pre-miRNA Information
pre-miRNA hsa-mir-190b   
Genomic Coordinates chr1: 154193665 - 154193743
Description Homo sapiens miR-190b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-190b
Sequence 11| UGAUAUGUUUGAUAUUGGGUU |31
Evidence Not_experimental
Experiments
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TATDN2   
Synonyms -
Description TatD DNase domain containing 2
Transcript NM_014760   
Expression
Putative miRNA Targets on TATDN2
3'UTR of TATDN2
(miRNA target sites are highlighted)
>TATDN2|NM_014760|3'UTR
   1 GCAGAGAAGGTACAGTCCTCGGGAGTCTCCTAGAAAAGGGCGACCAGCAGCCTGACAGAACACAGGCTGGCTTGAAGTCT
  81 GTGTCTCAGGTCGAGGATGTGTTTAGAGAGCTGATTGGAACACAGAAAACCAGGACAGGATGTTTTCCTCCAAGCGGGTC
 161 ATAAGGCTTCAGCTTCTGGGTGGTGGGTGGGGTGGGGTGGGCATGGAATGAGGGGTATGGGGACTGCCTGTAATAGCACT
 241 GGGATTTTGCCTCCCAGCCAAAATGCTCCAGGGTAGGCAGCAAAGAAGAAAGAGTGCGATATGAGGGTACAGTGAGTTTG
 321 GCAGTCCAAATTCTGTTCTCTGCAGCCTGTTTTTGAGTAGTTGGTGAATAAAGTCACCCGCCTACTTGTCTAAGCACATG
 401 TGGGTGTGTAACTCAGTTCCTGGTTCTCGGTTCTAAAAACAGACTTCCAACTGGGAAACTTTTTGGGGGAAATTAACTGG
 481 ACACCTATCTCGGAGGTTTATTTTCTTGCAACCAGTGAAGTCGTCCTCCTCCCTTCCCTGGATAACTCTTCAGTTTGACT
 561 GTCACTGTTCTGGTGTCAACTCCAGCGTCGGCACAGGCAGAAGGACTTCAGCTGCTGGTCTCATTGGTTCCACTGCCATT
 641 GATATGGGGGGGTGCAGAGGAGCACTCATTGTCCATGATGGAGATCCAGGACAGACTGGGGGACTCCGGGAAGAGGCTTT
 721 CTTGGGGAAGAGGACCCCAAAGGAGGTACTTCCTCCTCACTGATGCCCTCAGGGCTGCTGTGTGGGTGTGTTAAGCTGAT
 801 AAGGTTCAGTTTGCGGCGGAAACTACCTGCTAGTCTTGTGTCAGGGGCTGCCAGCCTCCTTTTGTTTCACTTTTGCCCCC
 881 TTCTTGGGAACATTTGACCAAAAATAATCCTCATTTCATCTTGTGTACAGTCCTTTGTGTACCCCGCCCAGGTTGAGAGG
 961 TGAATCAGCGTAATTCTCCGAAGCTCTGCTGGGCAGCTCAGCCATGTTACATTGTCTATGCAGAATAAGCAGGCCTGGTG
1041 TCTGCAAATGTACCAGTCCTTCTCCCGCATCTCCTGGGTGCCCCCTTGGCTTTGCCTCTCCTGTGTCCTGTCTTTCTGCG
1121 TTTTAGAAGTGAGAGCCTCTCCTTCACCTTTTGAGCAACTGAGTCATCTCAAGTCCTGAGCTCTGCTCTGCCGCCTGCTG
1201 GTGCCTTGTAAAGGTATACTCGTTACAGGCCCTAGAGGTTCTAATGGTCCAGGGTTAAGTGAGAGGAGACTGTACTTTGT
1281 TTCAAAGGATCCTTCACCCTGATCTGCAGTGAGGTGGATAGATCACCTGGAGTCCCTCGTCTGTGGTCTTGGAGGCTTAA
1361 ATTGTAAAATACATCCCTTATGGAATCCTAAATTCCTCTAGGTGTTTTTGGAAGGCGCATTTGAGCCTTGTGAGCTAAAA
1441 TGGAATGGATTTAATATTTCCTATCTGGCATTTCCATCTTGCCCCTGGTACACAAGTCACTGGCCTGGAACTCAGCCTTG
1521 ATTCACTGTCCGTCTTCACGGATTAGCTGTGCTGTTATGTTGTCTGTGCTGCAGATTGGCCCATGTGGGAAGTCGGGGGG
1601 GACCTGATTTCCTGCTTGGAAGACTTGGGGGACTGCCGAGCATATCAAAGTGTTTATAGTCACCAAGTGAACTGCAGCAC
1681 AACCATCTCCTCTCCAGCAAGCCCTGAAGTCAGTAGTGCCTGCAGGTGAAACCAACCAGCCCTGTGTTAGAGGAGGAAAA
1761 GCGGAGATGACATGGAAGTCTCCAAGCCTGTGCCATCCACCTGCCAAGGAAAAGCACAAGGTGCTATCTACTTTTCTCTC
1841 TAGGATTTAGATTATCATTTATGTGCTGTTGCACAGTGAAACCTCACCTGTGTGGGCGTGAAAGCTGATTGGCATTGTTT
