTTA
 961 TTGACACATCTATTATGTAATGCTGTAGACCTGTCCGTGTCTGCTTCATAAGGAGTAACGACTGACATTAGCATGTCCAG
1041 TGACAAGTCACATCCGGTGTAAAAAAAAGAGATCAGCCAGTTACCTTCTCCATTGTCTTAGTTCTGTCACCCATTTCGTC
1121 AAGTGACCTCTCATCTTCTATAAACTAATACAGGAATTCTTTCCAAAGCAATGTCTAAAAACTCTTTTTTTTAAAGTAAC
1201 AGTTTGGTATGTTTATTGTAGATAAATTATTTTTGAGGCCTTCATTTTAGCTAAGTTTAGAATTTATATTAGGCAACTAT
1281 GATTTGAGTGGTTATTCATTGAGTAATTTTCCACTATAAAGAATTTTATTGAACATTTATTAAAAAATAATGTAATGCAT
1361 GGTCAAAAAATATGTAATTCATGGTCTGGACACTGACGTTGTTTAGGGATTTAGTCATCAAGGACAGCCCTCTGTTGTTT
1441 CTAATGCCGTACTAATCAAGACTGTATGGACACTTGCATCTTAAGTACTAAGGAATTACTAGTGATTGTTTTATTTTATC
1521 CATGTACTCTTTTAGTATTTAATAATTAAATACCTATTCTTAGTGTTTGACACTCCATATTTCTTTTTTTTGGAAATGAA
1601 ACAAATATGCAGTCCAAAATTCAGGAACTACTAGAGTGAAATGATATTAAGTGGAAACCAGAGATAAATGCTGTTAATTT
1681 AACAAGTAGATTCTTCTCCAAAGAATGATGAGTGATTCTTGGGAAGATAAATGTTAATGTTCCCAATAGTCAAGCTTGTT
1761 TTGCAGTAGTGAAAAGCTTAGATGAGTACGGATACCTCATTTGAAACTCAGCCTAGTAAGGAAGTGAAAACTTAGCAGTC
1841 AGTGACATGGGGAAATAGTTATAGAAAATGTCACTGAATTTTTTCATATTTATAATTAGTCATTTACATATTTTTGTCTT
1921 GTTGATCATTACCTGTAAATGAAAGACCTTAATAGGAAAAAAAGAGTAAAGCTCAGTGTGAATGCAAACATCCACAAAAT
2001 ATGATCTTCGTTTATATTCTGTGATGTTGTTTATAAATGAATGCCTCAGTTCTCTGCTACCCTTTTCACAGCTTTGTACT
2081 GTTTGCCTTATATTCTATTTGTGCTTTTAAAGTGTGTCTGTTGGGAAAACAAAATGTGTAGGTGGTTTGTAAGTGAATAA
2161 TTTTTATTTCTTCTTGTATTAAAATTTTGTTTTTTTCTCTACTTTGGGAGATGTTTATTTACATTGTCAGACTATTCACA
2241 AAACAGATTCTAAAATTTGTTTGCTCGTATGCTGTTCCCTTCAATGTGATATCAGAGATTACTATGAATGTTAGTTTCAT
2321 TCCGTGAAACATTACTTCCATATAAAGACAGATCTCTTAATAAGTGAATCTAGTGGAAGAACATAGGTATCATTCTAATT
2401 CCATGGTAAATTTTGTCATGATTCTATATGAATAATGGGGTCCTTCAGGAAGTTGGAATTTTTGCCTTCTCTTTTAATTG
2481 CAGTGAAGTTCTCTTTATAACTTCTAAAATTCGGAATTCTAGATCCTTGCTTTTGCAGAATTTGGTGCTCAGACAATATT
2561 TAAGGACATTTCAGCGAGACAAAGTGCATGTTTTTATCGAGTACCCTGTGCACCACATTATATCTGGCAATTCTTTTTGT
2641 TTCATTATGTGCATCAATATTTTTCTCAGCTACTATTACCTGAAACTTGTTTAACATGTATTAGACCTAGAATTTTCATT
2721 TTCTTTCTCACATAGTTGCTTCCTGGTATCTGATTTAGAAATAACATTTAAATGCCAAGTATCTGGGGGATTGAAGGAAG
2801 GGTCTATATGAGCAGGTGAATTAGCAGTACTGTTTTTGTTTAGTGGATATTGTTAGTGACTTTTTGTGTGTGTTTTGCTT
2881 TGGGACCTTTTTATTTTGGTGTTGCAAAAAGTAACATATTTTCATCATTGCTTCATACGACATGGAGTTAGGACAGGGAA
2961 AAATCATTCAACACTCCTTATGCATTAAATGATCAAATAAACCAGTGTAGGATATTAAGACTATCAATTGGTGGGATTAG
3041 GCTTGACATTTTATTTTTATAAATATATATTTTTTCTGAATGTGTCTGAGTCCAAGAGTGGGCAAAAAATAATTTTCTAC
3121 TTTGGACTAATCTATAGAGGTTTTTGAAAGTCTGCATTACTAACTTGTTGAATTCATGATATTCTGCCTATGGCACAAAT
3201 TGTAAACCTTTGTTTTTCTAAAATAAAGTAATTGAAAACCTGCAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCACGUUUUCAUUAACACCAAAAa 5'
            || :|||| ||| ||||||||| 
Target 5' agGT-TAAAAATAA-TGTGGTTTTa 3'
495 - 517 177.00 -14.20
2
