pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol RAB33B   
Synonyms SMC2
Description RAB33B, member RAS oncogene family
Transcript NM_031296   
Expression
Putative miRNA Targets on RAB33B
3'UTR of RAB33B
(miRNA target sites are highlighted)
>RAB33B|NM_031296|3'UTR
   1 ATAACAGTCTTTATTATATTATCTAATTTTGACTAAAGAAATACTTTTGAAGTATGACAGTATTAAGTCATAAGATTTAA
  81 TCTCAACTATAATGGGTCATCTTGACACTTTGCTGTTTGTCATTGTCACGCTTTTGTATTTTGTATCTACTTAAGTTTGT
 161 CACTGTGACAACACAGGAAAAGTTGGTTTTCAGGTGAGATTGAAAATGAAGCAAAGATAGGATGAATCTGAACATCTCTC
 241 CATCTAGAGCCCAATGAAGGAAGCTTCAAATGAGAACATGATGGAATCAGTAACCATTCAATCTTTTGTCCTAGGATTGG
 321 AAAAAAATGTTAAAGGTTTAGGACACACCTAATAGTATGTCCTTTGAATGGGAAGTGTTCTTAATAGGATAAAAACTGGT
 401 ATTTGCCTCTCCCCAGAGTACTTTTTTTGTTTTTTCATAGAGACGGGGTCTTGCTATGTTGTCCAGGCTGGCCTTGAGCT
 481 CCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCCCAGTACTGGGACTGTAGGTACTCACCACTGCATCTGGCCTTTCTT
 561 TGTTTTATTAACATATTTAGTTTTGTTATTATTGGTATGTTTTAGAGCCAAGACTTTAGTTCCAGTGGGATAAGAAGGCA
 641 TAGAATGTTTTCTGGTTCCCAGTCCATAAAGAATGACTTTTCCAAGAGTTCTAGATGTTTGATTTTCTAATTAATACTTA
 721 TCAGATCTACAAAAATCATTATTATTTTAAAAGAGTTATTTGAGTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGAG
 801 ATGGAGTCTCGCTCTGTCTCCAGGCTGGAGTGCAGTGGCGTCATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAG
 881 TGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGCACTACCACACCCAGCTGATTTTTGTATTTTTAG
 961 TATAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATCCACCCGCCTCAGCTTCCCAAAG
1041 TGCTGGGATTACAGGTGTGAGTCACTGCACCCAGCCGAGTTGCTTTCTTACTAAATCCTATTAAAATATGCAAAAATAAG
1121 TCAGATTTTAAGGCAAATAAAGTGACATAAGGTGCTTTATATTTTATTTTGGTATATTTAAACAGTGAAAAACTAACTGA
1201 AAGCACATGAAGAGTTGTAACTTGGGGGAAAATAGGTAAACATAGCTTCTAGCTAACACAGGAGACCTATTCTTAGCCTT
1281 TACTAATTTCAAGCAGTGTATCCCATATGGTATCTCTTGCTCTTCCTTCAACTCCAATAAATTTAATGACTAAATGCCAA
1361 GTTAACAAATCAACTTCCATTTGGATTGTAGGTGTGAAGGCACAACTCTAATTGCTATTAGTCTACATGTATTTCTGTAA
1441 TAGTATTGTGTCATATCAATTTTTAAGATGTCTAAATTTTATGGTCACAAGTTATCCCTCCTCAGTATGAAAAATAAATT
1521 AGATATTGAAAAATGTCTAAACTTCAGTGATGGAAAGAATATTTCAAGAAGTTTTTTAACCTAAATACTTTTATTTTGAA
1601 TTTAAGTCTTTGCACATAAAATATAGCAAGCTTACATATTAAACTATTTACGTAAATGGAATGTAAGCCATGACTTTAAC
1681 TGAAGTGTTCACATTCACTAATTTTGATAGATTGCTGTCCTTAATAATTTTGGAGGAAATTAAGCCAAATGATTATTGTA
1761 CTACAGTATTTTCAGAATATGGGAAATCAATTAAAAATGTAATCTAATCTAGTTTAAGATTTTTGTTTAATCATCATGGT
1841 GGTCCTACCTGGATAATTTAACTATAAAGACAAAGTAATTCTATTAAATGAACTAACTGAAAATAATAATTATAGGAAGT
1921 GATTATTCCATTTTAAGTATTAGAGCTCAAATTGGCTTTATTTGCATTTAGGGAGATCATGTTTTCTTAATCATGCTGGA
2001 ATTTAAAAATTGTTTTACTTGTATCGAAATTAACCTTGATTTATAACTATTTTTGTAATAAAACAATGACAGCTGTAGTA
2081 ACTATGATGGGTGTAACAACATTTTTTTAAAGAAGGGAATCTGTTTATCGCTTTTCAAAATATTTTCTAAAGTGGGGGAA
2161 GAAAGTTTATAGACTTTCCAAGCACATTTATGGTTTTTTATTACTATTATTATGGTTTTAAAAAGAGTAACTTTATTTCT
2241 TTTTGTAAGGAATTAAGTAATATCCTTTACAGTTCTGTGAAAGGACTTATTTTTTAACTGTAATATTTATTAGTTTTAAA