1921 TTGATTCAGCTTTTTGGATGGCTAATTGTTTTCACTGTGCTGTGGGAATGCCTCTGTATTTTTTCCCCTCTTTGGCCATC
2001 TTTTTCTGAAAATAAAGTGATGGATCCTCTAGCCAACCCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uugggUUAUAGUUUGUAUAGu 5'
               | |: |:|:|||||| 
Target 5' gggggACTGCCGAGCATATCa 3'
1627 - 1647 140.00 -11.80
2
miRNA  3' uuGGGU-UAUAG-UU--UGUAUAgu 5'
            ||:|  |:|| ||  ||||:|  
Target 5' cgCCTACTTGTCTAAGCACATGTgg 3'
379 - 403 117.00 -8.30
3
miRNA  3' uuGGGUUAUAGUUUGUAUAGu 5'
            :||  |||| ::||| || 
Target 5' ttTCC--TATCTGGCATTTCc 3'
1457 - 1475 111.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1264306 379 COSMIC
COSN26847638 532 COSMIC
COSN229526 870 COSMIC
COSN31486959 928 COSMIC
COSN27949044 971 COSMIC
COSN24018656 973 COSMIC
COSN28660704 1026 COSMIC
COSN31592182 1082 COSMIC
COSN31518621 1127 COSMIC
COSN31570144 1138 COSMIC
COSN26634339 1176 COSMIC
COSN31537728 1203 COSMIC
COSN31557220 1277 COSMIC
COSN21610310 1286 COSMIC
COSN31480324 1447 COSMIC
COSN30542636 1540 COSMIC
COSN26554465 1592 COSMIC
COSN31536431 1640 COSMIC
COSN8487811 1689 COSMIC
COSN30170110 1690 COSMIC
COSN28715327 1813 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs147116023 3 dbSNP
rs1471537515 4 dbSNP
rs1306415862 5 dbSNP
rs1157044297 9 dbSNP
rs770236341 10 dbSNP
rs773743589 11 dbSNP
rs763996292 12 dbSNP
rs555389193 14 dbSNP
rs771865718 15 dbSNP
rs775065614 18 dbSNP
rs1357930825 19 dbSNP
rs1291553053 20 dbSNP
rs371911032 21 dbSNP
rs376549000 22 dbSNP
rs1350549629 23 dbSNP
rs1225163202 30 dbSNP
rs1276027695 33 dbSNP
rs531492415 36 dbSNP
rs370643395 39 dbSNP
rs771664201 39 dbSNP
rs139484139 42 dbSNP
rs1032090915 43 dbSNP
rs1482073531 53 dbSNP
rs367905228 54 dbSNP
rs1393587609 59 dbSNP
rs957988188 61 dbSNP
rs188915876 63 dbSNP
rs906753164 79 dbSNP
rs578121883 87 dbSNP
rs970388365 88 dbSNP
rs981978011 94 dbSNP
rs1285897821 99 dbSNP
rs1033779401 109 dbSNP
rs1238150629 112 dbSNP
rs773276248 120 dbSNP
rs1005240498 129 dbSNP
rs144198690 130 dbSNP
rs940524522 131 dbSNP
rs961064938 136 dbSNP
rs1279120259 146 dbSNP
rs370821374 148 dbSNP
rs1396369613 156 dbSNP
rs2075355 157 dbSNP
rs932027667 168 dbSNP
rs1421050901 175 dbSNP
rs953921013 178 dbSNP
rs1468404911 181 dbSNP
rs985305230 183 dbSNP
rs944716906 185 dbSNP
rs542247478 187 dbSNP
rs925765622 202 dbSNP
rs1190101280 209 dbSNP
rs181664798 212 dbSNP
rs1252033968 214 dbSNP
rs1263175890 215 dbSNP
rs989580402 217 dbSNP
rs1416723240 224 dbSNP
rs147339930 230 dbSNP
rs1286864988 231 dbSNP
rs1227758289 246 dbSNP
rs1000455914 248 dbSNP
rs1354571004 250 dbSNP
rs913939434 251 dbSNP
rs1063429 260 dbSNP
rs1275997741 262 dbSNP
rs1046803685 263 dbSNP
