miRTarBase - #MIRT534063


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pre-miRNA Information
pre-miRNA hsa-mir-4446   
Genomic Coordinates chr3: 113594876 - 113594942
Description Homo sapiens miR-4446 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4446-5p
Sequence 8| AUUUCCCUGCCAUUCCCUUGGC |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1356015605 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SRSF10   
Synonyms FUSIP1, FUSIP2, NSSR, PPP1R149, SFRS13, SFRS13A, SRp38, SRrp40, TASR, TASR1, TASR2
Description serine and arginine rich splicing factor 10
Transcript NM_054016   
Other Transcripts NM_006625   
Expression
Putative miRNA Targets on SRSF10
3'UTR of SRSF10
(miRNA target sites are highlighted)		 
>SRSF10|NM_054016|3'UTR
   1 TAGTATAAACCATGGTCATTTTTAGGCATGTATCATTCATTTACTCATAGTTTGGTTTACTTAAATTATCAGGAATACAA
  81 TGTTGCAATGATGCTTAAAAAACACTTGTTAGTTTTCCCTGTACCAGGCAATGGTTATAATTAAAATGATATGCTGTTGA
 161 GAAGCCACTCTTAAGAGTCCAGTTTGTTTAATGTTATGGGCAGCTACCAATTTGTGGTGTCTCTGTATATTTTTGTAAAG
 241 ATTCTCATTTTTTATGCTTGAAGTATTTGGTGAAAAGATGTTGGTTGACCATAATTTGCAACATTGTCTCATTAAAAATA
 321 AACTTTCATATTCATATTTGGTAGAACTGTTAACCTAGAAATGTAGCTTGCTAATAAGATAGAATGATACAAAAGTGAAG
 401 TAGTAGCCACAGTACAACACTGACTGCTCAGACACATTTAGGTTCAGGGTGGACCTTTATGTCTTGTCAAGATGTCTAGG
 481 CCCGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTT
 561 CGAGACCAGCCTGACCAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTATCCGGGCATGGTGGCACATGCCT
 641 GTAATCTCAGCTACTCAGGAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAGGTAGAAGTTGCAGTGAGCCAAAATCAC
 721 GCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAACCGGATGTCTAGGCCAATGATA
 801 ATTATTTTTGATGCAGTGTGGATTAGTTCTTTTGTTAACCCCACTGTCTTGGGGAATGATGCCAGCTGGGAAATTGAGTT
 881 TTTGACTGAAACATGGAGCCTTCACTGCTTTTTTTCTGGTTCCTATGAAGATTTGGAACATAGAAAACACAAAAACTCAC
 961 CTTAAAATTTGAGCAGGTCGTTGATGGCAAAAATAATTTTAAGGAAAAAGGAATATTCTTATGTAGTTATTCTAAAGTTT
1041 AAGGAGCGTTGTTGACCATAATATTGCTTAGTTTTCTTACTGCTGTTAAGTAAGTAAATTGTTTCAAAGTAGGTTTTGTG
1121 TGTGTGTGCCTAGTGTAAAAGAACTGAAATTTTGATGCTTACAGCACTTGGCTCGTGCATTTGTATCAAAATTTGCCTGC
1201 CTCTTTATGAGGGAGGCCTGCTTTTCACACCTCAGTTTATTTAATACGAGGCAAGTTGTAAGACAACACTCATTCTAGGT
1281 GATTCTGTGGTGCCATGAAATTTAAGGTAATTTGGGGAAAAGGATTAGTCAGTTTTAAGCAAGAGTCACATCTTTTGAGC
1361 TTTCGATTATCAGTGTAGTACCTGACTAAAAATGAAGTAATACCCTTAAACCATTTATAATTTCTAGTATTTCTCTGAAA
1441 GATCGTTTTGGGGACAAAAGTGACTTGACATGTCCAATTTCATTTCAGAATAAAAAGCTAGCATCTTTAAAAATCTCAGA
1521 TTGCTTGCTTACAGATACAAGTACGAATTATGGACAAACGATTCCTTTTAGAGGATTACTTTTTTCAATTTCGGTTTTAG
1601 TAATCTAGGCTTTGCCTGTAAAGAATACAACGATGGATTTTAAATACTGTTTGTGGAATGTGTTTAAAGGATTGATTCTA
1681 GAACCTTTGTATATTTGATAGTATTTCTAACTTTCATTTCTTTACTGTTTGCAGTTAATGTTCATGTTCTGCTATGCAAT
1761 CGTTTATATGCACGTTTCTTTAATTTTTTTAGATTTTCCTGGATGTATAGTTTAAACAACAAAAAGTCTATTTAAAACTG
1841 TAGCAGTAGTTTACAGTTCTAGCAAAGAGGAAAGTTGTGGGGTTAAACTTTGTATTTTCTTTCTTATAGAGGCTTCTAAA
1921 AAGGTATTTTTATATGTTCTTTTTAACAAATATTGTGTACAACCTTTAAAACATCAATGTTTGGATCAAAACAAGACCCA
2001 GCTTATTTTCTGCTTGCTGTAAATTAAGCAAACATGCTATAATAAAAACAAAATGAAGGAAATAATGATTAACTGGAATT
2081 ATTACAGTATTGAATATGATTCTAAAATAACAATGGAAACAGTCCTTTATAGATTTAGGAATATTTTAAATCATTGTTGC
2161 ACTAGGCACAACTAACTTTTACTTTGGAAATGATAGAACTTGCCAGAAAGGTACATCTTTTACACAGTAGTTAAAAATTC
2241 ATTGTGTAATATCAAAGTTGTTTCATGATTGCTCATTAAGCCTCTTGGGTTAACTAACTTAAGAGGTTATTTGGTAGTGT
2321 TAAGATGAAATTTGGATCAGCTAATTCCAAGTTTATATTTTCATTATTGGATGGATCAGTAATTCTGCTCTCCCTCTTAT
2401 AAACAAGACGCATTAGGGCTTAACGTTTATGACATGATTTTAAATCATTTTAAATTGAATGTTGATGAGCAACTAATATT
2481 AAGTGATAACCTCTTTGGGGAAGTAGGTTAGGTATTTTGTGGTTTGAATTCTATCTACTTTATGACAATTATAGCTAATT
2561 TATTAAGTATTCATGATGTGCCAGACACTTGAAAAGGCTATGTGTTAACTCACTCTTCACAAAACCTTATGAGAAAGATA
2641 CTTTTATTTTCCCCATATCACAGATAAGGAAACTGAGGCACAAAGAAAAGACTGTAAGGCAGAGCCAGGATTTAAGCCCA
2721 GGCCTGGTCCCTTAGTTTTGGGGGGGTTTTGTTTGTTTTACAGACTATAATTTGAGAGAAGTAGATTGAGGAGATAGCTC
2801 ATTGAAATTGTTCATTTTCTGTATAGAACTAGAAGGCCTAATTTCATTTTTATTTTTACTTGTGTCAACTTATTTTTAGA
2881 CTTGGACTATTGAGAATCTTATATGTTGTTCCTAAAGCGACACACCTAACAGCTTCAAAAGGACTATATTACAGTTGAAC
2961 CCATGGTAGTTTGGATCCTACTGATACTTGATGAGGATCTTTACGTAGTGTTTTATGTTAGTTTTGGGTGATGTAGTTGA
3041 GTCCCCCACTTACTGAGTTTACCTACTGTGTATGACTGGGCTCAATGATAAATAGAATGGTTATATCAACACTCAAATGA
3121 GGGCTGACACACTTCACCTCTCCTTTTACTTAAGATCTCTCTGCATTTTTTTTTTTTTTTTGAAGCCAAGTAAGCAAGAA
3201 GAAAAATGAGAGATAATGCTTCAGTGAGAGAGGAAAGGTGCTACATAGAGTATGAGCTGTTAAGTTACATCCCAGGGGAA
3281 AGACCTGGGAACTATTGTATTATTCTCTTGAAAATTTGGCCCAGTAAGCTGCTACATCCAGTTCAACTAACAAAATCCTG
3361 TATACCACAGAGAAGAATAAAGGAAACCAAACTGACAAACATCCTTCTTTTATTTAAGACCAAACTGCAGCTGGAATACC
3441 CAGTACAGTTCTGCTTACTACACTTCAAGAAAGATCTGAAAGCGGAAAAAGAACCAAAGAAGGGCAGTTCAAGCGACCAA
3521 AGGGTGGGTGGAAGGTGCTGCAGTATGAATACTGTACGAATATTTTGACTCTGGTCTGAAAAGATAAAAGAATGTTATCG
3601 AAAACTACATGGAATAATTGAAGTCCCTTCAAGTTTGAAAGTAAGCATTTTAGGACAAATAAAAGGAAATTCAACTTTGT
