pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol ITPKB   
Synonyms IP3-3KB, IP3K, IP3K-B, IP3KB, PIG37
Description inositol-trisphosphate 3-kinase B
Transcript NM_002221   
Expression
Putative miRNA Targets on ITPKB
3'UTR of ITPKB
(miRNA target sites are highlighted)
>ITPKB|NM_002221|3'UTR
   1 GCTGCCCACGCCCTCCCTGGCCCCCGCCTGGGCCTCCTTTCCTCCTCCTGTGCTTCCTTTCTCGTTCCTAACTTTTCCTT
  81 CACTTACACCTGACTGACCCTCCTGAACTGCACTACAAGACACTTTGTAGAAGAGGAGATGAGAGTTTCTAGTCATTTTC
 161 CTAACTTCAGGGCTTGGAGGTGGTGTTTGCACTGCTTTTTGTAGAGAGGGTCACCTACTAGAAGAGAAATGCCCAGTCTT
 241 AGAGGTGGGTCAGGTGTAGAGCTGGAGGGGGTCCCTGGCTGCTGAGGGGACCCTACCAGATGAGCCCTGCCTCTGGGAGC
 321 CCCCTAGGAAGCACCAGCCTGGACCTACCACCTGCGGAGGCCTGCTGCCCCCTGGCGGCCAGTGCTGTTAGAGTGCTGCC
 401 AAGCACAGCCTTATTTCTGCCGGGGCCTCCCCACCGGAGAGCCCAGGGGGCCGGCCGGGTTCCTGGTCCCTGGCTGGGAG
 481 CAGGGCTTTCTGGTAGTTGGGGCACAAAACCATCGGGGAACCACATGTTGACTGTGAGCAAAGTGTCTTCCGATTAGCAG
 561 CCTCAGGGATGCCCTGGTGGCCTCTCCAGGGCTGCTCAGGCAAGGCCCCCCACCCATCTGGTATGGAAACCTGCCGGCTC
 641 CAGGCCAGACCCAGGAGCCAAGAGAAGGCTGAAGCCAGCTTGGCTGTGTTCTCTGATCTAGGCCTTCCCAGAGGAGGCGA
 721 GCAGAAGCTGTGCCACTTGGAATTGCAACCCATGAGTTCAGAAGGCACACTCTGCCATGCTGAGCTCCAAGGGTGCTACC
 801 AGGGGAAGATGGGATCTATAGAGTCTCTGGGCCCTGGCCCCAGGGAGGAGCACATTTTTCTTGACCCTCACCTACCTGGT
 881 GCTAGTTGGTCAACCCTGCCTGCATACATGGGCTCCTGTCATGGGGCCCAGAGTCCCTTGCAGATATAGAAATAGGGGAG
 961 GAGCTCAGGTCTGCGCCAGGCAGGAAGAAGGCAGGCTTCTGGCTTCCAGAGGTGCCGCGGTGGCCTCCTGGCATCATTTG
1041 TTATTGCCTCTGAAACAAGCCTTACTGCCTGGAGGGCTTAGATTCCTGCTTCTCCAATGTAGTGTGGGTATCTTGTAGGG
1121 TATGTGGTGGATGCCAGGGCGTGCTCCAGGCACCTCTTCCTGAAGTCTCTGCATTTGGAGATTCGTGGAGAACCTATTTA
1201 AGCCCAATTTTAACTGAAAGCCAGTGAGTCTGATATGGAAGGGAATGTAAAATTTGCCTGACTTCTTAAGAACAAAACCC
1281 CCAGCTCTGTGCCCCATGCTCCTTGGGGCTTGCCACCCACTCCTTTGCTGTCAGAGGTACAGGAGCTGGGAGAGTCCAGG
1361 AGCTAGGGACACAGAGGGAGACTATGGACCAAGGTGTGTGTGTCTGGAGGAACCACTGCCCACCCCACCACCCCGGGGTC
1441 TCTGGGGAACTGTCAACCTGCCCACGGGACATGTACATTTCCCCTTTTGTGCTGGAAGTGTGAGTGACACTTGCTGGGGG
1521 TGGAGGGTGGGACACATGAGGATGTATAAGTACAGATTTTAAAAAAGGAAATCAACTTACACTTCCTGGCTCTTGTTTAA
1601 AACAGTGGTGAGCTCCTGTGTGGGCCGACTTGCTAAAGGTCACACACGCGCCCGGTGGAGCACGAGAGACCTCGTGGCAG
1681 CATGTGATCTGGAAGGCAGGCAGGACGGGGGCGTTGGGGAGCCAAAGTCAACTCTGGGCCTCTGGAGCTATAGTGACTTT
1761 TGGGCTAGAAGGGACCCTGGTGGTCTGTGCTTCAGCCATTTGCAGGGCAGGGGCATCATTAATTCAGACGTAAAGATTCT
1841 ATGAATATGGACTGGCCAAAAGTTATCCTTACTCCATCTGTGAAAGAAGTTTGCTAAAGCAAATCATGATATGAACAAAA
1921 ATTACAGGGGACCTGTTTAAGAGAACAAAATGTTCCAAGCACTTTAGGCAGACACCAGCTGTTTGCAAACAATGTGCTAA
2001 TATGCAAATGATGTGCTTATTAAAGGAGGCCCATGGGGCCTCTTATTGGCAATACTTGGCTGTGGGTTACATTAAATATG
2081 TGAACATAGTATGAAGTAGCATCATTTTAGGGTTATTCTGTTACTTAGGGTTTTTGTTTTCTGTTTTTTTTTTCTCTTTT
2161 TTTGTATTTACCGTGCTAGTTCTCTTCTACACCTACTCTGTCTCTCAAGCCATTTTGCCACTCGCTTCCCTGCCATCTGG
2241 CCCTTCCCTTTGTCTCAGTGGGATAGATGGATTGTGAAATGGAATCTCCCAGAACCCCTGCCCTGGCAGCCTGGAAGACC
