pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM30A   
Synonyms C6orf67, CDC50A
Description transmembrane protein 30A
Transcript NM_001143958   
Other Transcripts NM_018247   
Expression
Putative miRNA Targets on TMEM30A
3'UTR of TMEM30A
(miRNA target sites are highlighted)
>TMEM30A|NM_001143958|3'UTR
   1 TTTTATATTATGAAAGCAAATCATCTGCATGTGCATCAAGGCCAGTCCTATTCAACCTAGCTTTCGAATGCTGATATCTG
  81 GTTAGTATGTCATTTTGAAGTTGGCACATAACTTTTCTAAAAAAAAGCAGTCTTTGTTGTTTGCTTCTTCCCTACGGATG
 161 ACTTCTAAAAATATATGACGGGTATAAAAAAATTAGCTATATTGATCATATCAACACTGTAACTGCTGAAATGGCATTCT
 241 AATGTTTGCTTTTTATTCGGACAGGCCACATGATGCATAGAGCCTCTTTCATGTGACTTGTGTCTACTGCTTAAATCTTT
 321 ATGCTGTGTTGATGATATTATATTGACATATGAAGCTGTATATGTGTATGTATTTTGTGGAGAAAGGGATTACAAGATGT
 401 ATGAGTATAATGACTTGCTAACCTTTCAGGATTCAGAGAAAGATGAAGAAAGACCATATCTAAATAATACACTTCATCAT
 481 TTTCATGTGTATAAATGCTTAAAGTACCATCTTTGTTGAGGTGGTTCATGTATCCAGTTTATCCAGTACAGTTATTTGTC
 561 AAGCTTAGCTTTGATTTCAAAGGACACGCTTACCTTGTCTGGCATAAGAATTAATGCTCATGTCTGCAGTGGTTGGGTAG
 641 GTCCTGCTTAGGAGAATTAAAAAATTCCTCTTTCCGTTTGGTTGAATGTTGCAGTCAGGAACCCCAACTCACTTGGAATG
 721 TTTTTATATGTAATCATTTCCCTTGAAGCTTATACTTTATAAGGGAAGAAAGAATTCAGGTGATATGGGAAAACTGCTTG
 801 GCAGACCTTCATCTTCTGCCTCAACTGTAAACCACATGTAAGTGCTTAATGGAGACTGTTTTCATTCTTGTGATATTTAA
 881 CATTCAGAAAATTACTTCAGCTTTGGAAATACTCAGGCTGTTTTTATTCTGCAGGTAAGTGTTTTGACTTAAGTACTAAT
 961 ATTCCAGAAATTTTTGAAAGCAGTAACCTTAATTTCCTATGTATTTCATTCCACTTTTGCATATAGGTCAAATAGCAATG
1041 TGTATGCACATTCTCTTTAGTTAAGGCACCAATTGTTTTGGTTGGTTTTCCTAAGACATACTTTAAAAAGATGTTCTATA
1121 AATTTCCTAATTAAATTATGGGGATTTTGGAGTATGTACATGATAAATTATAATATGTATATGGTTGAAGTTATTTTATT
1201 TTTTACTAATGAATTATTTTAATATTCCTTATTGAATAAATGCTGTAACTTGTTTGCTATGGAACTTATTCTTAAAGTTC
1281 TAGTTAAAAATAATTTTTCCACATGCATGAAAATATGTATTAATCAGAGGTGGCTTAATTACATTGAAATTGCTTTTTTG
1361 TTGTTGTTTTTTTACTGAAATAACTCATGTTTGTGTAGAAGAATGCCTGTTTACTCAGAGTTTATATTTTCCTTCAGTTA
1441 TATTTTAAATCAAAAGGTCTGGGTAATGTATACTTTTGATTAATATATACTTTTTTTAAAAAACAAAAAACAATGTAATG
1521 GTTAATAGTAGAAATGTGCCACACTTTTCAAGTTTTATATAACATATGAAATTCAGTTAAAAGAATGTGTGTTTCATAAT
1601 GACTTTTAACTGGTAAAAATATTACTTGCACGAAGTACTTGATGTATGGTTATCCTGAAATTTCGGAGTATTTGGTGTGT
1681 TCTTTGTCTAAAAATAGTCTGTTTTGTCAGTCCTTCAGAATATTATTTATTCTGAAGATTGTCCCTCTTGCACTTGGCAG
1761 TTTATTTTCGGGGATACATTGTTGGGGGAGAGGGGTTTCTGCCACTCTTTCCAGATTGAGTCTGTGCTGTTTAAGGAGGA
1841 CTACCATCCTGCAACTCTTTTTCTAACTGGGGCACAGAGGATGTCGCTAAAGAAAAGTTGAAGAGCCCTTTCAGCACTTT
1921 CTCATCTGTGGAGAAGATGGAATCTTAAAATACATTTGGAGTTTTATCTGTTTTACAAGTCCATTGATGGCCTAAGTTCC