3681 ACTTGTGGAAACTAATCCCTAAATATGAATAGGTTTATATTGATTCATGGGTAACAGGTCCATAATAAATTATTGGAAAC
3761 TAGGATGTCTGAATATCAAGGAAGACAGCCATAGTCTCTTACAGTGCCTCTGTTGGTCTGTCTCAAACTGAATTGGGTGG
3841 GAAAAGGTATGGTCCAATATAAAAGTTCCATTTTTGCCATTATTGGCAAATCTTGCCTTTGTTTATTTTGGTGCCAGTGT
3921 TTTCTGCTTAATCATTTGCTTTGTTGGCATCTGTGTTTATTTACTTGTACACCACATGCAGTTTACATCTGTCTTAACTA
4001 CTCCTTCCCAGGTAAATTCCAATTATATTTGACATCCAGCTAAGAGGGCCCATCTCTTCTCACCTCTTTCCTAGTCAGTA
4081 TATTCAGCAAATATTTATTGAGCCCTTACTGTGGGCAAATCATTGTACTGGATAATTGAGAAAAATAGATAATTCCCTTA
4161 TTCAGTAAATGTCTACTGAGCACAATCTAGTGAATCATTACAGTATGGCCTCATTGTTTTGTTTGAGGTGTGTTATTCAT
4241 AACAATATTTTACACCATTCGTATCAATGTAATTATAGAACACAATATACGATCAAGGATAAGTAATTGTGTGGTTATCT
4321 GCCATTTAAAAGTATCCAGTATTTGATCACATTATTATAAATAATGAAAAAATGATTTAATCTGTAATAAACTGGTTTAT
4401 TGTGCAGTGACTGTAATATACTAGAGTTATAATAAATTGTTTACTCTGCCTCACCAAACACATGCTAGGATATAACCCCC
4481 AAAATAAGTATTTAACTTTGCATTAGGTATAAAGGAGACTGGGTGCTATAATTAGATTATTTTGAGGCAGACAGAGAGCT
4561 GTTATCCTAACTGATTTAGTATGTTCTGTAATTGAGAAAATGTTCACCAAATTATACTTTTTAGTGATTTACATGTACAT
4641 TTTATAGGGGACATGTTCTGTGTATAGCGAATAAATAACTTTTATAGTATCACAAAATGTTTTGGATTCCTTAGTTTCTT
4721 ATTAGGATATGATGTTTCTTTACCTATACATTGATTTCATCACATTTGATTTTTGTCATCTTTTTTGCCACATACTTAAA
4801 ATTTTCCATATAAAATTAACTAAAAATCTGGAAGTGGAATTTAAGCTTTTAATTTGTAGCAATTTTGAAAATATAGCAGA
4881 GGTATATTTTCAAGGGAGGTGTGAAATGGAGGTATTATTGTTTGTATTTTATTTTAGAAATTTTGTTTGAACTTGCCCAA
4961 GATCACACAGCAAGTGTCAGATCCTAGGTTACAGCCCATAATTTTTCACTTGTTTCATCTTTTGTTACCATGTTTGTTGT
5041 TTAATCCAATGGGGAAGTGTTTTTATAGCTTTATTTTCATGGAGATAGTAACATTGATATAATGGGATCTAGAATTTACT
5121 TAGAGTCAAAGTGACTAGATTTAATTACAAAAAGTATTTTGTTGTATACCGTTATACACTCATTAACATAGGGGTTCTTA
5201 TGGACAGAGGTTCTATGTATTTTTAAAAGAATATGTAGAGGCTATAGACTTTTTTGCCCTCTACCTCCCTTCTCCATTTC
5281 CTTTTGAAGTTAAGACATTTAAGGGGGAGAATTAAGGTGCATATTGAGTTGGGGTTTTGTTTAAAAAAAATTAGGTAAAT
5361 ACATATATAACTACAATAACAACAGTTGGTAGTTCTCTAAAATATTTAATTATGGTAAATCAGAAAAGGCCCTTTAATTT
5441 TTGCATCTGTTGAATGAATTGCTTTAGGATCTCTTCTGTGGTTGTTTCTCTCTATACTGAATGCTGTCAATATTATTGAG
5521 CACTTACTGTGCCGAACCATGTGCTTTTCAAATATTTCTATTTAATCCTAAAAACACTCCTGGGAAATGGGTATTATTCC
5601 CATTTTACAGATGAGAAAATTGTCCTTTGTAGAATACCCATCATGTGATAGCTTCTTGCATATTATGCTATTCATTTCTC
5681 ACAACCTTACAAGGTAAATGGATAATGTTCCTGGATGAGAGATTAAACGTACTCGAAGATCTTATGGTTGTGTGGCTCAG
5761 AGACTCTAAGCATGGCTTTCCAAATCTCATTCTCTTGTAGAGATTTTCCATTGTATTGCATTTTGACCATGTTCCTGTTT
5841 ACAAAACCTAAGATTATATTCTGAAGTATCTGTGACTTGAGTGATAGCTCAGGAATAATCTGAGGGCATTCTATTAGGAA
5921 GGAGGACTAGCAAAGCCTATAGTTAGCCTATCCTAGGCATGAACTATTCTCATTTTAGATAGGATGACTTGATAAATAGG
6001 ATGAAGTGAGCAACCTGTTTGTCTTCGGTTATTGCTATCTACAAGACATTCTGCTAGTCACTGTGGAAAAGTTTCCTTCT
6081 CTTGGGTTTTTTCCTCTTCCCCTTCCTCTTAACAGTGTTGGTTATCTTTATTATGTTTCTGTGTATTTGTAACAGCTGTT
6161 TCACCCTTGTATTGCATAATGGGGATTTTTCTTGGAATAAAAAGTGAGGCATGTAAATTCATTGAGAACTAACCGTAGTT
6241 TGTAAAGAAGTAAAAGGCCTTTGTATCTAGTTTTTTGCAGATCACATTTCTTTGAATGCTGGAAAGTGAAATAAACTGGT
6321 CTAGGAGCCAAAAATAAATCTTGGGTTTTTTTAAGATTTTGCTCTTAGATTTGTAACCACCTGGGTACAACTTTTTCCTA
6401 ATTTGTGTAAGAGGTTTTAGAGATGCACTCTGTCCCTCTTGCTTTACAAATTGCCTACAAGAATGCAACCAAAATACTAG
6481 AAACTGAAACTTACACAAAACCTTTCAGGTTTTTTCCTGTGTTGTAGTTCTAGGGAAGAGGATAGTTTATTAGTATTTAT
6561 TTTAAGCTTAAGGATAGGTTTTGGACCTGGATTCCATCATAGTATAACTGCCATCGAAAAGAAGACAAATTGAAATTACA
6641 GCATTTACCTAAGGTTCACAGTATGGCTGACTTCAGCAGCCTTACATGGTAAGTTCTCTGTACCAGCTATTTTTGGTTCT
6721 CGCAATTGCATCGACTTGGGAAATTCCTATCACCATTCTCTATATAGGCTAACCAAAACTTTTATCAGTACCTTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgGUUCCCUUACCGUCCCUUUa 5'
            :|||| |||  ::|||||| 
Target 5' ttTAAGGTAAT-TTGGGGAAAa 3'
 1301 - 1321 147.00 -11.90
2 
miRNA  3' cgGUUCCCU-UACCGUCCCUUUa 5'
            :|||  | ||  |||||:|| 
Target 5' gtTAAGTTACATCCCAGGGGAAa 3'
 3259 - 3281 140.00 -12.25
3 
miRNA  3' cgguUCCCUUAC------CGUCCCUUUa 5'
              :|||||||      || |||||| 
Target 5' tcttGGGGAATGATGCCAGCTGGGAAAt 3'
 847 - 874 136.00 -20.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1101115 32 COSMIC
COSN26297801 2750 COSMIC
COSN26297443 2754 COSMIC
COSN24942325 2857 COSMIC
COSN20960202 2944 COSMIC
COSN23976107 3005 COSMIC
COSN32075866 3107 COSMIC
COSM5990551 3165 COSMIC
COSN6402771 3166 COSMIC
COSM5574059 3182 COSMIC
COSM9226500 3182 COSMIC
COSN26728103 3270 COSMIC
COSM3804582 3476 COSMIC
COSN31576365 3491 COSMIC
COSN21490269 4538 COSMIC
COSN2511329 4682 COSMIC
COSN32065757 4778 COSMIC
COSN21354117 4966 COSMIC
COSN21110768 5150 COSMIC
COSN20668844 5281 COSMIC
rs35233638 3045 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1346732641 2 dbSNP
rs1285215268 3 dbSNP
rs1033970770 5 dbSNP
rs1390157088 22 dbSNP
rs774849934 27 dbSNP
rs1298956274 32 dbSNP
rs1463770923 34 dbSNP
rs1000291060 40 dbSNP
rs1168274895 44 dbSNP
rs1464998785 46 dbSNP
rs1429883187 48 dbSNP
rs1201558120 49 dbSNP