miRNA  3' accacGUUUU-CAUUAACACCAAAaa 5'
               ||||| ||:   |||||||  
Target 5' gaaaaCAAAATGTGTAGGTGGTTTgt 3'
2125 - 2150 144.00 -13.30
3
miRNA  3' acCACGUUUUCAU--UAACACCAAAAA------- 5'
            || : | | ||  || ||||||||        
Target 5' tgGTTTTATA-TAGCATAGTGGTTTTATTTTGTT 3'
510 - 542 136.00 -8.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31505303 1 COSMIC
COSN6132705 17 COSMIC
COSN30184005 21 COSMIC
COSN30461022 34 COSMIC
COSN30521815 48 COSMIC
COSN30513256 69 COSMIC
COSN31514653 87 COSMIC
COSN30494940 96 COSMIC
COSN31596848 107 COSMIC
COSN31610320 201 COSMIC
COSN17078578 276 COSMIC
COSN26749656 596 COSMIC
COSN32157809 642 COSMIC
COSN29354731 883 COSMIC
COSN5431995 1313 COSMIC
COSN18882916 1354 COSMIC
COSN17076011 1361 COSMIC
COSN26657480 1577 COSMIC
COSN29528075 1642 COSMIC
COSN9843379 1858 COSMIC
COSN24199383 2266 COSMIC
COSN6132704 2324 COSMIC
COSN1754366 2599 COSMIC
COSN29146787 2648 COSMIC
COSN19049704 3024 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1245094959 2 dbSNP
rs1270691962 3 dbSNP
rs1399071304 7 dbSNP
rs1358006146 10 dbSNP
rs776200941 12 dbSNP
rs1414930469 13 dbSNP
rs1424396281 17 dbSNP
rs1201219988 21 dbSNP
rs377534484 24 dbSNP
rs770591474 25 dbSNP
rs777290833 29 dbSNP
rs138495733 31 dbSNP
rs748084733 33 dbSNP
rs1239218855 34 dbSNP
rs309204 43 dbSNP
rs1037093073 45 dbSNP
rs1476413151 48 dbSNP
rs754788151 48 dbSNP
rs1169046020 52 dbSNP
rs1033824575 57 dbSNP
rs1404015706 59 dbSNP
rs200346443 69 dbSNP
rs1200404653 77 dbSNP
rs1456397550 82 dbSNP
rs898729484 90 dbSNP
rs1324225565 95 dbSNP
rs1432273227 95 dbSNP
rs1270770487 97 dbSNP
rs1039067807 103 dbSNP
rs1243605048 104 dbSNP
rs940119077 106 dbSNP
rs1359836306 107 dbSNP
rs1216211694 109 dbSNP
rs941671150 110 dbSNP
rs1448869605 114 dbSNP
rs570151911 121 dbSNP
rs1047432007 123 dbSNP
rs76728077 124 dbSNP
rs1185925896 127 dbSNP
rs1386293982 129 dbSNP
rs1419460277 136 dbSNP
rs1157696158 145 dbSNP
rs1382320364 147 dbSNP
rs1402017000 150 dbSNP
rs1318421239 154 dbSNP
rs1339321356 156 dbSNP
rs933026744 158 dbSNP
rs909711671 159 dbSNP
rs1317034749 161 dbSNP
rs117426990 172 dbSNP
rs953907155 175 dbSNP
rs1313572693 181 dbSNP
rs1298799195 183 dbSNP
rs751970278 205 dbSNP
rs1353112636 209 dbSNP
rs974582729 211 dbSNP
rs1278047683 212 dbSNP
rs1460015234 221 dbSNP
rs1206178380 223 dbSNP
rs943234296 226 dbSNP
rs976710074 229 dbSNP
rs979284908 234 dbSNP
rs1370669477 236 dbSNP
rs1332494102 239 dbSNP
rs34309603 248 dbSNP
rs913880239 251 dbSNP
rs566315624 253 dbSNP
rs1158745336 256 dbSNP
rs1404769464 270 dbSNP
rs1394974282 274 dbSNP
rs992133205 276 dbSNP
rs1406721323 284 dbSNP
rs1031321901 287 dbSNP
rs1297677743 302 dbSNP
rs998548848 308 dbSNP
