miRTarBase - #MIRT535706


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pre-miRNA Information
pre-miRNA hsa-mir-215   
Genomic Coordinates chr1: 220117853 - 220117962
Synonyms MIRN215, miRNA215, mir-215, MIR215
Description Homo sapiens miR-215 stem-loop
Comment This human miRNA was predicted by computational methods using conservation with mouse and Fugu rubripes sequences .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-215-3p
Sequence 64| UCUGUCAUUUCUUUAGGCCAAUA |86
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs768393822 2 dbSNP
rs1345487830 5 dbSNP
rs757646667 7 dbSNP
rs754286532 11 dbSNP
rs749489380 17 dbSNP
rs1333471638 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NAA50   
Synonyms MAK3, NAT13, NAT13P, NAT5, NAT5P, SAN
Description N(alpha)-acetyltransferase 50, NatE catalytic subunit
Transcript NM_025146   
Expression
Putative miRNA Targets on NAA50
3'UTR of NAA50
(miRNA target sites are highlighted)		 
>NAA50|NM_025146|3'UTR
   1 ACAAATTACAAATGAACTTTCTTGCACTTGCTTGTCGCCAAATAAAAGAGAGGCCCATTGATTCCTCCCCCACCCCAACA
  81 CTTTTCTTTTAAAGCTTTTCTCCCTCCTTGTTCTTGTTTTTCTTTCTTCCTTTCCTTTTCTCTGAGAGTTTTAATACTTT
 161 CAAGGACTTTAAAAAAATAATCATGTTTGAATTGTTTTCTCTTATTTTTGTGAGGTGGTTTGAAGGAAGGACAAGGTAGA
 241 TCTGTTTAGTTTTGCAGTTGAAGTTAGATGGTCCTAAACATTTAATTGTCAAATAATTTCAAATTTAATGTCCTGCTTTC
 321 ACATTGAAGGGCAGAGCCTACAAAACATTGTATATTTCAAAAGACAAAAAGAAGCAGCAGCAGTATCTTGTTCTCTAATT
 401 CATAGACAAGTTGAGTGTGTTTGTGGTACTTTGGGTTTTTAAACACTTTGGGATACTAATCCCTAGACATTGCCTTCACT
 481 CCACCTTTAGTCCTTCTGAGCACTCTCTCGGGAGTTGGAACATTGTTATCCTTGTAAGAAATACTAAGCTTATGTTGATT
 561 TTTAAGTAATTATATCTTCTCTTCTTGCTGGTGGGTGGGGCAGTTTGGTTTAGTGTTATACTTTGGTCTAAGTATTTGAG
 641 TTAAACTGCTTTTTTGCTAATGAGTGGGCTGGTTGTTAGCAGGTTTGTTTTTCCTGCTGTTGATTGTTACTAGTGGCATT
 721 AACTTTTAGAATTTGGGCTGGTGAGATTAATTTTTTTTAATATCCCAGCTAGAGATATGGCCTTTAACTGACCTAAAGAG
 801 GTGTGTTGTGATTTAATTTTTTCCCGTTCCTTTTTCTTCAGTAAACCCAACAATAGTCTAACCTTAAAAATTGAGTTGAT
 881 GTCCTTATAGGTCACTACCCCTAAATAAACCTGAAGCAGGTGTTTTCTCTTGGACATACTAAAAAATACCTAAAAGGAAG
 961 CTTAGATGGGCTGTGACACAAAAAATTCAATTACTGTCATCTAATGCCAGCTGTTAAAAGTGTGGCCACTGAGCATTTGA
1041 TTTTATAGGAAAAAATAGTATTTTTGAGAATAACATAGCTGTGCTATTGCACATCTGTTGGAGGACATCCCAGATTTGCT
1121 TATACTCAGTGCCTGTGATATTGAGTTTAAGGATTTGAGGCAGGGGTAATTATTAAACATATTGCTTCTATTCTTGGAAA
1201 AATAGAAGTGTAAAATGTTAATAATACAAATGTCACTGTGACCTCCTCCACTGAGAGGACTGGTTTATGCCAGATCATTT
1281 TCCGGCACACACGGAGTGGCTTTGACAGATTGATAACTTTGTAAGATGGGAGACATCTGAAATATTCATGTTTTCCTTTT
1361 GTAGTCCCATCTCCACTATTTAGAAATGTTCTCAGACTTTAAAATAATGCACAGGGCTTGAGCTTTCTGTCATTTGACTT
1441 TAAAAGGAAGTTTCATTCATATTTATCCTCTTATGTAAAATTGCGGTATAAAGTCTCATTTCCAAATATGTTAAATGACA
1521 AAATTATTTTATAAAATGTTTATGCACACTTTATAACCTTAAGTTTTTATTTGAGAATGTGAAAGTACAAAGTGCAGTAG
1601 ACTTCAACAATCTTGAGTGCCAAGAATAATACAGAAAAAGAAGACAGTTGATGAATGAGTTTATAGGGTTCTAATCTTAA
1681 GATGGTAAAAATGTAGAAAGACCTTGCTGGTTTTTTGGGGGTATTCGTTTCTTAAACAATCCAAATCTAAGCTTAGAAGA
1761 AAAGTTTAGCGTTAAGCACCTTTATCTTCATGAATAAGCTTCAGCTTGCTCTTGGCAAGAGAAGAGTGCTTGAGTTACAG
1841 AAGGCATAAGTAGTTTGAAGAATGCAGCAGCCTTTTTGTAAACTTCCCAGATATCAAAATAGACTTTGATATATAAATGG
1921 TTTTCTGAGATGACACTGCCTCTATTTCTATAACCATTTCACCTGGACTATCTAATCAGTCCTATGAATGTATCCCTAAA
2001 TGTGGTTATTGAAAACCTAATAGCTGCCTCATGACAAGTACATGTTATTTAAGGAGGAAAAAATATTAAATTTTGAATTG
2081 AGTGTGTAGGCTCCCTATCATTATATATAGAGTTTCTTTTTCCACGGTAGTCAGTGACTTAACCTGAATTGTAAATGTTT