rs1430949007 54 dbSNP
rs1266131057 60 dbSNP
rs904414442 68 dbSNP
rs1481413993 71 dbSNP
rs1256518476 88 dbSNP
rs1198436270 105 dbSNP
rs1324777588 108 dbSNP
rs1265507733 118 dbSNP
rs1231791353 121 dbSNP
rs1490287145 124 dbSNP
rs1330578405 131 dbSNP
rs1290092400 147 dbSNP
rs1207676333 148 dbSNP
rs1307809185 151 dbSNP
rs1393289778 152 dbSNP
rs1374992399 153 dbSNP
rs1330994188 156 dbSNP
rs1464883243 156 dbSNP
rs1406636146 160 dbSNP
rs1471035372 161 dbSNP
rs1174238715 169 dbSNP
rs1464495689 172 dbSNP
rs1357967045 174 dbSNP
rs1159236147 175 dbSNP
rs1441109168 179 dbSNP
rs1265696324 195 dbSNP
rs1225979062 200 dbSNP
rs1042036474 208 dbSNP
rs945864192 212 dbSNP
rs1462041868 220 dbSNP
rs370316248 221 dbSNP
rs1344925539 227 dbSNP
rs769206392 240 dbSNP
rs1051636141 244 dbSNP
rs1351654717 247 dbSNP
rs1308801219 254 dbSNP
rs1453730773 258 dbSNP
rs1383187517 281 dbSNP
rs1400612617 310 dbSNP
rs749787829 331 dbSNP
rs932044871 334 dbSNP
rs1289424906 351 dbSNP
rs1420952883 353 dbSNP
rs1378018664 363 dbSNP
rs1157662485 370 dbSNP
rs922038772 373 dbSNP
rs1344607691 374 dbSNP
rs1370492385 387 dbSNP
rs112976805 408 dbSNP
rs1442295955 418 dbSNP
rs1207481385 422 dbSNP
rs942044562 422 dbSNP
rs1487343828 427 dbSNP
rs1285421257 428 dbSNP
rs1246902885 429 dbSNP
rs1361902557 430 dbSNP
rs1285686525 436 dbSNP
rs908090901 445 dbSNP
rs1318883827 446 dbSNP
rs1401830131 448 dbSNP
rs1358008167 454 dbSNP
rs1167568054 455 dbSNP
rs1297042061 462 dbSNP
rs984120119 468 dbSNP
rs970833130 471 dbSNP
rs1425923639 474 dbSNP
rs1161143597 476 dbSNP
rs1472673470 479 dbSNP
rs1374055680 480 dbSNP
rs1196403083 483 dbSNP
rs1477133418 484 dbSNP
rs1262516589 489 dbSNP
rs1223351685 490 dbSNP
rs1172006935 491 dbSNP
rs1480429932 492 dbSNP
rs1245497495 493 dbSNP
rs1201375673 494 dbSNP
rs1287957944 501 dbSNP
rs1452579224 504 dbSNP
rs1209537270 516 dbSNP
rs1355359537 518 dbSNP
rs1267548345 525 dbSNP
rs1220313421 526 dbSNP
rs1197674442 530 dbSNP
rs1136890 531 dbSNP
rs1315490477 532 dbSNP
rs1405003212 533 dbSNP
rs1259501704 535 dbSNP
rs1218727009 536 dbSNP
rs573453094 537 dbSNP
rs1273041928 538 dbSNP
rs1235083461 540 dbSNP
rs1464479955 541 dbSNP
rs1331520882 544 dbSNP
rs1328400422 548 dbSNP
rs1423514033 550 dbSNP
rs1444931594 552 dbSNP
rs1402532594 557 dbSNP
rs1332056018 561 dbSNP
rs1469358117 562 dbSNP
rs1423632900 566 dbSNP
rs1174848998 568 dbSNP
rs1478546662 569 dbSNP
rs372935682 574 dbSNP
rs369151397 579 dbSNP
rs375743272 581 dbSNP
rs1456210610 582 dbSNP
rs372422366 584 dbSNP
rs370114514 585 dbSNP
rs375712758 590 dbSNP
rs202230939 592 dbSNP
rs1446798328 593 dbSNP
rs1272578353 595 dbSNP
rs1435259764 597 dbSNP
rs1441359669 598 dbSNP
rs1276392522 618 dbSNP
rs1220916710 620 dbSNP
rs1345449372 621 dbSNP
rs1444991507 623 dbSNP
rs1400114438 624 dbSNP
rs1177765382 626 dbSNP
rs1416665378 637 dbSNP
rs1423065285 638 dbSNP
rs1172098199 639 dbSNP
rs1470606711 640 dbSNP
rs1240235704 654 dbSNP
rs1177045174 658 dbSNP
rs1456269365 678 dbSNP
rs1237355959 679 dbSNP
rs1210649276 685 dbSNP
rs1313911999 692 dbSNP
rs61772984 696 dbSNP
rs1275841671 697 dbSNP
rs1218110848 698 dbSNP
rs61772983 699 dbSNP
rs1353852726 700 dbSNP
rs61772982 704 dbSNP
rs61772981 707 dbSNP
rs61772980 713 dbSNP
rs61772979 715 dbSNP
rs1237580060 720 dbSNP
rs1310997964 720 dbSNP
rs1376545606 721 dbSNP
rs1337803130 725 dbSNP
rs1450760009 726 dbSNP
rs1357950897 733 dbSNP
rs1334139098 747 dbSNP
rs1401324979 753 dbSNP
rs1308335845 754 dbSNP
rs1382318741 758 dbSNP
rs1180660855 761 dbSNP
rs1435663960 762 dbSNP
rs1259042502 763 dbSNP
rs1439325294 767 dbSNP
rs1237704249 772 dbSNP
rs1379413227 776 dbSNP
rs1182256216 778 dbSNP
rs1210940908 779 dbSNP
rs138962300 779 dbSNP
rs1484143191 779 dbSNP
rs374777860 779 dbSNP
rs1377483737 780 dbSNP
rs1284119925 781 dbSNP
rs1379308407 781 dbSNP
rs1362466811 786 dbSNP
rs1296457517 787 dbSNP
rs1419276591 788 dbSNP
rs1366406874 791 dbSNP
rs1167226363 795 dbSNP
rs1411431473 800 dbSNP
rs1425334917 800 dbSNP
rs1181150819 802 dbSNP
rs1478107775 806 dbSNP
rs1310301512 808 dbSNP
rs1213850758 809 dbSNP
rs1487704105 810 dbSNP
rs1265631619 812 dbSNP
rs1223398827 815 dbSNP
rs1320276652 825 dbSNP
rs1289625798 828 dbSNP
rs1451942849 833 dbSNP
rs1342961612 840 dbSNP
rs1276918029 844 dbSNP
rs1399449325 848 dbSNP
rs1368486718 852 dbSNP
rs1295494495 861 dbSNP
rs1456598376 863 dbSNP
rs1347833945 868 dbSNP
rs1163844481 875 dbSNP
rs1466029458 879 dbSNP
rs1425653579 883 dbSNP
rs1191467501 887 dbSNP
rs1477206378 892 dbSNP
rs879010532 899 dbSNP
rs1357547200 909 dbSNP
rs1192504211 915 dbSNP
rs1265178467 922 dbSNP
rs7523697 924 dbSNP
rs1320500557 925 dbSNP
rs1256716974 938 dbSNP
rs1218628043 943 dbSNP
rs1312792947 944 dbSNP
rs1303501005 948 dbSNP
rs1385263807 950 dbSNP
rs1367193452 956 dbSNP
rs1415606283 958 dbSNP
rs1447205822 960 dbSNP
