pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol RNASEH1   
Synonyms H1RNA, PEOB2, RNH1
Description ribonuclease H1
Transcript NM_002936   
Expression
Putative miRNA Targets on RNASEH1
3'UTR of RNASEH1
(miRNA target sites are highlighted)
>RNASEH1|NM_002936|3'UTR
   1 GCCATGTGACTTTAGTCCTTGGGAGAACTTGAGCCAGCGGCTGTCTTGCTGCCTGTACTTACTGGTGTGGAAAATAGCCT
  81 GCAGGTAGGACCATTGCAGTGATGGGCAGATGCGTCTTTCACACGGAATCAGGCACAGTGGCCTTCTGTGACATGTGTTT
 161 ATAAAAAATGGTTAAGTATATAATAAATTGAACATCTTTGAGATTGGAGAATTATGTGAGATTTCCACATTATGTTTACT
 241 GGGTTCAATACTGTCCTTGCTTGTTTTATTGCAGGCAAGCAAGGCAAATGGCCTAAAATGCTGTGGCTTATATTTTGATA
 321 AGAAATCAAAAAACCATTGGTTAAAAGATGCAACTCAGAAGTCTGGAAGTATTCTGAAAGCATCCATTTACCGTCCAGTT
 401 GACAGGTTTGAGTCTCCTGCTTGTATAGGTGACTTGTGCCCATGGGTACATTAAAGGAACATGCTGCCCAGGGCCTGGGC
 481 GGACAGCTCAGTGGGCAGGATGTGTGCTGGGTCTCAGCCCCATGTGCCTGCTTGCTGGGCAGTTAGTATAGGGCAAAGCC
 561 TGCCTGCGGCGACCCTGGCTGCTAGGCCATTCTCTAGGAACAGCTGCGACTCATAAAGACCAAGAAGCATAAATAAACTT
 641 TCAAAAATTTATTTGGCTCTTTCGTTAAAAACTGTGCAAATTAAAAAAAAAAAAAAAAAAGTAAGACACCGGCTGGGCAC
 721 AGTGGCTCACTTCTGTAATCCTAGCACTTTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCT
 801 TGGCCAACATGACGAAACCCTGTCTCTACTAAAATTACAAAAATTATCCAGGTGTGGTGGCACGGGCTTGTAGTCCCAGC
 881 TACTTGGGAGGCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auUUCAUUGAAGG--------UGAACCGa 5'
            ||  |||||:|        |:||||| 
Target 5' taAATAAACTTTCAAAAATTTATTTGGCt 3'
630 - 658 137.00 -12.90
2
miRNA  3' auuUCAUUGAA----GG-UGAACCGa 5'
             || |::||    || :|||||| 
Target 5' gtcAGGAGTTTGAGACCAGCTTGGCc 3'
780 - 805 136.00 -13.20
3
miRNA  3' auuUCAUUGAAGGUGAACCga 5'
             |||  |  |:||||||  
Target 5' tgtAGTCCCAGCTACTTGGga 3'
869 - 889 134.00 -12.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30502024 2 COSMIC
COSN30108439 6 COSMIC
COSN26992353 19 COSMIC
COSN31597726 41 COSMIC
COSN20045660 70 COSMIC
COSN30126201 124 COSMIC
COSN28187831 189 COSMIC
COSN29019101 325 COSMIC
COSN23763414 834 COSMIC
COSN1837865 1449 COSMIC
COSN29169378 1488 COSMIC
COSN27022121 1592 COSMIC
COSN9999461 1718 COSMIC
COSN25155858 1880 COSMIC
COSN19559802 2139 COSMIC
COSN7127295 2780 COSMIC
COSN21015969 2997 COSMIC
COSN29493829 3317 COSMIC
COSN26898980 3344 COSMIC
COSN22188060 3956 COSMIC
COSN16305759 4266 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1283086955 3 dbSNP
rs376879287 4 dbSNP
rs745597927 10 dbSNP
rs763849215 13 dbSNP
rs760224011 17 dbSNP
rs1254219332 19 dbSNP
rs1339832257 20 dbSNP
rs374599161 22 dbSNP
rs989371337 23 dbSNP
rs1485362440 25 dbSNP
rs377658499 29 dbSNP
rs1373160585 30 dbSNP
rs770153053 31 dbSNP
rs547354710 32 dbSNP
rs938302457 36 dbSNP
rs1418753150 37 dbSNP
rs538770633 38 dbSNP
rs1221377745 40 dbSNP
rs928237062 42 dbSNP
rs1476298781 43 dbSNP
rs1293658634 53 dbSNP
rs1188449344 55 dbSNP
rs1216612971 75 dbSNP
rs191526558 86 dbSNP
rs1162691117 91 dbSNP
rs1274346255 104 dbSNP
rs550359891 105 dbSNP
rs1462118729 107 dbSNP
rs1328232015 113 dbSNP
rs546488156 114 dbSNP
rs1434186358 120 dbSNP
rs1270686714 122 dbSNP
rs913861211 123 dbSNP
rs1226537952 124 dbSNP
rs1030948749 125 dbSNP
rs998244229 126 dbSNP
rs965061590 131 dbSNP
rs1326937240 132 dbSNP
rs1321811914 133 dbSNP
rs1018010681 144 dbSNP
rs936719125 148 dbSNP
rs1006653387 153 dbSNP
rs770502455 155 dbSNP
rs985953176 160 dbSNP
rs888578149 161 dbSNP
rs1049037419 164 dbSNP
rs994381606 168 dbSNP
rs1353192981 170 dbSNP
rs756589078 174 dbSNP
rs531802969 187 dbSNP