2321 ATATTTGTATCTCATTTGTAACAATTTGTTTTAATTTTTTATATATATGTTTTTATTTTTAAAAAACATACCAGTTGAAT
2401 GGGGTTAAAGCTTTCAATATCTTAAAATATTTATAAAACATTTCACTGTTGCAAAATCACTTCCAAAATGATAGCTATCT
2481 AACAACTAATTACTAATTTTTAAAGAACAAATCACACATTTAAAAAATCTGTAGAATTTATTTTAACTATGACCTTTAAT
2561 TGAAAATAAATAATTAAAATATCAGACATGTTTTGGAAAAGTCTTAATTTGAGAACACCAAAGGAAACTACCCCAGAATC
2641 TAATGTAGTTCGCTATTAATAACAATGCATTATTGAAAGTATATTGCAAATACATGTTTCCTCATGAAATCTAAGTAATT
2721 TTGTTGTGGAATAGTGTCACTGTTACATTTCCCCCATGAAGTTCAATAAACCAGCTTAGCCACAAAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCAC-GUU---UUCAUUAACACCAAAAa 5'
            ||| |||   |:| ||   ||||||| 
Target 5' ctGTGACAACACAGGAAAAGTTGGTTTTc 3'
163 - 191 159.00 -11.90
2
miRNA  3' accACGUUUUCAUUAACACCAAAAa 5'
             | |||:   | || ||||||| 
Target 5' cttTCCAAGCACATTTATGGTTTTt 3'
2174 - 2198 158.00 -7.00
3
miRNA  3' accACGUUUUCAU--UAACACCAAAAA--- 5'
             | :|  | ||  ||| |||||||    
Target 5' tttTTTATTACTATTATTATGGTTTTAAAA 3'
2194 - 2223 144.00 -5.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
902857 2 ClinVar
347569 119 ClinVar
902858 147 ClinVar
902859 162 ClinVar
347570 220 ClinVar
347571 255 ClinVar
900305 426 ClinVar
347572 495 ClinVar
900306 514 ClinVar
347573 544 ClinVar
900307 577 ClinVar
347574 591 ClinVar
347575 596 ClinVar
347576 633 ClinVar
347577 702 ClinVar
347578 765 ClinVar
347579 777 ClinVar
347580 777 ClinVar
901409 781 ClinVar
901410 925 ClinVar
347581 1078 ClinVar
901411 1158 ClinVar
902031 1236 ClinVar
347582 1304 ClinVar
347583 1311 ClinVar
902032 1323 ClinVar
347584 1404 ClinVar
902033 1456 ClinVar
347585 1752 ClinVar
347586 1820 ClinVar
902918 1926 ClinVar
902919 1950 ClinVar
347587 1977 ClinVar
347588 1995 ClinVar
347589 2027 ClinVar
902920 2131 ClinVar
347590 2133 ClinVar
902921 2272 ClinVar
347591 2328 ClinVar
900363 2356 ClinVar
900364 2360 ClinVar
900365 2392 ClinVar
900366 2523 ClinVar
900367 2549 ClinVar
347592 2600 ClinVar
347593 2652 ClinVar
901472 2723 ClinVar
901473 2755 ClinVar
COSN26991291 2 COSMIC
COSN30534411 22 COSMIC
COSN32064771 90 COSMIC
COSN31493014 96 COSMIC
COSN31545181 126 COSMIC
COSN7739584 175 COSMIC
COSN20704837 188 COSMIC
COSN26844602 312 COSMIC
COSN28989122 384 COSMIC
COSN27663979 563 COSMIC
COSN20091113 769 COSMIC
COSN9215828 1009 COSMIC
COSN15846071 1089 COSMIC
COSN26125148 1161 COSMIC
COSN31607009 1479 COSMIC
COSN5865331 1632 COSMIC
COSN9215829 1870 COSMIC
COSN9215830 2039 COSMIC
COSN6802991 2235 COSMIC
COSN1994929 2714 COSMIC
COSN24048752 2969 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs374235912 5 dbSNP
rs1183858810 6 dbSNP
rs1414951431 10 dbSNP
rs1418887462 15 dbSNP
rs1431570705 16 dbSNP
rs747719770 17 dbSNP
rs925430271 18 dbSNP
rs755737840 20 dbSNP
rs553701349 22 dbSNP
rs749017726 32 dbSNP
rs771409925 34 dbSNP
rs1052529675 35 dbSNP
rs1449981000 36 dbSNP
rs1285614909 38 dbSNP