2161 GTAAAGGGTTAATTGTCCTACATCAAACTTAGTTAAATAATTCCATCCACTTATGGAGGAGGAGGAGAATGTGGAAGAGG
2241 TAAAAAGCTGGGCACAAGTTCATATGCCTATGAGTCAGTAAAGACTGAAGTAATGTCCTATGTTGAGCTGGTTATTTTGA
2321 TATATGATAATAATTATCTTTGAAGTAGAACAATTCTGTTAACTGGAAAATCACAGGATATATCCATCATATTTTTCAGG
2401 ACAGATAGTTTTTACTGTGGGGCAAATAGGTTAAAATTACACTATGTTAGTTGCATTTAGGTTTTAAAGCAAAGAATCTG
2481 TAGAGAAATCTATGCAATATATAGTTTGTCCAGATTAGCTTTCATTTGGGGAATGAAGTTCTGAAATATCTAAAGCAGTT
2561 TACTCATCAATTGAAAAGTCCTCCAAAAAGAGAACTATTGGGAAACCATGGTGTGGTGGTGGAAAAGAAAAGCTCCCTCA
2641 GTTTTTTGGAGGGAATAACTTAAAAAAATACTTAAATGGCTAAGTTTACTTGGTGCAGTTAAGAATTAAACTTGTCAATT
2721 TTAACATTGCTGTTACATCTGAAATAAACTTATGTGATGTTCTGGTAGTGATCTGTGATATCTGTAAATGTCAAAACTGT
2801 ATTGTTGAATTCTGCAGCCAGCAACCGTACATACTCATTGTGTAGTGTTTCCCTTACTGCTTTTATTTACTTTCACATTT
2881 AAGATCTAATTTTAAAATCATTAAAATAGGCCAAGTGTAATTAAGGCATCCTAATTCAGATCTTCTGTGACTTGCTAGGT
2961 ACAGTGCCCAATATCTACAATTCAGTTCCAATGAGAGGGAAAAAGTAAGATCCAAGGAACTGTCTTGCTGCTGTATTTTT
3041 AATGTAATTATTAGAAATACTTGACACTTTAGGCTGCAATCTAGTTAGTAATGTTTATTGGCTACAGACAACATATTCAG
3121 GTGTTTTGTTTTTCTTCCTTGTAAGGAAGGAGTACGGTAGTTCAATGAGTTGGGAATTGGCTTTTAAGCTTTTTATCAAA
3201 CATGAATTTAAGATTTTTTCTTTAACAGAATTCAGTATTTAATATTTCTAGTCAAAATTGTTATAATTAGATTTTTGCTT
3281 TTTTCATTTAAGAAGCAATGAGTGATCCTTGTCTAGTGTGTCTCAGTTATTACTGTAGTTTAAAACAACAAACAAGTATT
3361 ACCTTCCACAGTTCTGGATCAGGAATCTAGGAGCTGCTTAACTGGGTGGTTCTGTCTTGAGATCTCAGAAGGTTGCAGTC
3441 AAGCTGTTAGCCAGGACTGTACCATCTTGAAGCTTGACAAGGCTAGAGGAGCCATTTCCAAGATGTCTTGCTTACGTGGC
3521 TCTTGGGCTTCTGTTCCTCACTGTGTGGGTATCACACACAGTGCCTGATGCTCACGTGGCTCTTGGGCTTCAGTTCCTTG
3601 GGCACCAGTTGCCTGGTGGACAACTGGTATGTGGCTTCCCCTAGAGCAGGTGATATAAGAAAGTGAGCAGAAACCATACT
3681 TTTTTATGACGTAGCCTCAGGTGACATTATTTCTGCCATATTCCATGAGTCACACAGACCAACCATTGAATCAGCTTGGT
3761 ATAGTGTGGGAGGGGACTGCACAAGGATGTGAATACTGGGAGGTGGATATCATTGGGCCCTCTAGGAGACTGGCTATCAC
3841 TGCTCAGAGAAGATGCTGGGCTTCGTTGACTCCCAAGGTCAGGGTAGTTTTGGTTAGGTTGTGTTTTATTAGTCTCTAAA
3921 AGGAGTAGTTTTCTAAATGAGGGTTATAAAGCACTGCACTTTACAGTTATTCGGGATATAAAAGAAATAGTGGGTCTAAA
4001 GGCTGTGCTCTTGTGGTTGGGTTTTCAGTGGGGAGGGGAGACTAGTCTGTCTCAGACTGATGCTGTTCTCACTGATTTGA
4081 ATATTTCTGGGAAATTGGATACTACAGTCACAAATAGGAACAGTAAGCCTATAGAAGTTTTTCAGGGAGTAAATATTTTC
4161 TATGGCAGTGTCCTGAATTGGTTCTCCCTTGCAAGACTGAACTGTAGGAACTTAGTCCTAGTTTATGATACAGCCAAGTA
4241 ACATAGTCACATGGGAAAAAGAGCTTGAGTCAGATTTCTTAATGTGTGTTGTTAACTTGGTAGAACATTGAGAATTATTT
4321 AAGTCAGAGAACGATCTGTTACTGGGGCAGAAATTCTCAACCTTTTCAGTTCTCCAAAATTTAAGATACTTGATTTCTTA
4401 GGTAAAATGTTTTTGTTTTTGTTTTGGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGC
4481 TCACTGCAAACTCCGCCTCCCAGATTCAAGCAATTCTGCCTGAGCCTCCCAAGTAGCTGCGACTAGAAAGCGCATGCCAC
4561 CACGCCTGGCTAATTTTTTGTATTTTAGTAGAGATGGGGGTTTCACCGTGTTGCCCAGGCTGGTCTCAAACTCCTGAGCT
4641 TAGGCAATCCTCCTGGGGCAGCCTCCCAAAGTGCTAGGATTACAGGCGAGCCATGGCGCCTGGCCAGTAAAATGTTTTCT
4721 ATCTAGAATGAATCAAGGTATTTTCCTTGCTCAGTAGCTTCTAGAATAAGAAAAAAATAGCAGCAAGATCTGATTCAGAA
4801 ATAGTTGGGAGCAGAAAGTTAATATGAAGGAGTTGCTACTTGTTAACAGCCTAGAGTTGAGATCTAGAAGAATTATTACC
4881 TTTTTAAATTTGTGATGAAAGCTTAAATCCAGCATTTGGGAAGTTACTCTATTGGCTGAACTATTTTGGAGTTTGTAAGC
4961 TTTGTATTAGATATTCCTGATTTAACTGAAACTAATTTGCCACATAGCTTTAATTTCATCCCAGTTTTACTTGTTTTACT
5041 GTCCTCAAAAACTCAAGACATCTGAACTCAAAGGATCTAAGCAGTATAAATTAAAGCACATGTTGAATCACTGTAGCTTT
5121 CGTAGGACATCTGATTATAATGCTTTTCTTTGTTTCTTTGTCCATACTGAACTTGTCTAGTTTATCTTTGAGAAACATTT
5201 GCTAGTATCAAAAATCTTCTGTAAAGATTTGAACAATCTTGAATTCTCCTTGTCACTAGCCATCTCTTCCCCTAAAGTAT
5281 AATAAAACTGTCAGGTACTAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auaACCGGAUUUCUUUACUGUcu 5'
             |||::|   ||:||||||  
Target 5' aaaTGGTTTTCTGAGATGACAct 3'
 1915 - 1937 144.00 -15.30
2 
miRNA  3' auaACCGGAUUUCUUUACUGUcu 5'
             |||::|:|||:|| ||||  
Target 5' aggTGGTTTGAAGGAAGGACAag 3'
 213 - 235 132.00 -18.20
3 
miRNA  3' auaaccGGAUU-U-C--UUUACUGUcu 5'
                || || | |  ||||||||  
Target 5' tcatttCCAAATATGTTAAATGACAaa 3'
 1496 - 1522 131.00 -5.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30507780 10 COSMIC
COSN30511001 14 COSMIC
COSN31566095 20 COSMIC
COSN31514475 36 COSMIC
COSN30144832 43 COSMIC
COSN30180607 48 COSMIC
COSN15368556 50 COSMIC
COSN30495067 55 COSMIC
COSN31512304 69 COSMIC
COSN30510797 76 COSMIC
COSN31533454 81 COSMIC
COSN31524987 120 COSMIC
COSN31581576 140 COSMIC
COSN31482956 144 COSMIC
COSN31558706 199 COSMIC
COSN26167297 481 COSMIC
COSN31557387 717 COSMIC
COSN15048023 724 COSMIC
COSN31550757 1264 COSMIC
COSN7553151 1292 COSMIC
COSN31480640 1339 COSMIC
COSN31593713 1465 COSMIC
COSN31582608 1714 COSMIC
COSN31814441 1800 COSMIC
COSN32103532 1803 COSMIC
COSN24299925 1917 COSMIC
COSN23408735 2057 COSMIC
COSN31572440 2228 COSMIC
COSN1907476 2376 COSMIC
COSN31590785 2408 COSMIC
COSN25767648 2503 COSMIC
COSN30169461 2602 COSMIC
COSN31564620 2662 COSMIC
COSN31541095 2730 COSMIC
COSN28741431 2815 COSMIC
COSN8487925 2815 COSMIC
COSN9734228 3497 COSMIC
COSN29491687 4044 COSMIC
COSN6745056 4697 COSMIC
COSN1907475 4741 COSMIC
COSN27756807 4879 COSMIC
COSN20820464 5226 COSMIC
COSN24775264 5258 COSMIC
COSN14704015 5290 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769831240 2 dbSNP
rs906106275 3 dbSNP
rs759226514 4 dbSNP
rs1168312195 8 dbSNP
rs776526983 10 dbSNP
rs770446057 11 dbSNP
rs370663148 12 dbSNP
rs538959642 16 dbSNP
rs1485955716 17 dbSNP
rs772650092 21 dbSNP
rs771574003 25 dbSNP
rs1344612847 26 dbSNP
rs999780676 34 dbSNP
rs376595261 36 dbSNP
rs373190948 37 dbSNP
rs371430548 41 dbSNP
rs765852854 50 dbSNP
rs746445244 52 dbSNP
rs1357366013 53 dbSNP
rs1405011841 53 dbSNP
rs1399263984 54 dbSNP
rs1297980971 56 dbSNP
rs895575629 57 dbSNP
rs146114785 71 dbSNP
rs142991144 73 dbSNP
rs567244446 78 dbSNP
rs1214091872 82 dbSNP
rs865775449 84 dbSNP
rs15781 86 dbSNP
rs1488524391 94 dbSNP
rs1219038996 95 dbSNP
rs911102809 99 dbSNP
rs1451060957 100 dbSNP
rs1199693263 101 dbSNP
rs1379813200 106 dbSNP
rs530383482 107 dbSNP
rs985363485 114 dbSNP
rs1363558844 115 dbSNP
rs1381284237 116 dbSNP
rs952518965 129 dbSNP
rs137931216 145 dbSNP
rs1026761932 148 dbSNP
rs1385675468 159 dbSNP
rs113097575 170 dbSNP
rs562947608 171 dbSNP
rs550834840 172 dbSNP
rs1237843331 178 dbSNP
rs1363131271 179 dbSNP
rs1164986643 183 dbSNP
rs539248152 184 dbSNP
rs1210735634 191 dbSNP
rs1425167395 192 dbSNP
rs776675149 194 dbSNP
rs961480294 196 dbSNP
rs57150217 199 dbSNP
rs565606198 214 dbSNP
rs1239347882 232 dbSNP
rs1441876410 236 dbSNP
rs1002840195 241 dbSNP
rs866723525 244 dbSNP
rs1262248064 245 dbSNP
rs1457090355 247 dbSNP
rs905860445 249 dbSNP
rs1163532651 250 dbSNP
rs1198932659 253 dbSNP
rs774901005 253 dbSNP
rs1023197319 254 dbSNP
rs540467953 256 dbSNP
rs1489936139 257 dbSNP
rs1377578532 260 dbSNP
rs1271084506 263 dbSNP
rs186670193 264 dbSNP
rs1223366590 273 dbSNP
rs1320957202 274 dbSNP
rs749981064 279 dbSNP
rs561326272 291 dbSNP