rs539676782 189 dbSNP
rs972364275 193 dbSNP
rs1167369469 194 dbSNP
rs1386805992 196 dbSNP
rs766944055 205 dbSNP
rs1191246597 209 dbSNP
rs868848682 215 dbSNP
rs1318651478 218 dbSNP
rs1346774983 223 dbSNP
rs961756935 228 dbSNP
rs927309573 236 dbSNP
rs1044423611 237 dbSNP
rs561671253 239 dbSNP
rs751233182 242 dbSNP
rs1234664993 246 dbSNP
rs763798743 252 dbSNP
rs549388399 259 dbSNP
rs1197975776 260 dbSNP
rs989709927 268 dbSNP
rs1286056871 269 dbSNP
rs777250117 272 dbSNP
rs1327970537 276 dbSNP
rs577127290 290 dbSNP
rs894223736 291 dbSNP
rs1033851228 302 dbSNP
rs1208601219 311 dbSNP
rs1237481587 312 dbSNP
rs1252910060 319 dbSNP
rs1206815661 322 dbSNP
rs1308304508 326 dbSNP
rs1002332928 327 dbSNP
rs976711584 327 dbSNP
rs965010580 336 dbSNP
rs146150366 337 dbSNP
rs1409855089 338 dbSNP
rs1373348285 341 dbSNP
rs1333424162 351 dbSNP
rs187080154 364 dbSNP
rs1416555669 372 dbSNP
rs1446772351 382 dbSNP
rs952433388 385 dbSNP
rs1349363600 391 dbSNP
rs144544973 391 dbSNP
rs1300270293 392 dbSNP
rs779240185 393 dbSNP
rs1217896157 412 dbSNP
rs897338375 420 dbSNP
rs1280085534 423 dbSNP
rs1036323142 425 dbSNP
rs1437362434 442 dbSNP
rs759576863 445 dbSNP
rs936773170 448 dbSNP
rs1171420528 453 dbSNP
rs182119829 457 dbSNP
rs986174337 459 dbSNP
rs1044370703 461 dbSNP
rs1395226991 463 dbSNP
rs933174938 467 dbSNP
rs923075097 481 dbSNP
rs1391533737 484 dbSNP
rs1330463687 487 dbSNP
rs139346577 494 dbSNP
rs867189506 495 dbSNP
rs1303084651 501 dbSNP
rs1349071279 502 dbSNP
rs1237109937 504 dbSNP
rs893194260 510 dbSNP
rs55981318 513 dbSNP
rs1338818386 516 dbSNP
rs1252318350 518 dbSNP
rs962257240 521 dbSNP
rs1015965444 522 dbSNP
rs984420985 536 dbSNP
rs958329038 539 dbSNP
rs1279851989 542 dbSNP
rs150883559 549 dbSNP
rs1186592972 551 dbSNP
rs1389542951 553 dbSNP
rs1350130991 555 dbSNP
rs191152007 559 dbSNP
rs1169077619 560 dbSNP
rs935132929 562 dbSNP
rs542575249 565 dbSNP
rs1404345628 566 dbSNP
rs976626985 567 dbSNP
rs1372136583 568 dbSNP
rs1443652219 571 dbSNP
rs943933317 572 dbSNP
rs1309547452 576 dbSNP
rs71449680 582 dbSNP
rs911176557 583 dbSNP
rs1228796147 589 dbSNP
rs143769964 594 dbSNP
rs1354358795 595 dbSNP
rs571982055 596 dbSNP
rs748241649 604 dbSNP
rs1274118622 605 dbSNP
rs766692220 607 dbSNP
rs553753297 608 dbSNP
rs1260786520 619 dbSNP
rs1009848358 621 dbSNP
rs892702731 638 dbSNP
rs1053826101 641 dbSNP
rs985112832 642 dbSNP
rs952380231 645 dbSNP
rs1027126456 647 dbSNP
rs141663136 650 dbSNP
rs1396293767 651 dbSNP
rs1416303333 656 dbSNP
rs1318872185 658 dbSNP
rs571448659 659 dbSNP
rs1383217928 660 dbSNP
rs375216178 662 dbSNP
rs374571622 663 dbSNP
rs1293999414 664 dbSNP
rs1337143344 664 dbSNP
rs1226832638 668 dbSNP
rs1259883633 672 dbSNP
rs567742946 673 dbSNP
rs6737419 674 dbSNP
rs1187973856 677 dbSNP
rs1485049786 677 dbSNP
rs1159803520 678 dbSNP
rs1040997633 681 dbSNP
rs1255212871 682 dbSNP
rs35045074 683 dbSNP
rs398042309 683 dbSNP
rs70937041 683 dbSNP
rs71397001 683 dbSNP
rs1454694509 686 dbSNP
rs528009821 690 dbSNP
rs1291131965 698 dbSNP
rs567121345 699 dbSNP
rs1036597336 700 dbSNP
rs1357474738 701 dbSNP
rs1408211375 701 dbSNP
rs1414717769 701 dbSNP
rs1491232936 701 dbSNP
rs770327384 701 dbSNP
rs940659320 701 dbSNP
rs1176263374 702 dbSNP
rs907880413 702 dbSNP
rs909138601 702 dbSNP
rs984640197 702 dbSNP
rs1250867592 704 dbSNP
rs983856969 705 dbSNP
rs958379548 706 dbSNP
rs1186010109 707 dbSNP
rs372974740 710 dbSNP
rs1258268485 711 dbSNP
rs868168141 712 dbSNP