rs1361035770 266 dbSNP
rs906805539 267 dbSNP
rs938251724 272 dbSNP
rs894656171 273 dbSNP
rs139783757 277 dbSNP
rs866485052 279 dbSNP
rs1055242719 280 dbSNP
rs1162486674 287 dbSNP
rs1163468797 290 dbSNP
rs1474845685 295 dbSNP
rs1417137731 298 dbSNP
rs760118475 309 dbSNP
rs1005747364 313 dbSNP
rs1015351547 314 dbSNP
rs1466061395 323 dbSNP
rs1264497710 335 dbSNP
rs1220978855 339 dbSNP
rs1298883483 342 dbSNP
rs1292358801 344 dbSNP
rs1398736520 346 dbSNP
rs1389688132 351 dbSNP
rs1255946616 352 dbSNP
rs1220214747 356 dbSNP
rs1341097952 358 dbSNP
rs1274181830 362 dbSNP
rs896859260 366 dbSNP
rs997880441 367 dbSNP
rs1323571488 380 dbSNP
rs970355881 381 dbSNP
rs187239481 384 dbSNP
rs1169043133 397 dbSNP
rs1356298095 411 dbSNP
rs115117733 416 dbSNP
rs1014544918 419 dbSNP
rs1477292453 421 dbSNP
rs760199342 424 dbSNP
rs953974493 425 dbSNP
rs985358973 427 dbSNP
rs973355055 428 dbSNP
rs1032887645 447 dbSNP
rs1200381000 455 dbSNP
rs1318325707 460 dbSNP
rs765467483 463 dbSNP
rs1217413776 464 dbSNP
rs549252708 464 dbSNP
rs1228788817 465 dbSNP
rs1274947861 469 dbSNP
rs1445368995 474 dbSNP
rs1374243507 475 dbSNP
rs192072308 484 dbSNP
rs914005568 491 dbSNP
rs1355492096 497 dbSNP
rs945422836 501 dbSNP
rs953260960 502 dbSNP
rs1486433792 507 dbSNP
rs1173276000 518 dbSNP
rs3204477 521 dbSNP
rs1236644547 527 dbSNP
rs912013207 531 dbSNP
rs927950147 533 dbSNP
rs1458334498 536 dbSNP
rs938304292 537 dbSNP
rs1041701098 538 dbSNP
rs1371222900 540 dbSNP
rs1055296019 542 dbSNP
rs1238875989 543 dbSNP
rs1350842406 556 dbSNP
rs1460560565 560 dbSNP
rs537593883 562 dbSNP
rs1240426655 563 dbSNP
rs941540700 566 dbSNP
rs1377930009 567 dbSNP
rs1302684431 584 dbSNP
rs1446238508 586 dbSNP
rs548917708 587 dbSNP
rs1361481812 588 dbSNP
rs1314012562 602 dbSNP
rs896916779 607 dbSNP
rs1167379902 608 dbSNP
rs567343413 609 dbSNP
rs998331185 612 dbSNP
rs1050773595 620 dbSNP
rs1416841873 625 dbSNP
rs534951457 637 dbSNP
rs376615821 642 dbSNP
rs1006848194 645 dbSNP
rs1355237495 649 dbSNP
rs1032940018 650 dbSNP
rs957489224 667 dbSNP
rs553235663 680 dbSNP
rs1487229373 681 dbSNP
rs1306237803 683 dbSNP
rs756967995 684 dbSNP
rs1320788330 685 dbSNP
rs182731710 685 dbSNP
rs1310133510 687 dbSNP
rs1020519754 689 dbSNP
rs966849475 696 dbSNP
rs982597626 702 dbSNP
rs1381818410 703 dbSNP
rs186131246 715 dbSNP
rs1399969346 718 dbSNP
rs767341484 721 dbSNP
rs1300165129 723 dbSNP
rs1359137652 723 dbSNP
rs1044786701 724 dbSNP
rs538852826 725 dbSNP
rs1349582735 727 dbSNP
rs990746604 728 dbSNP
rs1256298633 729 dbSNP
rs1192617120 731 dbSNP
rs1476829056 737 dbSNP
rs1486086828 747 dbSNP
rs750117450 748 dbSNP
rs941583603 765 dbSNP
rs1003253012 773 dbSNP
