miRTarBase - #MIRT536523


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pre-miRNA Information
pre-miRNA hsa-mir-938   
Genomic Coordinates chr10: 29602264 - 29602346
Synonyms MIRN938, hsa-mir-938, MIR938
Description Homo sapiens miR-938 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-938
Sequence 15| UGCCCUUAAAGGUGAACCCAGU |36
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28704008 2 COSMIC
COSN31533921 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs12416605 2 dbSNP
rs1348880424 3 dbSNP
rs1205636191 4 dbSNP
rs757919276 12 dbSNP
rs754296125 14 dbSNP
rs573596343 17 dbSNP
rs756660742 18 dbSNP
rs753092730 21 dbSNP
Putative Targets

Gene Information
Gene Symbol KCTD10   
Synonyms BTBD28, MSTP028, ULRO61, hBACURD3
Description potassium channel tetramerization domain containing 10
Transcript NM_031954   
Expression
Putative miRNA Targets on KCTD10
3'UTR of KCTD10
(miRNA target sites are highlighted)		 
>KCTD10|NM_031954|3'UTR
   1 GCAGGCAAGAGACCGAGCCGCCCTCCTCTCACCGCCCCCACTCCCTGCCGTGCTACACCCAGATCCTGTGCAGGCTGCCG
  81 GGCCCCTTCTGCTTCCCTTGGAGCCTGGAGATACTTTTGTAACAAGCCAGATGATTATTTTGGTATTGCTTGACAAGGCA
 161 AATTGATTGTCTTGACCCAGGCGTATGACCCCTGTCGTTGAACAAGCTGTGTCTAAGATCTCTACTTTTCATGAGAATCT
 241 GAGACTCTTTGGAGCCAGGCTTTCTCGGTTCTCAGAGGAAAAGTATGAATGAGTGTGAAGTGTATGTGAGAACTTTTGTT
 321 TGCAATATTTATTTTTGTGGGTGTCGACTTCCTATGTGGGCTTTTTGGGTGACACTCCCTTAAGGGTTCAGTTTGACAAT
 401 TCTGAGAGTTGTCCTGCAGTTGGAGGCCACCAGAGGTATCTGAGCTCCCTGCTTCCTATTTCATAATCCTCCAGCCCCAG
 481 CAGGTCCACTCCTGGTTCCTGTGTGTTTGGCCCGGGCACAATCCCCACTGCTTTGCTAGACGTGCTTTCTGCCATGTGGC
 561 TTTGGGCCTAGAGCTTGTTGATAATTGCAGCTTGTGGCAGTGGAAATATGGCTGAATGAGCGTCTAAATCGTTGAGACCA
 641 GTGCAACTTTGGGTGCAAGGCTTTGTTTAGGGATCAAGCCTTTTGCCACCTTGGGCTGGTCTTTGGCCTGGTGCTCACTG
 721 GGACCCCATATGTCTGCGTAGGAGCAGAACTTTCCATGGCAGTAAGTGTCCAGCTCTGTTTCTGGTTCTTTCCCCAACTC
 801 CAGCCCCGTCCAGTTGTTCTCCTGATTGACCCGACTCCACTCCAGGAAGGCCATCTGACCCTGTGACAGGCATAGCTCAT
 881 AAACTACCCCTCCCTGGGATCCCGCTCCTCTTCAGCCTCCTTCCCCATGAAGCTGGGCTAACTTTCTAAGTCATTTTGCT
 961 TAGAAATTCAGTGTGGCCCATACCCTTTGTCCTCCCAGCCTGGCATCCAGGCAGGGACACCCTCACACCACCAGCCCCAG
1041 GGAGCTTCCCTGCTATAAACACAGACCCCCTTGTCTTTGCCTCTGATTTTTACACAGTGTAGAGTGGCCAGCAGTGAACA
1121 GGTTGAGGATGTGCGGGTAGATAGATAACTTTGGGTCTGGTTTGTGTCTGTGTTCATGTTTGTTTAAGGGATATGTGTGA
1201 CTGTGGGTGGGGACGTGTGCTTGTGGGGCACAGGTGGCGGCCCCTGCTGGAGCCCGGCTGGGCGCAGCGCCTATGTAGGA
1281 CGGGTGTTCTCAGTGACCTACCTCCCAGGCTCCTCTGCACCTGCAAAGGAACAGGAGTGAGTCGTGACTGACAGGGGTGG
1361 TTGAGACTAGACTAGGTAGAGTAGTTACCAGGAGATGTGAATGTGCGTCAGGTGATGGATGGGTTTGTCAAGGGAATCGT
1441 TACCGTTTTATACCAAAGGTATTAACATGGGCAGCCTTTGACACATGTATTCCAAAAACGAGTTTATATTTTCAAACGGT
1521 TTTTACAGCTTAGACTTTGTACTTACTGCCCTGCCTGTGACAGTTGTATGCCTTCATTTTGTATCCAACAGCAAAGTCTA
1601 CAATAAAACTTTAAAACAATCATGACTGAATGTCAAAATCGTGTATTGGGCAGATGCTTTTTAAACTGTCGTGTGAGAAA
1681 CTTTTATATTAGGCCATTTGGATTTTATTAAGTGCTAAGGAAAGAGGGCTTACAAAATGTTTCGTAAATATTTTATACTG
1761 TTTAAGTGTTAAACACCAACCCTGTCTTTCTTTTGGGTTGAGCTTTTTTAGAAAGTCGAAGTGAATGTTGGCCAGGAAAA
1841 TGGAAAAGCCATTGTATAAATTTTTTTTTGAGGCGGAGTCTTGCTCTATTGGCCAGGCTGGAGTGTAGTGGCACCATCTC
1921 CACTTACCACAACTTGTGCCTCCTGGGTTCAAGCGATTCTGCTGCCTCAGCCTCCCGAGTAGCTGGGATTGCAGGTACCC
2001 ATCAGCCCATGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCT
2081 GACCCTGTGATCCGACCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCACACCTGGCTGCATAGTGTT
2161 TTAAATGTTTGTGTGAAGAATGAGTTTGTGGAACAATTTGATTTGCTGTGGCCTCTATGCCTAATGAGCTAGTGTTTCTG
2241 GCAGCTCTCTCTACCCAACTTTGCACTTGTAGTTTTGAGTCTTTGTCTCTCTGGAATATGAACAGGTTTATAAAACATTC