rs1204657161 718 dbSNP
rs981178786 719 dbSNP
rs1377327295 722 dbSNP
rs952197084 723 dbSNP
rs1011511264 733 dbSNP
rs893150903 735 dbSNP
rs1484964883 746 dbSNP
rs1374249522 748 dbSNP
rs971539762 749 dbSNP
rs1262988116 760 dbSNP
rs1370005451 761 dbSNP
rs1025172530 763 dbSNP
rs570288655 764 dbSNP
rs1053580478 773 dbSNP
rs1339430772 774 dbSNP
rs1240473581 784 dbSNP
rs1251387269 788 dbSNP
rs1481389531 791 dbSNP
rs1010147685 798 dbSNP
rs796335009 803 dbSNP
rs1454143069 809 dbSNP
rs901964073 813 dbSNP
rs1001087612 814 dbSNP
rs1040892228 818 dbSNP
rs1463675840 830 dbSNP
rs547423121 838 dbSNP
rs1050404655 840 dbSNP
rs1441441952 844 dbSNP
rs1234670194 845 dbSNP
rs1305376771 848 dbSNP
rs1355728128 863 dbSNP
rs943882491 864 dbSNP
rs1295618400 865 dbSNP
rs1268223863 869 dbSNP
rs867180158 870 dbSNP
rs532134679 873 dbSNP
rs911124178 874 dbSNP
rs1380004933 878 dbSNP
rs1272233303 879 dbSNP
rs985391998 882 dbSNP
rs565021803 883 dbSNP
rs930944232 886 dbSNP
rs1468304789 887 dbSNP
rs550080045 891 dbSNP
rs919610597 896 dbSNP
rs1289369668 900 dbSNP
rs749699878 905 dbSNP
rs1457358906 906 dbSNP
rs961148860 909 dbSNP
rs1186466534 914 dbSNP
rs928406054 921 dbSNP
rs1430419620 922 dbSNP
rs1036411828 923 dbSNP
rs6745981 925 dbSNP
rs970220161 939 dbSNP
rs1462169257 941 dbSNP
rs909023084 944 dbSNP
rs1048987216 946 dbSNP
rs1418825028 948 dbSNP
rs1023146271 954 dbSNP
rs1192800974 957 dbSNP
rs937240219 959 dbSNP
rs1230982309 960 dbSNP
rs1292145058 964 dbSNP
rs1445351227 970 dbSNP
rs531404972 976 dbSNP
rs1206176348 982 dbSNP
rs1234779192 984 dbSNP
rs761948917 988 dbSNP
rs1468428689 989 dbSNP
rs1271613451 992 dbSNP
rs1215966304 993 dbSNP
rs1445684506 996 dbSNP
rs1335981022 1000 dbSNP
rs1243266195 1002 dbSNP
rs1269193714 1004 dbSNP
rs112737049 1007 dbSNP
rs1399967626 1007 dbSNP
rs1417288829 1007 dbSNP
rs1475631384 1007 dbSNP
rs981505005 1007 dbSNP
rs1159733833 1010 dbSNP
rs971210441 1010 dbSNP
rs188730510 1012 dbSNP
rs1327619235 1013 dbSNP
rs1355562631 1023 dbSNP
rs1416217847 1025 dbSNP
rs1031669859 1026 dbSNP
rs147339298 1028 dbSNP
rs1223637079 1029 dbSNP
rs1285400888 1030 dbSNP
rs1356420493 1038 dbSNP
rs1209385334 1044 dbSNP
rs901914721 1045 dbSNP
rs79268864 1046 dbSNP
rs1327905249 1047 dbSNP
rs1461745621 1050 dbSNP
rs1231456384 1056 dbSNP
rs1331613616 1063 dbSNP
rs1177498208 1064 dbSNP
rs1008040228 1065 dbSNP
rs1432729710 1073 dbSNP
rs1172985699 1077 dbSNP
rs953603489 1084 dbSNP
rs1029038052 1095 dbSNP
rs889635643 1108 dbSNP
rs1395593149 1115 dbSNP
rs1334737446 1117 dbSNP
rs184229722 1129 dbSNP
rs901811609 1131 dbSNP
rs1379638088 1135 dbSNP
rs1232700035 1138 dbSNP
rs1036869132 1141 dbSNP
rs1348664951 1143 dbSNP
rs931248466 1149 dbSNP
rs1004948022 1154 dbSNP
rs1270983723 1155 dbSNP
rs1437425688 1160 dbSNP
rs919874653 1161 dbSNP
rs1182831652 1166 dbSNP
rs1474555192 1167 dbSNP
rs545048806 1170 dbSNP
rs1452387929 1172 dbSNP
rs1036689949 1175 dbSNP
rs1395678344 1188 dbSNP
rs545877586 1190 dbSNP
rs1221350554 1192 dbSNP
rs577591150 1194 dbSNP
rs1395171049 1195 dbSNP
rs370978637 1196 dbSNP
rs1196097862 1197 dbSNP
rs1048866349 1198 dbSNP
rs937290975 1202 dbSNP
rs905784010 1205 dbSNP
rs71449679 1206 dbSNP
rs1272815217 1207 dbSNP
rs981172182 1218 dbSNP
rs949759567 1221 dbSNP
rs1338881176 1222 dbSNP
rs970167762 1222 dbSNP
rs567720068 1225 dbSNP
rs1341077377 1226 dbSNP
rs935723902 1227 dbSNP
rs990765768 1232 dbSNP
rs537084439 1238 dbSNP
rs1371965264 1241 dbSNP
rs1232902695 1246 dbSNP
