pre-miRNA Information
pre-miRNA hsa-mir-3123   
Genomic Coordinates chr1: 241132272 - 241132346
Description Homo sapiens miR-3123 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3123
Sequence 49| CAGAGAAUUGUUUAAUC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 + 241132323 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1453759221 1 dbSNP
rs968575171 5 dbSNP
rs979407933 9 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NR2E1   
Synonyms TLL, TLX, XTLL
Description nuclear receptor subfamily 2 group E member 1
Transcript NM_003269   
Expression
Putative miRNA Targets on NR2E1
3'UTR of NR2E1
(miRNA target sites are highlighted)
>NR2E1|NM_003269|3'UTR
   1 GCTCACAAGATACCCACTTTTCAGGATGGGACAGTATCAGATGAACTTCAACCCATGGAGAACAAGCCTCAACTAACAAA
  81 CCCTTCAGGAAGCATATACCGGGGAATGTGTAGCCTTCAGGAAAAAAATGCCAATTGACACAAAGCATTCCAGTAGCTAT
 161 GACCTGCCGCCCTGACCAGGATAGGGCGGGTGGGAAGGAGAGGGGTGCAACAGGACCGCCTGCACTGAAAACTCACTGCT
 241 GCCATGCCCTGGGAGGGGGCAAACTGGGGGTTGCCACAGGCCGTGCCATTCTGCCTCTTACCTGGAAGATCAGGCTGAAC
 321 GATCAAAAGCTGAAACATAAGTAGTGCTTTCTCTTCCTTTTTAGCATACAAAGTTTGGTAACCAAATATAGCTCTGTGTA
 401 TAACATCGTACTGCGGCCTTCAAAACTACGTTATGTTGGAGCATTTATTTTAAAAATAATGGTAGGTTTTAAATTAAAAG
 481 TGTTATCAAAAGTTTCCCCTCTATTGTAATACATTATTAAGTGGCCTTCAGAACTGAGTTAATAAGTGAAAAGTAGCTTA
 561 TGCCATGTGATTTGCTTTTTCTCTATCTTCTTTTTTCTTTTCTTTCTCTTTCTTTTGTTCTTTCTTCTTCTTTTTTAATA
 641 CCATAGGCCAGGCAACCTTGTCAAAGGAATTGATGGACAAAATGAGATTCTCACCAGGACTTCAGGTTGGATAACATGTC
 721 AAAAAGAGAAGAGCTTTACTAAAAGAACATAAGTCAAGGGAGGATGAATAAAAACAGCAAAACCAAATAAAGTGGAGATG
 801 AGTGATTGAGTGAGGTAGATTGCTGTCCCGTTAACATAGTGCTGAAACCAAAGGCAGTGGGGGTCCAAACTCGTGGTGCA
 881 GCAAGTCACACCAGACAGGAAACGAATATGGACGTAATTGCAGAAGGAACTTCAAGGAGATGAATGAATGCTAAAAGGGT
 961 TCTTGACTGATCCATTGCTAACAGCCTGAGACTCTTCAATGCCTTTCCGAAAACTGGTTTCTAGTAAAGCCTTGAATGAA
1041 CACACACACACACACACACACACACACACACACACACACACACACACACCGTCCTACACTTTAAGCTGCTCCTTTGGTAT
1121 GACTCTATACTTATGGAAATGTAGAAACAAACATTTTTAAATAGCTGCTGTACTTTTCACATTTTGATTTATTAGGTACT
1201 AGCACTGAGGAAAAAAAATTCAGCACTTGGACTATCATAGGATGAGTAAAACTTTTCTTGTACAAAGTGAATTAACTGAT
1281 TTGTGAAGTTAAAAGGTTGTACTCATTGTATTTACAAAGAATAAAAATATATTGAATTTAAATGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuaauuuguuAAGAGAc 5'
                    |||||| 
Target 5' gatttgctttTTCTCTa 3'
569 - 585 120.00 -5.20
2
miRNA  3' cuAAUUUGUUAAGAGac 5'
            | ||| ::||||:  
Target 5' gcTAAAAGGGTTCTTga 3'
950 - 966 103.00 -5.60
3
miRNA  3' cuaAUUUGU---UA-AGAGAc 5'
             ||| ||   ||  |||| 
Target 5' tggTAACCAAATATAGCTCTg 3'
376 - 396 86.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30133554 11 COSMIC
COSN30466945 23 COSMIC
COSN30180801 113 COSMIC
COSN30143764 120 COSMIC
COSN30167796 141 COSMIC
COSN30193684 151 COSMIC
COSN30143487 168 COSMIC
COSN23391641 170 COSMIC
COSN24310620 181 COSMIC
COSN1322684 188 COSMIC
COSN9963587 331 COSMIC
COSN5163334 345 COSMIC
COSN4951518 430 COSMIC
COSN26896540 699 COSMIC
COSN29040778 1090 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1445886848 4 dbSNP
rs768543085 7 dbSNP
rs1478266675 8 dbSNP
rs776618769 11 dbSNP
rs762993565 25 dbSNP
rs766453152 28 dbSNP
rs1482190978 39 dbSNP
rs1170590583 40 dbSNP
rs1243638081 44 dbSNP
rs774734793 47 dbSNP
rs1345754871 52 dbSNP
rs561108161 54 dbSNP
rs1056729752 61 dbSNP
rs1283748223 64 dbSNP
rs1021158610 66 dbSNP
rs968304284 68 dbSNP
rs895450764 73 dbSNP
rs1381786957 78 dbSNP
rs1324745219 87 dbSNP