rs774793031 50 dbSNP
rs368776354 54 dbSNP
rs1429679449 58 dbSNP
rs1178346944 64 dbSNP
rs1431276220 73 dbSNP
rs1186811557 83 dbSNP
rs1486553729 87 dbSNP
rs1239867331 97 dbSNP
rs933430176 98 dbSNP
rs941046560 99 dbSNP
rs1464859807 100 dbSNP
rs974709587 107 dbSNP
rs1218450524 109 dbSNP
rs921556328 112 dbSNP
rs1300836266 114 dbSNP
rs1215398762 116 dbSNP
rs1364080847 117 dbSNP
rs886059077 119 dbSNP
rs1050350310 130 dbSNP
rs371018294 131 dbSNP
rs145356283 140 dbSNP
rs889125681 144 dbSNP
rs1006747025 147 dbSNP
rs1038272623 151 dbSNP
rs898324029 154 dbSNP
rs1338664947 158 dbSNP
rs1464351689 159 dbSNP
rs994439463 160 dbSNP
rs760410514 162 dbSNP
rs1369659815 163 dbSNP
rs1418621990 164 dbSNP
rs1468119383 165 dbSNP
rs934697180 169 dbSNP
rs1157505479 175 dbSNP
rs1409279504 199 dbSNP
rs1244292241 201 dbSNP
rs1206190835 214 dbSNP
rs886059078 220 dbSNP
rs1255769886 231 dbSNP
rs960696724 235 dbSNP
rs1309504338 236 dbSNP
rs893119253 237 dbSNP
rs1013355220 243 dbSNP
rs1317058900 251 dbSNP
rs1023277266 252 dbSNP
rs1394232244 254 dbSNP
rs78192594 255 dbSNP
rs1298556915 266 dbSNP
rs753676031 270 dbSNP
rs1167650990 273 dbSNP
rs1415605348 277 dbSNP
rs1386576264 279 dbSNP
rs1022621772 280 dbSNP
rs1190146234 281 dbSNP
rs1336448096 297 dbSNP
rs905143633 309 dbSNP
rs1002444901 313 dbSNP
rs1034822123 321 dbSNP
rs960538427 321 dbSNP
rs759186303 330 dbSNP
rs1204780845 332 dbSNP
rs1441510398 333 dbSNP
rs1280226048 336 dbSNP
rs1354251026 343 dbSNP
rs979663372 347 dbSNP
rs1242316855 349 dbSNP
rs982469650 350 dbSNP
rs1032635789 355 dbSNP
rs1307664812 356 dbSNP
rs1277892879 360 dbSNP
rs962338878 362 dbSNP
rs1346928102 370 dbSNP
rs1200853050 371 dbSNP
rs973796880 373 dbSNP
rs868550998 375 dbSNP
rs1160978209 388 dbSNP
rs956887995 391 dbSNP
rs1457017685 395 dbSNP
rs932878773 408 dbSNP
rs1160559505 409 dbSNP
rs772853565 414 dbSNP
rs1473770136 418 dbSNP
rs1181647490 422 dbSNP
rs558276110 422 dbSNP
rs368965362 426 dbSNP
rs1269796686 428 dbSNP
rs923469175 445 dbSNP
rs933380410 446 dbSNP
rs543610291 449 dbSNP
rs934834431 450 dbSNP
rs139776321 454 dbSNP
rs1192360549 459 dbSNP
rs910531934 462 dbSNP
rs942073886 471 dbSNP
rs886059079 495 dbSNP
rs149806801 496 dbSNP
rs547327813 502 dbSNP
rs1321226392 508 dbSNP
rs4131797 514 dbSNP
rs947367222 518 dbSNP
rs1047307527 519 dbSNP
rs1044442889 523 dbSNP
rs1459289239 538 dbSNP
rs375926957 544 dbSNP
rs79952078 544 dbSNP
rs547754736 548 dbSNP
rs1002095265 550 dbSNP
rs1480990518 553 dbSNP
rs1329622265 559 dbSNP
rs1379268026 567 dbSNP
rs1034914890 568 dbSNP
rs896301589 574 dbSNP
rs4131798 577 dbSNP
rs1463510729 581 dbSNP
rs78607198 591 dbSNP
rs13137997 596 dbSNP
rs1346945807 618 dbSNP
rs1233628015 619 dbSNP
rs1257544352 623 dbSNP
rs1326435547 626 dbSNP
rs886059080 633 dbSNP
rs1337037154 638 dbSNP
rs1320549679 639 dbSNP
rs1470498933 642 dbSNP
rs1032012239 644 dbSNP
