pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol SPRY4   
Synonyms HH17
Description sprouty RTK signaling antagonist 4
Transcript NM_001127496   
Other Transcripts NM_030964   
Expression
Putative miRNA Targets on SPRY4
3'UTR of SPRY4
(miRNA target sites are highlighted)
>SPRY4|NM_001127496|3'UTR
   1 CAGTTTGTGTCGAAGCCCCAGTGCTCTGCCTGGAAACCTGGTTCTCTTCTGACATCTAAGAAGACTGCAGCAAGGTCAGA
  81 GGTTTTAGCCTCCTGAGGCTGACCTTGCTAGTCTGCCCACTCCCTACCCCCAGCTTCGGAAAATACAGAGACCACCACCA
 161 CGTACCCTGTATTCCCCAAGGTGATGAAGAAGCACTTTGGGGCTTTTTTTCAGGGTCCTGAAACTTTGTGTCAAACAGAC
 241 AATGCAGGGGCAGGGTGTGGTTTGGGGGGAAATTTTTCTTTTTCAGAAGACAGAACACAGATGTGGACACATATCCGGAA
 321 ACTGCAGCTGCTTGAATGCCTTCCCAGCCCCTCCTTCTCCCTCCCTCCCTCCGCCCCCCCCCCCTTCCTCTTTTCCATTG
 401 TCTTTGGCTCTCACAGGAGCTAGCTGCCTGGGAGGAATTGTTAACTGAGTACCAGGGTACCTTTAAAGAAGACCCTTGGA
 481 GTCTTCTATACCTTCTTCTCCTTCCCCATCTCACTCCACCCCACTTTGTCCCTGATGTCTTGGGGAAGGTGTAGAACACC
 561 CTAGCAGTTCCTATTGTATATACTTGGGAGCCACTGAGAACAGAGGACGGCCAGTGAGTCCAAGCCTCGTTCCTCCTTCT
 641 GCCTCCCCGGAGCCACAGGATGGATTTAGGAGCCACTGCTCAGTGCACTTCTCCCTTCCAACTGCATCAACTAACTCTCG
 721 GGGGTGTTCTGCTCACCACACCGTCCTTCGGTTCTTACTGAGTCACAGACTCGCCTGCCCACTACGTGTCCTGGGTTCTC
 801 TCTACTCAGATCCCTTCCAGAAACTTTATATGGGTAGAGGAAGCCAGGGCGGCAAATGCGAGACCAAATATCATTTTGCC
 881 AATGAGTCTGAGGCTGTGGTCTCTGGATCCAGTCATTATGTTTTTATAGAATAATTAAACCGGATGCTAACGGTGTTTTA
 961 AAAAATAATAATAAAACAACTTGTTTCCTTTTGGCCACCCCCAGGAAGGGCTGATTTCAAAATCTGGGGGCGAGCAACCT
1041 CAAGGAACACAATTTCCCTCCCTATCAACAAGAGGATTTTAACAGCAAAGAAGAGAGGCAGCACCTCCCATTGGCAGAAT
1121 GACCGCTGAGCCAGGCTGGGTTTGGGTTTCTTCTCTTCTGATTCTGCTGCTCACTGTCATAGCCTTTTGTGTATAGTGAT
1201 GTGTCTGTATCTTTAATGTAAATAGAGAGATGATGAAAAAAGAGTCTATTTTAGTGTTAGGAAGCCCCAGCAGGGGAGTC
1281 GGAAGAGCTTGGAAGAGCTGGGGAGAGGGTAGGGGAAAGGTTTTTCCAGGGGCCACTGGGTTTGAGCCCTGCTTCTGTGC
1361 ACAGCCACACCACCCTCTCCCGACAGCCCTCAAAGACGTAGCAACTCTTTCTCTCAAGGTGCTAAAGGACTCAGAAGGTG
1441 CAGCACGTCCAGTGGGTAGGTACTTGTTGCATGCAAAAGCTGTAGTGTATCTGGTCCTTCCTCCCCAGCTTTTGTGTGGG
1521 GTTCTTGCTTTGTGTGGTATTTTGTTTTCCCCTCTAATGAGAGGGCATGGCCTGAGTCAGAAGAGCTACCCCAGGTGAAA
1601 CTGGAAGTGCATGAGGCAGAGCGTCCGTAGCATTTCCAGTTTGTTCTGTATAGGAACAGAGGTGCCTCCGGGAAGGAGGC
1681 AGCGAGGTAGGTAGCTATGATAGGCACCTAATGCTTCTCAAGGACTTATTTTTTCCTTCTTGAAGACTAGTAGTAACATC
1761 TTATGATTTAGAGTAAGTTGATTGTAACCATAGGTATTTATTGATTGGAGGAAGGGAGGGTCATATTATTTTCGGCTTTA
1841 TTTATGTAACATTTGCTAGCTTGTAAAAGGCGAATGTGAAATATTGCATCTGCATTTTCCAAGGCTGATTCGTGTAGCTA
1921 CCCTTGCCACAGTTGTGACGGATGTATGGATGTTCTTGAACATTTCAGAAGGAGTGGTAGAAAAAAACACACATTCAGCC
2001 AACCACTTATATGAATTGAATGTATCAGAAGTGTACTGAAGGGACTGGAGATGGTTTTCCTCAGATGAGGGGGCCCCAAA
2081 ATTGATAGTGCACATCTGCACGCTTTCTGCGAGGCCTCAGAACTTCCCAGGGCCCCTCCCTCAAATTGTCTCCATGGGAA
2161 ACTTGACCCAGTGGCAAGTTGCACTTTGGTGATCTTGGTGGTCTACACACCCGTTCTGTGGAGAGTCGATTTACATAAGC
2241 TGTGTATACACACACACACACACACACACACACCCCTACCCCACACTGACTGTCTACCGACAAAGACCCTATTTCCTGGC
2321 AAACGGCCTCCTGAACCCTGACTTTTTGTGTACATACTTGTAAACACGGATTTTTCTGGGTTTTGGTTTGCTTTTTCCTT
2401 TTTTCCCCCTGCCCCTGTTCTAGCTTGTTCTTCTTGGTTTGCTTTCAACCTGCTTGATGGATGTCTGCAGAGTGCTCTCT
2481 AAGAGTCCACCTCAGTGCCTCGTGTGCTCAGTGGTCATGGGAAAGGAGCGAAGGAACCATCCTTGGTTCTCCCAGCTTGG
2561 TTGTGTAGCAATCCCTCAGCATTGTTTTTCTCAGCTTCTTGGCAAAAATTAAAACAACAACAACAACAACAACAACAACA
2641 ACAAACAGAAGGATAAACTGGCTTGCCTGTGGACCCTCCCCGGCTCTGGGGCCAGTCGAGAGCCACTGAGGGACCCAGCA
2721 CTCAGAGACACAACACACATGTGTAGCTGCTTCTGGCTGAGTGTGTTTCCTGTCACCAATGGCCTGTTTGGCTGGACGAT
2801 GCCTCGGCTTGACCTTTTTTGAAAAGTGCTGGTTAGTTCCCGCCCCTGGTAAACCTGGGGTAGGTGGGGGTTCTGTCTTA
2881 ACTCGAGGGGCACCTGGGATCCAGGACGCTTCTAGGGGGCTCTGGCTGCCCGTGTTAATGAAGGACAGCGCTTCCGCGAG
2961 CACCCTGGGAACTGGGTCTTGGGTAGCAAAGCCCTCCCAGAGAAAAGATTGGGCACAACTAAGGCTTTCCTGAGCAGGAA
3041 GGGGGTGAAGACCAATCCCTTCCTTTGGTCCTTTGGTACGCACCCCCTCAGAGCTGAGATGGAAGACATGGCTAGTTCTT