2321 CATGGTGAACAATTCTGTCGGCTGCATTATAGCCATGAGTGAATAGACAGCATTGGCTGGTCCAAGCTCTGTTATTGAGT
2401 ATACAAGGAACTGATTTTTCTTATGTTAGCACTAAGGGCAAAAACCAATATTTATAATGTAAGCACTATCCAGGTAAAAC
2481 ACTGGCCCAAGATTTGGTAAAGAGATTTCATTGCAATGTAATAACTACAGTTTTTTACAAATTGGAACAGCTTTGGTGTG
2561 TCGTAATCAAGGGTTTTTTTTGTTTGTTTGTTTCAAATAAGCCATCTGATTGTGGTGACTGGGGCCCATGTCCAAGACAA
2641 TTCCTGGCATATTCTGTCACCCTCCCGTGGGGCGATCACTGTGTGGGGACCCCATTCCCCAGTTAAAGTGTGTCTCTGTA
2721 CCTTACAACAGCGATTCAGGACCCAAGTGTGAACAACACTCAGCCCGCCCTCTGGAGCGTGTGCTGTCTTTAGGGCCCTA
2801 CCCAAAGTCACTGTAACAGTTAAGTGTGTCATTAACCTTTCTGTCTCTTTGCGCCATAAAAAAATGCTCAAAGTTTTAGA
2881 TGTAGCCACTGTATGTTGTACAAACGTTGGCGACATGTAAAATAAAAGTCATAAAATGCTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugACCCA-AGU--GGAAAUUCCCGu 5'
            |||||  ||  || |||||||: 
Target 5' ttTGGGTGACACTCCCTTAAGGGTt 3'
 364 - 388 150.00 -19.60
2 
miRNA  3' ugaccCAAGUGGAAAUUCCCGu 5'
               ||| | |  ||||||| 
Target 5' cttatGTT-AGCACTAAGGGCa 3'
 2420 - 2440 148.00 -12.90
3 
miRNA  3' ugACCCAAGU----GGAAAUUCCCgu 5'
            || |||||    : ||||||||  
Target 5' tcTGTGTTCATGTTTGTTTAAGGGat 3'
 1167 - 1192 146.00 -17.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30132688 3 COSMIC
COSN30138226 14 COSMIC
COSN30479210 19 COSMIC
COSN30151233 28 COSMIC
COSN30108384 33 COSMIC
COSN30191914 50 COSMIC
COSN2381445 55 COSMIC
COSN26981157 55 COSMIC
COSN31483231 91 COSMIC
COSN30135106 126 COSMIC
COSN6613052 356 COSMIC
COSN22087861 411 COSMIC
COSN1556946 463 COSMIC
COSN22389311 634 COSMIC
COSN16171749 1062 COSMIC
COSN20110119 1236 COSMIC
COSN8694245 1844 COSMIC
COSN16216285 1964 COSMIC
COSN17182633 2114 COSMIC
COSN5929985 2494 COSMIC
COSN17183299 2573 COSMIC
COSN29190712 2669 COSMIC
COSN25703931 2778 COSMIC
COSN29239556 2794 COSMIC
COSN1141756 2905 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778251130 2 dbSNP
rs756566223 4 dbSNP
rs371507611 6 dbSNP
rs768020325 8 dbSNP
rs754997156 10 dbSNP
rs369203016 14 dbSNP
rs377189484 15 dbSNP
rs763282619 18 dbSNP
rs199657965 19 dbSNP
rs190527405 20 dbSNP
rs760391344 21 dbSNP
rs1194096078 22 dbSNP
rs186883599 24 dbSNP
rs1396751737 25 dbSNP
rs1050546481 26 dbSNP
rs1339396237 29 dbSNP
rs376895879 33 dbSNP
rs772155801 34 dbSNP
rs745329737 35 dbSNP
rs1176045076 38 dbSNP
rs769683715 39 dbSNP
rs1421742049 40 dbSNP
rs200238297 47 dbSNP
rs777996505 49 dbSNP
rs756437155 50 dbSNP
rs562737194 56 dbSNP
rs1028291225 58 dbSNP
rs142625906 68 dbSNP
rs1273678304 69 dbSNP
rs1472629555 74 dbSNP
rs948126112 79 dbSNP
rs534492784 80 dbSNP
rs1270434059 84 dbSNP
rs1457054503 86 dbSNP
rs991279035 89 dbSNP
rs1214019515 98 dbSNP
rs1484052538 103 dbSNP
rs560999037 104 dbSNP
rs568772657 110 dbSNP
rs1467047090 112 dbSNP
rs781194656 117 dbSNP
rs1373613496 119 dbSNP
rs1476430205 124 dbSNP
rs1166286124 131 dbSNP
rs1312060784 137 dbSNP
rs971995243 139 dbSNP
rs1261818131 140 dbSNP
rs1423110095 143 dbSNP
rs572071990 155 dbSNP
rs1328294686 159 dbSNP
rs1329922243 181 dbSNP
rs1440685351 182 dbSNP
rs560432985 183 dbSNP
rs1019015046 191 dbSNP
rs78823865 193 dbSNP
rs1381660677 194 dbSNP
rs917497094 196 dbSNP
rs1274718138 197 dbSNP
rs1332372747 202 dbSNP
rs1209089363 203 dbSNP
rs1262326969 214 dbSNP
rs1448672983 231 dbSNP
rs1262603973 233 dbSNP
rs1447035439 239 dbSNP
rs1403718344 242 dbSNP
rs747271863 245 dbSNP
rs74509921 260 dbSNP
rs926144921 262 dbSNP
rs1457711326 266 dbSNP
rs556766593 267 dbSNP
rs893994776 274 dbSNP
rs1387694373 277 dbSNP
rs538009994 281 dbSNP