rs1466669884 311 dbSNP
rs1337272474 315 dbSNP
rs528448868 316 dbSNP
rs1274466918 330 dbSNP
rs1321576102 332 dbSNP
rs1034204252 337 dbSNP
rs1002373744 341 dbSNP
rs181989174 349 dbSNP
rs74781301 352 dbSNP
rs1194534701 353 dbSNP
rs1010988429 356 dbSNP
rs895322092 358 dbSNP
rs1182139154 365 dbSNP
rs565562277 368 dbSNP
rs368488856 372 dbSNP
rs906516305 374 dbSNP
rs1429305630 376 dbSNP
rs879222691 382 dbSNP
rs1461452297 388 dbSNP
rs887368742 389 dbSNP
rs1398430859 397 dbSNP
rs1047414567 398 dbSNP
rs1302847435 398 dbSNP
rs147106059 400 dbSNP
rs1225521439 401 dbSNP
rs901588884 404 dbSNP
rs1317330582 408 dbSNP
rs1225925074 416 dbSNP
rs1253571917 420 dbSNP
rs531180346 423 dbSNP
rs943140598 426 dbSNP
rs1483971524 431 dbSNP
rs1201089607 435 dbSNP
rs765051295 439 dbSNP
rs1427390554 441 dbSNP
rs1209651586 447 dbSNP
rs1168314058 451 dbSNP
rs1374721417 458 dbSNP
rs759198948 463 dbSNP
rs1353994632 464 dbSNP
rs1310363000 474 dbSNP
rs940086478 477 dbSNP
rs1043558515 478 dbSNP
rs1407027025 479 dbSNP
rs1303950362 483 dbSNP
rs776582380 485 dbSNP
rs888495199 491 dbSNP
rs1306978930 509 dbSNP
rs1298456458 515 dbSNP
rs561041386 525 dbSNP
rs1290067666 528 dbSNP
rs1404380770 529 dbSNP
rs1224318902 530 dbSNP
rs1292039100 537 dbSNP
rs1485298253 540 dbSNP
rs775830437 544 dbSNP
rs1311154176 545 dbSNP
rs879683199 548 dbSNP
rs1361487560 556 dbSNP
rs747003143 565 dbSNP
rs1468453064 571 dbSNP
rs1363126253 576 dbSNP
rs1182868059 584 dbSNP
rs1188120797 584 dbSNP
rs796734048 590 dbSNP
rs1425511100 591 dbSNP
rs796158307 593 dbSNP
rs932449186 593 dbSNP
rs542319013 594 dbSNP
rs309203 598 dbSNP
rs977056745 605 dbSNP
rs943998126 614 dbSNP
rs1186612030 617 dbSNP
rs79541634 620 dbSNP
rs141869835 623 dbSNP
rs76386711 624 dbSNP
rs1219223593 625 dbSNP
rs1349038548 628 dbSNP
rs968356664 628 dbSNP
rs1021294353 633 dbSNP
rs1247173747 634 dbSNP
rs951589017 637 dbSNP
rs1029956457 640 dbSNP
rs1260525829 640 dbSNP
rs309202 645 dbSNP
rs556153733 646 dbSNP
rs756339679 657 dbSNP
rs746037888 658 dbSNP
rs1033873527 660 dbSNP
rs1004197796 682 dbSNP
rs1183971610 689 dbSNP
rs1406897947 694 dbSNP
rs1417579020 701 dbSNP
rs1161500661 705 dbSNP
rs1345916301 717 dbSNP
rs1469345406 719 dbSNP
rs1291502780 732 dbSNP
rs1408952128 735 dbSNP
rs906824824 744 dbSNP
rs1297989243 752 dbSNP
rs1371581846 756 dbSNP
rs1221752896 758 dbSNP
rs1308663311 759 dbSNP
rs151131158 762 dbSNP
rs1222369730 766 dbSNP
rs1260627408 776 dbSNP
rs1462605621 780 dbSNP
rs1210665185 781 dbSNP
rs1232118221 785 dbSNP
rs1341336051 801 dbSNP
rs1004183484 808 dbSNP
rs888463997 816 dbSNP
rs1048485477 820 dbSNP
rs541596462 827 dbSNP
rs1043527740 833 dbSNP
rs932775373 843 dbSNP
rs189138221 845 dbSNP