3121 TTCAGCCTTGTGGAGCCTGTCAGTCGCCATCATACCTCGAGTGAGGCCCAGCTAGATAATGACTTGTCCAAGATGGCACA
3201 CGTGGAAAGTTGATCTGCACCAGAACCCGGATGACTGTCACCTTGAAGCATCCTGTTCTCCTTCTGTGCTGTCCCAGGAA
3281 GTGTCTGGCGGGCGTGGGCAGCACAGCTCTACACTGTACGATTCACTAGGGCATCCTGCGAGCCTCACTAGCCTTCTGGT
3361 TCATGCCTTTGACAAGCATTTTTGTGCCCCCTCTGCTTACTGTGACAGTCGATGATGAATCTTGCGTTGCCATTTTCTGC
3441 TGTGGGTAACTGCGTGCAGTGTCTTGCCTTGCTTTCTCTTCTTACTGTCCCACAGCTTGGTTTCATGTTACAAACAGAAA
3521 AGCTCGAGGCTCCCACCCCGCCACATCCCAACTTCATTTCCCCCTCACTGTAGCCCATTTCCACCCCACCACAAAGTTGC
3601 CACAGGTTTTCTTTGTATAGAATATTTATTTTGAAGCTCTATTTTAATAGTATTTATTTTAGAAAGTCTACTATTGTAAG
3681 AGTTCTTCTGTTTGTGAAGAAAAAAACAAGTTAAAAACTGAATGTACTGATTTAGAAAATATATATAAATATATATTGTT
3761 AAATATACACGGGACTGCCGTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuuCAUUGAAGGUGAACCga 5'
              |||   | :||||||  
Target 5' tattGTA---TATACTTGGga 3'
572 - 589 126.00 -7.90
2
miRNA  3' auUUCAUUGAAGGUGAACCGa 5'
            || | ::|||| :||||| 
Target 5' acAACTTGTTTCCTTTTGGCc 3'
976 - 996 123.00 -12.10
3
miRNA  3' auuucaUUGAAGGUGAACCGa 5'
                |:|||   |||||| 
Target 5' tttctcAGCTT---CTTGGCa 3'
2587 - 2604 123.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14145057 12 COSMIC
COSN30535509 41 COSMIC
COSN20528783 370 COSMIC
COSN6510502 373 COSMIC
COSN20101982 374 COSMIC
COSN20091276 375 COSMIC
COSN16001042 479 COSMIC
COSN19588040 550 COSMIC
COSN18806595 694 COSMIC
COSN5069985 698 COSMIC
COSN31962484 771 COSMIC
COSN19154962 772 COSMIC
COSN27707217 859 COSMIC
COSN195736 890 COSMIC
COSN30173507 901 COSMIC
COSN31482887 929 COSMIC
COSN31537471 941 COSMIC
COSN20629263 978 COSMIC
COSN6865648 1120 COSMIC
COSN32062631 1229 COSMIC
COSN31544697 1280 COSMIC
COSN31481549 1381 COSMIC
COSN23729682 1781 COSMIC
COSN29550603 1871 COSMIC
COSN20091275 1914 COSMIC
COSN31594554 1948 COSMIC
COSN9408793 2115 COSMIC
COSN20101976 2123 COSMIC
COSN31555092 2210 COSMIC
COSN27271005 2247 COSMIC
COSN27573907 2247 COSMIC
COSN6510501 2247 COSMIC
COSN23939876 2272 COSMIC
COSN28765954 2303 COSMIC
COSN20101970 2522 COSMIC
COSN6865645 2532 COSMIC
COSN20101965 2613 COSMIC
COSN20501064 2636 COSMIC
COSN21098655 2753 COSMIC
COSN29270405 2869 COSMIC
COSN14963469 2955 COSMIC
COSN20101959 3009 COSMIC
COSN6583901 3229 COSMIC
COSN7877952 3379 COSMIC
COSN2073655 3693 COSMIC
COSN31520432 3715 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748212197 2 dbSNP
rs777347198 3 dbSNP
rs769196353 4 dbSNP
rs747414690 6 dbSNP
rs528463342 7 dbSNP
rs1277360020 9 dbSNP
rs758646143 11 dbSNP
rs376107467 12 dbSNP
rs778515546 18 dbSNP
rs756799416 19 dbSNP
rs1392911071 20 dbSNP
rs753341165 22 dbSNP
rs1406256442 23 dbSNP
rs772065888 28 dbSNP
rs951277676 32 dbSNP
rs756083952 37 dbSNP
rs1216039217 39 dbSNP
rs75645175 43 dbSNP
rs1295149203 44 dbSNP
rs144313996 46 dbSNP
rs1211240562 49 dbSNP
rs377361633 50 dbSNP
rs1440246656 53 dbSNP
rs1273503129 54 dbSNP
rs1237367948 57 dbSNP
rs1476028642 63 dbSNP
rs532421076 66 dbSNP
rs186184225 70 dbSNP
rs1436385948 73 dbSNP
rs901008283 75 dbSNP
rs866175458 76 dbSNP
rs934022286 81 dbSNP
rs1174556685 82 dbSNP
rs1404652544 92 dbSNP
rs1412795714 95 dbSNP
rs1039982707 96 dbSNP
rs112369222 98 dbSNP
rs889227396 99 dbSNP
rs1054439694 102 dbSNP
rs972699467 104 dbSNP
rs962728538 107 dbSNP
rs1234543078 121 dbSNP
rs936003601 126 dbSNP
rs924826679 128 dbSNP
rs181452240 130 dbSNP
rs1481218922 131 dbSNP
rs1218054752 137 dbSNP
rs950320645 138 dbSNP
rs1284358174 140 dbSNP
rs1190471769 145 dbSNP
rs917418628 148 dbSNP
rs1448066086 152 dbSNP
rs984721566 153 dbSNP
rs1475681502 158 dbSNP
rs1464692581 159 dbSNP
rs778068040 160 dbSNP
rs937089378 161 dbSNP
rs971098226 162 dbSNP
rs1458719364 166 dbSNP