rs1475493189 1253 dbSNP
rs1169269425 1255 dbSNP
rs925477682 1256 dbSNP
rs1460594838 1257 dbSNP
rs979593254 1257 dbSNP
rs1395705039 1268 dbSNP
rs751050855 1270 dbSNP
rs1368201118 1272 dbSNP
rs1325927737 1280 dbSNP
rs80187707 1282 dbSNP
rs555682235 1283 dbSNP
rs998850343 1291 dbSNP
rs534347351 1292 dbSNP
rs1358250174 1304 dbSNP
rs1203306628 1308 dbSNP
rs1005403945 1313 dbSNP
rs1447525294 1313 dbSNP
rs1019010799 1315 dbSNP
rs1408385967 1317 dbSNP
rs1007654758 1318 dbSNP
rs1254823295 1325 dbSNP
rs889584800 1326 dbSNP
rs867720713 1327 dbSNP
rs1049586686 1329 dbSNP
rs567210320 1331 dbSNP
rs1169515823 1336 dbSNP
rs898397684 1341 dbSNP
rs1157326815 1342 dbSNP
rs1434149135 1350 dbSNP
rs191972158 1352 dbSNP
rs1037378111 1353 dbSNP
rs762719197 1355 dbSNP
rs928313364 1356 dbSNP
rs1323269696 1358 dbSNP
rs1001324132 1360 dbSNP
rs1259929574 1365 dbSNP
rs1045421070 1373 dbSNP
rs1351255464 1374 dbSNP
rs554444678 1376 dbSNP
rs1485083896 1377 dbSNP
rs1188217819 1380 dbSNP
rs1257912085 1381 dbSNP
rs915696481 1390 dbSNP
rs1180138650 1391 dbSNP
rs990321465 1393 dbSNP
rs1180025381 1396 dbSNP
rs1363616954 1410 dbSNP
rs1439970549 1427 dbSNP
rs1250758302 1428 dbSNP
rs750199796 1428 dbSNP
rs1161016162 1437 dbSNP
rs1209796027 1443 dbSNP
rs1046072664 1444 dbSNP
rs936192301 1450 dbSNP
rs1434244444 1453 dbSNP
rs1313571052 1463 dbSNP
rs1381528588 1467 dbSNP
rs541883239 1471 dbSNP
rs78637363 1473 dbSNP
rs924865283 1475 dbSNP
rs1336184322 1477 dbSNP
rs1242192379 1481 dbSNP
rs373042886 1486 dbSNP
rs765127000 1487 dbSNP
rs949974096 1488 dbSNP
rs1257249554 1504 dbSNP
rs1277504445 1505 dbSNP
rs1301374439 1517 dbSNP
rs978088911 1523 dbSNP
rs369277078 1526 dbSNP
rs58648964 1533 dbSNP
rs1308857062 1542 dbSNP
rs76050731 1552 dbSNP
rs935775746 1552 dbSNP
rs1414456087 1553 dbSNP
rs1176825303 1555 dbSNP
rs1360987465 1568 dbSNP
rs1460641103 1573 dbSNP
rs1297864883 1575 dbSNP
rs1400757625 1585 dbSNP
rs1373648623 1587 dbSNP
rs1175637914 1588 dbSNP
rs925695895 1589 dbSNP
rs1370075990 1593 dbSNP
rs985176323 1603 dbSNP
rs953433326 1619 dbSNP
rs1027768182 1624 dbSNP
rs1305297073 1626 dbSNP
rs932154299 1635 dbSNP
rs1251587192 1643 dbSNP
rs922100922 1649 dbSNP
rs1200835835 1651 dbSNP
rs186809955 1655 dbSNP
rs1157384194 1658 dbSNP
rs898339790 1659 dbSNP
rs1413240743 1660 dbSNP
rs1015479077 1665 dbSNP
rs1484486379 1670 dbSNP
rs1427323010 1693 dbSNP
rs1426887831 1695 dbSNP
rs1258952081 1707 dbSNP
rs1015371679 1713 dbSNP
rs1004540591 1715 dbSNP
rs1445962957 1717 dbSNP
rs1323599173 1718 dbSNP
rs1393486554 1719 dbSNP
rs907170380 1721 dbSNP
rs983411617 1728 dbSNP
rs548806833 1734 dbSNP
rs766332230 1738 dbSNP
rs527482159 1744 dbSNP
rs1319506758 1746 dbSNP
rs562705387 1747 dbSNP
rs116148935 1751 dbSNP
rs1292462596 1752 dbSNP
rs1222950674 1754 dbSNP
rs774464455 1760 dbSNP
rs754289286 1768 dbSNP
rs1232859542 1775 dbSNP
rs772748119 1776 dbSNP
rs768670850 1780 dbSNP
rs771602176 1782 dbSNP
rs747553883 1789 dbSNP
rs1478897273 1791 dbSNP
rs1014622574 1792 dbSNP
rs1448812381 1802 dbSNP
rs779481290 1809 dbSNP
rs891710087 1810 dbSNP
rs1054632940 1814 dbSNP
rs1344757922 1826 dbSNP
rs1166668540 1832 dbSNP
rs1343291950 1835 dbSNP
rs1053406563 1837 dbSNP
rs749518216 1838 dbSNP
rs1341883102 1840 dbSNP
rs999871000 1845 dbSNP
rs936155910 1854 dbSNP
rs544886540 1855 dbSNP
rs1049526181 1856 dbSNP
rs977661418 1859 dbSNP
rs1229192968 1869 dbSNP
rs1292477319 1873 dbSNP
rs1315615701 1889 dbSNP
rs944937045 1890 dbSNP
rs1286798986 1902 dbSNP