rs781567879 847 dbSNP
rs1480196185 849 dbSNP
rs1174387693 850 dbSNP
rs1383910692 851 dbSNP
rs1470607968 872 dbSNP
rs899651139 898 dbSNP
rs1170323890 905 dbSNP
rs1353170692 907 dbSNP
rs1444795130 908 dbSNP
rs371498654 910 dbSNP
rs945235427 915 dbSNP
rs913819680 918 dbSNP
rs184472303 919 dbSNP
rs375015296 923 dbSNP
rs1415676662 927 dbSNP
rs926579629 928 dbSNP
rs924491246 929 dbSNP
rs1272190677 932 dbSNP
rs977314570 933 dbSNP
rs941415146 939 dbSNP
rs1163570300 940 dbSNP
rs1252206757 941 dbSNP
rs554937684 947 dbSNP
rs370262513 955 dbSNP
rs1224418965 956 dbSNP
rs1271193097 956 dbSNP
rs909989411 956 dbSNP
rs982944499 970 dbSNP
rs1264844780 972 dbSNP
rs947023466 974 dbSNP
rs914255605 976 dbSNP
rs1171573678 977 dbSNP
rs552608273 979 dbSNP
rs1365284522 981 dbSNP
rs1423637838 996 dbSNP
rs991625567 997 dbSNP
rs1346913224 1005 dbSNP
rs977367901 1008 dbSNP
rs773833942 1014 dbSNP
rs958518507 1015 dbSNP
rs534408223 1019 dbSNP
rs1007256098 1020 dbSNP
rs1034263308 1033 dbSNP
rs982264930 1044 dbSNP
rs1452323183 1046 dbSNP
rs998655903 1046 dbSNP
rs970894961 1055 dbSNP
rs576916778 1056 dbSNP
rs751928582 1057 dbSNP
rs75597067 1068 dbSNP
rs1189725644 1069 dbSNP
rs1161358649 1071 dbSNP
rs1443138622 1071 dbSNP
rs939244118 1071 dbSNP
rs1367058428 1076 dbSNP
rs1428823587 1083 dbSNP
rs1326079089 1087 dbSNP
rs1342889050 1090 dbSNP
rs1323964154 1099 dbSNP
rs1388364312 1101 dbSNP
rs1004487421 1106 dbSNP
rs952672370 1107 dbSNP
rs1027016560 1109 dbSNP
rs566154986 1117 dbSNP
rs758941454 1118 dbSNP
rs17079542 1122 dbSNP
rs1474872664 1124 dbSNP
rs1282278818 1127 dbSNP
rs1448776231 1132 dbSNP
rs539200981 1133 dbSNP
rs1243070253 1138 dbSNP
rs1185831437 1140 dbSNP
rs1443254856 1140 dbSNP
rs1369368502 1141 dbSNP
rs1008026130 1145 dbSNP
rs1157601872 1149 dbSNP
rs1405227763 1151 dbSNP
rs1199999593 1152 dbSNP
rs903035701 1159 dbSNP
rs1470140115 1167 dbSNP
rs1450284828 1170 dbSNP
rs1251554894 1177 dbSNP
rs1340799767 1182 dbSNP
rs1041592381 1184 dbSNP
rs941407179 1185 dbSNP
rs909958883 1186 dbSNP
rs1353003876 1190 dbSNP
rs7231899 1192 dbSNP
rs914223116 1193 dbSNP
rs930047060 1193 dbSNP
rs1055506781 1194 dbSNP
rs1257349881 1196 dbSNP
rs17079540 1199 dbSNP
rs1180720181 1201 dbSNP
rs1018552117 1205 dbSNP
rs986198386 1209 dbSNP
rs967722675 1210 dbSNP
rs1427928421 1218 dbSNP
rs1021925427 1221 dbSNP
rs1009234751 1232 dbSNP
rs892235660 1233 dbSNP
rs17079538 1239 dbSNP
rs1003408870 1244 dbSNP
rs981613247 1258 dbSNP
rs1235108110 1259 dbSNP
rs1045021736 1272 dbSNP
rs1410618013 1272 dbSNP
rs1321462356 1274 dbSNP
rs970862330 1278 dbSNP
rs908735112 1281 dbSNP
rs1339215718 1285 dbSNP
rs1047111937 1299 dbSNP
rs1253027245 1305 dbSNP
rs930016071 1307 dbSNP