rs1194929848 654 dbSNP
rs1404814473 654 dbSNP
rs757931104 656 dbSNP
rs1477838659 657 dbSNP
rs1458743295 661 dbSNP
rs953856121 662 dbSNP
rs778101528 664 dbSNP
rs1030900895 675 dbSNP
rs1447780697 690 dbSNP
rs987046052 697 dbSNP
rs187434569 702 dbSNP
rs954932274 708 dbSNP
rs1252867216 715 dbSNP
rs1434271240 716 dbSNP
rs367570568 718 dbSNP
rs1199487809 722 dbSNP
rs910677712 725 dbSNP
rs1225538740 727 dbSNP
rs1475203073 729 dbSNP
rs1297434360 730 dbSNP
rs1168750457 733 dbSNP
rs1402766229 738 dbSNP
rs1332630199 739 dbSNP
rs1414312320 752 dbSNP
rs1170795979 765 dbSNP
rs886059081 765 dbSNP
rs1459893371 767 dbSNP
rs1325314368 768 dbSNP
rs1389647995 768 dbSNP
rs1265753744 769 dbSNP
rs956180176 771 dbSNP
rs1393554465 772 dbSNP
rs1276317788 773 dbSNP
rs1387348365 773 dbSNP
rs141506245 773 dbSNP
rs1303118602 774 dbSNP
rs572377043 774 dbSNP
rs370232877 776 dbSNP
rs10604111 777 dbSNP
rs1162649492 777 dbSNP
rs1198330410 777 dbSNP
rs1291907449 777 dbSNP
rs1351553776 777 dbSNP
rs1369985031 777 dbSNP
rs1408238502 777 dbSNP
rs1411526708 777 dbSNP
rs1447761968 777 dbSNP
rs1470355814 777 dbSNP
rs77490600 777 dbSNP
rs914658861 777 dbSNP
rs947456660 777 dbSNP
rs1226202317 780 dbSNP
rs1253709182 780 dbSNP
rs1482534983 781 dbSNP
rs535223457 781 dbSNP
rs973343593 782 dbSNP
rs1319587173 783 dbSNP
rs1211216983 784 dbSNP
rs553739771 784 dbSNP
rs1288338334 796 dbSNP
rs1271996720 797 dbSNP
rs1330167634 798 dbSNP
rs1340296805 799 dbSNP
rs1239993575 800 dbSNP
rs1260045396 801 dbSNP
rs1446741521 802 dbSNP
rs1226747301 806 dbSNP
rs575168097 811 dbSNP
rs1425976725 812 dbSNP
rs1348217727 815 dbSNP
rs535876356 828 dbSNP
rs1457728570 830 dbSNP
rs1164296921 831 dbSNP
rs557029460 839 dbSNP
rs1472163215 840 dbSNP
rs929859759 841 dbSNP
rs575694962 848 dbSNP
rs1382738648 849 dbSNP
rs1245633454 850 dbSNP
rs1056294957 852 dbSNP
rs1381394486 861 dbSNP
rs1221423870 862 dbSNP
rs1298599574 865 dbSNP
rs76106895 866 dbSNP
rs1231148512 875 dbSNP
rs1207184594 894 dbSNP
rs752137128 895 dbSNP
rs896295441 903 dbSNP
rs949233015 904 dbSNP
rs1246383103 905 dbSNP
rs757889216 906 dbSNP
rs1365526457 911 dbSNP
rs1259434307 913 dbSNP
rs1044833370 925 dbSNP
rs1390700869 928 dbSNP
rs904902410 938 dbSNP
rs1456500065 943 dbSNP
rs1359542725 952 dbSNP
rs1177706954 960 dbSNP
rs1000623831 961 dbSNP
rs1423799248 971 dbSNP
rs898328625 972 dbSNP
rs1450837599 976 dbSNP
rs1250431897 981 dbSNP
rs1187242435 994 dbSNP
rs1032392929 999 dbSNP
rs892146172 1000 dbSNP
rs1265877021 1019 dbSNP
rs1034582431 1021 dbSNP
rs542065465 1024 dbSNP
rs953719302 1025 dbSNP
rs1030618282 1031 dbSNP
rs1187562154 1032 dbSNP
rs1256915804 1033 dbSNP
rs34847429 1034 dbSNP
rs1434291047 1037 dbSNP
rs1379577312 1045 dbSNP
rs1304397534 1053 dbSNP
rs1464401475 1054 dbSNP
rs1008337270 1056 dbSNP
rs115582784 1078 dbSNP
rs1007643674 1084 dbSNP
rs1387787298 1093 dbSNP
rs1167215026 1096 dbSNP