rs1377170248 88 dbSNP
rs2233496 94 dbSNP
rs1400947938 97 dbSNP
rs1360488889 98 dbSNP
rs547085495 100 dbSNP
rs921455518 101 dbSNP
rs954254830 102 dbSNP
rs1417186862 115 dbSNP
rs1353907807 120 dbSNP
rs758378092 122 dbSNP
rs560670351 125 dbSNP
rs544163454 128 dbSNP
rs532712612 129 dbSNP
rs186243948 132 dbSNP
rs766482839 136 dbSNP
rs1036070617 141 dbSNP
rs919169168 151 dbSNP
rs930577381 152 dbSNP
rs1449822736 153 dbSNP
rs1224615109 157 dbSNP
rs1197817278 158 dbSNP
rs1000059805 161 dbSNP
rs1489546282 165 dbSNP
rs1238575721 167 dbSNP
rs1441372206 168 dbSNP
rs1048909253 169 dbSNP
rs905004044 170 dbSNP
rs569564003 179 dbSNP
rs1378740102 187 dbSNP
rs538141891 188 dbSNP
rs562701901 189 dbSNP
rs1407299451 190 dbSNP
rs1392007715 195 dbSNP
rs896606599 203 dbSNP
rs1455900285 208 dbSNP
rs956111456 218 dbSNP
rs574708385 219 dbSNP
rs1325900807 225 dbSNP
rs1019375371 246 dbSNP
rs964716915 248 dbSNP
rs1449520327 250 dbSNP
rs1306603205 251 dbSNP
rs975129887 255 dbSNP
rs1433718908 264 dbSNP
rs1334828350 267 dbSNP
rs142792213 269 dbSNP
rs1266702772 274 dbSNP
rs968252359 278 dbSNP
rs1354095958 283 dbSNP
rs1199499627 284 dbSNP
rs1212977185 295 dbSNP
rs1256573023 300 dbSNP
rs1235820784 316 dbSNP
rs1001049092 320 dbSNP
rs567937143 322 dbSNP
rs954321590 325 dbSNP
rs1331705205 332 dbSNP
rs768538556 333 dbSNP
rs1178353082 337 dbSNP
rs911629930 340 dbSNP
rs533893002 346 dbSNP
rs1196645541 349 dbSNP
rs1418729310 350 dbSNP
rs1431575720 352 dbSNP
rs1188270435 354 dbSNP
rs1179270609 355 dbSNP
rs1457500799 358 dbSNP
rs1236540182 364 dbSNP
rs971712180 369 dbSNP
rs1346124428 371 dbSNP
rs918951862 382 dbSNP
rs1231707428 383 dbSNP
rs1356390373 397 dbSNP
rs930317079 403 dbSNP
rs1370260315 407 dbSNP
rs868627398 408 dbSNP
rs553413524 409 dbSNP
rs1335750719 410 dbSNP
rs776408034 415 dbSNP
rs576518806 416 dbSNP
rs1401724352 417 dbSNP
rs1455293908 430 dbSNP
rs539292799 431 dbSNP
rs896548522 434 dbSNP
rs1329765846 444 dbSNP
rs1439130363 452 dbSNP
rs1236632656 461 dbSNP
rs1443423273 462 dbSNP
rs555916034 474 dbSNP
rs1255911841 481 dbSNP
rs1044440862 492 dbSNP
rs1199037642 497 dbSNP
rs1372074946 500 dbSNP
rs1396262382 507 dbSNP
rs1489571908 511 dbSNP
rs904474215 514 dbSNP
rs935863656 515 dbSNP
rs945485940 522 dbSNP
rs1350840623 523 dbSNP
rs1360667507 535 dbSNP
rs1052946996 543 dbSNP
rs1338183574 549 dbSNP
rs1232189826 553 dbSNP
rs1331973923 554 dbSNP
rs576318433 555 dbSNP
rs1361135015 563 dbSNP
rs1009002359 567 dbSNP
rs1297481910 586 dbSNP
rs558146956 588 dbSNP
rs903835130 590 dbSNP
rs1405881270 591 dbSNP
rs1165010994 598 dbSNP
rs1368068462 609 dbSNP
rs761514012 612 dbSNP
rs1196457676 614 dbSNP
rs1028954501 618 dbSNP
rs541723756 621 dbSNP
rs1216510280 622 dbSNP
rs373695402 622 dbSNP
rs567208274 622 dbSNP
rs996223889 625 dbSNP
rs1291418017 629 dbSNP
rs1019810191 631 dbSNP
rs1355244254 638 dbSNP
rs1028064196 642 dbSNP
rs1220290312 644 dbSNP
rs952302740 645 dbSNP
rs983637125 654 dbSNP
rs1015061561 657 dbSNP
rs1277565038 660 dbSNP
rs1398078273 667 dbSNP
rs966170124 671 dbSNP
rs1325637712 684 dbSNP
rs960838838 685 dbSNP
rs373204674 695 dbSNP
rs1390344424 701 dbSNP
rs1163032604 705 dbSNP
rs1467571455 705 dbSNP
rs1424788443 708 dbSNP
rs759750906 722 dbSNP
rs1187343902 731 dbSNP
rs1477139874 753 dbSNP
rs574696139 762 dbSNP
rs1199001816 764 dbSNP
rs917035008 765 dbSNP
rs951650756 768 dbSNP
rs948467993 770 dbSNP
rs926523916 773 dbSNP