rs1156915589 179 dbSNP
rs10040443 181 dbSNP
rs1267606126 193 dbSNP
rs1441311934 198 dbSNP
rs1325280520 200 dbSNP
rs1010432624 201 dbSNP
rs983723932 206 dbSNP
rs188723280 208 dbSNP
rs1033131784 211 dbSNP
rs1435382606 211 dbSNP
rs1226069827 212 dbSNP
rs1276910344 213 dbSNP
rs1007107211 227 dbSNP
rs1363116906 228 dbSNP
rs1300392195 237 dbSNP
rs1025476042 240 dbSNP
rs779099606 242 dbSNP
rs1363753953 248 dbSNP
rs965708577 264 dbSNP
rs1233501807 266 dbSNP
rs866245064 268 dbSNP
rs184858338 269 dbSNP
rs1157076320 271 dbSNP
rs1470747558 272 dbSNP
rs1411052240 282 dbSNP
rs889182262 284 dbSNP
rs1164764076 285 dbSNP
rs558541919 290 dbSNP
rs1410286522 303 dbSNP
rs1033105194 311 dbSNP
rs1351985073 314 dbSNP
rs1407383309 315 dbSNP
rs1000161069 316 dbSNP
rs538649076 317 dbSNP
rs1448854669 320 dbSNP
rs1041776312 322 dbSNP
rs1350397659 326 dbSNP
rs950319529 328 dbSNP
rs60282045 338 dbSNP
rs1184334665 352 dbSNP
rs1484348064 356 dbSNP
rs139604352 360 dbSNP
rs1209719613 362 dbSNP
rs1484161759 364 dbSNP
rs1308380667 366 dbSNP
rs1251246645 368 dbSNP
rs1277228793 370 dbSNP
rs1226815078 371 dbSNP
rs1342151973 372 dbSNP
rs909875083 373 dbSNP
rs1315095370 374 dbSNP
rs996728703 375 dbSNP
rs60006206 376 dbSNP
rs1376383157 377 dbSNP
rs991236892 378 dbSNP
rs937236223 379 dbSNP
rs866841709 380 dbSNP
rs1356053384 381 dbSNP
rs1202283690 382 dbSNP
rs1253916221 382 dbSNP
rs1193616803 383 dbSNP
rs1166554740 384 dbSNP
rs1491458082 384 dbSNP
rs1400620333 385 dbSNP
rs1467094179 385 dbSNP
rs1491438380 385 dbSNP
rs201449499 385 dbSNP
rs398065271 385 dbSNP
rs57741967 385 dbSNP
rs763276150 385 dbSNP
rs767888803 385 dbSNP
rs1396015661 386 dbSNP
rs537227779 393 dbSNP
rs1367842335 397 dbSNP
rs1055944889 398 dbSNP
rs1385842414 409 dbSNP
rs1165421042 415 dbSNP
rs1425589026 416 dbSNP
rs1235445620 417 dbSNP
rs1254399474 422 dbSNP
rs1482884087 423 dbSNP
rs1209323085 426 dbSNP
rs770016658 426 dbSNP
rs1249641552 428 dbSNP
rs1463337862 431 dbSNP
rs192420502 432 dbSNP
rs1187730680 437 dbSNP
rs1267528669 441 dbSNP
rs927231041 453 dbSNP
rs981212977 456 dbSNP
rs1411723421 457 dbSNP
rs1465951554 460 dbSNP
rs937519811 464 dbSNP
rs1160614014 466 dbSNP
rs1391512139 470 dbSNP
rs909599918 474 dbSNP
rs983838484 475 dbSNP
rs1299248681 476 dbSNP
rs1311731807 479 dbSNP
rs548516871 481 dbSNP
rs1481115220 486 dbSNP
rs1269893938 492 dbSNP
rs1326997807 494 dbSNP
rs918244042 495 dbSNP
rs1265865606 498 dbSNP
rs866196547 501 dbSNP
rs1189137790 508 dbSNP
rs1266025508 512 dbSNP
rs1203498211 517 dbSNP
rs1183724013 518 dbSNP
rs1414760553 519 dbSNP
rs1456169550 556 dbSNP
rs1483000749 557 dbSNP
rs535294002 559 dbSNP
rs965305540 561 dbSNP
rs1459623107 562 dbSNP
rs1018625117 570 dbSNP
rs985281002 572 dbSNP
rs988577873 573 dbSNP
rs1410437437 579 dbSNP
rs1188763047 584 dbSNP
rs958116060 593 dbSNP
rs878862647 596 dbSNP
rs566033247 597 dbSNP
rs1290288274 603 dbSNP
rs1486901680 604 dbSNP
rs781382040 606 dbSNP
rs116820103 607 dbSNP
rs1264431001 608 dbSNP
rs1206665685 609 dbSNP
rs1351997617 613 dbSNP
rs1471881139 616 dbSNP
rs1305933853 626 dbSNP
rs532409424 629 dbSNP
rs1415190031 632 dbSNP
rs1006984968 634 dbSNP
rs1163123265 636 dbSNP
rs1365127176 638 dbSNP
rs1430704689 641 dbSNP
rs1309925026 644 dbSNP
rs189383335 646 dbSNP
rs890011351 648 dbSNP
rs896041476 649 dbSNP
rs1381288042 656 dbSNP
rs867152811 660 dbSNP
rs1056458158 679 dbSNP
rs1295144820 680 dbSNP
rs1342427836 684 dbSNP
rs1029906232 700 dbSNP
rs998461642 701 dbSNP
rs1482416192 705 dbSNP
rs369812274 714 dbSNP
rs1238487515 717 dbSNP
rs937486616 718 dbSNP
rs1484531689 719 dbSNP
rs1180462359 720 dbSNP
rs888611173 720 dbSNP
rs1450292010 721 dbSNP
rs1048578055 724 dbSNP
rs1409409035 729 dbSNP