2001 TCCTGTTTTCTGCTGTTTGATCTCTAAGGAACTCCTGTTGCTAAATATGAAGAGTATGGAACATTCGTATAGTCTCTGTG
2081 AAGCATGGGGGGAGGGAAGACATTTCTTTTTCTTATAGGCTTTATGCTCAAATGTCATAGTCTCCTTTCAAAGAATTGTG
2161 TTGCATTTTAAATGCACCCAGCTTAAGTAGAAGACATTGAAGGATGCATTAATTTTCAGGAACTATTTTGAATTATGAAA
2241 AGATTCCCAATTGAAAAAATTATTCAACAAGTAAAAGCTAAGAAATTTCATTGAAATCATAAGGCAGTTTAAGCATAAAT
2321 TGATAAAAATAGCTGTGTACTACTAATTAATAGAAAATCATTCAACCAAGAGAAGAGTCAAGTGAATATCGTTTGTTTAT
2401 TTGCTAGTGAGTTTCTTTGTAACGTTGATTTTATTAAATGATAATATTTGGTTAGTATGTCCTATGTTAATAAAAATGAA
2481 CAAAATTAATTTTGCTATGTTCAGGTGTCTTGATAAAATAACAATGCTCCAGTGTTGTTGCTTACATTTAGCACTAAATT
2561 TTAACACAGCGTCAGTGAGTCCAGGTTTTAACTTCTTCATGCCTGGATGGGATAAAATGTAATTCATTGTTAAATTAATT
2641 CATATTTGTATTTATTAATCACTGTGACAACATTAACCATTTGTTCTTACCAGGAAGTGGTCAGATTATCATCTGAGTTA
2721 CAGTTAGACTGGCTAAGTTTGGTATTAGATCAAGGGGAATGTCCAGTAAACAGAGAGGTAAGCATGATGGAAATAATGAA
2801 GTGGGGTACACAGGAAAAACCTGACTAGTGAGGAGGAGCAGCTGAGAGATAGGGTCAGTGAATGCGGTTCAGCCTGCTAC
2881 CTCTCCTGTCTTCATAGAACCATTGCCTTAGAATTATTGTATGACACATTTTTTGTTGGTTAAGCTGTAAGGTTTTGTTC
2961 TTTGTGAACATGGGTATTTTGAGGGGAGGGTGGAGGGAGTAGGGAAGTGGTCCTTTTACAAGAATTTTGATGCATAAGTG
3041 TCTATTGTAGGGTTTGGATGATCTAGTAAAGTGTTTTAGAACCCCTTTTTATCCCATGCACCATTCAGTAAACATAAAAA
3121 TCACAATTCTGCTAATGTCATTTGGAACTTCAAAATAAATATCTTGTCTAAAAACAAATC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccuACGUUUAAAAu 5'
                 | |||:|||| 
Target 5' cacacttTTCAAGTTTTa 3'
1540 - 1557 131.00 -5.50
2
miRNA  3' aggaCCUACGU--UUAAAAu 5'
              |||||||  |||||| 
Target 5' tgaaGGATGCATTAATTTTc 3'
2198 - 2217 130.00 -10.10
3
miRNA  3' aggACCUACGUUUAAAAu 5'
             || :| ||::|||| 
Target 5' cagTGAGTCCAGGTTTTa 3'
2573 - 2590 123.00 -5.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30136301 22 COSMIC
COSN30140598 28 COSMIC
COSN31601686 65 COSMIC
COSN30102561 66 COSMIC
COSN30124370 118 COSMIC
COSN30528343 202 COSMIC
COSN26430058 218 COSMIC
COSN19584356 287 COSMIC
COSN8514757 452 COSMIC
COSN29202218 558 COSMIC
COSN28701395 594 COSMIC
COSN30175466 822 COSMIC
COSN31488251 1007 COSMIC
COSN26717055 1206 COSMIC
COSN16434402 1236 COSMIC
COSN31561420 1264 COSMIC
COSN29032386 1333 COSMIC
COSN31553621 1341 COSMIC
COSN29232228 1497 COSMIC
COSN6332210 1635 COSMIC
COSN2177412 1725 COSMIC
COSN25025457 1851 COSMIC
COSN31778515 1854 COSMIC
COSN27602408 1867 COSMIC
COSN2177410 1941 COSMIC
COSN6332209 2026 COSMIC
COSN31522011 2313 COSMIC
COSN31534136 2416 COSMIC
COSN22853895 2468 COSMIC
COSN29327343 2505 COSMIC
COSN31548670 2517 COSMIC
COSN26199921 2563 COSMIC
COSN32065190 2798 COSMIC