rs576660877 1099 dbSNP
rs540805521 1101 dbSNP
rs1183927876 1105 dbSNP
rs1237109210 1109 dbSNP
rs963402713 1109 dbSNP
rs914711306 1112 dbSNP
rs559244851 1117 dbSNP
rs1206160629 1123 dbSNP
rs1361936515 1125 dbSNP
rs185491975 1148 dbSNP
rs1272616791 1153 dbSNP
rs1227514679 1157 dbSNP
rs141155369 1158 dbSNP
rs1322233281 1161 dbSNP
rs973477443 1162 dbSNP
rs980189154 1167 dbSNP
rs919233617 1175 dbSNP
rs1308189829 1184 dbSNP
rs1368106455 1184 dbSNP
rs1411309958 1184 dbSNP
rs950776262 1186 dbSNP
rs752421185 1194 dbSNP
rs938685467 1199 dbSNP
rs1057096970 1205 dbSNP
rs1159024506 1207 dbSNP
rs983096259 1208 dbSNP
rs1422378617 1224 dbSNP
rs907882124 1224 dbSNP
rs1417603635 1225 dbSNP
rs917879241 1228 dbSNP
rs191855183 1229 dbSNP
rs898304368 1233 dbSNP
rs1044885200 1243 dbSNP
rs1488887651 1246 dbSNP
rs371670337 1261 dbSNP
rs180999779 1265 dbSNP
rs769850123 1273 dbSNP
rs1242520918 1284 dbSNP
rs1379468433 1287 dbSNP
rs1049478006 1291 dbSNP
rs1053572405 1297 dbSNP
rs563092251 1298 dbSNP
rs185149995 1303 dbSNP
rs4074940 1304 dbSNP
rs1288773923 1306 dbSNP
rs1009276202 1308 dbSNP
rs886059082 1311 dbSNP
rs890674598 1316 dbSNP
rs1348202223 1319 dbSNP
rs1007896122 1323 dbSNP
rs1007779295 1324 dbSNP
rs1392281202 1328 dbSNP
rs955700236 1332 dbSNP
rs570513693 1337 dbSNP
rs1295736098 1348 dbSNP
rs1456872035 1370 dbSNP
rs535262921 1372 dbSNP
rs1160338030 1374 dbSNP
rs1010464569 1376 dbSNP
rs1473799702 1378 dbSNP
rs1410029625 1384 dbSNP
rs990530085 1388 dbSNP
rs1346217239 1390 dbSNP
rs749284742 1392 dbSNP
rs1269596357 1393 dbSNP
rs1207937862 1399 dbSNP
rs1467958470 1401 dbSNP
rs75661332 1404 dbSNP
rs1326881213 1407 dbSNP
rs1287254448 1409 dbSNP
rs1233529735 1416 dbSNP
rs774461284 1418 dbSNP
rs1298592685 1442 dbSNP
rs995317883 1454 dbSNP
rs1026432291 1460 dbSNP
rs1385783643 1472 dbSNP
rs1484368600 1477 dbSNP
rs1394350928 1482 dbSNP
rs1321885283 1483 dbSNP
rs1175490086 1488 dbSNP
rs950772691 1489 dbSNP
rs1386926245 1492 dbSNP
rs1158169695 1495 dbSNP
rs1379637644 1497 dbSNP
rs992802831 1497 dbSNP
rs980708850 1500 dbSNP
rs917260025 1501 dbSNP
rs746915488 1521 dbSNP
rs111256902 1522 dbSNP
rs970602230 1523 dbSNP
rs1438995327 1526 dbSNP
rs568776686 1534 dbSNP
rs770923966 1545 dbSNP
rs776399831 1547 dbSNP
rs980699602 1550 dbSNP
rs759391772 1551 dbSNP
rs1200632644 1555 dbSNP
rs1179237518 1567 dbSNP
rs1381906739 1572 dbSNP
rs1346663396 1581 dbSNP
rs1253922949 1582 dbSNP
rs1232924549 1593 dbSNP
rs1034434096 1597 dbSNP
rs536106890 1604 dbSNP
rs1298914802 1607 dbSNP
rs960358575 1609 dbSNP
rs1175104595 1613 dbSNP
rs764733229 1614 dbSNP
rs1363405643 1615 dbSNP
rs1318047808 1617 dbSNP
rs1397015247 1621 dbSNP
rs1404608708 1628 dbSNP
rs557627842 1637 dbSNP
rs1359307791 1647 dbSNP
rs1467318284 1650 dbSNP
rs569195989 1652 dbSNP
rs926422735 1653 dbSNP
rs1447611500 1654 dbSNP
rs1375581681 1670 dbSNP
rs1187966922 1671 dbSNP