rs78225060 730 dbSNP
rs1360815342 736 dbSNP
rs1445820026 741 dbSNP
rs918358453 742 dbSNP
rs184161862 743 dbSNP
rs1180317749 745 dbSNP
rs1230369726 749 dbSNP
rs540872366 750 dbSNP
rs572329338 761 dbSNP
rs1219243269 766 dbSNP
rs1280195724 767 dbSNP
rs1314452577 772 dbSNP
rs1231669410 773 dbSNP
rs1208686680 775 dbSNP
rs375174131 777 dbSNP
rs985781985 780 dbSNP
rs958017036 783 dbSNP
rs1465589941 784 dbSNP
rs925096760 786 dbSNP
rs1246345428 794 dbSNP
rs1472431670 799 dbSNP
rs558069996 800 dbSNP
rs372185589 808 dbSNP
rs888533533 808 dbSNP
rs1055110345 815 dbSNP
rs977945017 817 dbSNP
rs967433255 819 dbSNP
rs938027237 827 dbSNP
rs1389330374 829 dbSNP
rs1264321805 830 dbSNP
rs538067643 831 dbSNP
rs1330637006 839 dbSNP
rs1325471756 850 dbSNP
rs192584471 851 dbSNP
rs1276071239 852 dbSNP
rs960316130 853 dbSNP
rs545020288 859 dbSNP
rs549166651 860 dbSNP
rs75244710 871 dbSNP
rs989051727 879 dbSNP
rs1048525420 881 dbSNP
rs1210956946 882 dbSNP
rs1389976405 901 dbSNP
rs1292991760 903 dbSNP
rs957119371 908 dbSNP
rs555972210 913 dbSNP
rs1199913702 916 dbSNP
rs1248700492 923 dbSNP
rs1477061120 934 dbSNP
rs115016925 940 dbSNP
rs1390963065 941 dbSNP
rs1041199403 942 dbSNP
rs953674989 944 dbSNP
rs573673137 950 dbSNP
rs757170378 951 dbSNP
rs796127789 960 dbSNP
rs1405565708 965 dbSNP
rs998428960 966 dbSNP
rs1378571837 967 dbSNP
rs555095399 969 dbSNP
rs1351639955 975 dbSNP
rs961630207 975 dbSNP
rs1230817450 980 dbSNP
rs1278125008 980 dbSNP
rs943675695 983 dbSNP
rs1210848577 991 dbSNP
rs749438681 994 dbSNP
rs1292214867 995 dbSNP
rs534912835 997 dbSNP
rs1431927182 998 dbSNP
rs1221821924 1001 dbSNP
rs1252712765 1010 dbSNP
rs1267218688 1016 dbSNP
rs1473511780 1021 dbSNP
rs1179982684 1027 dbSNP
rs1015724431 1028 dbSNP
rs753857616 1031 dbSNP
rs888509645 1037 dbSNP
rs1049437091 1039 dbSNP
rs1265709087 1041 dbSNP
rs764176322 1047 dbSNP
rs936557515 1048 dbSNP
rs1207694148 1058 dbSNP
rs1388056204 1059 dbSNP
rs566021103 1062 dbSNP
rs1323894361 1063 dbSNP
rs925211127 1066 dbSNP
rs1002270749 1072 dbSNP
rs1327395432 1072 dbSNP
rs977893213 1072 dbSNP
rs1335695309 1078 dbSNP
rs1230857014 1083 dbSNP
rs906543344 1087 dbSNP
rs1245571389 1095 dbSNP
rs748138361 1095 dbSNP
rs966543373 1103 dbSNP
rs1484047276 1104 dbSNP
rs1046417138 1106 dbSNP
rs949938904 1109 dbSNP
rs1249647636 1114 dbSNP
rs913157438 1124 dbSNP
rs755959134 1125 dbSNP
rs1366542895 1137 dbSNP
rs1443611037 1158 dbSNP
rs1367426851 1159 dbSNP
rs1168787560 1160 dbSNP
rs935817097 1160 dbSNP
rs993319299 1169 dbSNP
rs925832299 1176 dbSNP
rs1427195222 1179 dbSNP
rs35899217 1179 dbSNP
rs1318699426 1183 dbSNP
rs960184123 1190 dbSNP
rs965391582 1196 dbSNP
rs1396394986 1199 dbSNP
rs1403246291 1209 dbSNP
rs1174561679 1227 dbSNP
rs1336520651 1231 dbSNP
rs1381100748 1235 dbSNP
rs1452393810 1236 dbSNP
rs1344587917 1242 dbSNP
rs552497253 1242 dbSNP
rs1034750407 1248 dbSNP
rs1250885557 1255 dbSNP
rs538626015 1259 dbSNP
rs1345594143 1261 dbSNP
rs1001565438 1270 dbSNP
rs569750561 1277 dbSNP
rs1377431311 1278 dbSNP
rs1027204150 1280 dbSNP
rs1451937909 1281 dbSNP
rs1460675013 1285 dbSNP
rs1245657659 1290 dbSNP
rs1249444242 1293 dbSNP
rs1187427861 1295 dbSNP
rs1461472244 1296 dbSNP
rs1257773635 1297 dbSNP
rs1174774257 1300 dbSNP
rs1198402879 1300 dbSNP
rs1404571960 1305 dbSNP
rs1469551758 1307 dbSNP
rs922228739 1308 dbSNP
rs1198793411 1321 dbSNP
rs994260296 1324 dbSNP
rs1294917344 1326 dbSNP
rs976418196 1326 dbSNP
rs777844765 1332 dbSNP
rs549923660 1333 dbSNP
rs1235551761 1344 dbSNP
rs961628040 1353 dbSNP
rs1251734619 1354 dbSNP
rs752605283 1360 dbSNP
rs1269861621 1362 dbSNP
rs897329391 1367 dbSNP
rs1005830479 1369 dbSNP
rs1185619926 1376 dbSNP
rs566912745 1379 dbSNP
rs1041252799 1381 dbSNP
