miRTarBase - #MIRT536103


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pre-miRNA Information
pre-miRNA hsa-mir-628   
Genomic Coordinates chr15: 55372940 - 55373034
Synonyms MIRN628, hsa-mir-628, MIR628
Description Homo sapiens miR-628 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-628-5p
Sequence 23| AUGCUGACAUAUUUACUAGAGG |44
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN15665015 15 COSMIC
COSN30467735 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs761527552 8 dbSNP
rs776423775 9 dbSNP
rs200771662 11 dbSNP
rs760615166 12 dbSNP
rs747172385 13 dbSNP
rs775387693 16 dbSNP
rs771606673 19 dbSNP
rs745373506 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MBNL1   
Synonyms EXP, MBNL
Description muscleblind like splicing regulator 1
Transcript NM_207297   
Other Transcripts NM_207292 , NM_207293 , NM_207294 , NM_207295 , NM_207296 , NM_021038   
Expression
Putative miRNA Targets on MBNL1
3'UTR of MBNL1
(miRNA target sites are highlighted)		 
>MBNL1|NM_207297|3'UTR
   1 CCACAAGTATGTTACCCAGATGTAGAATTTTCATCACTAAACAATCATGCTAAAGAGGAAAGGACAGTGTGCTTGGTTAG
  81 AGTAAAGGACGAGGTCATTAGCCATATTGTATATATCGTCAAGCAACACACACAAAAGTTCCTCAGCCACAAGACATCCA
 161 CATATTGCATGTTAACCAGAAGAAAAGACAACATTTTCCGGAAATCCACTGCACACTGTTGCCTATACACTTTGTACATT
 241 TAATTGATATTTGTGCTGAGGTGATATTCCTGTCTAAAAGAACAACATTGTCTTTCTTTTCTAGCACAGAGTTATGCATT
 321 CAAAGATGCATACCTAGTTAGTTTCCTATATATTCATGCCATCTTGAAAAGACAGACTATGGTGTAACCATGATTCTATT
 401 ATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAAATAAGTTTATTTCTTTCAAGGTTTACAAATAACAAAGG
 481 TGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGCGTGCATGCACAGTCATTTTTGTTTAAGAGTAATATTTTTAAT
 561 GTAATAGATTGTAAGACGTGGTGAGGGAGGGATCTGACAGAGATGAATGTGCCAAGCAAAACCACAACTGTGTATATTTT
 641 AAAGCACATCATGGCTTTAAGTACCATGTTGTTAAGGATTCTCATGAAGTGCCATAGACTGTACATCAAATTAGAGTATT
 721 ATTTCTTCAGTGTTATTGTTTTCAGAGCCACATTTTGTTGCATATTTGCTAGTACTAATCAGTCAAAGGGCACCATTCTT
 801 TTTTTTTTTTTTTGAAACCAAAGCTGTCTCAGAAATGGCCAATTTAACTTTACAGTAACAATAGACAGCACAACACAAAC
 881 TCTCTCAATACAGATAAACTCACACATACTGGAGATATATATATAATAGATATATATAAAATTATTTTAATGCATTGTAG
 961 TGTAATATTTATGCATACTATACTGTATAACATGTTATTCAAAAGGGATTGCCATTTCTGAGACACAGTAACAAAAAAAT
1041 GAGGAAATTATTTTGCTTCTATTTATAGCCTCTGTCAAAAGTCAAAAGACTATAAATGCTTTGCAAAAATGGTTTCACGT
1121 TTGCTTAAATGCTTCATCACAGTCACATTCAAAATAGTGACTCTAAACAAAGAAGAAAGCAGCACTGTCATCAGATGCAT
1201 GATAAACCAAAATATGAAAATGGGAAATGTTTAATTAACCTAGTAATTGGGTGGGTTAAGTACATGGGTGAATTTTATAT
1281 GTGATTTTTGTTTTGTTTTGTTTTGTTCAGATTAACTGCTTATAGCCTTAGAAAGCCTTTTACAAAATTAAAAAAAAAAT
1361 AGATGTGCATTCAGTTTTTAAGAATGGAATCATCCAAAGGAATTCCTTTTTTTGAGGTTTGGATGTTGCAGCTAGTAAAG
1441 GATATTTTTGCTCTGTTCAGCAGTTCTAAAAATTGCTGAAGTAGGGGCCAGGTCACTGGTAGTTATAGTATGGAATGGGA
1521 GAAGTGAAAGTTCAGTTATAGAACTTTCCATACTTCCAAGTTTACTGCAAGTTTTTATGCTTGAGAGAGATGCTTTCTAA
1601 TATAAGACTGATGTGTTGATTTTACTGATTGTACTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTGGAACC
1681 CATACCAATGTAATTTCAATCGTGTTAAGAAAGTAATGGTGACTTCACATGTTATTGTAGTTAGTTACATTATAGAATAT
1761 TACTTATTTTTCTTGTTAAAATGTAGTTTTTCATTTCCTACATTTATTAGATTTTCATTTTCTATTAACAATTGAATACC
1841 ATTTCAGTTTATAGACTTGTTTTATTAGATTTTACCAATGAATTTTTCAAAATACAAAAAAAAGTAGTTTTTCCTTCATA
1921 ACATACTCAGTTTTGAATTACATGTAGTGTCACATGAATATTCGTATTGTTAACTAAATGATTTATATTTTACTGATTTA
2001 ATATTACAGTGTAAGAATGTCAGTCATTGTTAGTTCTTGTCTAGTTTTCATTAAAAGAACAAAGATCTTTTATATGGATA
2081 TCTTATAAATATATAATCATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGCAACAATCCTGGCAGACAATTGAGTAATA
2161 TTTTGATGATTTATTTTGTTTGTAATTAGTTATTATAAGAAGATCTAGATCCTAGATATTAGAATAAAATTTATTTTCTA
2241 CTGTATCCATTTCAAATGTTAAAATATTGTTTAATATTTTTGAAATCCCTGAGTATCAGGCCTTGTTATAAATAAGCTGC
2321 ATAATCAATAAATAGAACAAGGGACTTTTTGTTGATAATCCAAATACTCAAAGTTTACGTAATGAAAATTATAGCGTGTG
2401 TGCAAACTCTTGAGGGTTGATTATGCTGCAATTTAGCATGTTGGAACGTCTAGGGAGAAGGTTGACTTTTTGCACTTCTG
2481 TATATAGTCAAAAGAGAGAAACCTGTATAATAGTAAGATCTTATTTTGAATAAAAACGTCTATAATTACAAGGAGTTTTG
2561 TTAAGGCTAATACAATGACAGACTGAGCAAAATTGCTTGCAAAAGTGGCACAGAGTTAGCACTCCATACCCCTTCAAACA