rs1443994295 1674 dbSNP
rs1253628618 1675 dbSNP
rs1209728064 1692 dbSNP
rs992878978 1694 dbSNP
rs907851175 1708 dbSNP
rs940712432 1711 dbSNP
rs545679176 1716 dbSNP
rs1369460285 1721 dbSNP
rs972605103 1730 dbSNP
rs557996835 1734 dbSNP
rs919866334 1735 dbSNP
rs114169513 1752 dbSNP
rs945128885 1765 dbSNP
rs1202769700 1767 dbSNP
rs1050064463 1778 dbSNP
rs1163830080 1778 dbSNP
rs564915149 1791 dbSNP
rs751156431 1812 dbSNP
rs1366502690 1814 dbSNP
rs1186717552 1819 dbSNP
rs557693738 1820 dbSNP
rs890140108 1830 dbSNP
rs1458307442 1831 dbSNP
rs552710104 1834 dbSNP
rs757823739 1843 dbSNP
rs574395574 1853 dbSNP
rs1229396834 1865 dbSNP
rs1358859005 1869 dbSNP
rs1291850123 1872 dbSNP
rs1233113362 1875 dbSNP
rs1452501782 1877 dbSNP
rs891446863 1879 dbSNP
rs1190403611 1893 dbSNP
rs1425678446 1913 dbSNP
rs750749103 1914 dbSNP
rs1434520617 1918 dbSNP
rs1324053334 1931 dbSNP
rs899332462 1942 dbSNP
rs1388550325 1947 dbSNP
rs1163902963 1950 dbSNP
rs995055244 1951 dbSNP
rs777787099 1961 dbSNP
rs1009932150 1974 dbSNP
rs886059083 1977 dbSNP
rs1413694388 1982 dbSNP
rs1179580885 1990 dbSNP
rs1021866927 1994 dbSNP
rs886059084 1995 dbSNP
rs1399132359 2009 dbSNP
rs1026900757 2015 dbSNP
rs1453813984 2019 dbSNP
rs77727514 2026 dbSNP
rs144602972 2027 dbSNP
rs1332809443 2030 dbSNP
rs1001794405 2044 dbSNP
rs1034895908 2046 dbSNP
rs960209297 2047 dbSNP
rs1372651793 2050 dbSNP
rs1014766614 2067 dbSNP
rs1024286238 2069 dbSNP
rs1368690492 2075 dbSNP
rs1370227895 2075 dbSNP
rs1213001291 2076 dbSNP
rs1277745304 2084 dbSNP
rs1457518057 2085 dbSNP
rs1318886624 2091 dbSNP
rs1220488360 2092 dbSNP
rs1156438772 2094 dbSNP
rs1399774785 2095 dbSNP
rs970068543 2096 dbSNP
rs1192402129 2098 dbSNP
rs530459089 2108 dbSNP
rs189565723 2109 dbSNP
rs532095782 2120 dbSNP
rs1033637503 2122 dbSNP
rs1465577010 2130 dbSNP
rs138541013 2131 dbSNP
rs575262316 2133 dbSNP
rs1316523019 2144 dbSNP
rs1184593239 2153 dbSNP
rs1279686723 2154 dbSNP
rs919857317 2156 dbSNP
rs913738495 2162 dbSNP
rs200901402 2171 dbSNP
rs1422385584 2174 dbSNP
rs1477950514 2177 dbSNP
rs1172173084 2180 dbSNP
rs931262312 2191 dbSNP
rs1415107251 2205 dbSNP
rs1367029535 2215 dbSNP
rs1286875003 2221 dbSNP
rs541756988 2224 dbSNP
rs749501900 2227 dbSNP
rs1177868879 2231 dbSNP
rs985385874 2236 dbSNP
rs1393962069 2240 dbSNP
rs747111216 2246 dbSNP
rs945123303 2251 dbSNP
rs1450665109 2265 dbSNP
rs1185136823 2266 dbSNP
rs911074120 2270 dbSNP
rs943833354 2271 dbSNP
rs1212513088 2283 dbSNP
rs1279409974 2284 dbSNP
rs1229289156 2290 dbSNP
rs1279729961 2290 dbSNP
rs987650734 2299 dbSNP
rs911545622 2318 dbSNP
rs755193519 2328 dbSNP
rs1379644890 2330 dbSNP
rs528163192 2332 dbSNP
rs796958099 2343 dbSNP
rs1304153940 2345 dbSNP
rs1412574587 2345 dbSNP
rs1039257744 2349 dbSNP
rs899384756 2351 dbSNP
rs1341349613 2355 dbSNP
rs778963098 2356 dbSNP
rs904183314 2358 dbSNP
rs1002224031 2360 dbSNP