rs952975737 1382 dbSNP
rs1427742247 1389 dbSNP
rs1434408563 1397 dbSNP
rs1160361510 1398 dbSNP
rs1391350030 1405 dbSNP
rs1452110635 1411 dbSNP
rs530161072 1414 dbSNP
rs767129407 1417 dbSNP
rs546716118 1435 dbSNP
rs1008382811 1436 dbSNP
rs1388536595 1437 dbSNP
rs889569726 1440 dbSNP
rs906636450 1446 dbSNP
rs1046357334 1447 dbSNP
rs1049839551 1456 dbSNP
rs936336826 1460 dbSNP
rs1289954584 1466 dbSNP
rs1314856359 1470 dbSNP
rs561234767 1477 dbSNP
rs1214842697 1479 dbSNP
rs759121716 1482 dbSNP
rs142714597 1484 dbSNP
rs1489264830 1486 dbSNP
rs187544351 1489 dbSNP
rs1267637713 1494 dbSNP
rs1480377699 1502 dbSNP
rs34629388 1507 dbSNP
rs397883715 1507 dbSNP
rs138374799 1516 dbSNP
rs1410841028 1521 dbSNP
rs1417636033 1524 dbSNP
rs762485700 1528 dbSNP
rs1369260969 1531 dbSNP
rs1459705028 1537 dbSNP
rs1301340470 1546 dbSNP
rs78290262 1552 dbSNP
rs531651163 1553 dbSNP
rs938747308 1555 dbSNP
rs1222935419 1556 dbSNP
rs927418121 1556 dbSNP
rs1323140276 1559 dbSNP
rs1049596518 1563 dbSNP
rs562473130 1567 dbSNP
rs182912702 1571 dbSNP
rs1206690865 1580 dbSNP
rs1441557548 1593 dbSNP
rs961321367 1603 dbSNP
rs573643343 1612 dbSNP
rs781551713 1613 dbSNP
rs984779825 1620 dbSNP
rs1273780831 1621 dbSNP
rs192055228 1622 dbSNP
rs770347368 1623 dbSNP
rs11551499 1626 dbSNP
rs150170499 1627 dbSNP
rs1242872011 1631 dbSNP
rs1303181779 1632 dbSNP
rs1340135455 1639 dbSNP
rs1008415461 1643 dbSNP
rs1313837034 1646 dbSNP
rs1025000644 1650 dbSNP
rs1308989999 1653 dbSNP
rs1009627757 1661 dbSNP
rs1306240984 1664 dbSNP
rs1204502043 1665 dbSNP
rs889506871 1669 dbSNP
rs564466252 1670 dbSNP
rs1307889087 1673 dbSNP
rs1028083219 1677 dbSNP
rs1406473817 1680 dbSNP
rs776866323 1683 dbSNP
rs1000494665 1684 dbSNP
rs555675315 1686 dbSNP
rs574637785 1689 dbSNP
rs1176651738 1690 dbSNP
rs1408217017 1691 dbSNP
rs1472248037 1694 dbSNP
rs1049567494 1697 dbSNP
rs1335908837 1698 dbSNP
rs1365472117 1701 dbSNP
rs141771185 1703 dbSNP
rs901037082 1705 dbSNP
rs1040799323 1707 dbSNP
rs945262659 1720 dbSNP
rs1326294050 1723 dbSNP
rs896425443 1730 dbSNP
rs1202150862 1735 dbSNP
rs1262982120 1735 dbSNP
rs908197691 1743 dbSNP
rs1250821281 1745 dbSNP
rs1056678042 1750 dbSNP
rs983814750 1760 dbSNP
rs1222203969 1762 dbSNP
rs1191860287 1768 dbSNP
rs937872457 1773 dbSNP
rs1479455197 1787 dbSNP
rs927334244 1794 dbSNP
rs931520331 1800 dbSNP
rs148523932 1807 dbSNP
rs1402258609 1810 dbSNP
rs1292070640 1816 dbSNP
rs1315736170 1824 dbSNP
rs1344238618 1827 dbSNP
rs926889166 1833 dbSNP
rs570016582 1834 dbSNP
rs868112687 1835 dbSNP
rs1347932613 1839 dbSNP
rs1222265313 1846 dbSNP
rs556480454 1846 dbSNP
rs1355756914 1849 dbSNP
rs931435693 1850 dbSNP
rs1282353470 1856 dbSNP
rs1446699885 1857 dbSNP
rs73292473 1863 dbSNP
rs1271195147 1871 dbSNP
rs567744150 1872 dbSNP
rs1025136708 1874 dbSNP
rs747218729 1884 dbSNP
rs1470999018 1887 dbSNP
rs1348954203 1888 dbSNP
rs1288192704 1889 dbSNP
rs988623314 1890 dbSNP
rs1406770156 1900 dbSNP
rs1304397020 1905 dbSNP
rs956819761 1909 dbSNP
rs1363220712 1911 dbSNP
rs1333381931 1912 dbSNP
rs1441443071 1929 dbSNP
rs1403822871 1933 dbSNP
rs148034286 1939 dbSNP
rs780143132 1940 dbSNP
rs1241610034 1946 dbSNP
rs1404204646 1950 dbSNP
rs1350192201 1952 dbSNP
rs11551498 1954 dbSNP
rs987342669 1957 dbSNP
rs1455371675 1965 dbSNP
rs1221853654 1972 dbSNP
rs115878827 1974 dbSNP
rs1028535605 1976 dbSNP
rs551622178 1977 dbSNP
rs1478953516 1982 dbSNP
rs11551497 1988 dbSNP
rs373645378 1988 dbSNP
rs367781247 1989 dbSNP
rs201838126 1990 dbSNP
rs886868099 1992 dbSNP
rs1020614000 1993 dbSNP
rs1468037385 1994 dbSNP
rs1009254136 2004 dbSNP
rs1397832966 2005 dbSNP
rs1048513682 2007 dbSNP
rs371801707 2010 dbSNP
rs926312390 2011 dbSNP