2641 TGTTGCTTTGCTTTCTTGTGGACAGCTTGTAGTTTGCCAGGATTTTTTCAGCTGGAAAGATACGCCATCCTTTCAAACCC
2721 TCATGACTGACAAAAACTCCATGGGGCCAAATCTGCCTGAAGATCATTACCAAAAATAGCAGGTACTTCTACCATTAAGG
2801 TGAAATCATGGATCAGATATTCCTTACATTTTTCAAAACTACTGCATGTTTAAAACTTCAACAAAAAAAGAGAGAAAGAA
2881 CTATACTAAGAACATATATTATTCAGATCAGTTTCTGCCAATTTCAGTGGTTTATTGTTCACAAAAAAATCTTCAAAACA
2961 AGTATTGACTTTCACAAAATTTAAATCATAAACAGGCAAACCAAACAGCACACTGTAGCTATAGTTGTTATGTGATTGTT
3041 TTTTAATTGCTGTAGGATCCTGTTCTTTCAGCAGGTGAAAAATAAAACGCAGTTCAAATTTCATGGTTTTAATTTTCAAC
3121 TCAGAAGCACTCAAAAATGCAAAATGTGATAATGGGCACTTGTTTAAAAGAATTAGTGTATCCAGCCTTCACTCCAGCTG
3201 GTTAAAAATGTTGCACTTATCAGCAACCCTACCACTTTCATCTGCTGAAAGGACAAATGTGCTTGGTTTTACTATTATGT
3281 AATCACAACTTACTTTCTGCTTGTAGTTGCTTAAAATTATGTATTTTGTCTTGGGCTGCAATTTGTTTTATGCTTATTTT
3361 ATTATTACTGCAGTAGTTGACTTTGCTGTATGGAAAAATAAAGTGAAATTGCCCTAATAAAACTTCTCTTTCTTAAGTAA
3441 AAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggAGAUCAUUUAUA-CAG-UCGUa 5'
            | | ||| |||| ||| |||| 
Target 5' caTATTGTATATATCGTCAAGCAa 3'
 103 - 126 136.00 -8.20
2 
miRNA  3' ggagauCAUUUAUACAGUC-GUa 5'
                ||||: ||||||| || 
Target 5' tacagtGTAAGAATGTCAGTCAt 3'
 2005 - 2027 136.00 -13.10
3 
miRNA  3' ggagAUCAUUUAUACAGUCGUa 5'
              |:| | | | ||:|||| 
Target 5' aaagTGGCACAGA-GTTAGCAc 3'
 2602 - 2622 133.00 -7.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM9226981 15 COSMIC
COSM1484752 18 COSMIC
COSM1040081 20 COSMIC
COSN31581410 29 COSMIC
COSN8488503 73 COSMIC
COSN30579917 93 COSMIC
COSN28872803 129 COSMIC
COSN1269971 149 COSMIC
COSN28711061 214 COSMIC
COSN21672268 394 COSMIC
COSN27278789 582 COSMIC
COSN27514357 617 COSMIC
COSN29370510 880 COSMIC
COSN21832502 971 COSMIC
COSN4999043 1174 COSMIC
COSN17421345 1323 COSMIC
COSN21244019 1374 COSMIC
COSN1921806 1397 COSMIC
COSN7826276 1791 COSMIC
COSN7623720 1888 COSMIC
COSN16227281 3325 COSMIC
COSN8363119 3584 COSMIC
COSN26566648 3630 COSMIC
COSN31547016 3680 COSMIC
COSN30544107 3694 COSMIC
COSN26465038 3721 COSMIC
COSN31600946 3722 COSMIC
COSN20090922 3838 COSMIC
COSN20099275 3853 COSMIC
COSN27209013 3853 COSMIC
COSN31563162 3965 COSMIC
COSN31569669 4078 COSMIC
COSN31588028 4079 COSMIC
COSN6736598 4159 COSMIC
COSN31537452 4244 COSMIC
COSN31570132 4302 COSMIC
COSN31607514 4581 COSMIC
COSN31522555 4674 COSMIC
COSN31555944 4683 COSMIC
COSN31557589 4713 COSMIC
COSN21187936 4720 COSMIC
COSN31515849 4732 COSMIC
COSN7623721 4880 COSMIC
COSN23254970 4943 COSMIC
COSN31568707 4944 COSMIC
COSN31589467 4980 COSMIC
COSN31515842 5097 COSMIC
COSN31548597 5104 COSMIC
COSN5523974 5348 COSMIC
COSN31602863 5458 COSMIC
COSN28099845 5580 COSMIC
COSN2522452 5654 COSMIC
COSN31482640 5722 COSMIC
COSN20090923 5784 COSMIC
COSN21812884 5998 COSMIC
COSN31487704 6129 COSMIC
COSN31569662 6176 COSMIC
COSN15662935 6282 COSMIC
COSN26679180 6301 COSMIC
rs17437560 3239 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs549964377 1 dbSNP
rs1026272758 3 dbSNP
rs1223881425 4 dbSNP
rs1395383116 7 dbSNP
rs1229116592 10 dbSNP
rs1314740488 13 dbSNP
rs1476984748 16 dbSNP
rs368337000 17 dbSNP
rs775254619 18 dbSNP
rs760876831 20 dbSNP
rs768930977 23 dbSNP
rs569885599 27 dbSNP
rs951488808 37 dbSNP
rs1196589352 39 dbSNP
rs761980571 40 dbSNP
rs547185626 52 dbSNP
rs751013661 64 dbSNP
rs1200598419 67 dbSNP
rs763538746 68 dbSNP
rs766916318 69 dbSNP
rs751956967 70 dbSNP
rs1408852405 71 dbSNP
rs755238844 73 dbSNP
rs535788425 75 dbSNP
rs373865475 85 dbSNP
rs927905524 85 dbSNP
rs980650149 85 dbSNP
rs1372318734 100 dbSNP
rs1330318859 101 dbSNP
rs112083706 106 dbSNP
rs1330818836 110 dbSNP
rs112954884 115 dbSNP
rs75748187 128 dbSNP
rs772749065 129 dbSNP
rs535064646 133 dbSNP
rs1424274592 140 dbSNP
rs913751500 140 dbSNP
rs1170592606 151 dbSNP
rs965132854 165 dbSNP
rs946448858 168 dbSNP
rs1043472215 169 dbSNP
rs1237517012 171 dbSNP
rs1456042302 179 dbSNP
rs976299247 203 dbSNP
rs557858471 212 dbSNP
rs910192984 213 dbSNP
rs1276995287 221 dbSNP