rs1415013868 2360 dbSNP
rs562130360 2360 dbSNP
rs1228986338 2362 dbSNP
rs1034590748 2364 dbSNP
rs1257124898 2370 dbSNP
rs1205955129 2381 dbSNP
rs1047861342 2382 dbSNP
rs1249491630 2383 dbSNP
rs886623277 2384 dbSNP
rs1014320749 2387 dbSNP
rs568714042 2392 dbSNP
rs1323437030 2393 dbSNP
rs182544243 2404 dbSNP
rs1014971385 2405 dbSNP
rs1231280656 2416 dbSNP
rs1213314024 2418 dbSNP
rs905862955 2436 dbSNP
rs1288651704 2441 dbSNP
rs1262275845 2445 dbSNP
rs1001499454 2449 dbSNP
rs1411066964 2449 dbSNP
rs1488409362 2452 dbSNP
rs1033020114 2476 dbSNP
rs957954391 2478 dbSNP
rs1195446414 2481 dbSNP
rs748288903 2484 dbSNP
rs1461937439 2487 dbSNP
rs1351022296 2503 dbSNP
rs989822353 2506 dbSNP
rs1474470610 2507 dbSNP
rs1417400886 2516 dbSNP
rs994928624 2520 dbSNP
rs1028103416 2523 dbSNP
rs953391344 2530 dbSNP
rs1488755882 2532 dbSNP
rs1020768854 2534 dbSNP
rs1275019738 2538 dbSNP
rs1211572021 2541 dbSNP
rs1333900472 2541 dbSNP
rs529499632 2549 dbSNP
rs966974695 2550 dbSNP
rs1229881750 2564 dbSNP
rs1333427865 2575 dbSNP
rs551024353 2588 dbSNP
rs1305644545 2591 dbSNP
rs886059085 2600 dbSNP
rs866513329 2609 dbSNP
rs1163362625 2618 dbSNP
rs1328589095 2623 dbSNP
rs911681395 2629 dbSNP
rs1416521474 2633 dbSNP
rs1394212453 2641 dbSNP
rs3088313 2652 dbSNP
rs974344174 2653 dbSNP
rs1158416680 2655 dbSNP
rs920267457 2658 dbSNP
rs930885522 2666 dbSNP
rs1181138993 2670 dbSNP
rs1433901330 2680 dbSNP
rs965218800 2688 dbSNP
rs1048471223 2698 dbSNP
rs976545403 2702 dbSNP
rs1467831978 2707 dbSNP
rs912986858 2712 dbSNP
rs943217638 2712 dbSNP
rs539470441 2723 dbSNP
rs1259849315 2724 dbSNP
rs558098337 2728 dbSNP
rs950296008 2730 dbSNP
rs1439380890 2732 dbSNP
rs1311242034 2740 dbSNP
rs1321621937 2746 dbSNP
rs1045937285 2747 dbSNP
rs1383071011 2748 dbSNP
rs745610460 2752 dbSNP
rs1466553838 2754 dbSNP
rs1056464543 2755 dbSNP
rs1209483976 2757 dbSNP
rs1001635119 2763 dbSNP
rs896038432 2771 dbSNP
rs1054436515 2772 dbSNP
rs1381234730 2793 dbSNP
rs1237950517 2794 dbSNP
rs778816817 2821 dbSNP
rs1036528347 2822 dbSNP
rs1010810897 2823 dbSNP
rs769654363 2825 dbSNP
rs995358919 2826 dbSNP
rs1027719387 2829 dbSNP
rs1021325628 2831 dbSNP
rs1232996680 2836 dbSNP
rs562611803 2837 dbSNP
rs1441504418 2841 dbSNP
rs1007528903 2842 dbSNP
rs1008646314 2844 dbSNP
rs1325050744 2846 dbSNP
rs75857661 2852 dbSNP
rs79815498 2854 dbSNP
rs1018210842 2855 dbSNP
rs1377553831 2857 dbSNP
rs965247746 2861 dbSNP
rs1434256081 2863 dbSNP
rs796811334 2867 dbSNP
rs1169593746 2876 dbSNP
rs1474266405 2878 dbSNP
rs1018740770 2882 dbSNP
rs964399739 2883 dbSNP
rs913101447 2887 dbSNP
rs1178621649 2888 dbSNP
rs1255014432 2893 dbSNP
rs967220554 2895 dbSNP
rs1274239324 2897 dbSNP
rs974481329 2909 dbSNP
rs1421864909 2913 dbSNP
rs1337796070 2917 dbSNP
rs920253922 2919 dbSNP
rs1401695472 2921 dbSNP
rs925698594 2927 dbSNP
rs1291726109 2935 dbSNP
rs141195559 2936 dbSNP