rs1402276798 962 dbSNP
rs1168428658 974 dbSNP
rs1461431422 975 dbSNP
rs377475427 976 dbSNP
rs1177635143 977 dbSNP
rs1266191993 979 dbSNP
rs1178943309 980 dbSNP
rs1459362051 988 dbSNP
rs1236749067 1004 dbSNP
rs745541118 1020 dbSNP
rs1198500450 1022 dbSNP
rs1483880849 1033 dbSNP
rs1257783554 1048 dbSNP
rs1231124276 1054 dbSNP
rs1311715147 1055 dbSNP
rs1310257413 1061 dbSNP
rs1242657275 1070 dbSNP
rs1378761591 1071 dbSNP
rs1329087874 1080 dbSNP
rs1390702789 1080 dbSNP
rs1402795947 1088 dbSNP
rs575566366 1098 dbSNP
rs1464104547 1105 dbSNP
rs1394017310 1109 dbSNP
rs1441168960 1118 dbSNP
rs1378807379 1127 dbSNP
rs1181565303 1129 dbSNP
rs1424804802 1146 dbSNP
rs1258829662 1148 dbSNP
rs1199312326 1151 dbSNP
rs1482959385 1152 dbSNP
rs1286841950 1159 dbSNP
rs1218985075 1161 dbSNP
rs1351813979 1162 dbSNP
rs1238022873 1175 dbSNP
rs1340914357 1185 dbSNP
rs1314760462 1187 dbSNP
rs1394237284 1201 dbSNP
rs1374256406 1202 dbSNP
rs1298316490 1205 dbSNP
rs1421085466 1206 dbSNP
rs1358205969 1207 dbSNP
rs1157672589 1218 dbSNP
rs1473325937 1226 dbSNP
rs1370619311 1232 dbSNP
rs1185975330 1235 dbSNP
rs1475169229 1239 dbSNP
rs1263937001 1247 dbSNP
rs1195908219 1248 dbSNP
rs1487372422 1249 dbSNP
rs1285575606 1262 dbSNP
rs1210728454 1265 dbSNP
rs1356721248 1266 dbSNP
rs1266999350 1267 dbSNP
rs1242471795 1272 dbSNP
rs1354763683 1277 dbSNP
rs113542441 1279 dbSNP
rs1337856489 1286 dbSNP
rs1317178379 1289 dbSNP
rs1405609680 1295 dbSNP
rs1393240475 1296 dbSNP
rs1161860058 1302 dbSNP
rs1461296650 1314 dbSNP
rs1424931680 1316 dbSNP
rs1173536887 1318 dbSNP
rs1476875656 1330 dbSNP
rs1241613595 1332 dbSNP
rs1199774320 1335 dbSNP
rs1453573680 1337 dbSNP
rs1269146490 1338 dbSNP
rs1211563225 1349 dbSNP
rs780834041 1350 dbSNP
rs941014885 1362 dbSNP
rs1258624052 1364 dbSNP
rs1220454206 1365 dbSNP
rs1315462844 1365 dbSNP
rs1269082324 1376 dbSNP
rs1436699559 1380 dbSNP
rs375098094 1396 dbSNP
rs1332443395 1403 dbSNP
rs1321222797 1405 dbSNP
rs1401557678 1407 dbSNP
rs1173388833 1412 dbSNP
rs1157167219 1415 dbSNP
rs1418849263 1422 dbSNP
rs1173261634 1426 dbSNP
rs1479074378 1444 dbSNP
rs1376097282 1445 dbSNP
rs1193310043 1456 dbSNP
rs1467855522 1465 dbSNP
rs1238574670 1467 dbSNP
rs1436041218 1470 dbSNP
rs1271618648 1472 dbSNP
rs1219275424 1477 dbSNP
rs1346592809 1499 dbSNP
rs1272705621 1501 dbSNP
rs1233128301 1503 dbSNP
rs1378027722 1508 dbSNP
rs1333830489 1514 dbSNP
rs1445153244 1532 dbSNP
rs1354444459 1537 dbSNP
rs1335492310 1539 dbSNP
rs7552371 1544 dbSNP
rs1400229242 1548 dbSNP
rs1173184374 1551 dbSNP
rs1440554350 1553 dbSNP
rs1380636289 1555 dbSNP
rs1180300518 1556 dbSNP
rs1232230073 1559 dbSNP
rs113050449 1560 dbSNP
rs1443584641 1566 dbSNP
rs1277584000 1576 dbSNP
rs1209660081 1579 dbSNP
rs1354004675 1592 dbSNP
rs1311066687 1593 dbSNP
rs1222390300 1594 dbSNP
rs1373136275 1597 dbSNP
rs1285286103 1614 dbSNP
rs1450829971 1618 dbSNP
rs1357431787 1623 dbSNP
rs1312383256 1631 dbSNP
rs1362666098 1632 dbSNP
rs1420485678 1632 dbSNP
rs1157154999 1644 dbSNP
rs1398726537 1645 dbSNP
rs1406999103 1647 dbSNP
rs1182311452 1655 dbSNP
rs371875109 1660 dbSNP
rs1254713248 1662 dbSNP
rs1186584632 1682 dbSNP
rs1488357013 1699 dbSNP
rs1287708918 1720 dbSNP
rs1213280600 1730 dbSNP
rs1316638749 1739 dbSNP
rs1291038004 1740 dbSNP
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rs1264719670 1823 dbSNP
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rs1293563860 1874 dbSNP
rs1381817623 1884 dbSNP
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rs1392090071 1902 dbSNP
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rs1167732289 1909 dbSNP
rs1427457300 1922 dbSNP
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rs1467374556 1949 dbSNP
rs1252770677 1953 dbSNP
rs1199778009 1959 dbSNP
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rs1250179090 1965 dbSNP
rs1226748995 1977 dbSNP
rs1312920512 1985 dbSNP
rs1303656098 1993 dbSNP
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rs1368427242 2010 dbSNP
rs1302449186 2018 dbSNP
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rs902059552 5412 dbSNP
rs1466733071 5413 dbSNP
rs1039577202 5426 dbSNP
rs1394172082 5429 dbSNP
rs369156169 5433 dbSNP
rs1167265272 5439 dbSNP
rs1378882877 5447 dbSNP
rs1196716938 5453 dbSNP
rs1479888779 5461 dbSNP
rs1252180709 5462 dbSNP
rs1184770130 5468 dbSNP
rs1436447525 5470 dbSNP
rs1272844918 5476 dbSNP
rs943134176 5483 dbSNP
rs4649143 5492 dbSNP
rs1048733324 5494 dbSNP
rs1290456594 5498 dbSNP
rs1411356821 5499 dbSNP
rs1333796609 5501 dbSNP
rs928981982 5505 dbSNP
rs1414948061 5509 dbSNP
rs918905876 5510 dbSNP
rs992114162 5512 dbSNP
rs939240014 5516 dbSNP
rs1468888794 5518 dbSNP
rs1412177802 5524 dbSNP
rs1160934603 5527 dbSNP
rs926487179 5528 dbSNP
rs373053184 5533 dbSNP
rs777760187 5539 dbSNP