rs55816288 287 dbSNP
rs180779987 293 dbSNP
rs1046826451 301 dbSNP
rs533792780 302 dbSNP
rs1182735467 304 dbSNP
rs566502378 308 dbSNP
rs551073513 316 dbSNP
rs1353239535 323 dbSNP
rs189783797 325 dbSNP
rs569052854 328 dbSNP
rs1352703018 329 dbSNP
rs185216645 345 dbSNP
rs1285279220 346 dbSNP
rs779597264 349 dbSNP
rs1190229899 351 dbSNP
rs1255604248 354 dbSNP
rs920410147 355 dbSNP
rs1182936427 356 dbSNP
rs139260683 365 dbSNP
rs1365938056 367 dbSNP
rs1452149096 373 dbSNP
rs755494746 374 dbSNP
rs1158541727 375 dbSNP
rs749965974 377 dbSNP
rs962264251 385 dbSNP
rs767065975 402 dbSNP
rs567433437 406 dbSNP
rs1314191165 409 dbSNP
rs953058046 409 dbSNP
rs888271415 412 dbSNP
rs1048179607 416 dbSNP
rs1323671914 419 dbSNP
rs1329140350 420 dbSNP
rs549036190 425 dbSNP
rs527756456 435 dbSNP
rs181128271 438 dbSNP
rs1348525718 441 dbSNP
rs1213035181 442 dbSNP
rs1228018898 458 dbSNP
rs1278327276 463 dbSNP
rs1380276198 470 dbSNP
rs904916030 480 dbSNP
rs878926426 482 dbSNP
rs1196582190 483 dbSNP
rs1252978117 501 dbSNP
rs372840457 507 dbSNP
rs71683895 507 dbSNP
rs1010592480 508 dbSNP
rs949064886 513 dbSNP
rs11540749 514 dbSNP
rs1053358382 525 dbSNP
rs1375449576 530 dbSNP
rs1465148579 531 dbSNP
rs1387841113 532 dbSNP
rs1398263598 540 dbSNP
rs934867172 541 dbSNP
rs533684568 542 dbSNP
rs146273754 553 dbSNP
rs906737028 560 dbSNP
rs76026159 562 dbSNP
rs12427319 568 dbSNP
rs1311650310 570 dbSNP
rs1228331631 576 dbSNP
rs1253281264 579 dbSNP
rs1368606309 583 dbSNP
rs1163621982 588 dbSNP
rs1046650077 592 dbSNP
rs954369258 616 dbSNP
rs1198335416 617 dbSNP
rs1012630661 618 dbSNP
rs1477117 621 dbSNP
rs868826762 622 dbSNP
rs1450586611 630 dbSNP
rs931375537 631 dbSNP
rs1247967392 634 dbSNP
rs965403986 638 dbSNP
rs188731020 639 dbSNP
rs918711322 640 dbSNP
rs371668991 641 dbSNP
rs1394920985 642 dbSNP
rs1442884489 643 dbSNP
rs1489497184 655 dbSNP
rs1366895130 660 dbSNP
rs1004175993 661 dbSNP
rs118106263 668 dbSNP
rs1221069285 679 dbSNP
rs16940237 682 dbSNP
rs11540748 700 dbSNP
rs1337363903 701 dbSNP
rs1212281211 705 dbSNP
rs1246620399 711 dbSNP
rs905051540 713 dbSNP
rs1186557522 726 dbSNP
rs1263252696 729 dbSNP
rs1476584596 730 dbSNP
rs1024726470 731 dbSNP
rs1418212241 734 dbSNP
rs755939717 738 dbSNP
rs1364283764 739 dbSNP
rs1162450077 742 dbSNP
rs1349162186 747 dbSNP
rs1013789081 766 dbSNP
rs139133763 778 dbSNP
rs1338491186 784 dbSNP
rs953318269 784 dbSNP
rs921588004 785 dbSNP
rs61743570 786 dbSNP
rs1388509371 790 dbSNP
rs1357660834 796 dbSNP
rs989140580 807 dbSNP
rs7295954 808 dbSNP
rs539016568 813 dbSNP
rs185247574 831 dbSNP
rs543970645 832 dbSNP
rs14064 835 dbSNP
rs932817655 839 dbSNP
rs921470586 844 dbSNP
rs1025622733 846 dbSNP
rs1412825140 856 dbSNP
rs370059628 857 dbSNP
rs1419505108 860 dbSNP
rs535287182 862 dbSNP
rs1170812340 866 dbSNP
rs764432123 868 dbSNP
rs1161160669 869 dbSNP
rs1430810359 876 dbSNP
rs1372936333 878 dbSNP
rs1419150718 880 dbSNP
rs567939779 883 dbSNP
rs575418391 885 dbSNP
rs1283878013 892 dbSNP
rs367751021 897 dbSNP
rs1225902371 902 dbSNP
rs1026981613 903 dbSNP
rs1353640993 904 dbSNP
rs527830023 907 dbSNP
rs73194269 918 dbSNP
rs981138554 923 dbSNP
rs77531759 928 dbSNP
rs1207558949 934 dbSNP
rs747040862 936 dbSNP
rs1489903304 937 dbSNP
rs1236576672 941 dbSNP
rs1480832147 952 dbSNP
rs1025196506 963 dbSNP
rs533141080 969 dbSNP
rs778097786 974 dbSNP
rs1378342217 978 dbSNP
rs1439007683 980 dbSNP
rs1037126801 986 dbSNP
rs1174291946 987 dbSNP
rs1396947535 989 dbSNP
rs1412882190 999 dbSNP
rs940491485 1003 dbSNP