rs1327394924 2016 dbSNP
rs1056391492 2033 dbSNP
rs1002405273 2036 dbSNP
rs1357566689 2037 dbSNP
rs1283981231 2038 dbSNP
rs905020804 2048 dbSNP
rs1048914598 2051 dbSNP
rs931383239 2055 dbSNP
rs1194053517 2058 dbSNP
rs1272229202 2062 dbSNP
rs562652381 2071 dbSNP
rs920030773 2072 dbSNP
rs980985685 2074 dbSNP
rs1036966006 2076 dbSNP
rs940046956 2079 dbSNP
rs918050755 2081 dbSNP
rs1374346702 2088 dbSNP
rs912769458 2089 dbSNP
rs1460048233 2096 dbSNP
rs1220129714 2097 dbSNP
rs544393050 2101 dbSNP
rs758377924 2102 dbSNP
rs528931265 2110 dbSNP
rs1380847159 2111 dbSNP
rs746001828 2111 dbSNP
rs1296357921 2114 dbSNP
rs1328224451 2115 dbSNP
rs1225372360 2116 dbSNP
rs1365279365 2118 dbSNP
rs10691892 2126 dbSNP
rs200225811 2126 dbSNP
rs397753671 2126 dbSNP
rs1205326573 2127 dbSNP
rs1261067903 2134 dbSNP
rs954476036 2136 dbSNP
rs921420510 2144 dbSNP
rs1205307549 2146 dbSNP
rs979619184 2156 dbSNP
rs777847779 2164 dbSNP
rs1387512577 2171 dbSNP
rs1176356945 2178 dbSNP
rs1020730181 2186 dbSNP
rs1029039342 2187 dbSNP
rs996761073 2189 dbSNP
rs560172146 2190 dbSNP
rs561953815 2193 dbSNP
rs1469629229 2195 dbSNP
rs960403708 2206 dbSNP
rs539974231 2212 dbSNP
rs577334463 2213 dbSNP
rs1450070058 2222 dbSNP
rs368520961 2227 dbSNP
rs1190655415 2234 dbSNP
rs905136511 2245 dbSNP
rs1048859192 2246 dbSNP
rs994643605 2247 dbSNP
rs1490650730 2249 dbSNP
rs898553540 2249 dbSNP
rs1160306163 2255 dbSNP
rs1241703945 2255 dbSNP
rs1211097691 2265 dbSNP
rs1451948046 2267 dbSNP
rs1037082173 2270 dbSNP
rs1314254911 2270 dbSNP
rs757783183 2272 dbSNP
rs1301140810 2274 dbSNP
rs1308970602 2274 dbSNP
rs1344815842 2274 dbSNP
rs1391743369 2274 dbSNP
rs1406876401 2274 dbSNP
rs141819080 2274 dbSNP
rs57372594 2274 dbSNP
rs865799065 2274 dbSNP
rs1234200514 2276 dbSNP
rs1252081498 2276 dbSNP
rs1205775360 2278 dbSNP
rs1253625004 2280 dbSNP
rs1479822937 2282 dbSNP
rs1178421919 2283 dbSNP
rs886968467 2287 dbSNP
rs553017323 2293 dbSNP
rs1413232950 2295 dbSNP
rs1048123835 2296 dbSNP
rs912556141 2296 dbSNP
rs183184582 2298 dbSNP
rs6880007 2303 dbSNP
rs1337216549 2307 dbSNP
rs1360695931 2309 dbSNP
rs1302998589 2311 dbSNP
rs1449794271 2324 dbSNP
rs1450073737 2325 dbSNP
rs949598151 2329 dbSNP
rs918186819 2335 dbSNP
rs1053003589 2336 dbSNP
rs1333341787 2338 dbSNP
rs1198401124 2342 dbSNP
rs145407021 2346 dbSNP
rs1462810924 2350 dbSNP
rs536625326 2352 dbSNP
rs567586002 2354 dbSNP
rs767234600 2357 dbSNP
rs554221877 2358 dbSNP
rs953476816 2365 dbSNP
rs1166675579 2367 dbSNP
rs754615262 2368 dbSNP
rs913614740 2379 dbSNP
rs546679350 2380 dbSNP
rs987904229 2384 dbSNP
rs1213981847 2390 dbSNP
rs1431093187 2395 dbSNP
rs1468065609 2396 dbSNP
rs4912844 2403 dbSNP
rs114091586 2406 dbSNP
rs980867659 2407 dbSNP
rs1236058786 2413 dbSNP
rs1210675209 2415 dbSNP
rs1286677395 2418 dbSNP
rs951241181 2420 dbSNP
rs969250596 2421 dbSNP
rs1027537077 2423 dbSNP
rs994592805 2427 dbSNP
rs897662341 2430 dbSNP
rs551564697 2431 dbSNP
rs1203639492 2436 dbSNP
rs995181673 2443 dbSNP
rs531579117 2448 dbSNP
rs1312881115 2454 dbSNP
rs116613958 2455 dbSNP
rs1013218427 2458 dbSNP
rs1051079699 2465 dbSNP
rs1410161691 2472 dbSNP
rs1431356844 2479 dbSNP
rs1171841967 2481 dbSNP
rs1372181935 2481 dbSNP
rs778740418 2481 dbSNP
rs932656171 2497 dbSNP
rs900051151 2501 dbSNP
rs1429097788 2502 dbSNP
rs760376395 2509 dbSNP
rs1354010075 2511 dbSNP
rs1156280684 2512 dbSNP
rs75602275 2522 dbSNP
rs76307575 2524 dbSNP
rs11299127 2525 dbSNP
rs796115142 2525 dbSNP
rs1044003970 2526 dbSNP
rs1347954873 2527 dbSNP
rs549037344 2528 dbSNP
rs1434749219 2529 dbSNP
rs1306083949 2530 dbSNP
rs946988904 2532 dbSNP
rs1225633046 2534 dbSNP
rs528867501 2545 dbSNP
rs914061643 2546 dbSNP
rs772026991 2553 dbSNP