rs1444628278 5551 dbSNP
rs1241890552 5563 dbSNP
rs1203049738 5564 dbSNP
rs1329934569 5565 dbSNP
rs1022101036 5567 dbSNP
rs1222301309 5576 dbSNP
rs1350294023 5589 dbSNP
rs990181579 5591 dbSNP
rs1278705336 5592 dbSNP
rs956063803 5593 dbSNP
rs1342182918 5597 dbSNP
rs1031631111 5602 dbSNP
rs1451199572 5610 dbSNP
rs1388775854 5615 dbSNP
rs997758074 5622 dbSNP
rs112164933 5630 dbSNP
rs1406874093 5644 dbSNP
rs1164182074 5646 dbSNP
rs1017788834 5649 dbSNP
rs1383854852 5652 dbSNP
rs1183546605 5659 dbSNP
rs1008111870 5660 dbSNP
rs1249955029 5664 dbSNP
rs371836763 5666 dbSNP
rs1290932706 5670 dbSNP
rs1048863706 5681 dbSNP
rs1361336080 5683 dbSNP
rs1245182794 5691 dbSNP
rs1312785621 5691 dbSNP
rs758218148 5697 dbSNP
rs1290089251 5700 dbSNP
rs897526902 5716 dbSNP
rs1056110831 5723 dbSNP
rs939254488 5728 dbSNP
rs1407389773 5729 dbSNP
rs1364122201 5740 dbSNP
rs1163397865 5742 dbSNP
rs113568159 5745 dbSNP
rs1392640457 5746 dbSNP
rs1184841981 5752 dbSNP
rs1475134657 5754 dbSNP
rs372177056 5758 dbSNP
rs1224095528 5759 dbSNP
rs946571256 5760 dbSNP
rs915062109 5761 dbSNP
rs1221524229 5768 dbSNP
rs1342764159 5768 dbSNP
rs990234106 5772 dbSNP
rs1297649183 5775 dbSNP
rs956117583 5788 dbSNP
rs1360696012 5793 dbSNP
rs924617152 5794 dbSNP
rs976030909 5795 dbSNP
rs1275024562 5797 dbSNP
rs778841731 5798 dbSNP
rs1363374367 5799 dbSNP
rs1302919571 5810 dbSNP
rs1430864224 5816 dbSNP
rs966332161 5820 dbSNP
rs1168961879 5826 dbSNP
rs796099101 5840 dbSNP
rs1193041993 5855 dbSNP
rs1479563505 5858 dbSNP
rs1268537968 5862 dbSNP
rs1198344811 5868 dbSNP
rs1483260796 5869 dbSNP
rs1252957755 5880 dbSNP
rs1018302322 5882 dbSNP
rs1306894527 5883 dbSNP
rs1278675762 5888 dbSNP
rs1007790241 5898 dbSNP
rs952350233 5907 dbSNP
rs1491377744 5912 dbSNP
rs113386697 5913 dbSNP
rs376027058 5913 dbSNP
rs1410751006 5914 dbSNP
rs756159630 5919 dbSNP
rs1027815762 5927 dbSNP
rs993252511 5929 dbSNP
rs1296909277 5937 dbSNP
rs1442092386 5943 dbSNP
rs897541505 5947 dbSNP
rs1056162254 5951 dbSNP
rs1360294321 5955 dbSNP
rs1003594157 5959 dbSNP
rs1468307656 5960 dbSNP
rs1428772593 5966 dbSNP
rs1160217284 5967 dbSNP
rs1472766309 5980 dbSNP
rs904846046 5988 dbSNP
rs750570750 5991 dbSNP
rs1480265342 6010 dbSNP
rs1238038098 6013 dbSNP
rs1320807267 6017 dbSNP
rs1262079788 6018 dbSNP
rs946652283 6023 dbSNP
rs767487837 6026 dbSNP
rs1052186499 6027 dbSNP
rs4630071 6035 dbSNP
rs924668264 6036 dbSNP
rs1380518623 6037 dbSNP
rs1339269210 6038 dbSNP
rs370726268 6040 dbSNP
rs1405465352 6042 dbSNP
rs966464193 6063 dbSNP
rs1455512175 6071 dbSNP
rs910548108 6071 dbSNP
rs1156652186 6084 dbSNP
rs556915161 6084 dbSNP
rs1418296999 6086 dbSNP
rs986820164 6087 dbSNP
rs1385715637 6092 dbSNP
rs1185381192 6096 dbSNP
rs1459554585 6097 dbSNP
rs1241966903 6099 dbSNP
rs1208857117 6132 dbSNP
rs952294693 6139 dbSNP
rs1258654703 6141 dbSNP
rs1238693145 6145 dbSNP
rs1322727864 6158 dbSNP
rs1317715059 6165 dbSNP
rs1027828957 6166 dbSNP
rs993643493 6169 dbSNP
rs976689562 6176 dbSNP
rs1298415337 6179 dbSNP
rs1384052586 6183 dbSNP
rs961806357 6185 dbSNP
rs1424195680 6196 dbSNP
rs1452734544 6200 dbSNP
rs1365987550 6205 dbSNP
rs1165293706 6209 dbSNP
rs1442669923 6209 dbSNP
rs1034798306 6210 dbSNP
rs1193265216 6220 dbSNP
rs1429793635 6230 dbSNP
rs1003276430 6234 dbSNP
rs1259176526 6234 dbSNP
rs904896258 6235 dbSNP
rs1294360569 6242 dbSNP
rs1044728859 6244 dbSNP
rs1359330330 6256 dbSNP
rs1275991179 6257 dbSNP
rs1229618400 6258 dbSNP
rs1324795038 6263 dbSNP
rs1295065562 6273 dbSNP
rs762057984 6281 dbSNP
rs1347665672 6282 dbSNP
rs1304730148 6286 dbSNP
rs1422581818 6302 dbSNP
rs1364829218 6306 dbSNP
rs1168451953 6315 dbSNP
rs1463024860 6321 dbSNP
rs1370816392 6327 dbSNP
rs1191895360 6344 dbSNP
rs1480556197 6345 dbSNP
rs1270669516 6353 dbSNP
rs893699559 6361 dbSNP
rs1490289857 6363 dbSNP
rs1274275530 6378 dbSNP
rs1198103631 6390 dbSNP
rs1052232141 6398 dbSNP
rs1338073572 6402 dbSNP
rs935193834 6404 dbSNP
rs1234143442 6410 dbSNP
rs1325913835 6411 dbSNP
rs1281633211 6414 dbSNP
rs1402805909 6430 dbSNP
rs1344674503 6440 dbSNP
rs1329344926 6441 dbSNP
rs1393045923 6442 dbSNP
rs900994432 6445 dbSNP
rs372022872 6446 dbSNP
rs1166807215 6457 dbSNP
rs1431203278 6458 dbSNP
rs968536232 6474 dbSNP
rs1173841313 6483 dbSNP
rs1480291033 6487 dbSNP
rs1040896507 6491 dbSNP
rs751754284 6500 dbSNP
rs944799350 6515 dbSNP
rs1184482385 6516 dbSNP
rs1436562507 6517 dbSNP
rs1250517790 6525 dbSNP
rs1204306783 6533 dbSNP
rs1462718635 6535 dbSNP
rs1261460044 6540 dbSNP
rs764476632 6546 dbSNP
rs1330141302 6549 dbSNP
rs6697196 6551 dbSNP
rs1241006157 6553 dbSNP
rs986108040 6556 dbSNP
rs1333843793 6565 dbSNP
rs1328116320 6573 dbSNP
rs1452667346 6593 dbSNP
rs1407698727 6596 dbSNP
rs930911411 6599 dbSNP
rs1468946729 6606 dbSNP
rs763240869 6606 dbSNP