rs1489349648 1903 dbSNP
rs912181784 1906 dbSNP
rs1257004447 1908 dbSNP
rs1164694309 1910 dbSNP
rs986115255 1911 dbSNP
rs1183336939 1920 dbSNP
rs1419541417 1924 dbSNP
rs1405545656 1939 dbSNP
rs1400014808 1958 dbSNP
rs1159217754 1959 dbSNP
rs953381093 1960 dbSNP
rs1182124201 1961 dbSNP
rs1474791561 1968 dbSNP
rs1040537405 1970 dbSNP
rs1311763147 1973 dbSNP
rs1359313704 1975 dbSNP
rs1027714426 1979 dbSNP
rs973905640 1980 dbSNP
rs577834477 1985 dbSNP
rs1447516867 1987 dbSNP
rs1272260543 1989 dbSNP
rs1310703445 1992 dbSNP
rs546141230 2009 dbSNP
rs1208732825 2010 dbSNP
rs1278043778 2015 dbSNP
rs562761897 2016 dbSNP
rs544545925 2023 dbSNP
rs952060291 2024 dbSNP
rs111791797 2027 dbSNP
rs138688981 2035 dbSNP
rs970161343 2037 dbSNP
rs1024599485 2038 dbSNP
rs1014091464 2040 dbSNP
rs1415801926 2044 dbSNP
rs956033147 2046 dbSNP
rs1353105279 2060 dbSNP
rs907116252 2061 dbSNP
rs555885849 2072 dbSNP
rs1295345535 2078 dbSNP
rs904214751 2079 dbSNP
rs1274307925 2083 dbSNP
rs1049412614 2087 dbSNP
rs997032120 2089 dbSNP
rs1012514297 2090 dbSNP
rs1433449727 2091 dbSNP
rs1390044296 2097 dbSNP
rs78943846 2098 dbSNP
rs1041150528 2099 dbSNP
rs944898721 2103 dbSNP
rs569847920 2109 dbSNP
rs1460169862 2110 dbSNP
rs1377669648 2111 dbSNP
rs908006627 2115 dbSNP
rs558351623 2118 dbSNP
rs879901532 2120 dbSNP
rs935751870 2127 dbSNP
rs902970814 2130 dbSNP
rs540160847 2132 dbSNP
rs554017962 2134 dbSNP
rs781590703 2135 dbSNP
rs1323555039 2137 dbSNP
rs1331738028 2139 dbSNP
rs1449595372 2143 dbSNP
rs920624539 2155 dbSNP
rs912127762 2159 dbSNP
rs917348246 2166 dbSNP
rs993293038 2166 dbSNP
rs1267901224 2169 dbSNP
rs535687096 2169 dbSNP
rs955919705 2170 dbSNP
rs115854886 2172 dbSNP
rs968616808 2174 dbSNP
rs1172419492 2184 dbSNP
rs1469642559 2185 dbSNP
rs757761385 2190 dbSNP
rs1163060061 2191 dbSNP
rs1392001496 2195 dbSNP
rs1407609829 2199 dbSNP
rs1316257568 2203 dbSNP
rs540426313 2204 dbSNP
rs146116277 2205 dbSNP
rs1270904468 2223 dbSNP
rs1280410248 2231 dbSNP
rs962431948 2237 dbSNP
rs1243710678 2242 dbSNP
rs74464267 2243 dbSNP
rs982561197 2245 dbSNP
rs971223229 2246 dbSNP
rs1203368679 2250 dbSNP
rs114167016 2252 dbSNP
rs1012795271 2263 dbSNP
rs1373569750 2269 dbSNP
rs1195377972 2278 dbSNP
rs1294494103 2285 dbSNP
rs886631701 2286 dbSNP
rs757913525 2290 dbSNP
rs1440974781 2302 dbSNP
rs958358986 2303 dbSNP
rs1369437618 2308 dbSNP
rs1474048984 2315 dbSNP
rs1157426026 2316 dbSNP
rs527516855 2320 dbSNP
rs752411088 2322 dbSNP
rs573246487 2325 dbSNP
rs1373822652 2327 dbSNP
rs1395693521 2327 dbSNP
rs780263193 2327 dbSNP
rs999898025 2334 dbSNP
rs115168476 2335 dbSNP
rs1308516564 2339 dbSNP
rs1354339499 2340 dbSNP
rs1173981206 2355 dbSNP
rs181650367 2364 dbSNP
rs1277617611 2366 dbSNP
rs1482698945 2367 dbSNP
rs1041508909 2373 dbSNP
rs1009043240 2379 dbSNP
rs890639328 2380 dbSNP
rs1257265505 2381 dbSNP
rs1444561227 2393 dbSNP
rs554579450 2396 dbSNP
rs1267744721 2402 dbSNP
rs533080553 2407 dbSNP
rs1160478692 2408 dbSNP
rs992951534 2411 dbSNP
rs369292218 2412 dbSNP
rs1465703816 2413 dbSNP
rs920891835 2417 dbSNP
rs1404063224 2420 dbSNP
rs764969706 2422 dbSNP
rs924475394 2423 dbSNP
rs1342943520 2433 dbSNP
rs1279722304 2434 dbSNP
rs1242256867 2435 dbSNP
rs1300604018 2440 dbSNP
rs978586668 2445 dbSNP
rs1233515707 2446 dbSNP
rs1232654714 2450 dbSNP
rs1257453250 2454 dbSNP
rs62106011 2455 dbSNP
rs190132802 2457 dbSNP
rs1197095444 2462 dbSNP
rs544318667 2471 dbSNP
rs1458588903 2479 dbSNP