rs939095382 2556 dbSNP
rs927718350 2562 dbSNP
rs980430506 2571 dbSNP
rs969032168 2581 dbSNP
rs1223336651 2592 dbSNP
rs1270939330 2594 dbSNP
rs1489857741 2605 dbSNP
rs34469355 2609 dbSNP
rs201092242 2610 dbSNP
rs1233288963 2611 dbSNP
rs1052683194 2615 dbSNP
rs1471054265 2615 dbSNP
rs1379309952 2617 dbSNP
rs1424682923 2618 dbSNP
rs1254433113 2621 dbSNP
rs1203614539 2622 dbSNP
rs1480628912 2624 dbSNP
rs973287030 2630 dbSNP
rs935622638 2635 dbSNP
rs201509281 2642 dbSNP
rs1209111573 2645 dbSNP
rs1323284217 2645 dbSNP
rs1357156747 2645 dbSNP
rs1376512974 2645 dbSNP
rs1393535009 2645 dbSNP
rs143805093 2645 dbSNP
rs148990122 2645 dbSNP
rs375325277 2645 dbSNP
rs562031611 2645 dbSNP
rs68140442 2645 dbSNP
rs878942196 2645 dbSNP
rs878973619 2645 dbSNP
rs879217914 2645 dbSNP
rs1273672342 2647 dbSNP
rs1439275511 2648 dbSNP
rs1179415348 2650 dbSNP
rs1237176700 2656 dbSNP
rs1444936341 2657 dbSNP
rs925467625 2663 dbSNP
rs1326804395 2670 dbSNP
rs1382906776 2676 dbSNP
rs961964640 2681 dbSNP
rs370382245 2682 dbSNP
rs1014743235 2694 dbSNP
rs1411986667 2696 dbSNP
rs1009165613 2697 dbSNP
rs932015500 2698 dbSNP
rs1317451785 2718 dbSNP
rs1244170141 2725 dbSNP
rs891182261 2725 dbSNP
rs1270639591 2729 dbSNP
rs1341461276 2731 dbSNP
rs1196525249 2736 dbSNP
rs73796079 2739 dbSNP
rs1461472286 2740 dbSNP
rs1240888325 2741 dbSNP
rs200238872 2741 dbSNP
rs549685192 2748 dbSNP
rs944669348 2749 dbSNP
rs907903974 2750 dbSNP
rs1374136804 2758 dbSNP
rs1476695521 2764 dbSNP
rs765667817 2769 dbSNP
rs1168952245 2770 dbSNP
rs996810499 2773 dbSNP
rs1272074591 2779 dbSNP
rs538156084 2781 dbSNP
rs1352084544 2784 dbSNP
rs982709862 2789 dbSNP
rs140336081 2795 dbSNP
rs1390724025 2797 dbSNP
rs1368282027 2803 dbSNP
rs114603026 2805 dbSNP
rs563878693 2806 dbSNP
rs1225130005 2814 dbSNP
rs111787093 2816 dbSNP
rs1049078144 2821 dbSNP
rs892732210 2825 dbSNP
rs1052590522 2828 dbSNP
rs1263280260 2830 dbSNP
rs1392377918 2839 dbSNP
rs969081383 2841 dbSNP
rs576498746 2842 dbSNP
rs1458016524 2844 dbSNP
rs1414645573 2865 dbSNP
rs1465768038 2870 dbSNP
rs1159198430 2871 dbSNP
rs1387169476 2873 dbSNP
rs1398262587 2874 dbSNP
rs939523506 2875 dbSNP
rs1418886455 2884 dbSNP
rs1268620494 2885 dbSNP
rs1193432386 2890 dbSNP
rs1311225458 2904 dbSNP
rs774412056 2907 dbSNP
rs768933555 2908 dbSNP
rs980929563 2918 dbSNP
rs896150693 2919 dbSNP
rs1285916543 2920 dbSNP
rs947842976 2923 dbSNP
rs920248339 2926 dbSNP
rs77635795 2931 dbSNP
rs961912890 2932 dbSNP
rs1182754270 2940 dbSNP
rs1365765456 2949 dbSNP
rs576588130 2950 dbSNP
rs987286548 2951 dbSNP
rs775560760 2954 dbSNP
rs3797053 2955 dbSNP
rs1366593102 2956 dbSNP
rs1391762284 2957 dbSNP
rs1385018080 2958 dbSNP
rs1368856162 2966 dbSNP
rs542916261 2969 dbSNP
rs1308626954 2976 dbSNP
rs1325382172 2982 dbSNP
rs777915578 2993 dbSNP
rs769852226 2994 dbSNP
rs996924314 3006 dbSNP
rs375909403 3007 dbSNP
rs371568182 3008 dbSNP
rs368038214 3009 dbSNP
rs113186785 3010 dbSNP
rs3839201 3011 dbSNP
rs397882959 3011 dbSNP
rs1224362607 3014 dbSNP
rs964150928 3024 dbSNP
rs1391171651 3042 dbSNP
rs1438108794 3043 dbSNP
rs907834187 3044 dbSNP
rs1385885584 3046 dbSNP
rs1022285948 3055 dbSNP
rs1010928990 3062 dbSNP
rs115695299 3068 dbSNP
rs781494430 3079 dbSNP
rs554158619 3080 dbSNP
rs146590995 3083 dbSNP
rs1384313933 3084 dbSNP
rs1226123595 3085 dbSNP
rs906689514 3086 dbSNP
rs1023464161 3087 dbSNP
rs1260448170 3093 dbSNP
rs1456730961 3095 dbSNP
rs991863108 3122 dbSNP
rs1454088185 3127 dbSNP
rs1045237281 3135 dbSNP
rs145679094 3137 dbSNP
rs1484242126 3142 dbSNP
rs920364539 3143 dbSNP
rs558333132 3145 dbSNP
rs538025484 3146 dbSNP
rs1030628291 3153 dbSNP
rs999618559 3155 dbSNP
rs907744849 3158 dbSNP
rs1464936167 3159 dbSNP