rs920819454 6615 dbSNP
rs1160649192 6616 dbSNP
rs1468925260 6623 dbSNP
rs1363665741 6636 dbSNP
rs1184771381 6641 dbSNP
rs1463084915 6650 dbSNP
rs1241336677 6653 dbSNP
rs1203179256 6655 dbSNP
rs1447797553 6661 dbSNP
rs1286619683 6672 dbSNP
rs972298867 6674 dbSNP
rs1348306470 6677 dbSNP
rs1308393977 6678 dbSNP
rs1246582075 6680 dbSNP
rs1384965511 6688 dbSNP
rs1312261879 6690 dbSNP
rs1451362347 6692 dbSNP
rs962230502 6701 dbSNP
rs368787273 6721 dbSNP
rs111545443 6722 dbSNP
rs1384665071 6723 dbSNP
rs1164673499 6725 dbSNP
rs969131037 6735 dbSNP
rs1384000789 6736 dbSNP
rs1023726078 6739 dbSNP
rs1182993109 6743 dbSNP
rs113511029 6744 dbSNP
rs1244012227 6744 dbSNP
rs1191343285 6748 dbSNP
rs1446678981 6749 dbSNP
rs1223020394 6751 dbSNP
rs1361494779 6753 dbSNP
rs1289507202 6755 dbSNP
rs1227188264 6758 dbSNP
rs1362067538 6767 dbSNP
rs1010541065 6769 dbSNP
rs893459008 6771 dbSNP
rs1428196223 6773 dbSNP
rs1339509415 6782 dbSNP
rs1304129603 6784 dbSNP
rs1030899057 6786 dbSNP
rs1364191947 6787 dbSNP
rs1163533259 6794 dbSNP
rs1200563213 6796 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 10772.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgguUCCCUUACCGUCCCUUUa 5'
              ||| |||  ::|||||| 
Target 5' ----AGGUAAU-UUGGGGAAAa 3'
 		1 - 17
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000343255.5 | 3UTR | AGGUAAUUUGGGGAAAAGGAUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
223 hsa-miR-4446-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078060 PCTP phosphatidylcholine transfer protein 2 2
MIRT099072 FOXC1 forkhead box C1 2 2
MIRT130186 TXNIP thioredoxin interacting protein 2 2
MIRT148786 NARS asparaginyl-tRNA synthetase 2 2
MIRT261965 SEPHS1 selenophosphate synthetase 1 2 2
MIRT345867 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT409087 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT451883 SOD2 superoxide dismutase 2 2 4
MIRT469236 RHOB ras homolog family member B 2 2
MIRT469435 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT483055 FOXB1 forkhead box B1 2 8
MIRT484640 TBC1D5 TBC1 domain family member 5 2 6
MIRT493106 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT497307 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 2 2
MIRT497798 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT501273 SCARB2 scavenger receptor class B member 2 2 4
MIRT506756 KMT2D lysine methyltransferase 2D 2 2
MIRT511986 EEF2 eukaryotic translation elongation factor 2 2 4
MIRT513126 ZNF431 zinc finger protein 431 2 2
MIRT519733 ZNF394 zinc finger protein 394 2 4
MIRT520351 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT520542 TPPP tubulin polymerization promoting protein 2 8
MIRT530782 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 2
MIRT531112 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT532144 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 2 2
MIRT533208 WAPAL WAPL cohesin release factor 2 2
MIRT533419 TWF1 twinfilin actin binding protein 1 2 2
MIRT534063 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT534288 SLAIN2 SLAIN motif family member 2 2 2
MIRT537796 EFNB2 ephrin B2 2 2
MIRT538017 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538058 DMD dystrophin 2 2
MIRT538132 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT538680 CCDC80 coiled-coil domain containing 80 2 2
MIRT538788 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT542762 PPAP2B phospholipid phosphatase 3 2 2
MIRT546861 RAB10 RAB10, member RAS oncogene family 2 4
MIRT547418 MED4 mediator complex subunit 4 2 4
MIRT551633 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT552329 ZNF704 zinc finger protein 704 2 2
MIRT556124 MFSD9 major facilitator superfamily domain containing 9 2 4
MIRT559290 ATXN1 ataxin 1 2 2
MIRT562125 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563777 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 2 2
MIRT564430 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT566102 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT567126 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT571213 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT571939 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT571967 KIF21A kinesin family member 21A 2 2
MIRT606792 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 8
MIRT607351 TNS1 tensin 1 2 4
MIRT609416 GJB7 gap junction protein beta 7 2 4
MIRT609522 AZI2 5-azacytidine induced 2 2 4
MIRT611218 FAM174B family with sequence similarity 174 member B 2 2
MIRT611385 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT612053 KLB klotho beta 2 4
MIRT612102 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT612146 SIX1 SIX homeobox 1 2 4
MIRT612488 SIX3 SIX homeobox 3 2 4