rs537459256 2481 dbSNP
rs1181097535 2486 dbSNP
rs1028250804 2493 dbSNP
rs573973839 2499 dbSNP
rs1391150212 2505 dbSNP
rs562189563 2515 dbSNP
rs965090508 2519 dbSNP
rs982175445 2523 dbSNP
rs568895245 2524 dbSNP
rs1374257799 2531 dbSNP
rs917081669 2533 dbSNP
rs574477808 2540 dbSNP
rs558371949 2544 dbSNP
rs1386790749 2550 dbSNP
rs1436457655 2550 dbSNP
rs1378107278 2553 dbSNP
rs958863103 2559 dbSNP
rs1032958904 2566 dbSNP
rs149542713 2567 dbSNP
rs558388815 2571 dbSNP
rs1417073703 2572 dbSNP
rs1319115876 2574 dbSNP
rs1201053084 2576 dbSNP
rs967086346 2578 dbSNP
rs1488441340 2591 dbSNP
rs1191799847 2592 dbSNP
rs1409961122 2596 dbSNP
rs138017511 2597 dbSNP
rs1193271266 2604 dbSNP
rs1483506518 2606 dbSNP
rs1467043262 2608 dbSNP
rs1256846340 2609 dbSNP
rs1349165419 2621 dbSNP
rs144564649 2622 dbSNP
rs751772323 2622 dbSNP
rs1008658562 2633 dbSNP
rs1337825845 2636 dbSNP
rs895846005 2642 dbSNP
rs1278504811 2645 dbSNP
rs1057440339 2655 dbSNP
rs1216622340 2659 dbSNP
rs934773991 2666 dbSNP
rs1321594997 2680 dbSNP
rs924690853 2682 dbSNP
rs74676084 2684 dbSNP
rs1178330477 2692 dbSNP
rs1257094783 2710 dbSNP
rs1487390172 2727 dbSNP
rs947214721 2733 dbSNP
rs1264100305 2735 dbSNP
rs75840905 2735 dbSNP
rs975378803 2736 dbSNP
rs1179864154 2738 dbSNP
rs1315445349 2741 dbSNP
rs1424292249 2759 dbSNP
rs757422610 2767 dbSNP
rs1358060294 2768 dbSNP
rs996390254 2778 dbSNP
rs1418494673 2779 dbSNP
rs1298276716 2801 dbSNP
rs965659457 2807 dbSNP
rs1228584280 2823 dbSNP
rs1445385231 2825 dbSNP
rs1354456652 2828 dbSNP
rs1291105284 2841 dbSNP
rs1416053518 2842 dbSNP
rs899397466 2848 dbSNP
rs546416991 2854 dbSNP
rs1286869450 2855 dbSNP
rs1489366742 2858 dbSNP
rs150352695 2862 dbSNP
rs940659482 2870 dbSNP
rs951017555 2877 dbSNP
rs113096837 2881 dbSNP
rs533662803 2882 dbSNP
rs963538684 2887 dbSNP
rs1020652464 2900 dbSNP
rs536393023 2904 dbSNP
rs185812765 2906 dbSNP
rs1412372352 2909 dbSNP
rs916697380 2909 dbSNP
rs1333179462 2915 dbSNP
rs1425618956 2915 dbSNP
rs991268520 2916 dbSNP
rs1449137440 2925 dbSNP
rs1339110838 2929 dbSNP
rs1375277280 2940 dbSNP
rs937213436 2945 dbSNP
rs1204994056 2946 dbSNP
rs551168016 2948 dbSNP
rs751523676 2959 dbSNP
rs896055795 2968 dbSNP
rs1217675397 2970 dbSNP
rs1278110081 2973 dbSNP
rs1312997494 2976 dbSNP
rs978712186 2977 dbSNP
rs533138409 2981 dbSNP
rs1270363858 2982 dbSNP
rs998862219 2983 dbSNP
rs377108482 2990 dbSNP
rs180805533 2996 dbSNP
rs987170686 2998 dbSNP
rs954432819 3002 dbSNP
rs796307365 3004 dbSNP
rs947433458 3007 dbSNP
rs1246604811 3013 dbSNP
rs1340485126 3017 dbSNP
rs1332694280 3019 dbSNP
rs996724971 3027 dbSNP
rs1434312415 3028 dbSNP
rs1274368340 3033 dbSNP
rs765283675 3043 dbSNP
rs899344833 3044 dbSNP
rs1225633274 3045 dbSNP
rs1380416166 3053 dbSNP
rs567238359 3055 dbSNP
rs1317144791 3059 dbSNP
rs1039934860 3061 dbSNP
rs944008031 3072 dbSNP
rs114402718 3081 dbSNP
rs1460725999 3088 dbSNP
rs1392096643 3105 dbSNP
rs1246809813 3107 dbSNP
rs886730070 3114 dbSNP
rs919575628 3116 dbSNP
rs367714166 3119 dbSNP
rs151273507 3120 dbSNP
rs1404119395 3121 dbSNP
rs1013506304 3128 dbSNP
rs1023175274 3128 dbSNP
rs1322946777 3128 dbSNP
rs895216629 3138 dbSNP
rs562089119 3139 dbSNP
rs1055231544 3146 dbSNP
rs937139647 3151 dbSNP
rs1340138716 3157 dbSNP
rs1036364009 3166 dbSNP
rs925814617 3176 dbSNP
rs540588855 3177 dbSNP
rs867377929 3178 dbSNP
rs1289938013 3186 dbSNP
rs140065844 3191 dbSNP
rs568898928 3191 dbSNP
rs999083230 3196 dbSNP
rs903206634 3202 dbSNP
