pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PLEKHB2   
Synonyms EVT2
Description pleckstrin homology domain containing B2
Transcript NM_001100623   
Other Transcripts NM_017958   
Expression
Putative miRNA Targets on PLEKHB2
3'UTR of PLEKHB2
(miRNA target sites are highlighted)
>PLEKHB2|NM_001100623|3'UTR
   1 GGGCCTCAAGGTCTTGATGTGCATAGCTTCTGATAACCCTGTGTGCAATAATATGATTTGCAGGGCATTTCTGTTTGTGA
  81 CAAAAGTTTTTAATAATAGTTTTAATCATTCCTTTGAAAGTAGTGATGTCATAATTGTACTAATCCACATAAGTACCACA
 161 GAGAAGGGTTTGAACTGTGCTATTTTGTTCAAATGTTGACTCTCCGGGGGCACTGGCTCATTCCAAGACTGTTCTTGTGC
 241 AACTCTCAGAATACCTTATTTGAGCATACCTGTTTTGAAAGGCATTTTCTTTTTAGAGTTAGGTGTAGTGCTTAAGGGTT
 321 AATTTATTTTCATGTTATGCCAGTAATATAGTGTTGTATGCCTATTGAGTGATTGTGGCAAGAAAAGCTACAGCTTCTTT
 401 GCGTTTAACTTTTTCAAACCACAGACCAGAACTGGTTGCATGTTACTTTAGGAGTTGTGGGTTGGTAAGCTCCCAGGTAC
 481 TTCCCGAGGCTATGGTGTGAGAGCCCCCGTCCTGCCCTCTGGGGCTCCACAGGCCCCTGGCAAGGCCGATGGCTCAGGAT
 561 GATGGGGCACAGCCCGCCTTTGAACAATCATGCTTCAGAAATCTGCCTGACCCTAGCTGCTGCTGCTGCTCACTTTATTC
 641 TTGTATGGCTTTGGTAGGCATACTTGGAGAACATATCCCACATTAGGAATTGATTTAAGCCTGAGAGTTTGAGGGCTTTA
 721 ATCCTTTAAAACTTGGAGAAGCTGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGACCGAGGCGGGC
 801 GGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGC
 881 TGGGCGTGGTGGCAGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGTGTGAACCCAGGAGGCGGAG
 961 CTTGCAGTGAGCCAAGATAGTGCCACTGCACTTCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAA
1041 TCCTGGAGAAGCCAGAACAATATACAAACAAGTATGTGGAGGCAGATTTGCTTTATTCCAAGAGGCTGTTTGAGTGTGTG
1121 TCTGCCTAAGCCTCCTTATAGCCTATTTTTCTACTTGCTGAGAGAGTAATATTAAAGGAACAGTGAGGGAGTGGAAGGAG
1201 AGCCTTAGTTAGAGCGTTCCCATTTCTGGCCTTTGGGGGTTTGCACTGTGCGGGAGATGCTCTCTCATCACTCTGAAGGC
1281 CCATCCTGTGCAGAAGTGGGACTCTGTGGCTGTTCACTGAGCACCAGGGCAGACTGTAGCTGAGCAGACTTGGGTTATGG
1361 ATGGGATATGGGGCCCAGGGACCCTCAGGACACAGGGACCGGCTCAAGGTACCACTCAGCCTGGCCAGGACCCCCAGCTT
1441 TGCTTTTGTTCTTGATCTCTTTGTGATAGAGAAGCTTAGAACATTGAATTTGGAACCCCAAAATGTGTGAGTCTTTGGAA
1521 AACCCATTCCAGCCTTTCTTCAAATGCTCTTATTTTCAGTATATGAAGTGTGTATTTGAAATATTCATATTTCTGTTATT
1601 TCTTGTTTTCAAGCTCTGAATTATTGCAGTTTTCTGTCCTGCATGCTTTCAACAGTGTGCTTTTACAGTGGCAGTTTAGC
1681 ACAGCGAATGTCCCTGCCCCACACTCCATATGGTCCTGTTTTCCTGAAAATACACTCCAGGTAGCACAGACTTGTTATTT
1761 TGCCTGGCTGGTTACACACATGCTGTCTTGCTTTGCTGCTCAGCCACCTCCCTCTGAGGCCAACTTAGGCCAACCTACAT
1841 AGGACTCCATCTTTAGCGAGACACCAGAGACACCTAGTGATGACCACGGGTCTGCTTTTCTCTCTGATCCTAGGGGACTT
1921 GTTGACATGGGAGTGTCTGTTTCCACATGGAAGGATGTCTGTTTATCTCTCATCTCTGAATAGATGTATGACAACTCTAG
2001 TGTCCATGGTTTAAAATGTTGCTTTGAGGATTTTCCATCCTGTATAAGAAGAATGGCTTTCTTCAGATTATAATCGTTAT
2081 TAAAGCTGTATGTACACTTTACTTAAAAACTATTAACAGTTTTTCATGTTGCACTGGTGGTAATTTTGAACTTGGAATTA
2161 CTGGGTGGGAATTCCAGGAACCACAGAGTATTGATTTTTGCTGCCAAAATGCTCTTGAAGCAGATGTCCCTGTGCTCCCC