MIRT613685 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613763 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT613876 FGD1 FYVE, RhoGEF and PH domain containing 1 2 2
MIRT613965 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 4
MIRT614894 PAPOLG poly(A) polymerase gamma 2 2
MIRT614912 NFIA nuclear factor I A 2 2
MIRT615013 ERGIC2 ERGIC and golgi 2 2 2
MIRT615106 BCL7A BCL tumor suppressor 7A 2 2
MIRT615242 FAM227A family with sequence similarity 227 member A 2 4
MIRT615695 NEGR1 neuronal growth regulator 1 2 2
MIRT615956 ERBB3 erb-b2 receptor tyrosine kinase 3 2 4
MIRT615979 FSTL4 follistatin like 4 2 2
MIRT616053 PTPRE protein tyrosine phosphatase, receptor type E 2 4
MIRT616073 TBX2 T-box 2 2 4
MIRT616234 NPAS3 neuronal PAS domain protein 3 2 2
MIRT616306 CELF2 CUGBP Elav-like family member 2 2 2
MIRT616474 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616662 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616887 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2 2
MIRT616902 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617025 SYT6 synaptotagmin 6 2 2
MIRT617162 SLC16A5 solute carrier family 16 member 5 2 2
MIRT617318 DPF3 double PHD fingers 3 2 2
MIRT617792 CHRM2 cholinergic receptor muscarinic 2 2 2
MIRT618418 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT618663 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT620212 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620413 TFDP3 transcription factor Dp family member 3 2 2
MIRT620667 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620709 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT620956 SFT2D2 SFT2 domain containing 2 2 2
MIRT621225 LMAN1 lectin, mannose binding 1 2 2
MIRT621333 SLC11A1 solute carrier family 11 member 1 2 2
MIRT621696 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT623484 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623777 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT624215 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT624675 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT627369 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT628252 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT630790 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT635631 PRR15L proline rich 15 like 2 2
MIRT636425 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT637295 ACTN2 actinin alpha 2 2 2
MIRT637345 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637842 SLC2A9 solute carrier family 2 member 9 2 2
MIRT638327 RCAN1 regulator of calcineurin 1 2 2
MIRT638375 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638751 EPHA4 EPH receptor A4 2 2
MIRT638965 ARHGAP6 Rho GTPase activating protein 6 2 2
MIRT639094 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT639172 CEP70 centrosomal protein 70 2 2
MIRT639254 SLC38A1 solute carrier family 38 member 1 2 4
MIRT639368 ZCCHC24 zinc finger CCHC-type containing 24 2 4
MIRT639504 CACNA1G calcium voltage-gated channel subunit alpha1 G 2 2
MIRT639644 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT640486 EXOC5 exocyst complex component 5 2 2
MIRT641424 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641550 LIPG lipase G, endothelial type 2 2
MIRT642180 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT642656 RGS6 regulator of G protein signaling 6 2 2
MIRT642873 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT643355 TRIM10 tripartite motif containing 10 2 2
MIRT643531 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT643998 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644105 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2 2
MIRT644421 VDR vitamin D receptor 2 2
MIRT644481 SLFN12 schlafen family member 12 2 2
MIRT644573 SPOP speckle type BTB/POZ protein 2 2
MIRT645354 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT645383 FBLIM1 filamin binding LIM protein 1 2 2
MIRT645758 SURF6 surfeit 6 2 2
MIRT646060 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT646194 DUSP10 dual specificity phosphatase 10 2 2
MIRT647915 RGS5 regulator of G protein signaling 5 2 2
MIRT649216 AMMECR1L AMMECR1 like 2 2
MIRT649265 C17orf64 chromosome 17 open reading frame 64 2 2
MIRT649522 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT649605 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650392 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT650835 SEMA4G semaphorin 4G 2 2
MIRT651273 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651674 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT651763 VASP vasodilator stimulated phosphoprotein 2 2
MIRT652250 TPD52L3 tumor protein D52 like 3 2 2
MIRT652277 TOM1L2 target of myb1 like 2 membrane trafficking protein 2 2