rs145077925 3203 dbSNP
rs1194283225 3207 dbSNP
rs913183311 3208 dbSNP
rs1472077050 3210 dbSNP
rs1163258151 3227 dbSNP
rs1391530569 3242 dbSNP
rs539756926 3249 dbSNP
rs1468305923 3263 dbSNP
rs1296424765 3269 dbSNP
rs1360093314 3282 dbSNP
rs954378796 3299 dbSNP
rs1320022706 3300 dbSNP
rs1028720572 3302 dbSNP
rs775759956 3310 dbSNP
rs1243958220 3312 dbSNP
rs963843201 3316 dbSNP
rs189624317 3317 dbSNP
rs1011700925 3323 dbSNP
rs769972825 3329 dbSNP
rs1224584556 3339 dbSNP
rs1488400144 3342 dbSNP
rs546128178 3346 dbSNP
rs746268053 3359 dbSNP
rs1441107273 3361 dbSNP
rs1187303051 3367 dbSNP
rs912374904 3371 dbSNP
rs1368435594 3378 dbSNP
rs1447010611 3393 dbSNP
rs1156881961 3395 dbSNP
rs1325317132 3397 dbSNP
rs1454476427 3400 dbSNP
rs1046991722 3403 dbSNP
rs867206090 3407 dbSNP
rs141202584 3417 dbSNP
rs1391690407 3418 dbSNP
rs1013513989 3419 dbSNP
rs1334600544 3420 dbSNP
rs1384842521 3421 dbSNP
rs895164256 3423 dbSNP
rs1307857149 3426 dbSNP
rs1055584487 3428 dbSNP
rs10165018 3430 dbSNP
rs947709425 3432 dbSNP
rs1343861683 3444 dbSNP
rs1200197655 3449 dbSNP
rs1244159794 3453 dbSNP
rs1392169526 3463 dbSNP
rs1463033352 3464 dbSNP
rs1169723525 3468 dbSNP
rs903973563 3473 dbSNP
rs1177361931 3476 dbSNP
rs547629000 3481 dbSNP
rs778365827 3484 dbSNP
rs1376089120 3485 dbSNP
rs913129502 3489 dbSNP
rs1201494327 3490 dbSNP
rs1176858089 3494 dbSNP
rs542524867 3498 dbSNP
rs1051696979 3505 dbSNP
rs1463995108 3505 dbSNP
rs1330656908 3509 dbSNP
rs1377574485 3515 dbSNP
rs758040208 3529 dbSNP
rs932941242 3530 dbSNP
rs921618994 3537 dbSNP
rs185548134 3539 dbSNP
rs974855610 3540 dbSNP
rs963150252 3542 dbSNP
rs1193774779 3546 dbSNP
rs960500937 3557 dbSNP
rs1257901306 3560 dbSNP
rs146554996 3560 dbSNP
rs1343604674 3563 dbSNP
rs977697114 3568 dbSNP
rs10153531 3572 dbSNP
rs1021674280 3573 dbSNP
rs1200499326 3579 dbSNP
rs950901960 3583 dbSNP
rs1011586297 3587 dbSNP
rs1025153157 3599 dbSNP
rs1169704643 3601 dbSNP
rs1354999209 3602 dbSNP
rs1463484104 3605 dbSNP
rs1013798657 3616 dbSNP
rs959326028 3628 dbSNP
rs1389444475 3632 dbSNP
rs1033682059 3637 dbSNP
rs899803665 3642 dbSNP
rs568493602 3644 dbSNP
rs1217138306 3646 dbSNP
rs1277984747 3654 dbSNP
rs1328424235 3655 dbSNP
rs1207290213 3660 dbSNP
rs1263754839 3660 dbSNP
rs903919897 3664 dbSNP
rs1042885283 3666 dbSNP
rs1010045048 3670 dbSNP
rs1223336528 3672 dbSNP
rs1372415066 3673 dbSNP
rs1308749508 3675 dbSNP
rs1018794001 3677 dbSNP
rs533504394 3685 dbSNP
rs182215534 3686 dbSNP
rs190433762 3689 dbSNP
rs1478553171 3691 dbSNP
rs1162681928 3695 dbSNP
rs929936312 3707 dbSNP
rs898424020 3712 dbSNP
rs754651500 3716 dbSNP
rs947722846 3727 dbSNP
rs916222677 3729 dbSNP
rs1363177060 3730 dbSNP
rs1216815357 3735 dbSNP
rs1359358392 3735 dbSNP
rs992339881 3735 dbSNP
rs1246754724 3739 dbSNP
rs1251844346 3745 dbSNP
rs539281289 3753 dbSNP
rs1484425509 3756 dbSNP
rs1487418797 3762 dbSNP
rs144474893 3765 dbSNP
rs921879560 3768 dbSNP
rs1201028359 3769 dbSNP
rs977582524 3771 dbSNP
rs1445186633 3772 dbSNP
rs1349614168 3774 dbSNP
rs113324451 3789 dbSNP
rs376674506 3789 dbSNP
rs1377988416 3795 dbSNP
rs1418710678 3801 dbSNP
rs372198699 3812 dbSNP
rs1433244677 3813 dbSNP
rs1038682429 3825 dbSNP
rs941712514 3835 dbSNP
rs990393587 3836 dbSNP
rs1454029232 3838 dbSNP
rs908935984 3839 dbSNP
rs1317214057 3849 dbSNP
rs1414213180 3851 dbSNP
rs148589615 3852 dbSNP
rs766226054 3853 dbSNP
rs529193943 3863 dbSNP
rs562872136 3865 dbSNP
rs1207695265 3869 dbSNP