rs1011846362 292 dbSNP
rs1198114994 295 dbSNP
rs1259201004 298 dbSNP
rs543147508 300 dbSNP
rs112433489 301 dbSNP
rs1053280805 317 dbSNP
rs1424801347 324 dbSNP
rs1308438584 329 dbSNP
rs866551964 331 dbSNP
rs1463558032 337 dbSNP
rs1169350285 340 dbSNP
rs934851089 341 dbSNP
rs1222499891 348 dbSNP
rs1343278602 350 dbSNP
rs1301064127 354 dbSNP
rs902228560 361 dbSNP
rs1304389600 362 dbSNP
rs1041196187 366 dbSNP
rs1405033407 371 dbSNP
rs1338730113 372 dbSNP
rs1395216841 378 dbSNP
rs1218019071 383 dbSNP
rs1296379894 385 dbSNP
rs1320165808 387 dbSNP
rs1208604129 390 dbSNP
rs1255956177 397 dbSNP
rs770979562 410 dbSNP
rs767030024 415 dbSNP
rs1259102861 421 dbSNP
rs1476635595 427 dbSNP
rs1192564237 428 dbSNP
rs149271381 432 dbSNP
rs931212731 435 dbSNP
rs1173815217 444 dbSNP
rs1358524088 449 dbSNP
rs575683935 452 dbSNP
rs1314495299 453 dbSNP
rs972530944 465 dbSNP
rs1399614657 467 dbSNP
rs1279127958 469 dbSNP
rs1175473343 472 dbSNP
rs1479558612 477 dbSNP
rs961509780 486 dbSNP
rs1035736943 498 dbSNP
rs1431728600 504 dbSNP
rs1313304780 505 dbSNP
rs981949715 509 dbSNP
rs1437297520 510 dbSNP
rs1248590174 511 dbSNP
rs552839712 521 dbSNP
rs761502451 524 dbSNP
rs1215399075 529 dbSNP
rs1481273978 538 dbSNP
rs1486531388 553 dbSNP
rs1255719522 554 dbSNP
rs1343634544 559 dbSNP
rs1022956710 562 dbSNP
rs1424295692 564 dbSNP
rs113308735 568 dbSNP
rs1011625595 570 dbSNP
rs1202205010 574 dbSNP
rs1175502564 579 dbSNP
rs1378223260 581 dbSNP
rs893386286 585 dbSNP
rs1320891124 587 dbSNP
rs1347195024 611 dbSNP
rs1031937328 619 dbSNP
rs998994584 624 dbSNP
rs1334632621 626 dbSNP
rs774030448 627 dbSNP
rs761181508 629 dbSNP
rs1304297479 630 dbSNP
rs112550966 631 dbSNP
rs1241352214 638 dbSNP
rs1284444101 654 dbSNP
rs1318359238 655 dbSNP
rs1219015701 661 dbSNP
rs539512001 662 dbSNP
rs1335766547 671 dbSNP
rs1040771172 672 dbSNP
rs1408095827 675 dbSNP
rs768431357 681 dbSNP
rs878876333 682 dbSNP
rs6438166 688 dbSNP
rs1236312042 691 dbSNP
rs765262649 691 dbSNP
rs943772095 693 dbSNP
rs1159030972 694 dbSNP
rs539072008 707 dbSNP
rs773609331 712 dbSNP
rs1049381262 720 dbSNP
rs775348921 722 dbSNP
rs931013682 723 dbSNP
rs919808013 726 dbSNP
rs1376824831 743 dbSNP
rs1447891179 744 dbSNP
rs1420160782 745 dbSNP
rs577839865 758 dbSNP
rs1226234941 759 dbSNP
rs1288750662 766 dbSNP
rs939844520 770 dbSNP
rs747018380 773 dbSNP
rs138358313 778 dbSNP
rs1462933267 779 dbSNP
rs981324085 780 dbSNP
rs1200655536 784 dbSNP
rs970546945 785 dbSNP
rs772085515 792 dbSNP
rs1471712802 800 dbSNP
rs534507815 801 dbSNP
rs150091303 803 dbSNP
rs570234850 808 dbSNP
rs1414823399 823 dbSNP
rs957362044 825 dbSNP
rs1399733540 826 dbSNP
rs58048794 830 dbSNP
rs1336222404 831 dbSNP
rs1331518455 842 dbSNP
rs1314272950 845 dbSNP
rs536771522 853 dbSNP
rs1031906085 856 dbSNP
rs569274569 870 dbSNP
rs1283182693 871 dbSNP
rs1355703213 877 dbSNP
rs1234825708 879 dbSNP
rs550945234 881 dbSNP
rs1275748121 884 dbSNP
rs1316817518 897 dbSNP
rs1450439358 901 dbSNP
rs1384682517 902 dbSNP
rs1337200549 912 dbSNP
rs1196276396 918 dbSNP
rs999526974 920 dbSNP
rs529097709 925 dbSNP
rs1209177233 929 dbSNP
rs1383112276 943 dbSNP
rs1160305563 949 dbSNP
rs1258404818 958 dbSNP
rs1476305013 962 dbSNP
rs748378032 967 dbSNP
rs1454385141 968 dbSNP
rs1191848028 970 dbSNP
rs1019512742 972 dbSNP
rs1007765504 975 dbSNP
rs1182252479 983 dbSNP
rs1170106216 986 dbSNP
rs889524959 988 dbSNP