2321 GTGCCTGCCCAGCCCTCGTCACCACAGGGACTCCTTGGGTCCTGGCAGTGCATGTGCCAGCAGGCAGGACAAACTCTGTG
2401 TACCTGTGCCCAGGTGAATGGGCGCAGGGTCCTCTTGCCCTGTCCTGCGGGGGGCCCCACGAGTTCCTGGCATTCAGCAC
2481 TGCTTAGCATTCTCGGAAGGTTTCTTCAACTGCTTGCTTTTCCCAGGCTTGCCTTTAGTGTCATGTAAGACATTTTTAAG
2561 TTATATTTATTTTGTTGGGTTTTAAAATTGCACAGAACACTAAGACCGAAAGGCTGGACTCTTGTTTCTCCTTGAAAGCT
2641 TTGCCTTTGTTTTGAACTTCCTTTCCCACTTGGTAGAAAGAGCCCAGAAGCAGCCCTGGCCCTGTAAGATGGACTCTTTC
2721 ATCCTTCAGTTGTATTTAGCTTTGAGTTTCTCTGCATCTGTCCACCCCATGTGTATATAACCCAGCCCCTGGCTCTGGGG
2801 TGGTCACCTCGTCAGTGCCTTTTGTTCTGGAGGAGAGGACCCCCCCCGCCTGCCGAGAGGCTCTCTTCCTGTTCTGCACC
2881 CCTCTCCCCATGGGACCTTGGAGAAAACTGAACTGTTACAAACCCCTGCACAGTGCCTGTCAAACAGATGCAAACCTTCC
2961 TGAATAAAGCCTTGGAGACCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accACGUUU-UCAUUAAC---ACCAAAAa 5'
             || |:: :||: |||   || |||| 
Target 5' gctTGGAGGTGGTGTTTGCACTGCTTTTt 3'
172 - 200 126.00 -7.40
2
miRNA  3' accacguuuucAUUAACACCAAAAa 5'
                     || ||  |||||| 
Target 5' ggttattctgtTACTTAGGGTTTTt 3'
2111 - 2135 122.00 -6.60
3
miRNA  3' accacguuuucauuaacaCCAAAAa 5'
                            |||||| 
Target 5' gttatatttattttgttgGGTTTTa 3'
2560 - 2584 120.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30181670 23 COSMIC
COSN26980792 26 COSMIC
COSN28878202 48 COSMIC
COSN30622134 48 COSMIC
COSN30167565 61 COSMIC
COSN31488962 61 COSMIC
COSN26636372 63 COSMIC
COSN31519972 64 COSMIC
COSN30119667 76 COSMIC
COSN30450872 79 COSMIC
COSN31581142 98 COSMIC
COSN30534569 140 COSMIC
COSN31573120 169 COSMIC
COSN6025503 258 COSMIC
COSN31490512 299 COSMIC
COSN31482813 302 COSMIC
COSN23074241 724 COSMIC
COSN16217363 1066 COSMIC
COSN20120058 1466 COSMIC
COSN7206481 1663 COSMIC
COSN8970407 1768 COSMIC
COSN9060745 1841 COSMIC
COSN6445376 1872 COSMIC
COSN31541231 1906 COSMIC
COSN27166317 2098 COSMIC
COSN1434256 2270 COSMIC
COSN8436433 2411 COSMIC
COSN22273092 2424 COSMIC
COSN17610037 2449 COSMIC
COSN31587918 2455 COSMIC
COSN16207353 2539 COSMIC
COSN31527943 2628 COSMIC
COSN31543129 2639 COSMIC
COSN7986367 2732 COSMIC
COSN20096071 2840 COSMIC
COSN8436432 2931 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1037701300 2 dbSNP
rs778909288 4 dbSNP
rs754932102 7 dbSNP
rs753827968 9 dbSNP
rs753469188 10 dbSNP
rs1309352816 16 dbSNP
rs1296149555 17 dbSNP
rs1395419324 20 dbSNP
rs756295431 21 dbSNP
rs1314472031 22 dbSNP
rs1415234024 23 dbSNP
rs373407978 25 dbSNP
rs1222263427 26 dbSNP
rs370287570 27 dbSNP
rs762235303 29 dbSNP
rs1017287789 30 dbSNP
rs1373178604 33 dbSNP
rs774644405 36 dbSNP
rs756058200 38 dbSNP
rs764649139 39 dbSNP
rs763306759 41 dbSNP
rs1486206625 42 dbSNP
rs776065114 45 dbSNP
rs1194321506 47 dbSNP
rs1393881198 63 dbSNP
rs938839791 64 dbSNP
rs1004203519 69 dbSNP
rs1221226813 77 dbSNP
rs1247595665 77 dbSNP
rs887120204 86 dbSNP
rs924756114 87 dbSNP
rs1342154435 88 dbSNP
rs1228793485 92 dbSNP