MIRT652316 TNFSF15 TNF superfamily member 15 2 2
MIRT652342 TMOD3 tropomodulin 3 2 2
MIRT652373 TMEM57 transmembrane protein 57 2 2
MIRT652438 TMEM236 transmembrane protein 236 2 2
MIRT652723 TGFB2 transforming growth factor beta 2 2 2
MIRT652752 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653310 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT653327 SMIM18 small integral membrane protein 18 2 2
MIRT653406 SLC7A2 solute carrier family 7 member 2 2 2
MIRT653512 SLC41A1 solute carrier family 41 member 1 2 2
MIRT653912 SERPINC1 serpin family C member 1 2 2
MIRT654111 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654153 RORB RAR related orphan receptor B 2 2
MIRT654548 RAB14 RAB14, member RAS oncogene family 2 2
MIRT654920 POLR3D RNA polymerase III subunit D 2 2
MIRT655169 PHF19 PHD finger protein 19 2 2
MIRT655412 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT655784 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT655836 NGDN neuroguidin 2 2
MIRT656079 MTA3 metastasis associated 1 family member 3 2 2
MIRT656404 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656720 LMLN leishmanolysin like peptidase 2 2
MIRT656774 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT656922 KIAA1462 junctional cadherin 5 associated 2 2
MIRT657004 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT657477 HCAR2 hydroxycarboxylic acid receptor 2 2 2
MIRT657539 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657911 GCC1 GRIP and coiled-coil domain containing 1 2 2
MIRT658478 EXOC8 exocyst complex component 8 2 2
MIRT658612 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT658823 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658965 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT659706 CCDC93 coiled-coil domain containing 93 2 2
MIRT660034 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT660108 BTBD3 BTB domain containing 3 2 2
MIRT660697 AMOTL2 angiomotin like 2 2 2
MIRT660763 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660884 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT660956 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661217 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661596 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661624 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662430 EID2 EP300 interacting inhibitor of differentiation 2 2 2
MIRT664816 NOX5 NADPH oxidase 5 2 2
MIRT665548 UCHL5 ubiquitin C-terminal hydrolase L5 2 2
MIRT665815 TMEM161B transmembrane protein 161B 2 2
MIRT666668 RBM23 RNA binding motif protein 23 2 2
MIRT667995 HCFC2 host cell factor C2 2 2
MIRT668064 GPR180 G protein-coupled receptor 180 2 2
MIRT669056 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT669637 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT699368 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699882 RUNX1 runt related transcription factor 1 2 2
MIRT703834 ETV3 ETS variant 3 2 2
MIRT708528 ZNF177 zinc finger protein 177 2 2
MIRT709696 DMWD DM1 locus, WD repeat containing 2 2
MIRT710381 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT710639 GLUL glutamate-ammonia ligase 2 2
MIRT711584 SETD1A SET domain containing 1A 2 2
MIRT713208 FAM13A family with sequence similarity 13 member A 2 2
MIRT714129 IL20RB interleukin 20 receptor subunit beta 2 2
MIRT714204 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT714733 CCNO cyclin O 2 2
MIRT714761 ZNF462 zinc finger protein 462 2 2
MIRT715624 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715755 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT716075 RNF150 ring finger protein 150 2 2
MIRT716179 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT717450 RWDD2A RWD domain containing 2A 2 2
MIRT717866 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT720964 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT721564 SLC5A12 solute carrier family 5 member 12 2 2
MIRT722348 BAG2 BCL2 associated athanogene 2 2 2
MIRT723235 BTLA B and T lymphocyte associated 2 2
MIRT724018 LMBRD2 LMBR1 domain containing 2 2 2
MIRT724507 KLHL5 kelch like family member 5 2 2
MIRT725478 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4446 Aed Therapy sensitive High Epilepsy tissue
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4446 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4446 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4446 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4446-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4446-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4446-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4446-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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