rs1244077867 994 dbSNP
rs779336855 996 dbSNP
rs1335270667 1002 dbSNP
rs1192961634 1004 dbSNP
rs1049475415 1020 dbSNP
rs532970044 1024 dbSNP
rs755337157 1027 dbSNP
rs565430768 1034 dbSNP
rs1271799236 1035 dbSNP
rs193001068 1039 dbSNP
rs1218639789 1040 dbSNP
rs770154042 1045 dbSNP
rs114440342 1050 dbSNP
rs1214684846 1058 dbSNP
rs377686358 1060 dbSNP
rs948590849 1066 dbSNP
rs756670246 1075 dbSNP
rs748555776 1090 dbSNP
rs1447598247 1091 dbSNP
rs915959750 1092 dbSNP
rs561489644 1096 dbSNP
rs1376060412 1106 dbSNP
rs779462473 1114 dbSNP
rs1174875998 1119 dbSNP
rs1284529294 1122 dbSNP
rs1418290945 1123 dbSNP
rs1156409285 1125 dbSNP
rs957330696 1131 dbSNP
rs140867057 1141 dbSNP
rs1328906588 1152 dbSNP
rs1435644742 1153 dbSNP
rs1304121343 1160 dbSNP
rs1324850120 1171 dbSNP
rs1349732319 1178 dbSNP
rs1320518170 1182 dbSNP
rs1285497528 1192 dbSNP
rs1351669259 1196 dbSNP
rs924594737 1201 dbSNP
rs1383030234 1204 dbSNP
rs1265333045 1209 dbSNP
rs1365013731 1220 dbSNP
rs977472896 1225 dbSNP
rs1194766447 1236 dbSNP
rs966693501 1237 dbSNP
rs369346867 1243 dbSNP
rs376776576 1244 dbSNP
rs576825241 1245 dbSNP
rs1427067527 1250 dbSNP
rs1008105438 1258 dbSNP
rs1159986286 1267 dbSNP
rs1387910937 1274 dbSNP
rs953548855 1277 dbSNP
rs563803406 1280 dbSNP
rs1373103741 1281 dbSNP
rs1444560579 1282 dbSNP
rs545069120 1283 dbSNP
rs1028004267 1284 dbSNP
rs1336180557 1291 dbSNP
rs1241419779 1292 dbSNP
rs1355676428 1293 dbSNP
rs995228977 1293 dbSNP
rs898276909 1295 dbSNP
rs147649168 1296 dbSNP
rs1801388 1297 dbSNP
rs1474625556 1315 dbSNP
rs1244256393 1316 dbSNP
rs1456818199 1325 dbSNP
rs761377130 1330 dbSNP
rs1037084574 1345 dbSNP
rs1251656923 1346 dbSNP
rs1421289744 1352 dbSNP
rs1183483833 1359 dbSNP
rs62265553 1364 dbSNP
rs1366375487 1375 dbSNP
rs1488439470 1380 dbSNP
rs1003918794 1386 dbSNP
rs1267491430 1391 dbSNP
rs117298828 1392 dbSNP
rs1490800463 1400 dbSNP
rs1297581074 1401 dbSNP
rs1290524444 1403 dbSNP
rs907083745 1408 dbSNP
rs751195763 1412 dbSNP
rs1340104365 1423 dbSNP
rs1234199926 1431 dbSNP
rs1295185877 1433 dbSNP
rs1316193676 1435 dbSNP
rs1198532212 1440 dbSNP
rs769548235 1449 dbSNP
rs541318687 1454 dbSNP
rs1199107299 1458 dbSNP
rs948513283 1458 dbSNP
rs1345152112 1459 dbSNP
rs1474669104 1461 dbSNP
rs573472415 1463 dbSNP
rs1419352716 1467 dbSNP
rs1054319575 1472 dbSNP
rs1169599233 1473 dbSNP
rs1463273392 1474 dbSNP
rs146980042 1484 dbSNP
rs924759003 1485 dbSNP
rs1415600744 1486 dbSNP
rs775293881 1490 dbSNP
rs977817462 1497 dbSNP
rs1214082792 1500 dbSNP
rs1296847844 1509 dbSNP
rs141379034 1514 dbSNP
rs569388931 1519 dbSNP
rs147693467 1520 dbSNP
rs188283678 1527 dbSNP
rs1328769910 1533 dbSNP
rs539024657 1542 dbSNP
rs1259213211 1552 dbSNP
rs1422064293 1553 dbSNP
rs1486990522 1553 dbSNP
rs1168874836 1559 dbSNP
rs1185440501 1566 dbSNP
rs1477919148 1568 dbSNP
rs565672998 1584 dbSNP
rs1173921195 1585 dbSNP
rs953517502 1598 dbSNP
rs540544926 1602 dbSNP
rs1175707229 1619 dbSNP
rs115532727 1622 dbSNP
rs1430025200 1623 dbSNP
rs1289511776 1629 dbSNP
rs1246851410 1645 dbSNP
rs1203708362 1664 dbSNP
rs973563835 1671 dbSNP
rs183793414 1681 dbSNP
rs567996117 1687 dbSNP
rs962431296 1693 dbSNP
rs549578477 1700 dbSNP
rs1236977885 1710 dbSNP
rs531178936 1716 dbSNP
rs1004248100 1718 dbSNP
rs1199044518 1722 dbSNP
rs1242164845 1723 dbSNP
rs1323029443 1726 dbSNP
rs906888027 1727 dbSNP
rs563760372 1739 dbSNP