rs922739465 1309 dbSNP
rs762654104 1311 dbSNP
rs983019652 1311 dbSNP
rs144939224 1316 dbSNP
rs942921437 1318 dbSNP
rs1326259731 1320 dbSNP
rs1461372061 1338 dbSNP
rs111665238 1342 dbSNP
rs1408913273 1343 dbSNP
rs1430694129 1348 dbSNP
rs911456628 1348 dbSNP
rs1302758383 1349 dbSNP
rs187140851 1351 dbSNP
rs1388589810 1357 dbSNP
rs968946754 1358 dbSNP
rs979003370 1358 dbSNP
rs753506161 1361 dbSNP
rs1173926528 1364 dbSNP
rs914886901 1370 dbSNP
rs879451048 1374 dbSNP
rs1343281337 1376 dbSNP
rs527415624 1379 dbSNP
rs1205488409 1382 dbSNP
rs1290564105 1388 dbSNP
rs559802487 1389 dbSNP
rs1489675708 1391 dbSNP
rs544822795 1397 dbSNP
rs1440843730 1398 dbSNP
rs1190899433 1403 dbSNP
rs1235158897 1404 dbSNP
rs1449836193 1405 dbSNP
rs964398294 1407 dbSNP
rs1163257482 1408 dbSNP
rs184511218 1409 dbSNP
rs1459584189 1416 dbSNP
rs1294215032 1421 dbSNP
rs1384292215 1422 dbSNP
rs969214210 1425 dbSNP
rs1023891284 1431 dbSNP
rs1366446110 1436 dbSNP
rs144059283 1437 dbSNP
rs1245694358 1440 dbSNP
rs1005448699 1448 dbSNP
rs218286 1449 dbSNP
rs1047081055 1451 dbSNP
rs1485246830 1459 dbSNP
rs760438817 1460 dbSNP
rs573874795 1464 dbSNP
rs1336803595 1469 dbSNP
rs745359305 1469 dbSNP
rs1302404818 1470 dbSNP
rs994193893 1472 dbSNP
rs901252202 1476 dbSNP
rs1182771445 1477 dbSNP
rs1383096816 1484 dbSNP
rs1240669158 1488 dbSNP
rs113263300 1490 dbSNP
rs1363347173 1491 dbSNP
rs1451704515 1520 dbSNP
rs1323216811 1521 dbSNP
rs903004438 1524 dbSNP
rs554692010 1525 dbSNP
rs1417157486 1532 dbSNP
rs1011447689 1535 dbSNP
rs893016964 1536 dbSNP
rs1441430232 1542 dbSNP
rs1381757718 1543 dbSNP
rs565534057 1545 dbSNP
rs773049092 1546 dbSNP
rs35374224 1555 dbSNP
rs1056127482 1559 dbSNP
rs1335640184 1566 dbSNP
rs1315885961 1579 dbSNP
rs936996093 1583 dbSNP
rs551320255 1592 dbSNP
rs771905456 1596 dbSNP
rs536631137 1599 dbSNP
rs761677719 1604 dbSNP
rs1045467869 1608 dbSNP
rs940450342 1617 dbSNP
rs1484097352 1622 dbSNP
rs1182719605 1626 dbSNP
rs1417485741 1643 dbSNP
rs1161478412 1649 dbSNP
rs572586395 1658 dbSNP
rs982987006 1660 dbSNP
rs1174876767 1665 dbSNP
rs1175953160 1675 dbSNP
rs1449213521 1682 dbSNP
rs952859590 1687 dbSNP
rs111798343 1693 dbSNP
rs1372179354 1698 dbSNP
rs774215225 1700 dbSNP
rs1456438319 1707 dbSNP
rs956405613 1708 dbSNP
rs1385949803 1709 dbSNP
rs554279215 1710 dbSNP
rs920155434 1716 dbSNP
rs976082663 1726 dbSNP
rs1313805206 1729 dbSNP
rs1210563727 1730 dbSNP
rs964052718 1738 dbSNP
rs1238055512 1742 dbSNP
rs1190233554 1745 dbSNP
rs1020054428 1746 dbSNP
rs771326271 1751 dbSNP
rs981843027 1755 dbSNP
rs969560909 1757 dbSNP
rs986830930 1772 dbSNP
rs536012591 1780 dbSNP
rs539238050 1789 dbSNP
rs952588804 1790 dbSNP
rs1318463184 1794 dbSNP