rs1230968489 3162 dbSNP
rs987791395 3169 dbSNP
rs568993184 3179 dbSNP
rs566884810 3188 dbSNP
rs532868993 3190 dbSNP
rs1302735588 3205 dbSNP
rs1229182851 3206 dbSNP
rs900661565 3212 dbSNP
rs1301793364 3215 dbSNP
rs1379053078 3216 dbSNP
rs1383218028 3220 dbSNP
rs140546932 3228 dbSNP
rs190918583 3229 dbSNP
rs1218420321 3231 dbSNP
rs1263974578 3249 dbSNP
rs6874376 3250 dbSNP
rs1208076585 3252 dbSNP
rs546178807 3255 dbSNP
rs1022399192 3258 dbSNP
rs1260942556 3262 dbSNP
rs1176966201 3263 dbSNP
rs1477341133 3263 dbSNP
rs532810547 3264 dbSNP
rs752616895 3266 dbSNP
rs956920631 3266 dbSNP
rs539519230 3268 dbSNP
rs920619683 3275 dbSNP
rs1394960262 3283 dbSNP
rs1031037824 3289 dbSNP
rs867564483 3290 dbSNP
rs1369979562 3293 dbSNP
rs1450715573 3294 dbSNP
rs1004192738 3301 dbSNP
rs1317525807 3304 dbSNP
rs1038248200 3306 dbSNP
rs1370854543 3307 dbSNP
rs948007317 3312 dbSNP
rs145695366 3314 dbSNP
rs1199850831 3315 dbSNP
rs1045187891 3316 dbSNP
rs113427374 3320 dbSNP
rs1248190878 3320 dbSNP
rs1424096358 3329 dbSNP
rs1190201913 3332 dbSNP
rs530644704 3339 dbSNP
rs1037414974 3343 dbSNP
rs1156372938 3344 dbSNP
rs1359155873 3348 dbSNP
rs149853026 3356 dbSNP
rs1324812190 3357 dbSNP
rs1275184765 3364 dbSNP
rs1207227944 3367 dbSNP
rs923700796 3369 dbSNP
rs1344393644 3390 dbSNP
rs1434768421 3391 dbSNP
rs1274426862 3393 dbSNP
rs1242403240 3401 dbSNP
rs1307234665 3407 dbSNP
rs1353103442 3408 dbSNP
rs1268561821 3410 dbSNP
rs72801999 3411 dbSNP
rs574208325 3419 dbSNP
rs1291938075 3420 dbSNP
rs1449594988 3424 dbSNP
rs113022449 3425 dbSNP
rs559272751 3425 dbSNP
rs72801997 3425 dbSNP
rs933213517 3426 dbSNP
rs1444754401 3432 dbSNP
rs921862720 3446 dbSNP
rs1393535178 3447 dbSNP
rs1019097740 3449 dbSNP
rs562041169 3453 dbSNP
rs1413285276 3454 dbSNP
rs1375223080 3481 dbSNP
rs886637358 3484 dbSNP
rs1309104082 3485 dbSNP
rs758054181 3487 dbSNP
rs1048257600 3505 dbSNP
rs1245622181 3506 dbSNP
rs1285864095 3510 dbSNP
rs1354240029 3513 dbSNP
rs1227496611 3514 dbSNP
rs115482436 3516 dbSNP
rs1458945237 3519 dbSNP
rs914449850 3524 dbSNP
rs989558764 3526 dbSNP
rs1237193899 3527 dbSNP
rs1166850131 3532 dbSNP
rs938906624 3535 dbSNP
rs867008628 3539 dbSNP
rs1044384121 3540 dbSNP
rs1370699231 3544 dbSNP
rs1031402270 3548 dbSNP
rs1472120211 3551 dbSNP
rs1163211830 3556 dbSNP
rs982153792 3562 dbSNP
rs1424736995 3568 dbSNP
rs971359815 3570 dbSNP
rs1168721264 3571 dbSNP
rs578092612 3574 dbSNP
rs1396671474 3576 dbSNP
rs1023851623 3581 dbSNP
rs1369788607 3584 dbSNP
rs1185352331 3586 dbSNP
rs1474724948 3588 dbSNP
rs1319656653 3593 dbSNP
rs145608916 3606 dbSNP
rs140063794 3617 dbSNP
rs186151894 3619 dbSNP
rs1303904551 3634 dbSNP
rs575715757 3636 dbSNP
rs1016420407 3641 dbSNP
rs923824113 3647 dbSNP
rs555225352 3650 dbSNP
rs1441364711 3667 dbSNP
rs978235873 3676 dbSNP
rs1264548248 3679 dbSNP
rs763670364 3682 dbSNP
rs1357185719 3690 dbSNP
rs1423140924 3695 dbSNP
rs1466786875 3696 dbSNP
rs967796052 3700 dbSNP
rs1413986308 3707 dbSNP
rs914869918 3707 dbSNP
rs1298676341 3708 dbSNP
rs1342354588 3710 dbSNP
rs974422842 3710 dbSNP
rs1231696398 3715 dbSNP
rs1355207028 3721 dbSNP
rs764751801 3724 dbSNP
rs1289439242 3725 dbSNP
rs1051841547 3733 dbSNP
rs1253886842 3742 dbSNP
rs1343597616 3745 dbSNP
rs1216777210 3748 dbSNP
rs1443304385 3764 dbSNP
rs933012957 3766 dbSNP
rs1287359344 3768 dbSNP
rs535679966 3770 dbSNP
rs1038968186 3771 dbSNP
rs566425228 3779 dbSNP
rs754270565 3780 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 81848.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000344120.4 | 3UTR | CAAAAAUUAAAACAACAACAACAACAACAACAACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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