rs1221270428 233 dbSNP
rs773692277 234 dbSNP
rs934946681 238 dbSNP
rs1253876574 251 dbSNP
rs1309119484 255 dbSNP
rs943048600 258 dbSNP
rs1053296323 261 dbSNP
rs914793661 263 dbSNP
rs901423933 269 dbSNP
rs578153838 271 dbSNP
rs947069391 272 dbSNP
rs35639786 284 dbSNP
rs182330282 299 dbSNP
rs532787385 302 dbSNP
rs1395651995 304 dbSNP
rs1416341471 306 dbSNP
rs1176884457 313 dbSNP
rs1409604522 321 dbSNP
rs543893307 324 dbSNP
rs892669 326 dbSNP
rs1213506938 327 dbSNP
rs1460518498 332 dbSNP
rs1310462681 333 dbSNP
rs1351610199 334 dbSNP
rs1404778635 336 dbSNP
rs1486164946 336 dbSNP
rs1285942592 337 dbSNP
rs1281723474 340 dbSNP
rs1365093991 341 dbSNP
rs1398651120 342 dbSNP
rs1325104420 346 dbSNP
rs1220532969 347 dbSNP
rs1350038376 348 dbSNP
rs1278870961 350 dbSNP
rs1238682580 352 dbSNP
rs1306478347 354 dbSNP
rs1201784861 355 dbSNP
rs1276745302 356 dbSNP
rs1483313110 357 dbSNP
rs1198456768 358 dbSNP
rs1266423922 360 dbSNP
rs1479136556 362 dbSNP
rs1003022399 364 dbSNP
rs1375776760 364 dbSNP
rs1297345443 365 dbSNP
rs573847477 366 dbSNP
rs1419069141 372 dbSNP
rs113536933 377 dbSNP
rs1346868244 379 dbSNP
rs1159220169 381 dbSNP
rs1056998522 382 dbSNP
rs896989706 389 dbSNP
rs542433761 390 dbSNP
rs1170543068 394 dbSNP
rs1026911038 395 dbSNP
rs888335136 400 dbSNP
rs1487165197 405 dbSNP
rs750917965 410 dbSNP
rs868495961 410 dbSNP
rs1319938066 412 dbSNP
rs1424542388 412 dbSNP
rs1301686535 413 dbSNP
rs186944633 414 dbSNP
rs1437618705 415 dbSNP
rs960641772 426 dbSNP
rs746288171 428 dbSNP
rs964850036 432 dbSNP
rs1456979004 453 dbSNP
rs976563691 456 dbSNP
rs1347669262 462 dbSNP
rs1166460204 463 dbSNP
rs191407652 466 dbSNP
rs1350404832 471 dbSNP
rs772573574 472 dbSNP
rs956217163 479 dbSNP
rs1191982263 480 dbSNP
rs528362746 483 dbSNP
rs914846105 491 dbSNP
rs960893508 498 dbSNP
rs967870101 499 dbSNP
rs569379893 503 dbSNP
rs1214370145 513 dbSNP
rs1222358803 524 dbSNP
rs1317539215 527 dbSNP
rs780428714 528 dbSNP
rs979820983 530 dbSNP
rs1224971911 531 dbSNP
rs1327918230 537 dbSNP
rs367736810 541 dbSNP
rs1296009853 544 dbSNP
rs1386207252 546 dbSNP
rs1143838 554 dbSNP
rs1299126907 555 dbSNP
rs1365367072 555 dbSNP
rs926944615 560 dbSNP
rs1399134088 564 dbSNP
rs1168015487 566 dbSNP
rs397991401 566 dbSNP
rs5853586 566 dbSNP
rs748174461 566 dbSNP
rs759012026 566 dbSNP
rs1431992517 567 dbSNP
rs1255384723 568 dbSNP
rs1457320268 577 dbSNP
rs1221577862 578 dbSNP
rs1287625737 580 dbSNP
rs1197836011 581 dbSNP
rs1251713983 582 dbSNP
rs4992533 582 dbSNP
rs371213911 583 dbSNP
rs982604638 587 dbSNP
rs1241797081 591 dbSNP
rs1474523211 592 dbSNP
rs1190633146 593 dbSNP
rs1390794716 595 dbSNP
rs1375446031 597 dbSNP
rs1328676775 598 dbSNP
rs1444579834 604 dbSNP
rs1392843333 605 dbSNP
rs1396736478 605 dbSNP
rs1057287668 607 dbSNP
rs4068736 614 dbSNP
rs777076256 614 dbSNP
rs1464819585 615 dbSNP
rs202057374 615 dbSNP
rs368958739 616 dbSNP
rs67325776 617 dbSNP
rs2019689 618 dbSNP
rs370049783 618 dbSNP
rs1174748048 622 dbSNP
rs1439606457 630 dbSNP
rs1378616248 631 dbSNP
rs1184041571 633 dbSNP
rs17437475 633 dbSNP
rs888388787 648 dbSNP
rs1255674878 660 dbSNP
rs1416545693 668 dbSNP
rs550225424 670 dbSNP
rs1318011856 671 dbSNP
rs1484529956 672 dbSNP
rs567008084 677 dbSNP
rs943163118 678 dbSNP
rs1017636890 679 dbSNP
rs536074962 682 dbSNP
rs1277309577 691 dbSNP
rs1240498240 692 dbSNP
rs1321987294 697 dbSNP
rs934243051 705 dbSNP
rs1047781427 707 dbSNP
rs1413333020 708 dbSNP
rs1377707897 716 dbSNP
rs997486297 717 dbSNP
rs1365365926 721 dbSNP
rs549308683 724 dbSNP
rs776328020 728 dbSNP
rs956102827 729 dbSNP
rs566404133 733 dbSNP
rs1021738293 734 dbSNP
rs1358353994 741 dbSNP
rs1368122674 743 dbSNP
rs1185619835 750 dbSNP
rs941512204 751 dbSNP
rs892667 762 dbSNP
rs1463719879 768 dbSNP
rs980759498 769 dbSNP
rs1282010650 771 dbSNP
rs905269239 776 dbSNP
rs927529475 782 dbSNP
rs1283070682 785 dbSNP
rs938355429 786 dbSNP
rs1460956263 794 dbSNP
rs1399729734 797 dbSNP
rs1185476897 803 dbSNP
rs992464264 807 dbSNP