COSN1336925 2988 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs796402672 2 dbSNP
rs1236030901 5 dbSNP
rs1242536773 6 dbSNP
rs892231756 10 dbSNP
rs1437647971 13 dbSNP
rs1351815111 17 dbSNP
rs780117972 17 dbSNP
rs1216843234 19 dbSNP
rs750474337 21 dbSNP
rs1286051180 32 dbSNP
rs1053566132 33 dbSNP
rs1302766306 35 dbSNP
rs978427788 37 dbSNP
rs1228297196 46 dbSNP
rs932522602 48 dbSNP
rs765733202 50 dbSNP
rs921219975 55 dbSNP
rs1436025384 57 dbSNP
rs1320521631 63 dbSNP
rs936394259 65 dbSNP
rs976593727 66 dbSNP
rs1457049786 72 dbSNP
rs1322615276 77 dbSNP
rs1238733258 78 dbSNP
rs926814360 79 dbSNP
rs1437221175 95 dbSNP
rs1181257571 104 dbSNP
rs140463906 107 dbSNP
rs148293946 119 dbSNP
rs1171143842 127 dbSNP
rs145067892 127 dbSNP
rs918142813 127 dbSNP
rs1408463531 128 dbSNP
rs1015439894 131 dbSNP
rs1398682957 139 dbSNP
rs983246329 151 dbSNP
rs952798696 153 dbSNP
rs951436779 154 dbSNP
rs184104026 155 dbSNP
rs974160829 157 dbSNP
rs1219717771 175 dbSNP
rs1277984665 179 dbSNP
rs964093461 180 dbSNP
rs1002192510 182 dbSNP
rs905451644 185 dbSNP
rs558702396 190 dbSNP
rs533871535 192 dbSNP
rs954638988 193 dbSNP
rs1030222288 196 dbSNP
rs1465769732 199 dbSNP
rs1247876400 203 dbSNP
rs1194245522 208 dbSNP
rs566733488 212 dbSNP
rs1013743653 236 dbSNP
rs892600472 241 dbSNP
rs554285770 245 dbSNP
rs1426135701 257 dbSNP
rs879167500 258 dbSNP
rs191620539 259 dbSNP
rs1000658231 262 dbSNP
rs568979576 275 dbSNP
rs1279746282 276 dbSNP
rs904905613 278 dbSNP
rs934361199 282 dbSNP
rs1345298712 286 dbSNP
rs904281973 296 dbSNP
rs1343080864 300 dbSNP
rs550733541 302 dbSNP
rs1260948776 304 dbSNP
rs1047337981 306 dbSNP
rs930211725 307 dbSNP
rs532227746 313 dbSNP
rs1477833505 323 dbSNP
rs1171962900 331 dbSNP
rs188413301 334 dbSNP
rs977045436 346 dbSNP
rs1158631981 355 dbSNP
rs942794068 358 dbSNP
rs1360718921 359 dbSNP
rs1388974944 365 dbSNP
rs943985302 386 dbSNP
rs1324645048 399 dbSNP
rs1330846046 401 dbSNP
rs756240830 409 dbSNP
rs1300783818 422 dbSNP
rs1378555142 427 dbSNP
rs1240239888 428 dbSNP
rs141280962 436 dbSNP
rs146489354 443 dbSNP
rs952788950 447 dbSNP
rs763566416 455 dbSNP
rs1449478621 470 dbSNP
rs183702078 487 dbSNP
rs1192041334 488 dbSNP
rs1240247094 491 dbSNP
rs1440467264 496 dbSNP
rs980722636 497 dbSNP
rs1484512959 501 dbSNP
rs1238436734 520 dbSNP
rs1209810732 523 dbSNP
rs45596238 524 dbSNP
rs530859619 525 dbSNP
rs563333843 528 dbSNP
rs1323564210 529 dbSNP
rs1378663731 532 dbSNP
rs1206125722 534 dbSNP
rs1305697181 535 dbSNP
rs1014230926 536 dbSNP
rs1032015342 573 dbSNP
rs1341625612 583 dbSNP