rs1355394416 1004 dbSNP
rs1444742685 1006 dbSNP
rs772146344 1008 dbSNP
rs572892759 1015 dbSNP
rs1376762846 1018 dbSNP
rs1277038421 1019 dbSNP
rs1306332318 1020 dbSNP
rs892197243 1022 dbSNP
rs1217036508 1033 dbSNP
rs1277458512 1042 dbSNP
rs181754287 1044 dbSNP
rs779363694 1045 dbSNP
rs1030769745 1046 dbSNP
rs1200221709 1051 dbSNP
rs755544851 1055 dbSNP
rs1249455497 1061 dbSNP
rs1236164414 1067 dbSNP
rs1052060238 1070 dbSNP
rs1194154995 1071 dbSNP
rs1248455757 1074 dbSNP
rs868777110 1076 dbSNP
rs1331642013 1084 dbSNP
rs1477074774 1096 dbSNP
rs1172081360 1101 dbSNP
rs1420413582 1105 dbSNP
rs931892172 1114 dbSNP
rs921891837 1116 dbSNP
rs1299931585 1118 dbSNP
rs1402577807 1123 dbSNP
rs141898856 1134 dbSNP
rs932930517 1135 dbSNP
rs1308258906 1142 dbSNP
rs1329913395 1144 dbSNP
rs1428758991 1148 dbSNP
rs1273735766 1151 dbSNP
rs1339608930 1168 dbSNP
rs936346017 1170 dbSNP
rs900089212 1177 dbSNP
rs1396184805 1185 dbSNP
rs1166544387 1186 dbSNP
rs765384728 1192 dbSNP
rs7967399 1193 dbSNP
rs977885467 1202 dbSNP
rs970909138 1206 dbSNP
rs908602284 1209 dbSNP
rs982856728 1214 dbSNP
rs1025129827 1215 dbSNP
rs562308838 1216 dbSNP
rs991023611 1223 dbSNP
rs1479494496 1235 dbSNP
rs1449798052 1238 dbSNP
rs1254141569 1239 dbSNP
rs760029667 1239 dbSNP
rs182871483 1240 dbSNP
rs192251818 1242 dbSNP
rs3217162 1242 dbSNP
rs34650913 1242 dbSNP
rs796811851 1242 dbSNP
rs1191737214 1243 dbSNP
rs959611271 1244 dbSNP
rs1462281981 1245 dbSNP
rs919963747 1245 dbSNP
rs1027243531 1248 dbSNP
rs540824674 1255 dbSNP
rs995472242 1256 dbSNP
rs572977957 1257 dbSNP
rs1322248298 1262 dbSNP
rs980805121 1263 dbSNP
rs780693972 1264 dbSNP
rs368352301 1265 dbSNP
rs1345564125 1268 dbSNP
rs1262442299 1269 dbSNP
rs557527430 1273 dbSNP
rs1024911254 1276 dbSNP
rs1267027676 1277 dbSNP
rs756840469 1281 dbSNP
rs545796182 1282 dbSNP
rs1051602730 1284 dbSNP
rs931818650 1287 dbSNP
rs771286268 1302 dbSNP
rs1214617706 1305 dbSNP
rs1262669853 1309 dbSNP
rs1053641995 1311 dbSNP
rs536262245 1312 dbSNP
rs1288470082 1318 dbSNP
rs1408793022 1322 dbSNP
rs1000656628 1325 dbSNP
rs1335346930 1327 dbSNP
rs1367106709 1333 dbSNP
rs138752845 1343 dbSNP
rs76929980 1344 dbSNP
rs949157385 1353 dbSNP
rs900058411 1355 dbSNP
rs1403436648 1370 dbSNP
rs371576340 1372 dbSNP
rs1336634282 1373 dbSNP
rs765086475 1377 dbSNP
rs1338450905 1378 dbSNP
rs879614390 1379 dbSNP
rs1243876374 1381 dbSNP
rs1280051352 1382 dbSNP
rs1355785123 1383 dbSNP
rs1237959782 1385 dbSNP
rs1468744929 1390 dbSNP
rs1041311432 1395 dbSNP
rs1414238498 1398 dbSNP
rs575150059 1406 dbSNP
rs535392820 1407 dbSNP
rs887318444 1423 dbSNP
rs1183006245 1427 dbSNP
rs1047130363 1429 dbSNP
rs557280117 1430 dbSNP
rs367786966 1431 dbSNP
rs1045449618 1434 dbSNP
rs920146609 1439 dbSNP
rs948093916 1443 dbSNP
rs1442788471 1445 dbSNP
rs1242363036 1446 dbSNP
rs773412685 1454 dbSNP
rs1399688105 1456 dbSNP
rs1201652506 1461 dbSNP
rs1466220982 1464 dbSNP
rs555322490 1465 dbSNP
rs961954546 1467 dbSNP
rs1237894908 1470 dbSNP
rs1308505884 1479 dbSNP
rs1015587052 1482 dbSNP
rs1348685264 1484 dbSNP
rs538565275 1485 dbSNP
rs568013253 1495 dbSNP
rs1254430588 1500 dbSNP
rs1344589878 1503 dbSNP
rs759317003 1506 dbSNP
rs1240439640 1515 dbSNP
rs1008684371 1517 dbSNP
rs923803510 1518 dbSNP
rs1285586809 1520 dbSNP
rs1292619306 1525 dbSNP
rs1245138803 1526 dbSNP
rs1433249881 1530 dbSNP
rs1341423012 1538 dbSNP
rs1336532642 1544 dbSNP
rs1451048308 1548 dbSNP
rs1391500177 1549 dbSNP
rs1321235725 1558 dbSNP
rs1400202616 1560 dbSNP