rs1236729281 3869 dbSNP
rs918087041 3872 dbSNP
rs568323123 3874 dbSNP
rs1185410322 3878 dbSNP
rs547061017 3883 dbSNP
rs1157428117 3885 dbSNP
rs1018263742 3886 dbSNP
rs1008764566 3890 dbSNP
rs1174371733 3891 dbSNP
rs1473803039 3894 dbSNP
rs184229314 3895 dbSNP
rs546178325 3900 dbSNP
rs1339343704 3902 dbSNP
rs1034371415 3904 dbSNP
rs1375348027 3905 dbSNP
rs891210316 3906 dbSNP
rs1471513482 3910 dbSNP
rs62106010 3911 dbSNP
rs1210651544 3912 dbSNP
rs1262269860 3914 dbSNP
rs1446392733 3927 dbSNP
rs968466210 3931 dbSNP
rs1281824030 3940 dbSNP
rs1021006140 3943 dbSNP
rs1205346890 3944 dbSNP
rs993972588 3946 dbSNP
rs1009659974 3948 dbSNP
rs1210337761 3957 dbSNP
rs750436610 3968 dbSNP
rs898303142 3973 dbSNP
rs767441478 3976 dbSNP
rs1269004394 3977 dbSNP
rs1232913915 3986 dbSNP
rs376958543 3987 dbSNP
rs1429017056 3988 dbSNP
rs997378031 3992 dbSNP
rs560460406 3995 dbSNP
rs540468125 4011 dbSNP
rs763065509 4012 dbSNP
rs546264889 4016 dbSNP
rs1449332265 4017 dbSNP
rs1409942667 4019 dbSNP
rs1326332589 4022 dbSNP
rs78423190 4031 dbSNP
rs1434559960 4034 dbSNP
rs887447984 4042 dbSNP
rs554440940 4049 dbSNP
rs1367250224 4052 dbSNP
rs563926804 4053 dbSNP
rs929054202 4054 dbSNP
rs542008147 4063 dbSNP
rs1221114022 4064 dbSNP
rs1403253075 4064 dbSNP
rs992269315 4067 dbSNP
rs946216137 4070 dbSNP
rs938198030 4071 dbSNP
rs1415286329 4075 dbSNP
rs1475370499 4080 dbSNP
rs926867185 4082 dbSNP
rs1422288213 4085 dbSNP
rs980100319 4091 dbSNP
rs765867846 4094 dbSNP
rs1366373745 4095 dbSNP
rs986823719 4102 dbSNP
rs968039968 4104 dbSNP
rs1228049475 4105 dbSNP
rs532690772 4106 dbSNP
rs1025699891 4111 dbSNP
rs1244554954 4113 dbSNP
rs988176340 4114 dbSNP
rs1291904709 4115 dbSNP
rs1361108613 4127 dbSNP
rs1465171898 4134 dbSNP
rs1252153634 4139 dbSNP
rs994186471 4141 dbSNP
rs962540854 4147 dbSNP
rs1016708601 4152 dbSNP
rs773723378 4157 dbSNP
rs1320164867 4158 dbSNP
rs955430366 4166 dbSNP
rs1029774222 4175 dbSNP
rs1228929170 4177 dbSNP
rs192197207 4181 dbSNP
rs115000030 4182 dbSNP
rs1384547428 4185 dbSNP
rs1017485270 4193 dbSNP
rs1382512154 4193 dbSNP
rs1006554275 4195 dbSNP
rs887739199 4197 dbSNP
rs1366298914 4209 dbSNP
rs1315127662 4210 dbSNP
rs866050266 4211 dbSNP
rs929001900 4215 dbSNP
rs1259711907 4216 dbSNP
rs1350981740 4217 dbSNP
rs759834761 4221 dbSNP
rs1056155198 4234 dbSNP
rs938159265 4241 dbSNP
rs149825465 4242 dbSNP
rs979665610 4255 dbSNP
rs139928248 4259 dbSNP
rs1054629376 4262 dbSNP
rs942825620 4265 dbSNP
rs540853321 4273 dbSNP
rs1363402019 4276 dbSNP
rs1170337394 4282 dbSNP
rs1450037223 4283 dbSNP
rs987433097 4289 dbSNP
rs1394196935 4291 dbSNP
rs771339494 4299 dbSNP
rs760933993 4300 dbSNP
rs1248665552 4309 dbSNP
rs1335960240 4315 dbSNP
rs955374623 4319 dbSNP
rs1281635060 4320 dbSNP
rs1222655140 4324 dbSNP
rs918566394 4326 dbSNP
rs922649790 4329 dbSNP
rs972819134 4333 dbSNP
rs766429765 4339 dbSNP
rs975907782 4340 dbSNP
rs1272583085 4341 dbSNP
rs188474067 4344 dbSNP
rs1017217512 4347 dbSNP
rs1343530208 4353 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 246243.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 246243.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000534797.1 | 3UTR | CUUAUUUCUGCCAGUAUAUUUUGGACACUUUAUAAUCAUUAAAGCACUUUCUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000534797.1 | 3UTR | UAUAUUUUGGACACUUUAUAAUCAUUAAAGCACUUUCUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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