rs755619455 775 dbSNP
rs1037224376 781 dbSNP
rs1014513301 783 dbSNP
rs1321911827 788 dbSNP
rs369959801 794 dbSNP
rs553842512 803 dbSNP
rs557570533 803 dbSNP
rs1027601479 804 dbSNP
rs933788328 805 dbSNP
rs779743045 806 dbSNP
rs10285 809 dbSNP
rs1169749445 815 dbSNP
rs1463863878 827 dbSNP
rs542749356 832 dbSNP
rs190061024 833 dbSNP
rs1432462630 835 dbSNP
rs182389131 839 dbSNP
rs77318135 843 dbSNP
rs1192384222 845 dbSNP
rs1054101691 859 dbSNP
rs772034329 865 dbSNP
rs1237154554 870 dbSNP
rs1290976315 874 dbSNP
rs1316430580 875 dbSNP
rs1010558314 880 dbSNP
rs542726665 889 dbSNP
rs540266262 896 dbSNP
rs565157993 898 dbSNP
rs971636243 909 dbSNP
rs1382148829 911 dbSNP
rs532485688 916 dbSNP
rs1304718382 925 dbSNP
rs1299310796 926 dbSNP
rs1388562451 928 dbSNP
rs1002622650 929 dbSNP
rs1330920582 930 dbSNP
rs1444764467 931 dbSNP
rs1402205568 932 dbSNP
rs1168244908 935 dbSNP
rs1372552584 946 dbSNP
rs1035074862 951 dbSNP
rs959420253 957 dbSNP
rs1177648048 959 dbSNP
rs544069359 961 dbSNP
rs1279205260 965 dbSNP
rs1416483210 972 dbSNP
rs909854554 974 dbSNP
rs562714561 975 dbSNP
rs907391274 976 dbSNP
rs1196699087 980 dbSNP
rs773350628 981 dbSNP
rs939078245 989 dbSNP
rs1254763713 995 dbSNP
rs748041336 1000 dbSNP
rs1348707741 1005 dbSNP
rs514658 1026 dbSNP
rs1379336532 1037 dbSNP
rs1329355847 1043 dbSNP
rs994545011 1052 dbSNP
rs1485541974 1054 dbSNP
rs934153906 1055 dbSNP
rs1027980842 1060 dbSNP
rs889000639 1065 dbSNP
rs1359351354 1075 dbSNP
rs1156260311 1076 dbSNP
rs1441184155 1078 dbSNP
rs1007490907 1082 dbSNP
rs1423586945 1087 dbSNP
rs1254439581 1091 dbSNP
rs1213651446 1096 dbSNP
rs1018761602 1097 dbSNP
rs1803475 1100 dbSNP
rs1285431847 1102 dbSNP
rs1254759676 1103 dbSNP
rs374958705 1103 dbSNP
rs187033350 1104 dbSNP
rs1280351344 1105 dbSNP
rs1243862216 1109 dbSNP
rs986940656 1115 dbSNP
rs910994530 1120 dbSNP
rs1314522795 1127 dbSNP
rs977487792 1128 dbSNP
rs113457217 1129 dbSNP
rs1343805878 1133 dbSNP
rs1420954482 1134 dbSNP
rs957594733 1137 dbSNP
rs747231866 1138 dbSNP
rs892787175 1144 dbSNP
rs915903646 1155 dbSNP
rs946025844 1160 dbSNP
rs1190457608 1161 dbSNP
rs373950455 1162 dbSNP
rs1042029602 1169 dbSNP
rs981675351 1174 dbSNP
rs907084428 1176 dbSNP
rs1284972465 1187 dbSNP
rs528446078 1192 dbSNP
rs145281867 1199 dbSNP
rs1302042269 1201 dbSNP
rs1036514265 1207 dbSNP
rs1034121497 1210 dbSNP
rs1355630122 1213 dbSNP
rs897612207 1216 dbSNP
rs191983359 1220 dbSNP
rs1316137159 1222 dbSNP
rs1048690492 1224 dbSNP
rs571837897 1225 dbSNP
rs1007459693 1229 dbSNP
rs776791150 1233 dbSNP
rs1467066931 1234 dbSNP
rs183516658 1235 dbSNP
rs1296833426 1238 dbSNP
rs575089860 1252 dbSNP