rs1320776413 808 dbSNP
rs377171225 812 dbSNP
rs571643264 815 dbSNP
rs929693666 817 dbSNP
rs1009455189 820 dbSNP
rs1406166004 824 dbSNP
rs1459145063 826 dbSNP
rs1188424733 828 dbSNP
rs1021301565 831 dbSNP
rs1161011441 835 dbSNP
rs1048283592 836 dbSNP
rs1240294822 839 dbSNP
rs1195312197 857 dbSNP
rs1447507416 861 dbSNP
rs1288574845 863 dbSNP
rs1211252038 867 dbSNP
rs77203390 869 dbSNP
rs1273382781 870 dbSNP
rs537560219 874 dbSNP
rs967819007 875 dbSNP
rs1451343450 880 dbSNP
rs888267768 883 dbSNP
rs1272276269 884 dbSNP
rs1331570734 895 dbSNP
rs1342229834 905 dbSNP
rs1363076585 906 dbSNP
rs942671228 907 dbSNP
rs557516429 909 dbSNP
rs1040028469 910 dbSNP
rs1443136469 918 dbSNP
rs765389937 921 dbSNP
rs1395493549 937 dbSNP
rs1326887119 939 dbSNP
rs1475728064 951 dbSNP
rs35913796 951 dbSNP
rs76649588 951 dbSNP
rs77679448 952 dbSNP
rs77426914 953 dbSNP
rs1191239938 957 dbSNP
rs139376380 966 dbSNP
rs1198829674 967 dbSNP
rs1435716556 975 dbSNP
rs976262088 979 dbSNP
rs552848033 982 dbSNP
rs1051699476 991 dbSNP
rs1344957608 998 dbSNP
rs1301788777 999 dbSNP
rs1236600576 1015 dbSNP
rs891912799 1020 dbSNP
rs928978077 1022 dbSNP
rs983015070 1026 dbSNP
rs1181791300 1029 dbSNP
rs1330662246 1036 dbSNP
rs1010268664 1044 dbSNP
rs908792147 1045 dbSNP
rs941626723 1062 dbSNP
rs1250243237 1064 dbSNP
rs1021787759 1068 dbSNP
rs1395233797 1074 dbSNP
rs969295636 1075 dbSNP
rs1001678285 1081 dbSNP
rs372572802 1086 dbSNP
rs573095608 1102 dbSNP
rs187908986 1124 dbSNP
rs1442142323 1134 dbSNP
rs1278611572 1136 dbSNP
rs1213723611 1148 dbSNP
rs1468931090 1152 dbSNP
rs1222095879 1154 dbSNP
rs1375838123 1154 dbSNP
rs1280292064 1167 dbSNP
rs1442680664 1169 dbSNP
rs896450060 1174 dbSNP
rs1375971733 1175 dbSNP
rs1403651105 1175 dbSNP
rs1157765851 1176 dbSNP
rs868406652 1177 dbSNP
rs1328182623 1179 dbSNP
rs1020952321 1180 dbSNP
rs1255893300 1182 dbSNP
rs1348527893 1185 dbSNP
rs903774618 1188 dbSNP
rs193167566 1189 dbSNP
rs867772705 1193 dbSNP
rs61071590 1202 dbSNP
rs1285030709 1208 dbSNP
rs918243089 1219 dbSNP
rs951141135 1220 dbSNP
rs549419098 1221 dbSNP
rs983867363 1221 dbSNP
rs552879896 1222 dbSNP
rs942534394 1226 dbSNP
rs975829345 1227 dbSNP
rs543785543 1232 dbSNP
rs1345886683 1233 dbSNP
rs1030496881 1235 dbSNP
rs1195273198 1236 dbSNP
rs59541253 1237 dbSNP
rs1460639327 1238 dbSNP
rs1039517558 1239 dbSNP
rs1415145252 1243 dbSNP
rs922535734 1245 dbSNP
rs1475700932 1252 dbSNP
rs933899147 1254 dbSNP
rs529744788 1256 dbSNP
rs976139126 1260 dbSNP
rs190658938 1263 dbSNP
rs962936024 1264 dbSNP
rs1487135400 1268 dbSNP
rs921944847 1269 dbSNP
rs577402840 1280 dbSNP
rs370108951 1281 dbSNP
rs1332975982 1283 dbSNP
rs1043131740 1288 dbSNP
rs1196381050 1289 dbSNP
rs373208923 1293 dbSNP
rs1478095217 1295 dbSNP
rs1335295862 1299 dbSNP
rs1294552398 1309 dbSNP
rs1288958334 1310 dbSNP
rs1412303631 1310 dbSNP
rs931961658 1310 dbSNP
rs77357587 1311 dbSNP
rs904579443 1313 dbSNP
rs1002127264 1316 dbSNP
rs1166587617 1318 dbSNP
rs1461618124 1319 dbSNP
rs1368661522 1320 dbSNP
rs552070682 1321 dbSNP
rs757162999 1321 dbSNP
rs1056514938 1322 dbSNP
rs11919982 1322 dbSNP
rs1214601305 1322 dbSNP
rs1255145810 1322 dbSNP
rs1420771002 1322 dbSNP
rs1431476350 1323 dbSNP
rs1250610053 1324 dbSNP
rs960596398 1325 dbSNP
rs1224897669 1326 dbSNP
rs1308422368 1330 dbSNP
rs1014504448 1332 dbSNP
rs1298194293 1332 dbSNP
rs78232708 1333 dbSNP
rs571956971 1334 dbSNP
rs200711742 1335 dbSNP
rs1331886340 1340 dbSNP
rs1441264035 1342 dbSNP
rs1395301931 1344 dbSNP
rs1296820867 1351 dbSNP
rs983751575 1352 dbSNP
rs1374173085 1358 dbSNP
rs557956009 1359 dbSNP
rs909643437 1364 dbSNP
rs112266737 1366 dbSNP
rs1194328691 1376 dbSNP
rs1206433637 1381 dbSNP
rs1291658320 1385 dbSNP
rs1248607434 1398 dbSNP
rs903887677 1402 dbSNP
rs1000715424 1404 dbSNP
rs557381655 1415 dbSNP
rs768797089 1418 dbSNP
rs567756073 1421 dbSNP
rs1305065040 1425 dbSNP
rs1233265190 1432 dbSNP
rs1451758286 1432 dbSNP
rs1187424794 1438 dbSNP
rs1304359345 1453 dbSNP