2241 TGGCTGCTTCTGGCTGAAGGGGGGAGGTGTAGACTGAAGCTTGGGCACTCATGTGTGTCCCCTCCCCAGTCCCCATCCTA
2321 GTGGGGCCAGTCTCATTAGGCAGCCATAGATAAGCCTGGAACTTGGCTGTCATTAGTGACTTGATCCTGGTATGAAATGC
2401 ATACTGGGTATAAGGTTGCTCAGGTATTTTATTTCCTTGGCCACAACTCCCATAGATGCCAATGTTTTGATAGCCTCAGT
2481 TTCTCAACGATGTCTTTTGTTTACAGTGCTACACTTAGTGTGAGTCAAGAAGTGCTTGAGTTACAAGAAACTTCTTATTC
2561 AGGTTTGAGTAAGCATTTTACTTCCATGTGTACTTTTAAATAATCCATACCTTGAAGAAGTTGGCCAATGATATTATATA
2641 CATGCTGATCTGATTGTTCTTTTCATTCCTTGAGTCAACTTCAGGGTCTTGGATACTAAAGAGAAGGAGAACTGTGGTTA
2721 ATGTTTTGGATCATCATTTGTGAACAAGGCCAGACTTTGCCCATTTTAGGCTATCCAGGACTTAAGGTAGCCATCTGGAT
2801 CATAAGAAGGTCCTGCAGTTGAGACAAAATGACCCAAGTGTATTTTCCACAAGTTTTGATCCTGTGTAATATTTCTTTTT
2881 CCTTCCCTAGTGTATGTAGATACAAGGCATGGAATGCAGTTCCACTTTCTCCCCAGAGTTGATCTTTTTGTGATTGCTTT
2961 CCCGTCTCTAGTAGTATTCTGTTGTGTCTAGAGAACTGATTTTTTCCTACATACGCAAATTGTACATTTGTAAGTGAAAA
3041 TGTCAATACATTAAAGCATTAACCTTAAAGCATGTTTCAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gguaGAAG-GAAGUCGGAg 5'
              || | ||||||||| 
Target 5' gccaCTGCACTTCAGCCTg 3'
982 - 1000 154.00 -19.00
2
miRNA  3' gguagAAGG-AAGUCGGAg 5'
               | ||  ||||||| 
Target 5' caaggTACCACTCAGCCTg 3'
1405 - 1423 141.00 -10.90
3
miRNA  3' gguaGAAGGA--AGUCGGag 5'
              :|| ||  ||||||  
Target 5' ttgcTTTGCTGCTCAGCCac 3'
1788 - 1807 128.00 -10.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30144192 2 COSMIC
COSN31501179 3 COSMIC
COSN30166799 27 COSMIC
COSN30164934 33 COSMIC
COSN26989408 44 COSMIC
COSN30105081 54 COSMIC
COSN26989410 66 COSMIC
COSN30173841 72 COSMIC
COSN30124419 74 COSMIC
COSN31594490 79 COSMIC
COSN31560163 84 COSMIC
COSN31561211 93 COSMIC
COSN31567171 108 COSMIC
COSN31525347 111 COSMIC
COSN30107341 121 COSMIC
COSN31508025 126 COSMIC
COSN30533891 183 COSMIC
COSN30131891 208 COSMIC
COSN32057612 349 COSMIC
COSN5781435 588 COSMIC
COSN20693162 1562 COSMIC
COSN22697016 1625 COSMIC
COSN17075746 2113 COSMIC
COSN25994451 2491 COSMIC
COSN25578628 2956 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780443658 2 dbSNP
rs1035967957 4 dbSNP
rs371907941 5 dbSNP
rs1247120560 6 dbSNP
rs746144503 8 dbSNP
rs769564127 10 dbSNP
rs368579971 14 dbSNP
rs898943484 18 dbSNP
rs772262573 19 dbSNP
rs994963843 20 dbSNP
rs750062545 22 dbSNP
rs1366806525 26 dbSNP
rs563055967 31 dbSNP
rs578139079 33 dbSNP
rs548852703 34 dbSNP
rs1299325036 37 dbSNP
rs1433309248 38 dbSNP
rs200833332 40 dbSNP
rs767269085 42 dbSNP
rs1395121842 46 dbSNP
rs1008828647 48 dbSNP
rs775571760 51 dbSNP
rs1466243198 52 dbSNP
rs545681284 52 dbSNP
rs573859854 53 dbSNP
rs1040279038 54 dbSNP
rs542249172 63 dbSNP
rs1263876000 64 dbSNP
rs1018909259 67 dbSNP
rs1329947246 68 dbSNP
rs1260779529 73 dbSNP
rs996389690 93 dbSNP
rs1032774680 100 dbSNP
rs892864045 103 dbSNP