rs1480960544 1254 dbSNP
rs765477502 1257 dbSNP
rs1169175224 1265 dbSNP
rs998724840 1271 dbSNP
rs1450135219 1276 dbSNP
rs1255087091 1277 dbSNP
rs569457344 1278 dbSNP
rs1317083682 1285 dbSNP
rs1255845162 1288 dbSNP
rs957439592 1291 dbSNP
rs759931852 1294 dbSNP
rs986992917 1310 dbSNP
rs1433640258 1335 dbSNP
rs369667150 1337 dbSNP
rs542945540 1350 dbSNP
rs989897038 1351 dbSNP
rs1400027864 1359 dbSNP
rs1329676860 1363 dbSNP
rs1412152033 1366 dbSNP
rs914288714 1372 dbSNP
rs945711732 1379 dbSNP
rs1477078922 1390 dbSNP
rs775709550 1402 dbSNP
rs1194509830 1428 dbSNP
rs1457453063 1430 dbSNP
rs1236159574 1446 dbSNP
rs189005213 1447 dbSNP
rs1206334637 1454 dbSNP
rs1438369347 1461 dbSNP
rs1277828634 1462 dbSNP
rs1217032042 1471 dbSNP
rs763356200 1480 dbSNP
rs1303408217 1482 dbSNP
rs572188718 1484 dbSNP
rs1239011079 1492 dbSNP
rs938581506 1492 dbSNP
rs1296116568 1496 dbSNP
rs1055580500 1497 dbSNP
rs894303702 1500 dbSNP
rs765652253 1508 dbSNP
rs764558777 1513 dbSNP
rs540231965 1514 dbSNP
rs1294888516 1516 dbSNP
rs750057912 1524 dbSNP
rs376834733 1531 dbSNP
rs1178803562 1533 dbSNP
rs1470384832 1535 dbSNP
rs558565545 1539 dbSNP
rs193128296 1548 dbSNP
rs1207946396 1556 dbSNP
rs1308173063 1571 dbSNP
rs910202121 1573 dbSNP
rs147622780 1574 dbSNP
rs562508523 1575 dbSNP
rs1018494074 1587 dbSNP
rs754717658 1591 dbSNP
rs529820732 1593 dbSNP
rs541647714 1603 dbSNP
rs964210559 1628 dbSNP
rs536085783 1629 dbSNP
rs561044060 1632 dbSNP
rs1052926149 1642 dbSNP
rs1260046580 1643 dbSNP
rs1419165103 1649 dbSNP
rs967130463 1659 dbSNP
rs1474392891 1660 dbSNP
rs749705728 1663 dbSNP
rs554899915 1665 dbSNP
rs1161566072 1666 dbSNP
rs928290405 1669 dbSNP
rs1420789389 1674 dbSNP
rs184467361 1680 dbSNP
rs546547772 1689 dbSNP
rs77548531 1690 dbSNP
rs79228813 1697 dbSNP
rs973409391 1698 dbSNP
rs188447194 1705 dbSNP
rs1216102994 1707 dbSNP
rs35541467 1708 dbSNP
rs1320690652 1710 dbSNP
rs1289676194 1714 dbSNP
rs920083664 1716 dbSNP
rs1294427862 1729 dbSNP
rs1399869021 1730 dbSNP
rs1037509816 1744 dbSNP
rs1359955069 1750 dbSNP
rs1290671814 1751 dbSNP
rs138861902 1752 dbSNP
rs34349495 1752 dbSNP
rs754865633 1752 dbSNP
rs910339612 1752 dbSNP
rs943015574 1753 dbSNP
rs898601574 1754 dbSNP
rs772280433 1759 dbSNP
rs1263248269 1761 dbSNP
rs1186570669 1762 dbSNP
rs1047542170 1776 dbSNP
rs891130859 1786 dbSNP
rs1216457018 1788 dbSNP
rs1212269457 1794 dbSNP
rs1270960025 1795 dbSNP
rs35217039 1796 dbSNP
rs1008193951 1800 dbSNP
rs1018546173 1801 dbSNP
rs922941408 1806 dbSNP
rs964260894 1809 dbSNP
rs2072578 1813 dbSNP
rs1021776746 1814 dbSNP
rs967560015 1815 dbSNP
rs1330368120 1817 dbSNP
rs1011857637 1818 dbSNP