rs922455751 1454 dbSNP
rs900300187 1457 dbSNP
rs546765466 1459 dbSNP
rs1387735564 1465 dbSNP
rs997756588 1468 dbSNP
rs1312652781 1486 dbSNP
rs1377740727 1502 dbSNP
rs1433469414 1502 dbSNP
rs1030199268 1517 dbSNP
rs1453098795 1535 dbSNP
rs1184311009 1539 dbSNP
rs536302557 1545 dbSNP
rs950505468 1552 dbSNP
rs1252354547 1564 dbSNP
rs762859212 1566 dbSNP
rs766275326 1572 dbSNP
rs1282294452 1578 dbSNP
rs146649808 1580 dbSNP
rs1349271187 1581 dbSNP
rs571151708 1600 dbSNP
rs1367815418 1602 dbSNP
rs933948429 1604 dbSNP
rs1350720870 1631 dbSNP
rs1052307448 1634 dbSNP
rs1295011476 1640 dbSNP
rs913788459 1643 dbSNP
rs1391727924 1665 dbSNP
rs1413252215 1677 dbSNP
rs1357952508 1679 dbSNP
rs376293259 1681 dbSNP
rs1400615302 1686 dbSNP
rs181758936 1702 dbSNP
rs1160367540 1708 dbSNP
rs904628926 1711 dbSNP
rs1163950368 1712 dbSNP
rs1474078800 1713 dbSNP
rs781162145 1714 dbSNP
rs867001442 1720 dbSNP
rs1446320314 1723 dbSNP
rs1259131395 1725 dbSNP
rs1206329122 1734 dbSNP
rs895981739 1735 dbSNP
rs1315043150 1741 dbSNP
rs1329439890 1741 dbSNP
rs945435775 1748 dbSNP
rs1014390102 1750 dbSNP
rs538870759 1754 dbSNP
rs1231871197 1759 dbSNP
rs1025908140 1772 dbSNP
rs887326552 1775 dbSNP
rs1247455032 1778 dbSNP
rs1266365424 1780 dbSNP
rs558453526 1782 dbSNP
rs1356643639 1785 dbSNP
rs1042470649 1787 dbSNP
rs796296679 1790 dbSNP
rs751486684 1799 dbSNP
rs1207773878 1810 dbSNP
rs1245786496 1813 dbSNP
rs1465916737 1816 dbSNP
rs1435818157 1828 dbSNP
rs925258270 1831 dbSNP
rs1016589396 1840 dbSNP
rs964170301 1846 dbSNP
rs1463186733 1848 dbSNP
rs1415738283 1869 dbSNP
rs975189406 1873 dbSNP
rs575180366 1875 dbSNP
rs1188626634 1882 dbSNP
rs760761427 1891 dbSNP
rs1371204712 1894 dbSNP
rs750211119 1898 dbSNP
rs1464918691 1906 dbSNP
rs755937931 1914 dbSNP
rs1211484267 1923 dbSNP
rs1421914085 1926 dbSNP
rs1039049106 1930 dbSNP
rs1469531491 1935 dbSNP
rs1291111767 1936 dbSNP
rs1214291419 1937 dbSNP
rs1166690872 1944 dbSNP
rs16864298 1946 dbSNP
rs560680968 1949 dbSNP
rs1272391922 1961 dbSNP
rs1229255235 1962 dbSNP
rs913840907 1967 dbSNP
rs1323932229 1969 dbSNP
rs946617305 1971 dbSNP
rs529802577 1972 dbSNP
rs886290402 1979 dbSNP
rs140021080 1983 dbSNP
rs74702349 1986 dbSNP
rs1394281979 1998 dbSNP
rs1170466892 2002 dbSNP
rs559914443 2004 dbSNP
rs1391098320 2007 dbSNP
rs1394021904 2010 dbSNP
rs1435976172 2017 dbSNP
rs369623621 2020 dbSNP
rs779510720 2021 dbSNP
rs925968890 2030 dbSNP
rs962997858 2039 dbSNP
rs937462270 2042 dbSNP
rs1055883855 2047 dbSNP
rs1275523214 2053 dbSNP
rs761786074 2065 dbSNP
rs1347780320 2068 dbSNP
rs1314041837 2082 dbSNP
rs1236505956 2090 dbSNP
rs1368614322 2091 dbSNP
rs1316739550 2094 dbSNP
rs575304807 2097 dbSNP
rs1265918012 2098 dbSNP
rs1330700921 2102 dbSNP
rs568821364 2106 dbSNP
rs1309618916 2111 dbSNP
rs1374711638 2112 dbSNP
rs1430395654 2112 dbSNP
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rs950209202 2118 dbSNP
rs1425457466 2119 dbSNP
rs1208814237 2123 dbSNP
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rs988874640 5452 dbSNP
rs1182870874 5454 dbSNP
rs1188681622 5463 dbSNP
rs1442000158 5468 dbSNP
rs367813858 5471 dbSNP
rs545772475 5475 dbSNP
rs1325393177 5476 dbSNP
rs1263723289 5481 dbSNP
rs1223144666 5484 dbSNP
rs67903230 5487 dbSNP
rs1280732332 5494 dbSNP
rs1163714247 5496 dbSNP
rs749534995 5502 dbSNP
rs771040980 5509 dbSNP
rs1454958277 5524 dbSNP
rs1462566257 5524 dbSNP
rs1407256926 5532 dbSNP
rs1159098156 5538 dbSNP
rs1325951152 5541 dbSNP
rs911132002 5548 dbSNP
rs778631045 5549 dbSNP
rs1159151310 5551 dbSNP
rs911833628 5553 dbSNP
rs943982522 5558 dbSNP
rs1462540062 5567 dbSNP
rs1243517478 5569 dbSNP
rs1801772 5571 dbSNP
rs1215002920 5576 dbSNP
rs1428613732 5577 dbSNP
rs1285789440 5578 dbSNP
rs563120556 5582 dbSNP
rs548084416 5595 dbSNP
rs1362480733 5602 dbSNP
rs1312511791 5605 dbSNP
rs1247709078 5611 dbSNP
rs1384065230 5615 dbSNP
rs1288593772 5623 dbSNP
rs918439506 5626 dbSNP
rs1347423788 5627 dbSNP
rs976757226 5628 dbSNP