rs1465258448 1564 dbSNP
rs979265962 1567 dbSNP
rs967750024 1568 dbSNP
rs1330580620 1569 dbSNP
rs1165211047 1570 dbSNP
rs1368236148 1570 dbSNP
rs1473278642 1571 dbSNP
rs1388527596 1572 dbSNP
rs1299328154 1575 dbSNP
rs1384334159 1575 dbSNP
rs1330693765 1576 dbSNP
rs1181545612 1577 dbSNP
rs1451187384 1578 dbSNP
rs1248570834 1582 dbSNP
rs1316441891 1583 dbSNP
rs552754654 1584 dbSNP
rs1215063695 1585 dbSNP
rs1444765090 1589 dbSNP
rs1028758934 1590 dbSNP
rs1264675936 1591 dbSNP
rs1291463293 1591 dbSNP
rs1432138824 1592 dbSNP
rs1210031004 1594 dbSNP
rs1193891727 1595 dbSNP
rs1425401774 1596 dbSNP
rs1358328523 1597 dbSNP
rs1169706633 1598 dbSNP
rs1314742084 1599 dbSNP
rs1350361826 1602 dbSNP
rs1459401723 1623 dbSNP
rs532582559 1623 dbSNP
rs996214590 1627 dbSNP
rs965766169 1632 dbSNP
rs1271287052 1633 dbSNP
rs3214388 1639 dbSNP
rs534472232 1640 dbSNP
rs1218332762 1641 dbSNP
rs776603313 1645 dbSNP
rs1323973673 1648 dbSNP
rs1219973503 1653 dbSNP
rs1265407994 1663 dbSNP
rs1487869568 1668 dbSNP
rs1216726064 1670 dbSNP
rs995935062 1670 dbSNP
rs1365198987 1671 dbSNP
rs1161360928 1672 dbSNP
rs1414230931 1673 dbSNP
rs770744225 1677 dbSNP
rs1053571845 1681 dbSNP
rs1185835638 1686 dbSNP
rs1474407756 1688 dbSNP
rs995652349 1690 dbSNP
rs1399652884 1694 dbSNP
rs898546168 1699 dbSNP
rs1045180931 1706 dbSNP
rs1227029132 1714 dbSNP
rs1312565466 1715 dbSNP
rs1247908309 1721 dbSNP
rs1355055897 1724 dbSNP
rs1240193231 1725 dbSNP
rs1287570122 1727 dbSNP
rs1487053198 1739 dbSNP
rs1214598081 1742 dbSNP
rs1237764779 1743 dbSNP
rs73194268 1743 dbSNP
rs917964048 1744 dbSNP
rs1441097601 1748 dbSNP
rs1490068125 1749 dbSNP
rs1440268986 1758 dbSNP
rs1056387035 1764 dbSNP
rs935200686 1766 dbSNP
rs1289147132 1767 dbSNP
rs1419217195 1768 dbSNP
rs1206941507 1769 dbSNP
rs902463229 1775 dbSNP
rs923855827 1776 dbSNP
rs1274212378 1783 dbSNP
rs1214466110 1784 dbSNP
rs1338040213 1786 dbSNP
rs1302667732 1788 dbSNP
rs1446190283 1788 dbSNP
rs1378236774 1790 dbSNP
rs1276628151 1792 dbSNP
rs1405631415 1794 dbSNP
rs1345033365 1798 dbSNP
rs1327282771 1804 dbSNP
rs1307772746 1806 dbSNP
rs1350860745 1810 dbSNP
rs1042055576 1817 dbSNP
rs773118194 1818 dbSNP
rs1313591268 1822 dbSNP
rs551556827 1822 dbSNP
rs772353614 1823 dbSNP
rs1370903371 1827 dbSNP
rs1242321122 1835 dbSNP
rs1458084801 1839 dbSNP
rs1180399026 1846 dbSNP
rs1169521379 1852 dbSNP
rs967919743 1860 dbSNP
rs1439148050 1861 dbSNP
rs917641841 1865 dbSNP
rs1173240910 1870 dbSNP
rs1172584208 1873 dbSNP
rs921661941 1874 dbSNP
rs73194266 1875 dbSNP
rs373511372 1877 dbSNP
rs1483203319 1881 dbSNP
rs1467577579 1886 dbSNP
rs1233776018 1887 dbSNP
rs111640453 1888 dbSNP
rs1376833992 1893 dbSNP
rs1204281375 1897 dbSNP
rs190452213 1898 dbSNP
rs529660008 1901 dbSNP
rs1281338759 1906 dbSNP
rs1369220970 1913 dbSNP
rs951609452 1918 dbSNP
rs201876292 1919 dbSNP
rs1318328888 1920 dbSNP
rs920074437 1921 dbSNP
rs1256009044 1922 dbSNP
rs1437199389 1927 dbSNP
rs755275676 1931 dbSNP
rs1199612027 1932 dbSNP
rs1248506084 1941 dbSNP
rs974272226 1943 dbSNP
rs1281498626 1945 dbSNP
rs1230419286 1954 dbSNP
rs1478975936 1955 dbSNP
rs143893351 1964 dbSNP
rs1400154087 1968 dbSNP
rs908789801 1976 dbSNP
rs986784097 1977 dbSNP
rs1439761655 1978 dbSNP
rs1433759534 1982 dbSNP
rs1360750330 1985 dbSNP
rs898686926 1986 dbSNP
rs1337301704 1993 dbSNP
rs769201470 1995 dbSNP
rs546551755 1998 dbSNP
rs1338562270 2000 dbSNP
rs1210327508 2005 dbSNP
rs1449929649 2008 dbSNP
rs1221863675 2017 dbSNP
rs1264092487 2026 dbSNP