rs979832625 794 dbSNP
rs1216519692 798 dbSNP
rs769380121 800 dbSNP
rs935916775 803 dbSNP
rs144504773 804 dbSNP
rs1437347673 809 dbSNP
rs1330587845 811 dbSNP
rs917733672 830 dbSNP
rs945224100 831 dbSNP
rs1401237672 838 dbSNP
rs1466932259 840 dbSNP
rs1304191131 852 dbSNP
rs1408541708 854 dbSNP
rs772713518 856 dbSNP
rs760431400 857 dbSNP
rs1173656981 858 dbSNP
rs1399675963 873 dbSNP
rs1413574726 874 dbSNP
rs944583018 877 dbSNP
rs1040601064 891 dbSNP
rs1298282398 893 dbSNP
rs900622364 896 dbSNP
rs936673135 897 dbSNP
rs1196574995 899 dbSNP
rs1294854827 904 dbSNP
rs1312528775 905 dbSNP
rs762410001 907 dbSNP
rs1235210859 914 dbSNP
rs1279322868 914 dbSNP
rs148425616 915 dbSNP
rs890023559 919 dbSNP
rs1008505324 924 dbSNP
rs1377977121 936 dbSNP
rs1330791925 949 dbSNP
rs1210168998 954 dbSNP
rs1361410202 959 dbSNP
rs1335529889 963 dbSNP
rs1020306841 975 dbSNP
rs1489343565 986 dbSNP
rs1027665357 998 dbSNP
rs887752492 1003 dbSNP
rs1005111390 1007 dbSNP
rs1015154754 1009 dbSNP
rs960932242 1010 dbSNP
rs994338287 1011 dbSNP
rs1013788010 1030 dbSNP
rs1268442352 1031 dbSNP
rs1440453518 1033 dbSNP
rs1287938380 1036 dbSNP
rs951808295 1037 dbSNP
rs1451823541 1038 dbSNP
rs1192404543 1039 dbSNP
rs1397637963 1039 dbSNP
rs35935361 1039 dbSNP
rs1006285759 1040 dbSNP
rs1172098078 1040 dbSNP
rs1213977568 1040 dbSNP
rs1217071262 1040 dbSNP
rs1228200369 1040 dbSNP
rs1233242127 1040 dbSNP
rs1260350605 1040 dbSNP
rs1264990412 1040 dbSNP
rs1280411663 1040 dbSNP
rs1313567489 1040 dbSNP
rs1323547622 1040 dbSNP
rs1353364210 1040 dbSNP
rs1354125541 1040 dbSNP
rs1439586313 1040 dbSNP
rs373693807 1040 dbSNP
rs1288198480 1042 dbSNP
rs1340355595 1043 dbSNP
rs1368246954 1043 dbSNP
rs1033374370 1049 dbSNP
rs1024221372 1050 dbSNP
rs1298931547 1054 dbSNP
rs1163478897 1056 dbSNP
rs1345919540 1056 dbSNP
rs1233820669 1057 dbSNP
rs1459750805 1057 dbSNP
rs141644858 1058 dbSNP
rs980229665 1060 dbSNP
rs1477359999 1062 dbSNP
rs1259446898 1068 dbSNP
rs992059957 1068 dbSNP
rs1489600217 1074 dbSNP
rs1266046808 1075 dbSNP
rs1241994298 1081 dbSNP
rs1489110242 1084 dbSNP
rs925626794 1086 dbSNP
rs1193230141 1087 dbSNP
rs1332847831 1087 dbSNP
rs1260531260 1089 dbSNP
rs957048896 1089 dbSNP
rs17069347 1091 dbSNP
rs913185017 1092 dbSNP
rs1454162432 1109 dbSNP
rs1158845113 1112 dbSNP
rs1401905452 1115 dbSNP
rs1381837583 1118 dbSNP
rs552840107 1128 dbSNP
rs1465066005 1129 dbSNP
rs1040207956 1131 dbSNP
rs921729033 1132 dbSNP
rs932100824 1134 dbSNP
rs1049113098 1135 dbSNP
rs1398408062 1137 dbSNP
rs150509040 1142 dbSNP
rs1435055247 1145 dbSNP
rs1350334050 1149 dbSNP
rs1193299096 1150 dbSNP
rs1459390827 1153 dbSNP
rs1199769340 1154 dbSNP
rs765385675 1154 dbSNP
rs1050174745 1166 dbSNP
rs911203766 1173 dbSNP
rs1235881817 1176 dbSNP
rs1447292163 1181 dbSNP
rs944051567 1200 dbSNP
rs1041267620 1211 dbSNP
rs1379422348 1211 dbSNP
rs1378422988 1213 dbSNP
rs1331465744 1220 dbSNP
rs765783732 1223 dbSNP
rs1304579891 1226 dbSNP
rs994336889 1231 dbSNP
rs1376901236 1235 dbSNP
rs1283654444 1237 dbSNP
rs1036314357 1241 dbSNP
rs1048619550 1244 dbSNP
rs1382189259 1245 dbSNP
rs1179346456 1246 dbSNP
rs1322468503 1248 dbSNP
rs190616445 1254 dbSNP
rs887514136 1258 dbSNP
rs1202755590 1263 dbSNP
rs752146729 1272 dbSNP
rs1483765387 1276 dbSNP
rs1280103291 1289 dbSNP
rs1231561280 1290 dbSNP
rs1355420980 1291 dbSNP
rs1171345964 1293 dbSNP
rs548554049 1297 dbSNP
rs577995801 1299 dbSNP