rs192725085 1815 dbSNP
rs901140719 1816 dbSNP
rs1011333538 1821 dbSNP
rs1309442493 1822 dbSNP
rs773795496 1832 dbSNP
rs892975294 1836 dbSNP
rs1379814067 1837 dbSNP
rs1272506002 1842 dbSNP
rs1294591745 1847 dbSNP
rs1006953674 1855 dbSNP
rs1412448199 1861 dbSNP
rs889883378 1862 dbSNP
rs1339780224 1870 dbSNP
rs879409429 1872 dbSNP
rs1275616642 1873 dbSNP
rs375156723 1878 dbSNP
rs1219485901 1879 dbSNP
rs187438862 1883 dbSNP
rs1001882065 1886 dbSNP
rs538205015 1888 dbSNP
rs184123199 1897 dbSNP
rs1186409010 1903 dbSNP
rs1417873103 1906 dbSNP
rs1401500851 1913 dbSNP
rs1170163243 1916 dbSNP
rs1370791724 1919 dbSNP
rs906856773 1920 dbSNP
rs548740682 1931 dbSNP
rs772009419 1945 dbSNP
rs947582317 1951 dbSNP
rs1351086287 1953 dbSNP
rs1045458832 1959 dbSNP
rs1288204130 1961 dbSNP
rs940419006 1962 dbSNP
rs1230348620 1964 dbSNP
rs568682975 1967 dbSNP
rs527261230 1969 dbSNP
rs1226784893 1972 dbSNP
rs1292164422 1976 dbSNP
rs199833080 1985 dbSNP
rs77544781 1987 dbSNP
rs1215771338 1990 dbSNP
rs1246719149 1996 dbSNP
rs17079529 2002 dbSNP
rs1189624377 2003 dbSNP
rs532852632 2009 dbSNP
rs931469210 2014 dbSNP
rs920105118 2019 dbSNP
rs528575139 2024 dbSNP
rs942972322 2027 dbSNP
rs1194595861 2032 dbSNP
rs1316937094 2041 dbSNP
rs912554348 2056 dbSNP
rs1386380348 2059 dbSNP
rs986726119 2061 dbSNP
rs967362241 2080 dbSNP
rs1437134582 2081 dbSNP
rs146728097 2090 dbSNP
rs916357256 2095 dbSNP
rs1446149185 2097 dbSNP
rs1214895134 2101 dbSNP
rs990214291 2104 dbSNP
rs143433197 2105 dbSNP
rs957210462 2111 dbSNP
rs1034626273 2112 dbSNP
rs1331866952 2118 dbSNP
rs1001451929 2128 dbSNP
rs907154226 2134 dbSNP
rs952558244 2144 dbSNP
rs1230896178 2151 dbSNP
rs1242974948 2160 dbSNP
rs1024230568 2164 dbSNP
rs1185047498 2166 dbSNP
rs1333479869 2170 dbSNP
rs1472891534 2176 dbSNP
rs1004516922 2177 dbSNP
rs886118805 2178 dbSNP
rs972606323 2181 dbSNP
rs1278305552 2190 dbSNP
rs1215907667 2194 dbSNP
rs1048818486 2195 dbSNP
rs930411097 2196 dbSNP
rs1405152884 2197 dbSNP
rs965694112 2197 dbSNP
rs1412536750 2203 dbSNP
rs898649204 2205 dbSNP
rs1335859379 2207 dbSNP
rs563927235 2208 dbSNP
rs1040307601 2213 dbSNP
rs112287346 2217 dbSNP
rs1019584008 2222 dbSNP
rs1287470074 2230 dbSNP
rs747398189 2234 dbSNP
rs753575177 2236 dbSNP
rs1343406555 2244 dbSNP
rs1007333472 2247 dbSNP
rs1279728650 2248 dbSNP
rs1442678449 2254 dbSNP
rs1180969269 2259 dbSNP
rs778134619 2262 dbSNP
rs889861617 2266 dbSNP
rs758844181 2267 dbSNP
rs753208250 2273 dbSNP
rs1376999716 2275 dbSNP
rs561981614 2278 dbSNP
rs1053232486 2284 dbSNP
rs544127076 2287 dbSNP
rs938916838 2294 dbSNP
rs946028631 2303 dbSNP
rs1306393121 2314 dbSNP
rs913261277 2323 dbSNP
rs370538310 2324 dbSNP
rs1417711556 2331 dbSNP