rs1246948485 585 dbSNP
rs1000499712 587 dbSNP
rs112452124 588 dbSNP
rs1211583260 591 dbSNP
rs1259672575 594 dbSNP
rs577694842 604 dbSNP
rs1212782281 605 dbSNP
rs1001068528 627 dbSNP
rs904254113 635 dbSNP
rs1381188168 646 dbSNP
rs148873691 652 dbSNP
rs1425608440 655 dbSNP
rs1188926411 664 dbSNP
rs896685217 670 dbSNP
rs115000015 675 dbSNP
rs573065633 676 dbSNP
rs1173295353 680 dbSNP
rs1401416513 682 dbSNP
rs1465844045 684 dbSNP
rs1297215580 697 dbSNP
rs1393750723 717 dbSNP
rs1397255256 718 dbSNP
rs1334828832 719 dbSNP
rs554804051 720 dbSNP
rs1231316956 722 dbSNP
rs752614179 728 dbSNP
rs1318301706 739 dbSNP
rs1227031459 744 dbSNP
rs78758726 748 dbSNP
rs1484318147 752 dbSNP
rs899472802 753 dbSNP
rs371287952 760 dbSNP
rs191103014 763 dbSNP
rs535841527 777 dbSNP
rs1429965574 779 dbSNP
rs1424831927 786 dbSNP
rs1369453509 796 dbSNP
rs943917038 806 dbSNP
rs1169377579 808 dbSNP
rs866112169 810 dbSNP
rs908488336 818 dbSNP
rs942679020 833 dbSNP
rs1467200072 839 dbSNP
rs638590 842 dbSNP
rs1415080066 843 dbSNP
rs1412903132 844 dbSNP
rs766592797 849 dbSNP
rs1340960511 858 dbSNP
rs1381438431 874 dbSNP
rs1293095866 887 dbSNP
rs1314182777 899 dbSNP
rs986877815 912 dbSNP
rs931173505 914 dbSNP
rs1279741504 916 dbSNP
rs1345772070 918 dbSNP
rs1219492643 932 dbSNP
rs1264507791 935 dbSNP
rs760864862 941 dbSNP
rs1185144921 946 dbSNP
rs934063970 946 dbSNP
rs1269841080 952 dbSNP
rs538755600 953 dbSNP
rs980796249 959 dbSNP
rs988342794 967 dbSNP
rs555621826 990 dbSNP
rs1183210710 998 dbSNP
rs956658827 1009 dbSNP
rs1482837781 1021 dbSNP
rs1272596623 1022 dbSNP
rs969518972 1031 dbSNP
rs1452899798 1033 dbSNP
rs1032233644 1036 dbSNP
rs979111949 1037 dbSNP
rs1387601022 1052 dbSNP
rs1302920860 1060 dbSNP
rs1223811351 1074 dbSNP
rs917871700 1079 dbSNP
rs969067296 1081 dbSNP
rs1423341120 1084 dbSNP
rs992180634 1086 dbSNP
rs1023298417 1095 dbSNP
rs1286742600 1098 dbSNP
rs1214212188 1116 dbSNP
rs1267647544 1117 dbSNP
rs1013376391 1123 dbSNP
rs1193939638 1124 dbSNP
rs414624 1130 dbSNP
rs1452117032 1134 dbSNP
rs1179989669 1152 dbSNP
rs1408018313 1156 dbSNP
rs546883656 1160 dbSNP
rs1156797755 1165 dbSNP
rs1227658526 1169 dbSNP
rs994714035 1173 dbSNP
rs15616 1176 dbSNP
rs968179566 1177 dbSNP
rs1349453284 1179 dbSNP
rs1029183461 1182 dbSNP
rs996556319 1195 dbSNP
rs188936094 1214 dbSNP
rs1372648382 1219 dbSNP
rs1041100778 1221 dbSNP
rs1315421831 1225 dbSNP
rs1322771243 1226 dbSNP
rs868465720 1231 dbSNP
rs1213466436 1242 dbSNP
rs889820096 1242 dbSNP
rs1007931192 1259 dbSNP
rs1200101449 1262 dbSNP