rs1009927059 105 dbSNP
rs762902813 108 dbSNP
rs1278882665 111 dbSNP
rs767808582 127 dbSNP
rs560441014 133 dbSNP
rs966968354 138 dbSNP
rs1396970904 140 dbSNP
rs750774500 140 dbSNP
rs1407892757 141 dbSNP
rs527662638 150 dbSNP
rs1300443011 154 dbSNP
rs956609598 164 dbSNP
rs1363700875 166 dbSNP
rs756390812 168 dbSNP
rs1423757925 171 dbSNP
rs1020691411 177 dbSNP
rs562204270 180 dbSNP
rs1169070450 183 dbSNP
rs368765638 191 dbSNP
rs979231981 196 dbSNP
rs927488409 206 dbSNP
rs372423721 207 dbSNP
rs780252309 223 dbSNP
rs531790207 224 dbSNP
rs917522113 227 dbSNP
rs572782832 238 dbSNP
rs758422843 252 dbSNP
rs1273820611 254 dbSNP
rs940933213 255 dbSNP
rs1338091727 276 dbSNP
rs1036038898 296 dbSNP
rs754994906 306 dbSNP
rs930705647 314 dbSNP
rs1335093591 317 dbSNP
rs1451467686 318 dbSNP
rs1249792174 321 dbSNP
rs187970222 342 dbSNP
rs1050562544 343 dbSNP
rs1368757726 345 dbSNP
rs1163797843 347 dbSNP
rs550050348 348 dbSNP
rs112785029 349 dbSNP
rs944648185 350 dbSNP
rs1182689979 353 dbSNP
rs1040330830 361 dbSNP
rs900387927 365 dbSNP
rs564687124 370 dbSNP
rs1040215470 374 dbSNP
rs1436129367 378 dbSNP
rs1400753267 392 dbSNP
rs1223923672 403 dbSNP
rs892416552 404 dbSNP
rs1313386710 413 dbSNP
rs1245680835 424 dbSNP
rs1373688891 425 dbSNP
rs554375340 435 dbSNP
rs1439510599 443 dbSNP
rs1322033722 450 dbSNP
rs1323573354 455 dbSNP
rs1009934462 464 dbSNP
rs1363624547 474 dbSNP
rs1385838534 476 dbSNP
rs1019958243 478 dbSNP
rs906880720 485 dbSNP
rs770871593 486 dbSNP
rs1009461782 487 dbSNP
rs1434965176 491 dbSNP
rs1020304190 496 dbSNP
rs552654447 504 dbSNP
rs1342619673 509 dbSNP
rs1000295354 510 dbSNP
rs1200163453 523 dbSNP
rs1490999177 525 dbSNP
rs867303117 526 dbSNP
rs1222264008 528 dbSNP
rs1283781402 539 dbSNP
rs566736290 541 dbSNP
rs992983682 546 dbSNP
rs757208133 547 dbSNP
rs959879290 548 dbSNP
rs1210845774 549 dbSNP
rs1266272775 559 dbSNP
rs745654236 566 dbSNP
rs1024396894 571 dbSNP
rs534099985 576 dbSNP
rs1207971061 578 dbSNP
rs1256852208 583 dbSNP
rs116068469 588 dbSNP
rs16856544 598 dbSNP
rs1343609033 603 dbSNP
rs1302448986 610 dbSNP
rs972685816 611 dbSNP
rs1028237349 614 dbSNP
rs1156585187 616 dbSNP
rs200776282 616 dbSNP
rs867119070 616 dbSNP
rs920281390 618 dbSNP
rs930340849 621 dbSNP
rs985812688 629 dbSNP
rs907934098 633 dbSNP
rs1472688503 646 dbSNP
rs910328072 650 dbSNP
rs1244212408 655 dbSNP
rs766208673 661 dbSNP
rs570527857 664 dbSNP
rs1160970318 669 dbSNP
rs938682431 671 dbSNP
rs1409047176 677 dbSNP
rs72863235 683 dbSNP
rs1320834013 685 dbSNP
rs945280718 688 dbSNP
rs1282041977 691 dbSNP
rs556031238 691 dbSNP
rs1382712187 697 dbSNP
rs1363912627 700 dbSNP
rs931888448 704 dbSNP
rs1429763913 712 dbSNP
rs187881052 725 dbSNP
rs914398995 740 dbSNP
rs1471056949 741 dbSNP
rs945844107 743 dbSNP