rs1319531430 5633 dbSNP
rs183553935 5636 dbSNP
rs1337137671 5641 dbSNP
rs372737791 5642 dbSNP
rs929680835 5648 dbSNP
rs1165772017 5653 dbSNP
rs1445406285 5654 dbSNP
rs1414266597 5655 dbSNP
rs1185677586 5663 dbSNP
rs1484868307 5666 dbSNP
rs935290776 5670 dbSNP
rs1217205788 5671 dbSNP
rs1490061954 5690 dbSNP
rs1288941117 5701 dbSNP
rs1224266178 5718 dbSNP
rs1359625380 5722 dbSNP
rs888072381 5722 dbSNP
rs1053881068 5736 dbSNP
rs530260717 5740 dbSNP
rs906104738 5741 dbSNP
rs948217251 5741 dbSNP
rs1003103560 5742 dbSNP
rs867234714 5742 dbSNP
rs1045236753 5743 dbSNP
rs1304958168 5744 dbSNP
rs1243192867 5747 dbSNP
rs906812966 5758 dbSNP
rs1425565040 5759 dbSNP
rs956221979 5763 dbSNP
rs1168578757 5764 dbSNP
rs1472706921 5765 dbSNP
rs1003789283 5767 dbSNP
rs1021708221 5780 dbSNP
rs1194378000 5781 dbSNP
rs527604365 5784 dbSNP
rs1480037409 5786 dbSNP
rs1266158641 5788 dbSNP
rs141912230 5788 dbSNP
rs994883159 5801 dbSNP
rs985462652 5802 dbSNP
rs1250453023 5803 dbSNP
rs911237585 5805 dbSNP
rs778367922 5806 dbSNP
rs1027425018 5810 dbSNP
rs187801633 5816 dbSNP
rs1223442699 5817 dbSNP
rs1344126691 5825 dbSNP
rs1007376852 5826 dbSNP
rs145792111 5829 dbSNP
rs556184327 5844 dbSNP
rs1372666205 5846 dbSNP
rs1296738469 5848 dbSNP
rs1463712461 5867 dbSNP
rs1356078558 5873 dbSNP
rs1171044493 5885 dbSNP
rs1469258264 5886 dbSNP
rs79377091 5899 dbSNP
rs11542094 5900 dbSNP
rs1427056482 5902 dbSNP
rs746915266 5903 dbSNP
rs568152337 5908 dbSNP
rs116079735 5911 dbSNP
rs1048298860 5912 dbSNP
rs376501914 5912 dbSNP
rs1481370879 5914 dbSNP
rs1239201671 5916 dbSNP
rs924490726 5918 dbSNP
rs956742439 5923 dbSNP
rs1291165502 5927 dbSNP
rs909626106 5933 dbSNP
rs1321822743 5936 dbSNP
rs1234185946 5938 dbSNP
rs1287925486 5942 dbSNP
rs1265588920 5943 dbSNP
rs1348711081 5948 dbSNP
rs768644006 5949 dbSNP
rs1285588103 5955 dbSNP
rs1393367429 5957 dbSNP
rs1044720467 5958 dbSNP
rs915350222 5960 dbSNP
rs948103465 5966 dbSNP
rs906211994 5969 dbSNP
rs1178569523 5970 dbSNP
rs1045291654 5977 dbSNP
rs1362710930 5982 dbSNP
rs928113508 5983 dbSNP
rs1057325918 5989 dbSNP
rs939460739 5994 dbSNP
rs550378516 5996 dbSNP
rs1036624270 6002 dbSNP
rs1486188012 6005 dbSNP
rs1182560742 6009 dbSNP
rs1188299753 6010 dbSNP
rs898048712 6028 dbSNP
rs1485790844 6029 dbSNP
rs1259074319 6041 dbSNP
rs994536549 6044 dbSNP
rs1241215339 6064 dbSNP
rs1049192690 6065 dbSNP
rs1468169777 6069 dbSNP
rs535488503 6070 dbSNP
rs1244038731 6071 dbSNP
rs1335862494 6072 dbSNP
rs1380324355 6072 dbSNP
rs1408669128 6074 dbSNP
rs1010350434 6078 dbSNP
rs527630290 6078 dbSNP
rs1022236804 6085 dbSNP
rs1413788475 6090 dbSNP
rs1454928033 6092 dbSNP
rs866474062 6102 dbSNP
rs968810701 6115 dbSNP
rs1442336188 6119 dbSNP
rs1377085775 6121 dbSNP
rs1415160110 6128 dbSNP
rs771382019 6129 dbSNP
rs138704482 6141 dbSNP
rs1801773 6146 dbSNP
rs1007403925 6152 dbSNP
rs1018245799 6156 dbSNP
rs965377663 6157 dbSNP
rs1488691756 6163 dbSNP
rs1291056961 6165 dbSNP
rs1018612811 6169 dbSNP
rs1241317818 6174 dbSNP
rs1280164947 6180 dbSNP
rs1361807304 6182 dbSNP
rs965860519 6186 dbSNP
rs554886340 6199 dbSNP
rs976625326 6210 dbSNP
rs1025566176 6212 dbSNP
rs1245302945 6213 dbSNP
rs1283083719 6216 dbSNP
rs1293425765 6221 dbSNP
rs1401757625 6226 dbSNP
rs998614567 6234 dbSNP
rs1301921820 6236 dbSNP
rs951312208 6252 dbSNP
rs1031604262 6256 dbSNP
rs3211339 6260 dbSNP
rs1392373491 6264 dbSNP
rs983957305 6266 dbSNP
rs745902475 6271 dbSNP
rs149267373 6272 dbSNP
rs1195969945 6277 dbSNP
rs1204815253 6285 dbSNP
rs3211340 6286 dbSNP
rs1268307211 6287 dbSNP
rs766447959 6297 dbSNP
rs1490853672 6305 dbSNP
rs915218306 6306 dbSNP
rs1290905814 6311 dbSNP
rs3211341 6313 dbSNP
rs1195434654 6316 dbSNP
rs980944512 6323 dbSNP
rs969499716 6324 dbSNP
rs1249348242 6327 dbSNP
rs1220400979 6337 dbSNP
rs1435672847 6346 dbSNP
rs1341013428 6350 dbSNP
rs1183382445 6361 dbSNP
rs980855138 6364 dbSNP
rs774668200 6369 dbSNP
rs1332288001 6376 dbSNP
rs1323881943 6381 dbSNP
rs1408949194 6385 dbSNP