rs1232997465 1263 dbSNP
rs1469159414 1269 dbSNP
rs887009287 1273 dbSNP
rs1349948244 1275 dbSNP
rs1164780754 1278 dbSNP
rs1460307079 1280 dbSNP
rs1414711092 1283 dbSNP
rs1051046025 1285 dbSNP
rs549314037 1286 dbSNP
rs1183281139 1287 dbSNP
rs184030903 1288 dbSNP
rs1472403052 1291 dbSNP
rs35676721 1291 dbSNP
rs1329766323 1302 dbSNP
rs1354070369 1306 dbSNP
rs750020044 1307 dbSNP
rs913273882 1321 dbSNP
rs1052289294 1334 dbSNP
rs1356676798 1342 dbSNP
rs919739535 1349 dbSNP
rs1193003832 1359 dbSNP
rs1320415846 1360 dbSNP
rs935136090 1360 dbSNP
rs1216007839 1363 dbSNP
rs1273247176 1366 dbSNP
rs878949103 1366 dbSNP
rs780590157 1367 dbSNP
rs925090127 1367 dbSNP
rs1201825285 1369 dbSNP
rs1246197344 1374 dbSNP
rs1431594929 1378 dbSNP
rs1044879381 1380 dbSNP
rs368256763 1386 dbSNP
rs145656334 1388 dbSNP
rs1187086502 1395 dbSNP
rs1415447119 1397 dbSNP
rs948101300 1409 dbSNP
rs1168779898 1421 dbSNP
rs918043239 1431 dbSNP
rs551326201 1440 dbSNP
rs1178355825 1447 dbSNP
rs1376106836 1455 dbSNP
rs956759663 1457 dbSNP
rs1269821173 1459 dbSNP
rs1342835676 1461 dbSNP
rs992199358 1466 dbSNP
rs960498973 1467 dbSNP
rs556304851 1470 dbSNP
rs1338357294 1474 dbSNP
rs1228713374 1477 dbSNP
rs1212384650 1484 dbSNP
rs1281881431 1488 dbSNP
rs1347929417 1495 dbSNP
rs559748543 1497 dbSNP
rs1304498082 1498 dbSNP
rs1255312849 1504 dbSNP
rs1489193244 1511 dbSNP
rs1193652850 1514 dbSNP
rs993911289 1515 dbSNP
rs114683330 1521 dbSNP
rs1017051905 1543 dbSNP
rs1434165949 1550 dbSNP
rs1367738057 1551 dbSNP
rs1363008848 1552 dbSNP
rs1292409853 1553 dbSNP
rs1007138039 1557 dbSNP
rs968292311 1558 dbSNP
rs1029129646 1559 dbSNP
rs1428261621 1563 dbSNP
rs1305145788 1566 dbSNP
rs1371179654 1567 dbSNP
rs1160372534 1568 dbSNP
rs1277500967 1574 dbSNP
rs1352779254 1575 dbSNP
rs1051111915 1596 dbSNP
rs974939756 1598 dbSNP
rs1445047949 1599 dbSNP
rs573032073 1601 dbSNP
rs192958493 1603 dbSNP
rs1453936170 1621 dbSNP
rs1019382210 1622 dbSNP
rs1382194273 1628 dbSNP
rs1470815391 1629 dbSNP
rs542980486 1631 dbSNP
rs1383320441 1643 dbSNP
rs1407431923 1649 dbSNP
rs1433962010 1664 dbSNP
rs1008297543 1665 dbSNP
rs1439647446 1666 dbSNP
rs886750189 1674 dbSNP
rs1300666637 1675 dbSNP
rs1424578045 1679 dbSNP
rs1191787389 1682 dbSNP
rs1336986732 1689 dbSNP
rs1467088511 1695 dbSNP
rs1278875591 1697 dbSNP
rs781536157 1703 dbSNP
rs1209265887 1717 dbSNP
rs925145869 1723 dbSNP
rs1273515808 1736 dbSNP
rs777449342 1739 dbSNP
rs1212012907 1751 dbSNP
rs1252801122 1752 dbSNP
rs1438443583 1753 dbSNP
rs1043540041 1758 dbSNP
rs1362574609 1760 dbSNP