rs1337955688 752 dbSNP
rs1044003370 754 dbSNP
rs140906024 755 dbSNP
rs1000626425 757 dbSNP
rs1034339404 764 dbSNP
rs1185188220 768 dbSNP
rs1485735775 769 dbSNP
rs1333865306 775 dbSNP
rs1336755478 782 dbSNP
rs13410017 785 dbSNP
rs1014269314 789 dbSNP
rs1459647844 790 dbSNP
rs1024429844 792 dbSNP
rs113368549 794 dbSNP
rs1309254634 795 dbSNP
rs1293312755 798 dbSNP
rs1328561743 801 dbSNP
rs1224279173 802 dbSNP
rs972249408 808 dbSNP
rs1028363382 809 dbSNP
rs1338383014 814 dbSNP
rs556622012 816 dbSNP
rs576380031 822 dbSNP
rs986229648 832 dbSNP
rs542923914 842 dbSNP
rs1484223583 851 dbSNP
rs910190815 854 dbSNP
rs560937685 856 dbSNP
rs1027865623 857 dbSNP
rs1185747993 863 dbSNP
rs1442454729 865 dbSNP
rs1242135514 866 dbSNP
rs531658034 868 dbSNP
rs944459924 870 dbSNP
rs543879115 876 dbSNP
rs1005023858 877 dbSNP
rs975792637 886 dbSNP
rs185324285 887 dbSNP
rs1015044803 890 dbSNP
rs1183827091 898 dbSNP
rs1249247755 899 dbSNP
rs532656737 903 dbSNP
rs945238353 904 dbSNP
rs1043547815 905 dbSNP
rs925218527 909 dbSNP
rs937911898 913 dbSNP
rs1055738928 915 dbSNP
rs1312256014 916 dbSNP
rs894441505 918 dbSNP
rs1176213055 931 dbSNP
rs1375662491 934 dbSNP
rs1378880375 935 dbSNP
rs1296455526 939 dbSNP
rs1464948164 942 dbSNP
rs1014300346 950 dbSNP
rs3203233 951 dbSNP
rs1165932827 957 dbSNP
rs1412128757 958 dbSNP
rs1306401908 965 dbSNP
rs1350144113 974 dbSNP
rs1367581746 975 dbSNP
rs566672510 977 dbSNP
rs921918825 982 dbSNP
rs111315902 983 dbSNP
rs1247823139 983 dbSNP
rs953371755 985 dbSNP
rs1220045536 986 dbSNP
rs1310552393 987 dbSNP
rs1358497868 988 dbSNP
rs1230895120 990 dbSNP
rs990476259 994 dbSNP
rs1255357256 996 dbSNP
rs1342596379 999 dbSNP
rs527541368 1006 dbSNP
rs1249131384 1007 dbSNP
rs1482494617 1009 dbSNP
rs866629799 1013 dbSNP
rs369527515 1016 dbSNP
rs945896569 1016 dbSNP
rs1268753200 1019 dbSNP
rs1390504504 1021 dbSNP
rs1430963376 1023 dbSNP
rs746126236 1024 dbSNP
rs762205605 1024 dbSNP
rs1480467760 1025 dbSNP
rs766474080 1025 dbSNP
rs868710396 1025 dbSNP
rs1198757901 1033 dbSNP
rs1270356107 1033 dbSNP
rs1391398733 1037 dbSNP
rs994096688 1038 dbSNP
rs75563117 1042 dbSNP
rs1041521302 1043 dbSNP
rs1431982439 1044 dbSNP
rs1027810411 1045 dbSNP
rs1167159071 1049 dbSNP
rs952411356 1054 dbSNP
rs549336241 1061 dbSNP
rs1458570518 1065 dbSNP
rs1353187208 1068 dbSNP
rs1295512504 1073 dbSNP
rs1227916290 1084 dbSNP
rs928413675 1095 dbSNP
rs1285226600 1097 dbSNP
rs938433299 1101 dbSNP
rs1365512248 1107 dbSNP
rs1017286733 1109 dbSNP
rs370221519 1113 dbSNP
rs1302543795 1114 dbSNP
rs975740168 1119 dbSNP
rs1365897755 1122 dbSNP
rs1430797934 1122 dbSNP
rs1173561869 1127 dbSNP
rs12991512 1131 dbSNP
rs1477688561 1135 dbSNP
rs537471055 1136 dbSNP
rs1195105035 1140 dbSNP
rs1247129468 1146 dbSNP