rs1336241645 2940 dbSNP
rs1055349028 2947 dbSNP
rs1330765930 2948 dbSNP
rs1352876088 2949 dbSNP
rs114317599 2966 dbSNP
rs1308377867 2969 dbSNP
rs796255529 2969 dbSNP
rs1395748416 2970 dbSNP
rs555438265 2988 dbSNP
rs746214994 2999 dbSNP
rs574334228 3011 dbSNP
rs1415194815 3024 dbSNP
rs950289930 3030 dbSNP
rs762638239 3041 dbSNP
rs763896311 3044 dbSNP
rs116402254 3050 dbSNP
rs1049624416 3053 dbSNP
rs187013294 3064 dbSNP
rs1273003905 3065 dbSNP
rs889170956 3070 dbSNP
rs1337421531 3076 dbSNP
rs529795085 3085 dbSNP
rs1271433075 3087 dbSNP
rs1007974217 3093 dbSNP
rs190665340 3104 dbSNP
rs901834071 3105 dbSNP
rs114290251 3111 dbSNP
rs1197495333 3113 dbSNP
rs114992995 3123 dbSNP
rs1326566718 3127 dbSNP
rs1462769679 3131 dbSNP
rs1392056372 3142 dbSNP
rs528086891 3153 dbSNP
rs902394426 3156 dbSNP
rs540367724 3157 dbSNP
rs370092233 3163 dbSNP
rs150327976 3164 dbSNP
rs1469233451 3168 dbSNP
rs1232749948 3169 dbSNP
rs773939713 3172 dbSNP
rs991191398 3173 dbSNP
rs964535782 3184 dbSNP
rs1174581450 3188 dbSNP
rs995867885 3196 dbSNP
rs374328025 3200 dbSNP
rs949702601 3202 dbSNP
rs1465130142 3203 dbSNP
rs1317713098 3204 dbSNP
rs1286696791 3214 dbSNP
rs972306332 3218 dbSNP
rs919486466 3219 dbSNP
rs569466319 3222 dbSNP
rs533634789 3238 dbSNP
rs930812262 3241 dbSNP
rs1400930842 3247 dbSNP
rs1368756756 3253 dbSNP
rs1324933423 3258 dbSNP
rs951740698 3264 dbSNP
rs983491136 3267 dbSNP
rs907550105 3269 dbSNP
rs943497365 3274 dbSNP
rs1395192717 3280 dbSNP
rs551364896 3296 dbSNP
rs1040465870 3299 dbSNP
rs901864972 3308 dbSNP
rs971617341 3315 dbSNP
rs1393849640 3317 dbSNP
rs1193402922 3319 dbSNP
rs138878064 3324 dbSNP
rs1213920614 3329 dbSNP
rs1233737876 3330 dbSNP
rs1281098978 3334 dbSNP
rs927433383 3337 dbSNP
rs937527072 3345 dbSNP
rs990248078 3346 dbSNP
rs1217426655 3351 dbSNP
rs1302651921 3366 dbSNP
rs1258208308 3370 dbSNP
rs1459477508 3374 dbSNP
rs1214882173 3378 dbSNP
rs376626450 3386 dbSNP
rs1363819298 3387 dbSNP
rs914601273 3390 dbSNP
rs548402214 3392 dbSNP
rs533924064 3393 dbSNP
rs1429619607 3399 dbSNP
rs1375734463 3400 dbSNP
rs1314147812 3403 dbSNP
rs549101682 3432 dbSNP
rs1000518509 3444 dbSNP
rs1374164638 3446 dbSNP
rs1175998299 3448 dbSNP
rs1429419856 3451 dbSNP
rs1267079994 3452 dbSNP
rs946160203 3455 dbSNP
rs1475188157 3458 dbSNP
rs1258562258 3460 dbSNP
rs1201503157 3462 dbSNP
rs1421665837 3467 dbSNP
rs1484739554 3471 dbSNP
rs1032879311 3473 dbSNP
rs1205173857 3475 dbSNP
rs1308987607 3484 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 83452.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguuuucauuaACACCAAAAa 5'
                         | ||||||| 
Target 5' ---------------UAUGGUUUUu 3'
1 - 10
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000305626.5 | 3UTR | UAUGGUUUUUUAUUACUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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