rs3211342 6397 dbSNP
rs1394788380 6403 dbSNP
rs1173222088 6406 dbSNP
rs1233001541 6409 dbSNP
rs939024418 6413 dbSNP
rs1801771 6416 dbSNP
rs1052083230 6418 dbSNP
rs892032033 6420 dbSNP
rs1453234182 6421 dbSNP
rs58136329 6421 dbSNP
rs7221 6422 dbSNP
rs1396793396 6428 dbSNP
rs554075580 6433 dbSNP
rs1248191638 6456 dbSNP
rs1200254852 6461 dbSNP
rs1318309608 6466 dbSNP
rs1262479626 6477 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4154.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 4154.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000357472.3 | 3UTR | UUAAAAAUGUUGCACUUAUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000357472.3 | 3UTR | UUAAAAAUGUUGCACUUAUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000357472.3 | 3UTR | UUAAAAAUGUUGCACUUAUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.69 1.3e-4 0.729 4.0e-5 23 Click to see details
GSE28544 Breast cancer -0.539 3.3e-3 -0.362 4.1e-2 24 Click to see details
GSE28260 Renal cortex and medulla 0.583 1.8e-2 0.522 3.4e-2 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.414 3.5e-2 0.547 6.3e-3 20 Click to see details
GSE26953 Aortic valvular endothelial cells 0.376 3.5e-2 0.315 6.7e-2 24 Click to see details
GSE19783 ER- ER- breast cancer -0.183 5.3e-2 -0.136 1.2e-1 79 Click to see details
GSE19536 Breast cancer -0.149 6.9e-2 -0.110 1.4e-1 100 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.257 1.1e-1 0.294 7.7e-2 25 Click to see details
GSE19350 CNS germ cell tumors 0.295 1.8e-1 0.348 1.3e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.153 2.0e-1 0.178 1.6e-1 32 Click to see details
GSE19783 ER+ ER+ breast cancer 0.194 2.1e-1 0.203 2.0e-1 20 Click to see details
GSE38226 Liver fibrosis 0.147 2.6e-1 0.239 1.5e-1 21 Click to see details
GSE21687 Ependynoma primary tumors -0.076 2.8e-1 -0.081 2.6e-1 64 Click to see details
GSE17498 Multiple myeloma -0.074 3.2e-1 -0.063 3.5e-1 40 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.103 4.0e-1 0.033 4.7e-1 9 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.007 4.9e-1 0.471 8.7e-3 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC -0.334 0 -0.327 0 68 Click to see details
PCPG 0.997 0.02 1.000 0.5 3 Click to see details
KICH -0.361 0.04 -0.283 0.09 25 Click to see details
STAD -0.31 0.04 -0.381 0.02 32 Click to see details
KIRP 0.303 0.05 0.191 0.15 32 Click to see details
LIHC -0.242 0.05 -0.226 0.06 49 Click to see details
BLCA -0.399 0.05 -0.362 0.07 18 Click to see details
LUSC -0.258 0.06 -0.242 0.07 38 Click to see details
PAAD 0.839 0.08 0.400 0.3 4 Click to see details
PRAD 0.195 0.09 0.169 0.12 50 Click to see details
HNSC -0.12 0.22 -0.074 0.32 42 Click to see details
CHOL 0.215 0.29 0.150 0.35 9 Click to see details
CESC -0.513 0.33 -0.500 0.33 3 Click to see details
UCEC 0.104 0.34 -0.054 0.41 19 Click to see details
BRCA -0.033 0.38 -0.058 0.3 84 Click to see details
LUAD -0.063 0.42 -0.098 0.38 12 Click to see details
THCA -0.022 0.43 -0.059 0.33 59 Click to see details
ESCA -0.051 0.44 -0.118 0.36 11 Click to see details
ESCA -0.051 0.44 -0.118 0.36 11 Click to see details
44 hsa-miR-628-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT037783 NELFE negative elongation factor complex member E 1 1
MIRT200944 ZNF264 zinc finger protein 264 2 6
MIRT441916 ACADSB acyl-CoA dehydrogenase, short/branched chain 2 2
MIRT443436 PLSCR1 phospholipid scramblase 1 2 2
MIRT443447 CLIC5 chloride intracellular channel 5 2 2
MIRT443906 ZNF256 zinc finger protein 256 2 2
MIRT449750 SMYD2 SET and MYND domain containing 2 2 2
MIRT461377 SLFN12L schlafen family member 12 like 2 2
MIRT466416 TFAP2A transcription factor AP-2 alpha 2 8
MIRT486594 CTPS2 CTP synthase 2 2 2
MIRT491945 VPS52 VPS52, GARP complex subunit 2 2
MIRT513492 SSR1 signal sequence receptor subunit 1 2 6
MIRT528599 ZNF326 zinc finger protein 326 2 2
MIRT531325 SEMA3D semaphorin 3D 2 2
MIRT532082 RTTN rotatin 2 2