rs1445040273 1146 dbSNP
rs188239710 1154 dbSNP
rs1230546612 1155 dbSNP
rs140276339 1160 dbSNP
rs1341199426 1171 dbSNP
rs1221770753 1174 dbSNP
rs1344975914 1178 dbSNP
rs1271265409 1179 dbSNP
rs1230203601 1182 dbSNP
rs773877279 1188 dbSNP
rs979685630 1203 dbSNP
rs888013961 1205 dbSNP
rs1452936579 1208 dbSNP
rs1407824646 1215 dbSNP
rs555638472 1216 dbSNP
rs1249167058 1217 dbSNP
rs1451829450 1221 dbSNP
rs1406838479 1235 dbSNP
rs1187266630 1236 dbSNP
rs937928519 1240 dbSNP
rs1389323617 1242 dbSNP
rs1389870447 1244 dbSNP
rs1054932738 1246 dbSNP
rs1245168685 1247 dbSNP
rs901961602 1249 dbSNP
rs917824537 1252 dbSNP
rs1198087608 1258 dbSNP
rs998018370 1261 dbSNP
rs1029040377 1265 dbSNP
rs1167164691 1268 dbSNP
rs1247165536 1271 dbSNP
rs192959068 1279 dbSNP
rs1045691599 1286 dbSNP
rs990138422 1287 dbSNP
rs1446766118 1290 dbSNP
rs1335865102 1292 dbSNP
rs1330235192 1294 dbSNP
rs1408150914 1297 dbSNP
rs1369858464 1307 dbSNP
rs1021528202 1310 dbSNP
rs897934231 1317 dbSNP
rs967251282 1319 dbSNP
rs1180373473 1328 dbSNP
rs7583296 1350 dbSNP
rs1437102945 1351 dbSNP
rs1184066858 1357 dbSNP
rs1482397299 1364 dbSNP
rs1251685020 1365 dbSNP
rs553908011 1371 dbSNP
rs1223747808 1376 dbSNP
rs1049713698 1377 dbSNP
rs1295329219 1383 dbSNP
rs887914982 1398 dbSNP
rs868488560 1401 dbSNP
rs1350865589 1402 dbSNP
rs1280840662 1405 dbSNP
rs184663420 1407 dbSNP
rs376875376 1412 dbSNP
rs1349851630 1415 dbSNP
rs966282567 1421 dbSNP
rs1406653114 1424 dbSNP
rs997212199 1425 dbSNP
rs548175553 1435 dbSNP
rs773636814 1438 dbSNP
rs1408983419 1444 dbSNP
rs966878207 1455 dbSNP
rs760964564 1460 dbSNP
rs1048040530 1496 dbSNP
rs1319604551 1497 dbSNP
rs542913354 1501 dbSNP
rs1181111378 1503 dbSNP
rs1200816396 1510 dbSNP
rs112211911 1512 dbSNP
rs117985493 1526 dbSNP
rs1490964535 1527 dbSNP
rs925116032 1550 dbSNP
rs940913954 1564 dbSNP
rs1036581519 1573 dbSNP
rs959269389 1585 dbSNP
rs1226140948 1586 dbSNP
rs990610562 1589 dbSNP
rs145318597 1591 dbSNP
rs1283296389 1599 dbSNP
rs1225292385 1604 dbSNP
rs1365392759 1608 dbSNP
rs917855660 1613 dbSNP
rs1431152082 1628 dbSNP
rs1465868324 1629 dbSNP
rs1207324808 1637 dbSNP
rs1411333584 1643 dbSNP
rs1177170582 1645 dbSNP
rs1248018249 1668 dbSNP
rs1191031517 1671 dbSNP
rs1475959963 1678 dbSNP
rs1483782746 1679 dbSNP
rs1206445826 1681 dbSNP
rs1464120004 1683 dbSNP
rs76879872 1686 dbSNP
rs1412100986 1697 dbSNP
rs1012017702 1705 dbSNP
rs1215033857 1707 dbSNP
rs1363849324 1710 dbSNP
rs1295040996 1714 dbSNP
rs1423421958 1716 dbSNP
rs1433184231 1717 dbSNP
rs981421358 1741 dbSNP
rs1160184685 1749 dbSNP
rs1414200645 1755 dbSNP
rs533030130 1771 dbSNP
rs1467620754 1774 dbSNP
rs1357451338 1781 dbSNP
rs919241390 1782 dbSNP
rs1176015296 1783 dbSNP
rs1429561842 1808 dbSNP
rs1422113059 1809 dbSNP