rs1478941616 2028 dbSNP
rs896571312 2039 dbSNP
rs1191889994 2040 dbSNP
rs996866902 2041 dbSNP
rs1473351235 2042 dbSNP
rs1165503973 2046 dbSNP
rs957478576 2046 dbSNP
rs1412336332 2053 dbSNP
rs1032129202 2054 dbSNP
rs1301991826 2059 dbSNP
rs1360715745 2064 dbSNP
rs1401440783 2071 dbSNP
rs1296005642 2081 dbSNP
rs1325637859 2091 dbSNP
rs1245321622 2093 dbSNP
rs1001148503 2094 dbSNP
rs1285826757 2096 dbSNP
rs185611017 2097 dbSNP
rs935337522 2105 dbSNP
rs1286853162 2110 dbSNP
rs1042708137 2127 dbSNP
rs902401241 2128 dbSNP
rs1214683219 2129 dbSNP
rs1160788894 2134 dbSNP
rs149451813 2145 dbSNP
rs1443340138 2156 dbSNP
rs201272920 2162 dbSNP
rs1491403661 2163 dbSNP
rs545606500 2165 dbSNP
rs921824838 2169 dbSNP
rs370979496 2170 dbSNP
rs1479853191 2173 dbSNP
rs1380344874 2180 dbSNP
rs1054820818 2181 dbSNP
rs1156436835 2182 dbSNP
rs1383813333 2186 dbSNP
rs1396329604 2193 dbSNP
rs1204832796 2194 dbSNP
rs575280693 2195 dbSNP
rs919712400 2196 dbSNP
rs911662011 2214 dbSNP
rs1261280715 2217 dbSNP
rs563186219 2221 dbSNP
rs1309932206 2223 dbSNP
rs1355939467 2225 dbSNP
rs535105932 2230 dbSNP
rs867400870 2232 dbSNP
rs908762479 2234 dbSNP
rs987475672 2237 dbSNP
rs934282470 2241 dbSNP
rs1222341843 2248 dbSNP
rs1202500904 2253 dbSNP
rs1254485368 2255 dbSNP
rs1381047302 2256 dbSNP
rs974390777 2258 dbSNP
rs1179809859 2260 dbSNP
rs963194833 2261 dbSNP
rs574404352 2265 dbSNP
rs756533673 2266 dbSNP
rs1451778702 2270 dbSNP
rs1403850229 2273 dbSNP
rs746549022 2278 dbSNP
rs1466255527 2279 dbSNP
rs1174014045 2281 dbSNP
rs1453844055 2283 dbSNP
rs1403591065 2285 dbSNP
rs896544493 2285 dbSNP
rs1379040484 2286 dbSNP
rs1389676597 2287 dbSNP
rs957450765 2289 dbSNP
rs1033062096 2305 dbSNP
rs552816253 2306 dbSNP
rs1331803783 2310 dbSNP
rs1344146254 2311 dbSNP
rs1410696518 2316 dbSNP
rs999511564 2320 dbSNP
rs1199682178 2330 dbSNP
rs1156465346 2332 dbSNP
rs1425229252 2334 dbSNP
rs113328172 2339 dbSNP
rs137993541 2340 dbSNP
rs946622782 2345 dbSNP
rs757924866 2346 dbSNP
rs900423582 2350 dbSNP
rs1200538142 2363 dbSNP
rs1038844433 2364 dbSNP
rs1241841350 2371 dbSNP
rs1402317496 2372 dbSNP
rs966959693 2389 dbSNP
rs576991764 2395 dbSNP
rs1020847243 2404 dbSNP
rs1391544093 2411 dbSNP
rs530054897 2424 dbSNP
rs1345125860 2425 dbSNP
rs1219594971 2428 dbSNP
rs1280518563 2432 dbSNP
rs1316499207 2441 dbSNP
rs1260272849 2448 dbSNP
rs764471352 2453 dbSNP
rs1204399470 2458 dbSNP
rs1013903937 2466 dbSNP
rs1213874426 2471 dbSNP
rs1266613107 2502 dbSNP
rs1488511957 2513 dbSNP
rs983189368 2516 dbSNP
rs896434333 2525 dbSNP
rs150938716 2528 dbSNP
rs57545286 2528 dbSNP
rs920295755 2528 dbSNP
rs1244977334 2530 dbSNP
rs1425469794 2530 dbSNP
rs1033342844 2535 dbSNP
rs973486274 2537 dbSNP
rs1001872453 2546 dbSNP
rs1369001104 2548 dbSNP
rs752406823 2549 dbSNP
rs1301412058 2551 dbSNP
rs990974285 2556 dbSNP
rs558704119 2562 dbSNP
rs1038539942 2563 dbSNP
rs1299712588 2567 dbSNP
rs764850725 2569 dbSNP
rs74990107 2570 dbSNP
rs1045857 2578 dbSNP
rs1286643747 2579 dbSNP
rs1022267997 2582 dbSNP
rs1236611113 2582 dbSNP
rs550996756 2582 dbSNP
rs999647344 2582 dbSNP
rs58383562 2583 dbSNP
rs1011344277 2584 dbSNP
rs370261251 2585 dbSNP
rs934234736 2589 dbSNP
rs1161651432 2594 dbSNP
rs376101923 2594 dbSNP
rs536083910 2594 dbSNP
rs72222515 2594 dbSNP
rs900390371 2594 dbSNP
rs1384657818 2595 dbSNP
rs1039394078 2601 dbSNP
rs1459075914 2604 dbSNP
rs921559083 2622 dbSNP
rs1365822291 2623 dbSNP
rs975347300 2625 dbSNP
rs1381911533 2628 dbSNP
rs936013938 2629 dbSNP