rs1025284951 1769 dbSNP
rs1312357108 1770 dbSNP
rs1300026260 1773 dbSNP
rs1231348789 1777 dbSNP
rs1191573397 1784 dbSNP
rs947957905 1785 dbSNP
rs995345174 1790 dbSNP
rs575577689 1793 dbSNP
rs1044869898 1795 dbSNP
rs1435006907 1804 dbSNP
rs775023238 1807 dbSNP
rs188596310 1810 dbSNP
rs1333839956 1811 dbSNP
rs1231739759 1812 dbSNP
rs1253279701 1813 dbSNP
rs896548568 1816 dbSNP
rs11539401 1817 dbSNP
rs1056523040 1839 dbSNP
rs918244239 1842 dbSNP
rs1466773083 1843 dbSNP
rs972930517 1845 dbSNP
rs749679783 1846 dbSNP
rs1171865623 1851 dbSNP
rs1451473111 1857 dbSNP
rs1474425554 1863 dbSNP
rs538593797 1866 dbSNP
rs381141 1867 dbSNP
rs1462124792 1868 dbSNP
rs1166829417 1876 dbSNP
rs923898418 1885 dbSNP
rs979432879 1886 dbSNP
rs565777007 1889 dbSNP
rs1313385439 1892 dbSNP
rs1354645335 1912 dbSNP
rs182898992 1913 dbSNP
rs534416661 1917 dbSNP
rs1483374194 1920 dbSNP
rs954308065 1923 dbSNP
rs1014874 1926 dbSNP
rs866025197 1931 dbSNP
rs1019545563 1934 dbSNP
rs1297653874 1936 dbSNP
rs1212302584 1959 dbSNP
rs746685184 1978 dbSNP
rs1227374148 1983 dbSNP
rs1484941507 1988 dbSNP
rs1325159679 1990 dbSNP
rs891820424 1993 dbSNP
rs1262803031 1994 dbSNP
rs1315279117 1995 dbSNP
rs1053122026 2001 dbSNP
rs1428777615 2002 dbSNP
rs1191984237 2011 dbSNP
rs777304455 2018 dbSNP
rs951139113 2022 dbSNP
rs1025230142 2032 dbSNP
rs904572414 2033 dbSNP
rs190320222 2034 dbSNP
rs537362635 2045 dbSNP
rs1371301865 2048 dbSNP
rs1290443968 2057 dbSNP
rs898416106 2066 dbSNP
rs654428 2067 dbSNP
rs1012589563 2068 dbSNP
rs1293683171 2069 dbSNP
rs752580553 2070 dbSNP
rs1235116027 2074 dbSNP
rs1302695313 2081 dbSNP
rs1218514520 2086 dbSNP
rs1261723722 2087 dbSNP
rs896296064 2088 dbSNP
rs894958801 2089 dbSNP
rs1056702855 2092 dbSNP
rs1189375938 2093 dbSNP
rs1455253257 2096 dbSNP
rs1424236363 2107 dbSNP
rs1256533976 2114 dbSNP
rs1185402033 2116 dbSNP
rs1393912942 2124 dbSNP
rs1431406381 2129 dbSNP
rs551362870 2136 dbSNP
rs3756794 2164 dbSNP
rs1345627111 2175 dbSNP
rs1274775361 2180 dbSNP
rs1318216811 2180 dbSNP
rs902631258 2181 dbSNP
rs918289201 2187 dbSNP
rs1338034096 2188 dbSNP
rs972390242 2197 dbSNP
rs1043741550 2204 dbSNP
rs1246161641 2212 dbSNP
rs1226028272 2223 dbSNP
rs753667112 2225 dbSNP
rs1308323988 2236 dbSNP
rs941123500 2245 dbSNP
rs1237342019 2246 dbSNP
rs1275379143 2260 dbSNP
rs1355272920 2262 dbSNP
rs909609314 2264 dbSNP
rs565923390 2265 dbSNP
rs1213894904 2274 dbSNP
rs547914957 2277 dbSNP
rs985612401 2278 dbSNP
rs1178945010 2280 dbSNP
rs946721628 2290 dbSNP
rs1418367334 2298 dbSNP
rs1156717497 2307 dbSNP