rs1187054675 1810 dbSNP
rs137944543 1821 dbSNP
rs1243346591 1831 dbSNP
rs1049112084 1832 dbSNP
rs1184950239 1834 dbSNP
rs1344576124 1835 dbSNP
rs532451329 1840 dbSNP
rs1254861992 1858 dbSNP
rs1448456040 1859 dbSNP
rs1304322484 1863 dbSNP
rs755083002 1867 dbSNP
rs977317913 1868 dbSNP
rs1309123811 1869 dbSNP
rs1035546615 1870 dbSNP
rs1227388882 1877 dbSNP
rs1364783509 1882 dbSNP
rs943558458 1888 dbSNP
rs541545095 1889 dbSNP
rs1397966670 1890 dbSNP
rs902107369 1891 dbSNP
rs755920400 1895 dbSNP
rs765273230 1898 dbSNP
rs915667852 1903 dbSNP
rs16856546 1905 dbSNP
rs757207598 1947 dbSNP
rs1215638984 1948 dbSNP
rs1372945830 1951 dbSNP
rs1167151014 1956 dbSNP
rs113759360 1957 dbSNP
rs1313244144 1962 dbSNP
rs1212895454 1966 dbSNP
rs781118015 1970 dbSNP
rs1000931723 1971 dbSNP
rs983821844 1974 dbSNP
rs1177260093 1981 dbSNP
rs1032130429 1983 dbSNP
rs372837800 1988 dbSNP
rs1249489352 1996 dbSNP
rs959363683 2002 dbSNP
rs1359928894 2007 dbSNP
rs527528868 2008 dbSNP
rs1236018559 2019 dbSNP
rs1293588725 2037 dbSNP
rs939629194 2044 dbSNP
rs1320129605 2045 dbSNP
rs1312189661 2046 dbSNP
rs780416744 2048 dbSNP
rs868361930 2063 dbSNP
rs570296720 2069 dbSNP
rs149446967 2076 dbSNP
rs376047139 2077 dbSNP
rs1183144576 2079 dbSNP
rs1366584783 2080 dbSNP
rs933514553 2082 dbSNP
rs1254326774 2088 dbSNP
rs1050599741 2089 dbSNP
rs1159244732 2094 dbSNP
rs1471633069 2096 dbSNP
rs1283438340 2101 dbSNP
rs1409077418 2103 dbSNP
rs1158585670 2114 dbSNP
rs1490476959 2118 dbSNP
rs1024735407 2119 dbSNP
rs531649446 2127 dbSNP
rs189602026 2129 dbSNP
rs1414933590 2135 dbSNP
rs1487652837 2137 dbSNP
rs889241915 2138 dbSNP
rs1239976090 2142 dbSNP
rs1331352437 2150 dbSNP
rs1286456920 2152 dbSNP
rs970637272 2165 dbSNP
rs972585435 2177 dbSNP
rs1357158822 2183 dbSNP
rs752114337 2185 dbSNP
rs1043090719 2203 dbSNP
rs137986306 2213 dbSNP
rs1308260953 2215 dbSNP
rs998782749 2219 dbSNP
rs755274937 2221 dbSNP
rs1407633864 2228 dbSNP
rs1385821326 2238 dbSNP
rs1035597463 2239 dbSNP
rs1480762232 2241 dbSNP
rs539296839 2245 dbSNP
rs1367697590 2249 dbSNP
rs1013204318 2251 dbSNP
rs1022789256 2255 dbSNP
rs1262113142 2259 dbSNP
rs191251725 2261 dbSNP
rs571231906 2268 dbSNP
rs1208180213 2271 dbSNP
rs985194868 2281 dbSNP
rs909323741 2285 dbSNP
rs943403287 2288 dbSNP
rs961045321 2291 dbSNP
rs976403326 2309 dbSNP
rs1222560228 2319 dbSNP
rs1482169539 2321 dbSNP
rs923542596 2323 dbSNP
rs1469850009 2324 dbSNP
rs1051067129 2326 dbSNP
rs933587408 2326 dbSNP
rs1247297643 2327 dbSNP
rs114887725 2329 dbSNP
rs1479057552 2330 dbSNP
rs1039236262 2333 dbSNP
rs1373441929 2350 dbSNP
rs1192840825 2352 dbSNP
rs910731324 2357 dbSNP
rs1451634042 2360 dbSNP
rs1246389094 2368 dbSNP
rs1188059795 2371 dbSNP
rs1443096758 2373 dbSNP
rs781539034 2378 dbSNP
rs1430980465 2388 dbSNP