rs977189652 1822 dbSNP
rs1243246970 1825 dbSNP
rs1374692849 1826 dbSNP
rs1170612716 1827 dbSNP
rs928341307 1829 dbSNP
rs1432075870 1830 dbSNP
rs536820578 1831 dbSNP
rs1392655991 1833 dbSNP
rs1476664933 1837 dbSNP
rs1195112302 1844 dbSNP
rs555251224 1845 dbSNP
rs1044457161 1846 dbSNP
rs376779818 1849 dbSNP
rs991078697 1852 dbSNP
rs915840458 1853 dbSNP
rs369098956 1859 dbSNP
rs1253594293 1867 dbSNP
rs1205386038 1871 dbSNP
rs1389017193 1872 dbSNP
rs1002920638 1878 dbSNP
rs1037970048 1879 dbSNP
rs919090890 1883 dbSNP
rs1236809800 1901 dbSNP
rs1373198878 1906 dbSNP
rs1413741235 1908 dbSNP
rs533884318 1912 dbSNP
rs1389456656 1920 dbSNP
rs1047146338 1921 dbSNP
rs994412594 1922 dbSNP
rs891183241 1927 dbSNP
rs1373121697 1930 dbSNP
rs752303451 1931 dbSNP
rs1008244868 1940 dbSNP
rs952904824 1946 dbSNP
rs1181628150 1948 dbSNP
rs558222360 1952 dbSNP
rs986073992 1955 dbSNP
rs1039704440 1956 dbSNP
rs964424660 1959 dbSNP
rs1235054057 1961 dbSNP
rs900108401 1966 dbSNP
rs975846520 1978 dbSNP
rs368694371 1982 dbSNP
rs1011817862 1984 dbSNP
rs1022243249 1988 dbSNP
rs922911925 1997 dbSNP
rs1213071373 1998 dbSNP
rs1345961973 1998 dbSNP
rs967567794 2002 dbSNP
rs934347910 2011 dbSNP
rs988735060 2015 dbSNP
rs1285561643 2019 dbSNP
rs1237078635 2020 dbSNP
rs1337312644 2021 dbSNP
rs1307388224 2023 dbSNP
rs1395402952 2030 dbSNP
rs748048432 2038 dbSNP
rs914513294 2045 dbSNP
rs1314221648 2053 dbSNP
rs74710207 2055 dbSNP
rs1449028139 2056 dbSNP
rs1156460205 2073 dbSNP
rs1454963835 2080 dbSNP
rs1214292757 2088 dbSNP
rs1044173683 2091 dbSNP
rs1247897254 2096 dbSNP
rs1454356608 2102 dbSNP
rs1274942489 2104 dbSNP
rs1475190167 2110 dbSNP
rs191471238 2120 dbSNP
rs1486047032 2122 dbSNP
rs1261044207 2126 dbSNP
rs777572358 2140 dbSNP
rs959750601 2144 dbSNP
rs991131104 2152 dbSNP
rs1232426757 2156 dbSNP
rs1158999148 2158 dbSNP
rs11554649 2164 dbSNP
rs1057169400 2170 dbSNP
rs897142209 2175 dbSNP
rs1386877470 2188 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 9797.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_014760 | 3UTR | ACUUGGGGGACUGCCGAGCAUAUCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000448281.2 | 3UTR | CAAAGUGUUUAUAGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.681 1.2e-4 -0.650 2.9e-4 24 Click to see details
GSE21687 Ependynoma primary tumors -0.294 9.2e-3 -0.390 7.2e-4 64 Click to see details
GSE38226 Liver fibrosis 0.457 1.9e-2 0.113 3.1e-1 21 Click to see details
GSE42095 Differentiated embryonic stem cells 0.405 2.8e-2 0.381 3.6e-2 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.377 3.2e-2 -0.438 1.4e-2 25 Click to see details