rs376110337 1740 dbSNP
rs1012827745 1742 dbSNP
rs1378326050 1743 dbSNP
rs1400318594 1745 dbSNP
rs1368352624 1751 dbSNP
rs557612604 1754 dbSNP
rs1456478170 1756 dbSNP
rs772179949 1762 dbSNP
rs1372370122 1764 dbSNP
rs149220995 1764 dbSNP
rs935853649 1764 dbSNP
rs1356821745 1765 dbSNP
rs748253046 1770 dbSNP
rs545491495 1771 dbSNP
rs1211292551 1784 dbSNP
rs1404436165 1784 dbSNP
rs1272398112 1790 dbSNP
rs1468855951 1791 dbSNP
rs1173808255 1794 dbSNP
rs533125399 1795 dbSNP
rs1236103455 1799 dbSNP
rs7648784 1800 dbSNP
rs1177951599 1805 dbSNP
rs1410458173 1815 dbSNP
rs540933721 1821 dbSNP
rs1164303398 1843 dbSNP
rs1395392334 1846 dbSNP
rs1463451865 1865 dbSNP
rs1329955280 1868 dbSNP
rs1443411808 1871 dbSNP
rs911908578 1872 dbSNP
rs1176158973 1875 dbSNP
rs1468480166 1880 dbSNP
rs1231145781 1887 dbSNP
rs986122326 1889 dbSNP
rs1334963918 1891 dbSNP
rs769034297 1893 dbSNP
rs920882433 1894 dbSNP
rs1234546799 1899 dbSNP
rs1436959109 1905 dbSNP
rs1204966112 1908 dbSNP
rs867311595 1908 dbSNP
rs1234464855 1910 dbSNP
rs973510148 1911 dbSNP
rs1187568273 1912 dbSNP
rs573583601 1916 dbSNP
rs1179246495 1917 dbSNP
rs555269690 1927 dbSNP
rs1460704775 1938 dbSNP
rs1261071548 1941 dbSNP
rs1476244133 1942 dbSNP
rs1169098145 1944 dbSNP
rs962241617 1948 dbSNP
rs1205778454 1951 dbSNP
rs1331283498 1963 dbSNP
rs1357844035 1970 dbSNP
rs1412513794 1974 dbSNP
rs1311926058 1975 dbSNP
rs1355489568 1978 dbSNP
rs1234610866 1981 dbSNP
rs1268281498 1984 dbSNP
rs1471651900 1985 dbSNP
rs1313016588 1993 dbSNP
rs1274836848 2000 dbSNP
rs1283596929 2005 dbSNP
rs1222143880 2008 dbSNP
rs142846139 2009 dbSNP
rs1210384410 2010 dbSNP
rs1310610713 2028 dbSNP
rs982567370 2030 dbSNP
rs1191118612 2033 dbSNP
rs1241665599 2036 dbSNP
rs971584051 2037 dbSNP
rs1023957123 2046 dbSNP
rs1423454108 2047 dbSNP
rs1434512989 2048 dbSNP
rs1012627704 2051 dbSNP
rs894390087 2061 dbSNP
rs1467226153 2062 dbSNP
rs1359387763 2064 dbSNP
rs1157667699 2066 dbSNP
rs1032936817 2071 dbSNP
rs999991414 2081 dbSNP
rs1271886390 2093 dbSNP
rs1345406340 2095 dbSNP
rs903034292 2097 dbSNP
rs1409612850 2098 dbSNP
rs1350317514 2105 dbSNP
rs546154646 2105 dbSNP
rs1042165401 2107 dbSNP
rs944794521 2110 dbSNP
rs890557137 2113 dbSNP
rs1050380849 2122 dbSNP
rs1185227824 2125 dbSNP
rs931993797 2126 dbSNP
rs920808892 2143 dbSNP
rs973645745 2156 dbSNP
rs575841973 2168 dbSNP
rs940827989 2171 dbSNP
rs1213988173 2172 dbSNP
rs1156491145 2196 dbSNP
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rs1286880096 2210 dbSNP
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rs1192348695 5089 dbSNP
rs1052951299 5098 dbSNP
rs189031916 5100 dbSNP
rs1282841307 5104 dbSNP
rs1353778896 5108 dbSNP
rs572112589 5115 dbSNP
rs944959021 5116 dbSNP
rs1490700943 5121 dbSNP
rs890704358 5122 dbSNP
rs72952659 5133 dbSNP
rs1438385668 5136 dbSNP
rs1258070771 5142 dbSNP
rs910161470 5167 dbSNP
rs1444196176 5170 dbSNP
rs932318818 5179 dbSNP
rs921046280 5186 dbSNP
rs1164480785 5195 dbSNP
rs979189106 5205 dbSNP
rs759904249 5211 dbSNP
rs1048522806 5215 dbSNP
rs930141178 5219 dbSNP
rs1167463393 5221 dbSNP
rs777000773 5221 dbSNP
rs1303315585 5225 dbSNP
rs1393684108 5226 dbSNP
rs1332562461 5238 dbSNP
rs946426680 5246 dbSNP
rs1387323252 5254 dbSNP
rs913740715 5257 dbSNP
rs1451387106 5260 dbSNP
rs369288519 5260 dbSNP
rs1375809796 5262 dbSNP
rs918989968 5265 dbSNP
rs1225526162 5269 dbSNP
rs530289012 5274 dbSNP