rs568059943 1300 dbSNP
rs1333535420 1302 dbSNP
rs1314739335 1303 dbSNP
rs1005941747 1304 dbSNP
rs1014216035 1305 dbSNP
rs1374576420 1307 dbSNP
rs1468301127 1329 dbSNP
rs543468308 1333 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 7101.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000368986.4 | 3UTR | UAUCUUCUUUUUUCUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
113 hsa-miR-3123 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058369 TBCEL tubulin folding cofactor E like 2 4
MIRT059816 EFNA1 ephrin A1 2 2
MIRT066850 TMEM19 transmembrane protein 19 2 2
MIRT071503 CALM1 calmodulin 1 2 6
MIRT073758 NUBP1 nucleotide binding protein 1 2 2
MIRT074324 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT094805 LMNB1 lamin B1 2 2
MIRT099173 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT099545 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT122643 E2F3 E2F transcription factor 3 2 2
MIRT180918 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 8
MIRT192844 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT224984 BAG4 BCL2 associated athanogene 4 2 2
MIRT246065 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT357085 PRRC1 proline rich coiled-coil 1 2 2
MIRT378170 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441636 KDM5A lysine demethylase 5A 2 2
MIRT441802 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT443019 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443445 SERPINB4 serpin family B member 4 2 2
MIRT443661 SERPINB3 serpin family B member 3 2 2
MIRT443776 STS steroid sulfatase 2 2
MIRT444663 TSPAN14 tetraspanin 14 2 2
MIRT444924 KIAA1522 KIAA1522 2 2
MIRT445378 FOXO1 forkhead box O1 2 2
MIRT447920 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT449202 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449713 TSPYL1 TSPY like 1 2 2
MIRT450403 TMEM47 transmembrane protein 47 2 2
MIRT450787 PAPOLG poly(A) polymerase gamma 2 2
MIRT451381 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT452507 WDR1 WD repeat domain 1 2 2
MIRT453264 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT454642 FAM83H family with sequence similarity 83 member H 2 2
MIRT455513 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT456709 LDB1 LIM domain binding 1 2 2
MIRT457231 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT459235 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT460553 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT461424 CTSL2 cathepsin V 2 3
MIRT462869 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT467178 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT469233 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT474125 LIPC lipase C, hepatic type 2 2
MIRT475509 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT478134 DHX36 DEAH-box helicase 36 2 2
MIRT481326 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT482003 AMOTL2 angiomotin like 2 2 2
MIRT482230 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483436 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483824 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT492051 TNFSF9 TNF superfamily member 9 2 2
MIRT494114 DLX6 distal-less homeobox 6 2 2
MIRT498882 ZNF12 zinc finger protein 12 2 10
MIRT499674 NPHP3 nephrocystin 3 2 2
MIRT506932 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT509461 ZNF587 zinc finger protein 587 2 6