rs957722421 2339 dbSNP
rs1236024251 2340 dbSNP
rs1275854118 2345 dbSNP
rs1339117554 2349 dbSNP
rs1046047335 2353 dbSNP
rs1254695229 2356 dbSNP
rs947751051 2364 dbSNP
rs1467991350 2366 dbSNP
rs372903516 2369 dbSNP
rs1483791350 2372 dbSNP
rs927146627 2376 dbSNP
rs1265996557 2382 dbSNP
rs980304586 2388 dbSNP
rs971262938 2402 dbSNP
rs1024199276 2404 dbSNP
rs190750764 2407 dbSNP
rs1305376004 2409 dbSNP
rs1392271569 2411 dbSNP
rs916326043 2420 dbSNP
rs572423540 2426 dbSNP
rs1388634271 2431 dbSNP
rs1389086782 2433 dbSNP
rs950343000 2450 dbSNP
rs1365003798 2456 dbSNP
rs202036252 2473 dbSNP
rs144262274 2476 dbSNP
rs869101903 2476 dbSNP
rs530460496 2477 dbSNP
rs1228630609 2478 dbSNP
rs1027351437 2483 dbSNP
rs76603743 2487 dbSNP
rs760374046 2488 dbSNP
rs1038792157 2489 dbSNP
rs1267978841 2490 dbSNP
rs1007443008 2492 dbSNP
rs1186471892 2505 dbSNP
rs77770447 2512 dbSNP
rs1450370732 2515 dbSNP
rs139619503 2522 dbSNP
rs767290899 2525 dbSNP
rs1463636745 2535 dbSNP
rs1021582111 2545 dbSNP
rs1352950641 2546 dbSNP
rs1433463572 2556 dbSNP
rs913227220 2557 dbSNP
rs1323001942 2561 dbSNP
rs1169966090 2568 dbSNP
rs1054904341 2574 dbSNP
rs150599074 2575 dbSNP
rs555614881 2576 dbSNP
rs1003476050 2580 dbSNP
rs61166048 2582 dbSNP
rs1045076204 2584 dbSNP
rs1328431173 2584 dbSNP
rs1196995681 2586 dbSNP
rs774312593 2590 dbSNP
rs768558262 2598 dbSNP
rs971196309 2604 dbSNP
rs566169349 2610 dbSNP
rs550957387 2613 dbSNP
rs1250291868 2622 dbSNP
rs1411275707 2624 dbSNP
rs1048110013 2633 dbSNP
rs1161973280 2639 dbSNP
rs1389912628 2646 dbSNP
rs1465859555 2647 dbSNP
rs1301402061 2649 dbSNP
rs532889701 2650 dbSNP
rs1397378132 2667 dbSNP
rs1385612117 2675 dbSNP
rs1293420661 2679 dbSNP
rs918370515 2683 dbSNP
rs983352843 2685 dbSNP
rs17079526 2696 dbSNP
rs943910580 2700 dbSNP
rs1317372436 2701 dbSNP
rs1209175520 2703 dbSNP
rs1253972900 2706 dbSNP
rs1027320355 2722 dbSNP
rs1232633403 2723 dbSNP
rs1182633036 2732 dbSNP
rs1251233324 2734 dbSNP
rs1471643688 2736 dbSNP
rs994870084 2742 dbSNP
rs1413362398 2745 dbSNP
rs964423829 2746 dbSNP
rs1017749274 2752 dbSNP
rs1393677772 2755 dbSNP
rs1008673633 2756 dbSNP
rs1313100328 2761 dbSNP
rs79329274 2766 dbSNP
rs1297698347 2775 dbSNP
rs1435500408 2776 dbSNP
rs187481133 2783 dbSNP
rs1289613891 2785 dbSNP
rs148723978 2806 dbSNP
rs1433908815 2809 dbSNP
rs1218531281 2812 dbSNP
rs892009040 2815 dbSNP
rs1183836103 2816 dbSNP
rs990137038 2824 dbSNP
rs1274185135 2829 dbSNP
rs956104736 2831 dbSNP
rs1207411557 2832 dbSNP
rs1032211744 2837 dbSNP
rs1488464198 2838 dbSNP
rs1189963923 2841 dbSNP
rs540492759 2842 dbSNP
rs1434118813 2853 dbSNP
rs1168282372 2860 dbSNP
rs935970404 2861 dbSNP
rs8098944 2864 dbSNP