MIRT532563 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT532976 ZNF12 zinc finger protein 12 2 2
MIRT534075 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT536103 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT536183 MAOB monoamine oxidase B 2 2
MIRT543755 UBXN2B UBX domain protein 2B 2 2
MIRT550000 KIAA0408 KIAA0408 2 2
MIRT551237 COLEC10 collectin subfamily member 10 2 2
MIRT567554 FEN1 flap structure-specific endonuclease 1 2 2
MIRT570387 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT570808 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT576346 Pxdn peroxidasin 2 2
MIRT576520 Txlna taxilin alpha 2 2
MIRT576893 Poteg POTE ankyrin domain family, member G 2 2
MIRT606796 BICD2 BICD cargo adaptor 2 2 2
MIRT625909 GBP6 guanylate binding protein family member 6 2 2
MIRT626869 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT643603 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT645451 FOXE1 forkhead box E1 2 2
MIRT652265 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT689023 ARID1A AT-rich interaction domain 1A 2 2
MIRT691057 CRCP CGRP receptor component 2 2
MIRT704712 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT713069 ENTHD1 ENTH domain containing 1 2 2
MIRT719483 RBM27 RNA binding motif protein 27 2 2
MIRT732944 AGAP2-AS1 AGAP2 antisense RNA 1 3 0
MIRT732945 KLF12 Kruppel like factor 12 3 0
MIRT733520 BMP2 bone morphogenetic protein 2 3 0
MIRT733521 ETV1 ETS variant 1 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-628-5p 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-628 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-628-5p Sunitinib 5329102 NSC750690 approved sensitive Low Renal Cell Cancer tissue
hsa-miR-628-5p Sunitinib 5329102 NSC750690 approved sensitive Low Renal Cell Cancer cell line (OS-RC-2)
hsa-miR-628-5p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line
hsa-miR-628-5p Dabrafenib + Trametinib sensitive High Melanoma cell line
hsa-miR-628-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line
hsa-miR-628-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line
hsa-miR-628-5p Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-628-5p Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-628-5p Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-628-5p Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-628-5p Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-628-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-628-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-628-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-628-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-628-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-628-5p Paclitaxel 36314 NSC125973 approved resistant cell line (SKVO3ip1)
hsa-miR-628-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HeyA8)
hsa-miR-628-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM43)
hsa-miR-628-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-628-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM47)
hsa-miR-628-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-628-5p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-628-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-628-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-628-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-628-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-628-5p Platinum-based doublet chemotherapy resistant tissue (lung adenocarcinoma)
hsa-miR-628-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR4)
hsa-miR-628-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-628-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-628-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)
hsa-miR-628-5p Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-628-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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