rs538338966 2402 dbSNP
rs1433837709 2405 dbSNP
rs1231034287 2407 dbSNP
rs933565165 2415 dbSNP
rs1296448209 2419 dbSNP
rs1042679231 2422 dbSNP
rs902761862 2423 dbSNP
rs1057055998 2425 dbSNP
rs1331556414 2428 dbSNP
rs1372209414 2434 dbSNP
rs1000559556 2437 dbSNP
rs1327779489 2440 dbSNP
rs1032409356 2443 dbSNP
rs1427555874 2444 dbSNP
rs1389266449 2445 dbSNP
rs1168230463 2447 dbSNP
rs894912447 2451 dbSNP
rs553499173 2458 dbSNP
rs1331164667 2459 dbSNP
rs1239347463 2462 dbSNP
rs1185503916 2463 dbSNP
rs879115262 2466 dbSNP
rs879100886 2469 dbSNP
rs1023264763 2476 dbSNP
rs952594975 2482 dbSNP
rs184880343 2486 dbSNP
rs1015381914 2489 dbSNP
rs368404007 2490 dbSNP
rs1274292069 2493 dbSNP
rs961098237 2495 dbSNP
rs1024766494 2499 dbSNP
rs536484127 2502 dbSNP
rs1358007430 2503 dbSNP
rs970503115 2509 dbSNP
rs922285839 2533 dbSNP
rs556372888 2537 dbSNP
rs112657865 2545 dbSNP
rs115726962 2546 dbSNP
rs952721689 2547 dbSNP
rs1340487251 2561 dbSNP
rs112120576 2570 dbSNP
rs1369723173 2572 dbSNP
rs909180471 2573 dbSNP
rs1303520988 2580 dbSNP
rs1197308481 2582 dbSNP
rs910764806 2588 dbSNP
rs1416190725 2593 dbSNP
rs964790830 2594 dbSNP
rs974789208 2597 dbSNP
rs769356460 2600 dbSNP
rs1472523712 2605 dbSNP
rs1453400819 2609 dbSNP
rs978879932 2610 dbSNP
rs1482329517 2614 dbSNP
rs143874931 2629 dbSNP
rs1222762079 2632 dbSNP
rs1042930607 2634 dbSNP
rs934737262 2635 dbSNP
rs555757313 2637 dbSNP
rs924245437 2643 dbSNP
rs558635948 2650 dbSNP
rs748986844 2657 dbSNP
rs577207227 2670 dbSNP
rs1226561265 2677 dbSNP
rs375268888 2678 dbSNP
rs1189139046 2679 dbSNP
rs1438322492 2683 dbSNP
rs1347855046 2690 dbSNP
rs1470678448 2692 dbSNP
rs888347812 2697 dbSNP
rs1389490265 2699 dbSNP
rs1391719496 2702 dbSNP
rs1005413003 2704 dbSNP
rs1471932758 2714 dbSNP
rs1411830207 2716 dbSNP
rs189346325 2717 dbSNP
rs148166435 2724 dbSNP
rs896943811 2736 dbSNP
rs997943887 2739 dbSNP
rs768328023 2744 dbSNP
rs1166957309 2746 dbSNP
rs1391050715 2751 dbSNP
rs777534679 2754 dbSNP
rs1245303409 2764 dbSNP
rs1406576807 2767 dbSNP
rs1029789649 2794 dbSNP
rs1320958407 2798 dbSNP
rs953758132 2806 dbSNP
rs1436378515 2810 dbSNP
rs906292416 2816 dbSNP
rs769175990 2818 dbSNP
rs1017877361 2819 dbSNP
rs968938513 2822 dbSNP
rs1220838022 2825 dbSNP
rs572252198 2827 dbSNP
rs978931795 2828 dbSNP
rs1363453816 2831 dbSNP
rs1440522190 2841 dbSNP
rs1366191543 2849 dbSNP
rs1025887882 2852 dbSNP
rs372306183 2853 dbSNP
rs924789593 2854 dbSNP
rs934789638 2860 dbSNP
rs1284973379 2864 dbSNP
rs1358805305 2866 dbSNP
rs1226849523 2870 dbSNP
rs1272548528 2876 dbSNP
rs542808880 2888 dbSNP
rs1158491264 2898 dbSNP
rs1423522356 2900 dbSNP
rs1209260433 2901 dbSNP
rs1249891777 2902 dbSNP
rs1005840686 2911 dbSNP
rs1016278623 2916 dbSNP
rs964738950 2917 dbSNP