rs1023136217 2867 dbSNP
rs1354578241 2868 dbSNP
rs1013563290 2874 dbSNP
rs1182002971 2874 dbSNP
rs1435731345 2879 dbSNP
rs1044856054 2887 dbSNP
rs1486440316 2894 dbSNP
rs541730569 2899 dbSNP
rs1209140898 2911 dbSNP
rs546417550 2912 dbSNP
rs1261705733 2913 dbSNP
rs1241735250 2916 dbSNP
rs529977301 2920 dbSNP
rs1230847843 2924 dbSNP
rs1273865138 2925 dbSNP
rs1321186866 2927 dbSNP
rs142690013 2930 dbSNP
rs1248974054 2931 dbSNP
rs559277232 2937 dbSNP
rs560498188 2938 dbSNP
rs983321873 2939 dbSNP
rs1162432940 2957 dbSNP
rs1246528463 2958 dbSNP
rs545416639 2963 dbSNP
rs578065413 2964 dbSNP
rs929125573 2966 dbSNP
rs1419681081 2967 dbSNP
rs920480106 2969 dbSNP
rs896906534 2972 dbSNP
rs1351559958 2973 dbSNP
rs973364630 2984 dbSNP
rs1319691519 2988 dbSNP
rs1441496732 2988 dbSNP
rs778021727 2999 dbSNP
rs556578490 3003 dbSNP
rs943802086 3004 dbSNP
rs1270988014 3010 dbSNP
rs1355830930 3014 dbSNP
rs544480168 3015 dbSNP
rs1049593644 3021 dbSNP
rs932556248 3031 dbSNP
rs1208614308 3035 dbSNP
rs574147178 3036 dbSNP
rs954501652 3041 dbSNP
rs1385328178 3042 dbSNP
rs182798710 3059 dbSNP
rs1466519303 3064 dbSNP
rs772526082 3066 dbSNP
rs748496534 3067 dbSNP
rs1472227356 3068 dbSNP
rs555528912 3069 dbSNP
rs1010327413 3071 dbSNP
rs550827823 3076 dbSNP
rs1158319841 3082 dbSNP
rs1164982711 3086 dbSNP
rs1458623499 3086 dbSNP
rs1318662726 3088 dbSNP
rs1475925915 3088 dbSNP
rs1254821513 3090 dbSNP
rs1186721245 3094 dbSNP
rs1446033829 3095 dbSNP
rs1447236902 3099 dbSNP
rs891976337 3101 dbSNP
rs1356142442 3103 dbSNP
rs1228380700 3109 dbSNP
rs534252288 3111 dbSNP
rs1262789404 3117 dbSNP
rs1033654830 3120 dbSNP
rs1206104164 3127 dbSNP
rs1000475483 3129 dbSNP
rs905845753 3132 dbSNP
rs924642850 3134 dbSNP
rs1485173427 3139 dbSNP
rs1207560430 3141 dbSNP
rs1259078167 3153 dbSNP
rs1475248245 3156 dbSNP
rs1260691329 3172 dbSNP
rs1180748041 3176 dbSNP
rs541246820 3176 dbSNP
rs1409687308 3181 dbSNP
rs1471094848 3182 dbSNP
rs1158958792 3189 dbSNP
rs113513963 3190 dbSNP
rs1044434751 3193 dbSNP
rs1336383889 3204 dbSNP
rs950108903 3205 dbSNP
rs1409290264 3228 dbSNP
rs981894156 3228 dbSNP
rs895862740 3230 dbSNP
rs1047849325 3232 dbSNP
rs1286468542 3232 dbSNP
rs929102838 3235 dbSNP
rs1274684572 3239 dbSNP
rs1343298204 3244 dbSNP
rs920464844 3245 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 54495.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguuuucauuaaCACCAAAAa 5'
                          |||||||| 
Target 5' ---------------aGUGGUUUUa 3'
1 - 10
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000299608.2 | 3UTR | AGUGGUUUUAUUUUGUUAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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