rs535808756 2633 dbSNP
rs530748097 2634 dbSNP
rs926013510 2640 dbSNP
rs1315048264 2646 dbSNP
rs766363071 2648 dbSNP
rs1383840506 2652 dbSNP
rs1195927112 2660 dbSNP
rs1285837000 2662 dbSNP
rs760473254 2666 dbSNP
rs565781730 2667 dbSNP
rs143215691 2673 dbSNP
rs1462521159 2674 dbSNP
rs992040297 2680 dbSNP
rs1242516323 2681 dbSNP
rs1184882028 2683 dbSNP
rs193286364 2686 dbSNP
rs564557015 2688 dbSNP
rs139293157 2689 dbSNP
rs1033603231 2694 dbSNP
rs1406012635 2697 dbSNP
rs1001841356 2699 dbSNP
rs898179314 2703 dbSNP
rs920346675 2705 dbSNP
rs1016622206 2708 dbSNP
rs1037347117 2714 dbSNP
rs1004354533 2721 dbSNP
rs1468623105 2724 dbSNP
rs1336582715 2726 dbSNP
rs530527060 2732 dbSNP
rs544879591 2733 dbSNP
rs1280809668 2740 dbSNP
rs1276556034 2758 dbSNP
rs765489365 2762 dbSNP
rs991499949 2763 dbSNP
rs541443384 2766 dbSNP
rs960861360 2767 dbSNP
rs928149574 2770 dbSNP
rs1262354966 2778 dbSNP
rs1458180969 2779 dbSNP
rs1345669648 2786 dbSNP
rs1302132951 2789 dbSNP
rs1231226146 2793 dbSNP
rs6663 2797 dbSNP
rs1191979852 2812 dbSNP
rs1364073903 2813 dbSNP
rs966763004 2818 dbSNP
rs749696535 2819 dbSNP
rs1401603389 2830 dbSNP
rs1022818078 2838 dbSNP
rs1327486884 2838 dbSNP
rs1352259316 2843 dbSNP
rs186702984 2849 dbSNP
rs1293690824 2850 dbSNP
rs1462904141 2853 dbSNP
rs1373027450 2856 dbSNP
rs775945147 2860 dbSNP
rs1169037897 2873 dbSNP
rs540962884 2892 dbSNP
rs965097319 2895 dbSNP
rs1318395848 2898 dbSNP
rs1216225793 2899 dbSNP
rs1270878167 2901 dbSNP
rs1437257787 2903 dbSNP
rs577059320 2905 dbSNP
rs76271636 2906 dbSNP
rs746290732 2911 dbSNP
rs1350990657 2912 dbSNP
rs1008804981 2915 dbSNP
rs890381168 2928 dbSNP
rs925928920 2929 dbSNP
rs1408788971 2932 dbSNP
rs537201452 2932 dbSNP
rs1196172249 2938 dbSNP
rs993308378 2941 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 83892.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000228495.6 | 3UTR | AUUUUUCUUAUGUUAGCACUAAGGGCAAAAACCAAUAUUUAUAAUGUAAGCACUAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.628 1.1e-2 0.643 8.9e-3 13 Click to see details
GSE38226 Liver fibrosis 0.348 6.1e-2 0.383 4.3e-2 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.281 8.7e-2 -0.235 1.3e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.144 2.2e-1 -0.142 2.2e-1 32 Click to see details
GSE28544 Breast cancer 0.164 2.2e-1 0.098 3.2e-1 24 Click to see details
GSE19350 CNS germ cell tumors -0.227 2.4e-1 0.194 2.7e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells 0.152 2.4e-1 0.177 2.0e-1 24 Click to see details
GSE21687 Ependynoma primary tumors 0.036 3.9e-1 0.051 3.4e-1 64 Click to see details
GSE42095 Differentiated embryonic stem cells 0.06 3.9e-1 0.166 2.2e-1 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
-0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
-0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
-0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
-0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
-0.062 4.0e-1 0.260 1.3e-1 20 Click to see details
54 hsa-miR-938 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT073757 NUBP1 nucleotide binding protein 1 2 2
MIRT092006 SNRK SNF related kinase 2 12
MIRT218174 MRPL18 mitochondrial ribosomal protein L18 2 2
MIRT485452 IVNS1ABP influenza virus NS1A binding protein 2 2
MIRT489857 ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 2 2
MIRT495407 SPPL3 signal peptide peptidase like 3 2 4
MIRT495762 ZNF607 zinc finger protein 607 2 2