rs960945489 5279 dbSNP
rs1197519794 5283 dbSNP
rs1253762076 5302 dbSNP
rs747481561 5303 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 80218.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auaaccggauuucuuuACUGUCu 5'
                          |||||| 
Target 5' ------------gcuuUGACAGa 3'
 		1 - 11
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177603. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_5 PAR-CLIP data was present in ERX177615. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_5 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000240922.3 | 3UTR | GCUUUGACAGAUUGAUAACUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
96 hsa-miR-215-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058509 TEAD1 TEA domain transcription factor 1 2 2
MIRT445625 TMEM50A transmembrane protein 50A 2 2
MIRT449286 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT456702 LDB1 LIM domain binding 1 2 2
MIRT467723 SLC38A1 solute carrier family 38 member 1 2 2
MIRT474253 LATS2 large tumor suppressor kinase 2 2 2
MIRT481811 AP4E1 adaptor related protein complex 4 epsilon 1 subunit 2 2
MIRT491969 USP37 ubiquitin specific peptidase 37 2 2
MIRT513203 RFT1 RFT1 homolog 2 2
MIRT532737 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT535706 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT536138 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536463 KLF12 Kruppel like factor 12 2 4
MIRT552615 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554011 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT563259 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 2
MIRT571054 POLQ DNA polymerase theta 2 4
MIRT573556 TMEM120B transmembrane protein 120B 2 2
MIRT573772 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT575328 Fbxo6 F-box protein 6 2 2
MIRT575497 Sept3 septin 3 2 5
MIRT607051 IDS iduronate 2-sulfatase 2 2
MIRT607070 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607497 HEBP2 heme binding protein 2 2 2
MIRT607799 RHBDL2 rhomboid like 2 2 2
MIRT610832 COL9A1 collagen type IX alpha 1 chain 2 2
MIRT616853 DSG2 desmoglein 2 2 2
MIRT617154 C18orf42 A-kinase anchor inhibitor 1 2 2
MIRT620823 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT625698 OPTN optineurin 2 2
MIRT628082 KAT7 lysine acetyltransferase 7 2 2
MIRT633540 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634343 SGOL1 shugoshin 1 2 2
MIRT634605 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT636759 SLC16A5 solute carrier family 16 member 5 2 2
MIRT637044 SEPT3 septin 3 2 7
MIRT637213 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT639634 ZSCAN23 zinc finger and SCAN domain containing 23 2 2
MIRT640818 GPR107 G protein-coupled receptor 107 2 2
MIRT641033 PITPNB phosphatidylinositol transfer protein beta 2 2
MIRT641545 MOCOS molybdenum cofactor sulfurase 2 2
MIRT642091 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT645528 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT647017 ADCY2 adenylate cyclase 2 2 2
MIRT648044 FADS6 fatty acid desaturase 6 2 2
MIRT648514 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648869 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT656722 LMLN leishmanolysin like peptidase 2 2
MIRT658260 FAXC failed axon connections homolog 2 2
MIRT659063 DEPTOR DEP domain containing MTOR interacting protein 2 2