GSE19783 ER+ ER+ breast cancer 0.409 3.7e-2 0.426 3.1e-2 20 Click to see details
GSE28260 Renal cortex and medulla 0.491 4.4e-2 0.577 1.9e-2 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.288 1.1e-1 0.511 1.1e-2 20 Click to see details
GSE26953 Aortic valvular endothelial cells -0.254 1.2e-1 -0.193 1.8e-1 24 Click to see details
GSE19350 CNS germ cell tumors 0.301 1.7e-1 0.327 1.5e-1 12 Click to see details
GSE19536 Breast cancer 0.089 1.9e-1 0.084 2.0e-1 100 Click to see details
GSE19783 ER- ER- breast cancer -0.067 2.8e-1 -0.067 2.8e-1 79 Click to see details
GSE17498 Multiple myeloma -0.092 2.9e-1 0.107 2.6e-1 40 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.192 3.4e-1 0.143 3.8e-1 7 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.052 4.0e-1 -0.078 3.6e-1 25 Click to see details
GSE32688 Pancreatic cancer 0.026 4.4e-1 0.040 4.1e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.374 0.06 0.393 0.05 18 Click to see details
STAD 0.695 0.1 0.900 0.02 5 Click to see details
LUSC -0.254 0.15 -0.225 0.18 19 Click to see details
HNSC -0.201 0.18 -0.101 0.32 23 Click to see details
CHOL -0.619 0.19 -0.600 0.2 4 Click to see details
THCA -0.136 0.26 -0.062 0.39 24 Click to see details
PRAD -0.139 0.26 -0.145 0.25 23 Click to see details
UCEC -0.17 0.27 -0.171 0.27 15 Click to see details
LUAD -0.198 0.32 -0.214 0.31 8 Click to see details
KICH -0.252 0.34 0.200 0.37 5 Click to see details
ESCA -0.249 0.38 0.200 0.4 4 Click to see details
BRCA 0.032 0.39 0.045 0.35 72 Click to see details
KIRP -0.103 0.41 -0.500 0.13 7 Click to see details
KIRC -0.029 0.46 -0.071 0.41 13 Click to see details
KIRC -0.029 0.46 -0.071 0.41 13 Click to see details
KIRC -0.029 0.46 -0.071 0.41 13 Click to see details
KIRC -0.029 0.46 -0.071 0.41 13 Click to see details
KIRC -0.029 0.46 -0.071 0.41 13 Click to see details
KIRC -0.029 0.46 -0.071 0.41 13 Click to see details
60 hsa-miR-190b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054581 IGF1 insulin like growth factor 1 4 1
MIRT066966 ATXN7L3B ataxin 7 like 3B 2 2
MIRT192449 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT250414 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT306294 KLHL24 kelch like family member 24 2 2
MIRT355845 SGMS2 sphingomyelin synthase 2 2 4
MIRT437770 MTMR6 myotubularin related protein 6 1 1
MIRT437771 MTMR6 myotubularin related protein 6 1 1
MIRT437772 Mtmr6 myotubularin related protein 6 1 1
MIRT444672 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446389 PCDHB11 protocadherin beta 11 2 2
MIRT446634 SDC3 syndecan 3 2 2
MIRT449410 TRIM5 tripartite motif containing 5 2 2