rs1186225319 2919 dbSNP
rs917291895 2921 dbSNP
rs948778184 2922 dbSNP
rs1212165419 2923 dbSNP
rs561158139 2925 dbSNP
rs974738545 2926 dbSNP
rs1192266325 2927 dbSNP
rs1044774537 2930 dbSNP
rs1368855627 2932 dbSNP
rs1228832725 2934 dbSNP
rs1343204541 2935 dbSNP
rs76019946 2940 dbSNP
rs1473552421 2949 dbSNP
rs1162356140 2952 dbSNP
rs1361365091 2953 dbSNP
rs142030629 2954 dbSNP
rs954762665 2963 dbSNP
rs978296292 2964 dbSNP
rs773788726 2965 dbSNP
rs924082291 2971 dbSNP
rs181765002 2976 dbSNP
rs936943588 2978 dbSNP
rs541733291 2980 dbSNP
rs1392369158 2986 dbSNP
rs1381991281 2988 dbSNP
rs1166331381 2998 dbSNP
rs1335221597 3000 dbSNP
rs1448437943 3000 dbSNP
rs1183086936 3012 dbSNP
rs1342637281 3013 dbSNP
rs1446013080 3014 dbSNP
rs1054413447 3015 dbSNP
rs747693193 3020 dbSNP
rs896996204 3031 dbSNP
rs998406204 3041 dbSNP
rs1029440786 3045 dbSNP
rs947764872 3047 dbSNP
rs187042877 3050 dbSNP
rs150663496 3051 dbSNP
rs1377000781 3060 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 55041.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguaGAAG-GAAGUCggag 5'
              || | ||||||    
Target 5' gccaCUGCACUUCAG---- 3'
6 - 20
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguAGAAG--GAAGUCGGAg 5'
             |||||  | ||||||| 
Target 5' cauUCUUCUGCCUCAGCCUc 3'
5 - 24
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_017958 | 3UTR | GGGACCCUCAGGACACAGGGACCGGCUCAAGGUACCACUCAGCCUGGCCAGGACCCCCAGCUUUGCUUUUGUUCUUGAUCUCUUUGUGAUAGAGAAGCUUAGAACAUUGAAUUUGGAACCCCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_017958 | 3UTR | GACCCUCAGGACACAGGGACCGGCUCAAGGUACCACUCAGCCUGGCCAGGACCCCCAGCUUUGCUUUUGUUCUUGAUCUCUUUGUGAUAGAGAAGCUUAGAACAUUGAAUUUGGAACCCCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001100623 | 3UTR | CAGGGACCCUCAGGACACAGGGACCGGCUCAAGGUACCACUCAGCCUGGCCAGGACCCCCAGCUUUGCUUUUGUUCUUGAUCUCUUUGUGAUAGAGAAGCUUAGAACAUUGAAUUUGGAACCCCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_017958 | 3UTR | CACAGGGACCGGCUCAAGGUACCACUCAGCCUGGCCAGGACCCCCAGCUUUGCUUUUGUUCUUGAUCUCUUUGUGAUAGAGAAGCUUAGAACAUUGAAUUUGGAACCCCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_017958 | 3UTR | GGCCCAGGGACCCUCAGGACACAGGGACCGGCUCAAGGUACCACUCAGCCUGGCCAGGACCCCCAGCUUUGCUUUUGUUCUUGAUCUCUUUGUGAUAGAGAAGCUUAGAACAUUGAAUUUGGAACCCCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001100623 | 3UTR | GGACCCUCAGGACACAGGGACCGGCUCAAGGUACCACUCAGCCUGGCCAGGACCCCCAGCUUUGCUUUUGUUCUUGAUCUCUUUGUGAUAGAGAAGCUUAGAACAUUGAAUUUGGAACCCCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000438882.2 | 3UTR | ACGCCAUUCUUCUGCCUCAGCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000438882.2 | 3UTR | AUAGUGCCACUGCACUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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