MIRT659364 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT660318 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT663345 ZNF74 zinc finger protein 74 2 2
MIRT663526 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663975 ZNF786 zinc finger protein 786 2 2
MIRT664354 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664473 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664975 TDRD1 tudor domain containing 1 2 2
MIRT665488 VPS53 VPS53, GARP complex subunit 2 2
MIRT667758 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT669552 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT670183 CCDC142 coiled-coil domain containing 142 2 2
MIRT671342 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671873 ZNF429 zinc finger protein 429 2 2
MIRT672018 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672068 KIAA0930 KIAA0930 2 2
MIRT672551 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT672849 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT672988 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT673088 AK1 adenylate kinase 1 2 2
MIRT673578 KDELC2 KDEL motif containing 2 2 2
MIRT674582 SLC35B4 solute carrier family 35 member B4 2 2
MIRT674999 STRN3 striatin 3 2 2
MIRT675596 ZNF106 zinc finger protein 106 2 2
MIRT675778 YIPF4 Yip1 domain family member 4 2 2
MIRT676029 C9orf69 transmembrane protein 250 2 2
MIRT679015 MTMR10 myotubularin related protein 10 2 2
MIRT679169 PSMB2 proteasome subunit beta 2 2 2
MIRT687413 NRIP1 nuclear receptor interacting protein 1 2 2
MIRT688038 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT691644 SLC43A3 solute carrier family 43 member 3 2 2
MIRT695630 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697562 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT699153 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT699683 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT702177 LYRM4 LYR motif containing 4 2 2
MIRT706217 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT711243 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT712343 NLN neurolysin 2 2
MIRT716574 HOPX HOP homeobox 2 2
MIRT717443 TENM1 teneurin transmembrane protein 1 2 2
MIRT717759 KCNRG potassium channel regulator 2 2
MIRT717945 TUBD1 tubulin delta 1 2 2
MIRT718343 PURA purine rich element binding protein A 2 2
MIRT718773 ABHD15 abhydrolase domain containing 15 2 2
MIRT737073 FOXM1 forkhead box M1 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-215 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-215 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-215 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-215 Doxorubicin approved 31703 Quantitative real-time PCR heart 22859947 2012 up-regulated
miR-215 Furan NULL 8029 Quantitative real-time PCR liver 22079235 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-215 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-215 Cisplatin 5460033 NSC119875 approved sensitive cell line (KYSE)
hsa-mir-215 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-215-3p Fluorouracil 3385 NSC19893 approved sensitive Low Colon Cancer cell line (HCT-116)
hsa-miR-215-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-215-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)

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