MIRT449560 GPC5 glypican 5 2 2
MIRT469928 PTPRJ protein tyrosine phosphatase, receptor type J 2 6
MIRT473736 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT474210 LDHA lactate dehydrogenase A 2 2
MIRT474583 KLF6 Kruppel like factor 6 2 2
MIRT476732 FOXN2 forkhead box N2 2 2
MIRT478455 DAB2 DAB2, clathrin adaptor protein 2 2
MIRT495327 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 4
MIRT498615 MTRNR2L10 MT-RNR2-like 10 2 12
MIRT501734 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT501849 MTRNR2L8 MT-RNR2-like 8 2 14
MIRT504678 CYGB cytoglobin 2 4
MIRT506517 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507984 BCL2L13 BCL2 like 13 2 4
MIRT508444 ZNF608 zinc finger protein 608 2 4
MIRT511366 IL6ST interleukin 6 signal transducer 2 4
MIRT520515 TRA2B transformer 2 beta homolog 2 2
MIRT524571 CALML4 calmodulin like 4 2 4
MIRT531896 INVS inversin 2 4
MIRT533916 TATDN2 TatD DNase domain containing 2 2 2
MIRT537503 FAM13B family with sequence similarity 13 member B 2 2
MIRT541689 CCDC160 coiled-coil domain containing 160 2 8
MIRT544419 ZNF460 zinc finger protein 460 2 4
MIRT544615 CSDE1 cold shock domain containing E1 2 2
MIRT545076 IL7R interleukin 7 receptor 2 2
MIRT545849 ZNF264 zinc finger protein 264 2 4
MIRT547436 MED4 mediator complex subunit 4 2 2
MIRT550157 ZNF223 zinc finger protein 223 2 4
MIRT553948 STAMBP STAM binding protein 2 2
MIRT554395 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT555667 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT564193 PM20D2 peptidase M20 domain containing 2 2 2
MIRT566792 MKL2 MKL1/myocardin like 2 2 2
MIRT566843 LRRC58 leucine rich repeat containing 58 2 2
MIRT572516 KIAA0232 KIAA0232 2 2
MIRT607428 NOTCH2NL notch 2 N-terminal like 2 10
MIRT627779 RAB30 RAB30, member RAS oncogene family 2 2
MIRT635159 ENO4 enolase family member 4 2 2
MIRT642159 ADCYAP1R1 ADCYAP receptor type I 3 2
MIRT646205 DUSP10 dual specificity phosphatase 10 2 2
MIRT657007 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT665817 TMEM161B transmembrane protein 161B 2 2
MIRT667488 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT707098 ZNF850 zinc finger protein 850 2 2
MIRT708719 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT735521 HUS1 HUS1 checkpoint clamp component 3 0
MIRT736644 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-190b Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-190b Atorvastatin approved 60823 Microarray PC3 prostate cancer cells 23936432 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-190b Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)

Error report submission