rs529356941 2308 dbSNP
rs1462204279 2324 dbSNP
rs1411919395 2326 dbSNP
rs974995164 2334 dbSNP
rs977442927 2335 dbSNP
rs944973669 2337 dbSNP
rs528863197 2340 dbSNP
rs1408219737 2352 dbSNP
rs984033606 2354 dbSNP
rs1000167542 2359 dbSNP
rs1392952078 2365 dbSNP
rs139474072 2377 dbSNP
rs918376339 2389 dbSNP
rs973693169 2390 dbSNP
rs752045738 2391 dbSNP
rs1023077913 2399 dbSNP
rs1162480773 2403 dbSNP
rs147131066 2405 dbSNP
rs895003736 2418 dbSNP
rs186987708 2423 dbSNP
rs1180632674 2431 dbSNP
rs960916018 2450 dbSNP
rs545313698 2451 dbSNP
rs1480288896 2460 dbSNP
rs1012397071 2476 dbSNP
rs999396893 2479 dbSNP
rs1036670783 2486 dbSNP
rs902580714 2492 dbSNP
rs1211014170 2494 dbSNP
rs1334717932 2495 dbSNP
rs894005985 2497 dbSNP
rs145139968 2506 dbSNP
rs1411906949 2509 dbSNP
rs1230544352 2515 dbSNP
rs139509436 2523 dbSNP
rs909534413 2524 dbSNP
rs985205034 2527 dbSNP
rs1408588057 2528 dbSNP
rs760920762 2529 dbSNP
rs1315334430 2531 dbSNP
rs932396037 2537 dbSNP
rs1414552937 2538 dbSNP
rs1282725248 2544 dbSNP
rs1324256516 2553 dbSNP
rs1441576351 2555 dbSNP
rs117512 2570 dbSNP
rs573620322 2571 dbSNP
rs1458672864 2580 dbSNP
rs944946187 2587 dbSNP
rs555561759 2593 dbSNP
rs1031898794 2599 dbSNP
rs1235472805 2603 dbSNP
rs1476535931 2608 dbSNP
rs912164169 2614 dbSNP
rs1157678537 2616 dbSNP
rs978989217 2627 dbSNP
rs968734339 2648 dbSNP
rs1427895566 2652 dbSNP
rs1047887996 2656 dbSNP
rs1175521141 2657 dbSNP
rs1376603373 2658 dbSNP
rs767585607 2667 dbSNP
rs1347292676 2669 dbSNP
rs1216208563 2670 dbSNP
rs1432525019 2677 dbSNP
rs537200358 2686 dbSNP
rs1198899142 2687 dbSNP
rs41269317 2688 dbSNP
rs1225553518 2692 dbSNP
rs1013042812 2695 dbSNP
rs868748979 2698 dbSNP
rs895863719 2708 dbSNP
rs1448504984 2709 dbSNP
rs1211109170 2724 dbSNP
rs962438124 2735 dbSNP
rs1283966352 2737 dbSNP
rs1447823929 2742 dbSNP
rs1195598773 2747 dbSNP
rs1035275249 2750 dbSNP
rs774935040 2756 dbSNP
rs1454256891 2757 dbSNP
rs147377985 2759 dbSNP
rs1401651312 2763 dbSNP
rs1317994769 2766 dbSNP
rs182326961 2772 dbSNP
rs897083882 2782 dbSNP
rs1401726493 2784 dbSNP
rs1432379170 2793 dbSNP
rs1327370482 2794 dbSNP
rs566090785 2803 dbSNP
rs547442049 2806 dbSNP
rs1005413903 2808 dbSNP
rs377055531 2812 dbSNP
rs568521728 2827 dbSNP
rs1368861435 2838 dbSNP
rs932400303 2839 dbSNP
rs1437154947 2840 dbSNP
rs1215750138 2845 dbSNP
rs1253762861 2846 dbSNP
rs922347824 2850 dbSNP
rs549209595 2853 dbSNP
rs41269315 2865 dbSNP
rs934868515 2866 dbSNP
rs1470766251 2867 dbSNP
rs1158377479 2881 dbSNP
rs191000383 2884 dbSNP