MIRT497391 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT499227 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT507059 H3F3B H3 histone family member 3B 2 2
MIRT513671 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT526922 IRGQ immunity related GTPase Q 2 4
MIRT527488 OCIAD1 OCIA domain containing 1 2 2
MIRT527566 ADCY7 adenylate cyclase 7 2 2
MIRT528081 NOL9 nucleolar protein 9 2 2
MIRT528535 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 4
MIRT533896 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT536523 KCTD10 potassium channel tetramerization domain containing 10 2 2
MIRT541382 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT550254 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT555975 NPTN neuroplastin 2 2
MIRT557394 H3F3C H3 histone family member 3C 2 2
MIRT568594 ADM adrenomedullin 2 2
MIRT571876 NCL nucleolin 2 2
MIRT572443 TRIM10 tripartite motif containing 10 2 2
MIRT610589 PRDM1 PR/SET domain 1 2 2
MIRT614044 THBS2 thrombospondin 2 2 2
MIRT618412 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT623398 LHFPL2 LHFPL tetraspan subfamily member 2 2 2
MIRT623948 FBXO47 F-box protein 47 2 2
MIRT625349 MGLL monoglyceride lipase 2 2
MIRT635447 FAM180B family with sequence similarity 180 member B 2 2
MIRT638249 SLC16A9 solute carrier family 16 member 9 2 2
MIRT642662 RGS6 regulator of G protein signaling 6 2 2
MIRT646431 ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 2 2
MIRT647172 ARGFX arginine-fifty homeobox 2 2
MIRT654891 POU2F1 POU class 2 homeobox 1 2 2
MIRT659337 CSE1L chromosome segregation 1 like 2 2
MIRT667407 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 2
MIRT698892 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT703841 ETV3 ETS variant 3 2 2
MIRT708322 NT5C 5', 3'-nucleotidase, cytosolic 2 2
MIRT708934 CRY2 cryptochrome circadian clock 2 2 2
MIRT709745 UBD ubiquitin D 2 2
MIRT710265 FAM107A family with sequence similarity 107 member A 2 2
MIRT712576 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 2 2
MIRT712645 TXNL4A thioredoxin like 4A 2 2
MIRT714833 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT720673 SLC39A13 solute carrier family 39 member 13 2 2
MIRT723041 MAPT microtubule associated protein tau 2 2
MIRT723669 CTC1 CST telomere replication complex component 1 2 2
MIRT723772 ROBO4 roundabout guidance receptor 4 2 2
MIRT723812 OR1L8 olfactory receptor family 1 subfamily L member 8 2 2
MIRT736795 RBM5 RNA binding motif protein 5 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-938 Emodin NULL 3220 Microarray K562 cells 23744534 2013 down-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-938 Paclitaxel 36314 NSC125973 approved sensitive High Non-Small Cell Lung Cancer cell line (H358, H1155)
hsa-miR-938 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-938 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-938 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-938 Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-938 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-938 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-938 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-938 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR70)
hsa-miR-938 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-938 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-938 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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