MIRT510048 AKR1B10 aldo-keto reductase family 1 member B10 2 4
MIRT514807 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT515217 CRCP CGRP receptor component 2 2
MIRT515486 INCENP inner centromere protein 2 4
MIRT517765 ZNF366 zinc finger protein 366 2 4
MIRT518216 TRMT10B tRNA methyltransferase 10B 2 2
MIRT519602 ZNF805 zinc finger protein 805 2 2
MIRT523570 GGCX gamma-glutamyl carboxylase 2 4
MIRT525795 SOD2 superoxide dismutase 2 2 2
MIRT533055 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT534218 SLC37A3 solute carrier family 37 member 3 2 4
MIRT535633 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT535863 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT536344 LEFTY1 left-right determination factor 1 2 2
MIRT537923 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT543114 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT544717 ZNF529 zinc finger protein 529 2 2
MIRT544847 BASP1 brain abundant membrane attached signal protein 1 2 4
MIRT545536 ARF3 ADP ribosylation factor 3 2 2
MIRT547124 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548070 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548446 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548626 DAZAP1 DAZ associated protein 1 2 4
MIRT550259 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT551940 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552511 ZIK1 zinc finger protein interacting with K protein 1 2 4
MIRT554015 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT556647 KPNA2 karyopherin subunit alpha 2 2 4
MIRT559744 ACOX1 acyl-CoA oxidase 1 2 2
MIRT560393 TMEM254 transmembrane protein 254 2 2
MIRT562234 HMGB2 high mobility group box 2 2 2
MIRT563325 ORC4 origin recognition complex subunit 4 2 2
MIRT563697 RPS26 ribosomal protein S26 2 2
MIRT565066 USP25 ubiquitin specific peptidase 25 2 2
MIRT565349 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565624 SLC31A1 solute carrier family 31 member 1 2 2
MIRT566379 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT567575 FEM1C fem-1 homolog C 2 2
MIRT569383 DDX20 DEAD-box helicase 20 2 2
MIRT570037 FAM228A family with sequence similarity 228 member A 2 2
MIRT573269 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573912 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT620034 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT635606 ZWILCH zwilch kinetochore protein 2 2
MIRT644413 FRMD6 FERM domain containing 6 2 2
MIRT652528 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT656238 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT661373 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662530 PNPLA4 patatin like phospholipase domain containing 4 2 2
MIRT675551 MALL mal, T-cell differentiation protein like 2 2
MIRT693650 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT696348 SLC35D2 solute carrier family 35 member D2 2 2
MIRT705815 AKNA AT-hook transcription factor 2 2
MIRT707632 TARDBP TAR DNA binding protein 2 2
MIRT717902 COPS8 COP9 signalosome subunit 8 2 2
MIRT723626 SOBP sine oculis binding protein homolog 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3123 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3123 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3123 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)

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