rs1455354044 2886 dbSNP
rs966503848 2894 dbSNP
rs1394667579 2903 dbSNP
rs1385736835 2918 dbSNP
rs1320945251 2923 dbSNP
rs979040106 2926 dbSNP
rs111788473 2927 dbSNP
rs397039 2928 dbSNP
rs111528426 2929 dbSNP
rs796566035 2929 dbSNP
rs770092129 2939 dbSNP
rs34202698 2953 dbSNP
rs960416108 2956 dbSNP
rs1252701091 2962 dbSNP
rs1438932124 2963 dbSNP
rs1392716552 2981 dbSNP
rs540640515 2990 dbSNP
rs1041021708 2995 dbSNP
rs1035756612 2997 dbSNP
rs993972135 3013 dbSNP
rs1166019333 3021 dbSNP
rs1191095684 3033 dbSNP
rs573682199 3034 dbSNP
rs117955362 3040 dbSNP
rs1397968455 3048 dbSNP
rs1009353403 3052 dbSNP
rs774565563 3057 dbSNP
rs1444357770 3066 dbSNP
rs1015374169 3068 dbSNP
rs1279677141 3069 dbSNP
rs1210435206 3072 dbSNP
rs1348475862 3076 dbSNP
rs890696121 3077 dbSNP
rs141968346 3100 dbSNP
rs1230553927 3113 dbSNP
rs929578016 3118 dbSNP
rs1242833098 3121 dbSNP
rs1253188107 3131 dbSNP
rs1362527901 3139 dbSNP
rs1049398172 3143 dbSNP
rs1269378885 3144 dbSNP
rs1428309498 3148 dbSNP
rs1205157126 3155 dbSNP
rs1273112301 3162 dbSNP
rs576272757 3162 dbSNP
rs1189122244 3175 dbSNP
rs777309857 3176 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 55754.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018247 | 3UTR | AUAAUAUUUGGUUAGUAUGUCCUAUGUUAAUAAAAAUGAACAAAAUUAAUUUUGCUAUGUUCAGGUGUCUUGAUAAAAUAACAAUGCUCCAGUGUUGUUGCUUACAUUUAGCACUAAAUUUUAACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_018247 | 3UTR | AUAUUUGGUUAGUAUGUCCUAUGUUAAUAAAAAUGAACAAAAUUAAUUUUGCUAUGUUCAGGUGUCUUGAUAAAAUAACAAUGCUCCAGUGUUGUUGCUUACAUUUAGCACUAAAUUUUAACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_018247 | 3UTR | UGUUAAUAAAAAUGAACAAAAUUAAUUUUGCUAUGUUCAGGUGUCUUGAUAAAAUAACAAUGCUCCAGUGUUGUUGCUUACAUUUAGCACUAAAUUUUAACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_018247 | 3UTR | UUUGGUUAGUAUGUCCUAUGUUAAUAAAAAUGAACAAAAUUAAUUUUGCUAUGUUCAGGUGUCUUGAUAAAAUAACAAUGCUCCAGUGUUGUUGCUUACAUUUAGCACUAAAUUUUAACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_018247 | 3UTR | UAUUUGGUUAGUAUGUCCUAUGUUAAUAAAAAUGAACAAAAUUAAUUUUGCUAUGUUCAGGUGUCUUGAUAAAAUAACAAUGCUCCAGUGUUGUUGCUUACAUUUAGCACUAAAUUUUAACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_018247 | 3UTR | UAUUAAAUGAUAAUAUUUGGUUAGUAUGUCCUAUGUUAAUAAAAAUGAACAAAAUUAAUUUUGCUAUGUUCAGGUGUCUUGAUAAAAUAACAAUGCUCCAGUGUUGUUGCUUACAUUUAGCACUAAAUUUUAACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000230461.6 | 3UTR | CUUACAUUUAGCACUAAAUUUUAACACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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