rs1029675736 93 dbSNP
rs1346342567 96 dbSNP
rs977589687 102 dbSNP
rs1270076336 112 dbSNP
rs775804811 115 dbSNP
rs149753354 118 dbSNP
rs746326555 123 dbSNP
rs946916342 127 dbSNP
rs1400211617 139 dbSNP
rs181903007 142 dbSNP
rs964743020 182 dbSNP
rs1171544307 183 dbSNP
rs1212307705 192 dbSNP
rs1053147395 199 dbSNP
rs1171087721 202 dbSNP
rs1374542644 210 dbSNP
rs1464392689 211 dbSNP
rs1301874741 213 dbSNP
rs1406432783 220 dbSNP
rs1454112969 224 dbSNP
rs1017327372 226 dbSNP
rs934286123 232 dbSNP
rs1363843774 236 dbSNP
rs1425830669 243 dbSNP
rs191801345 249 dbSNP
rs769832944 254 dbSNP
rs529923705 257 dbSNP
rs1325845852 260 dbSNP
rs1474496409 261 dbSNP
rs187219364 262 dbSNP
rs1265413010 264 dbSNP
rs1194744084 268 dbSNP
rs1485469503 269 dbSNP
rs1255599007 272 dbSNP
rs763813438 273 dbSNP
rs1313107622 281 dbSNP
rs770978086 282 dbSNP
rs949789843 283 dbSNP
rs1213297707 285 dbSNP
rs954512129 291 dbSNP
rs750391925 293 dbSNP
rs1279534917 294 dbSNP
rs1470717376 296 dbSNP
rs1156530846 306 dbSNP
rs1218654856 309 dbSNP
rs74139714 313 dbSNP
rs991319437 319 dbSNP
rs962890494 320 dbSNP
rs1037629842 322 dbSNP
rs1016820414 326 dbSNP
rs1226757038 327 dbSNP
rs1267783633 331 dbSNP
rs1317567681 334 dbSNP
rs982680446 337 dbSNP
rs894484674 341 dbSNP
rs1487424334 343 dbSNP
rs1198615798 344 dbSNP
rs1328167629 347 dbSNP
rs747057105 355 dbSNP
rs1425607652 373 dbSNP
rs1481320289 373 dbSNP
rs1400782292 376 dbSNP
rs547568003 377 dbSNP
rs1474892551 391 dbSNP
rs1029624813 392 dbSNP
rs1457803942 398 dbSNP
rs573053725 409 dbSNP
rs1347739466 410 dbSNP
rs998176157 418 dbSNP
rs938752522 419 dbSNP
rs56907962 421 dbSNP
rs565342168 422 dbSNP
rs947561270 423 dbSNP
rs914795025 426 dbSNP
rs1011064029 427 dbSNP
rs893979535 433 dbSNP
rs1483809557 434 dbSNP
rs964387701 435 dbSNP
rs1052679561 436 dbSNP
rs1459492867 443 dbSNP
rs1259216042 451 dbSNP
rs41268731 452 dbSNP
rs902818746 453 dbSNP
rs531713164 456 dbSNP
rs539736262 457 dbSNP
rs754829497 458 dbSNP
rs1428216564 459 dbSNP
rs564208416 466 dbSNP
rs1444570574 491 dbSNP
rs1301347357 492 dbSNP
rs1378506967 496 dbSNP
rs991660277 497 dbSNP
rs993295180 504 dbSNP
rs1315644699 512 dbSNP
rs1361427853 514 dbSNP
rs139459912 515 dbSNP
rs1271962226 527 dbSNP
rs1438217504 537 dbSNP
rs369946940 548 dbSNP
rs147572644 551 dbSNP
rs1460473207 555 dbSNP
rs1444232939 559 dbSNP
rs1402399766 565 dbSNP
rs1013230476 574 dbSNP
rs1386562617 586 dbSNP
rs894422029 594 dbSNP
rs982628071 597 dbSNP
rs372068831 598 dbSNP
rs1405716674 602 dbSNP
rs1453666564 603 dbSNP
rs557329400 610 dbSNP
rs1167240553 611 dbSNP
rs558586842 615 dbSNP
rs1317777511 619 dbSNP
rs1407442826 620 dbSNP
rs1175875104 627 dbSNP
rs1041794829 633 dbSNP
rs537023837 635 dbSNP
rs964423134 636 dbSNP
rs181733648 642 dbSNP
rs1011426159 651 dbSNP
rs1203916468 657 dbSNP
rs942936888 668 dbSNP
rs958193794 675 dbSNP
rs1031183923 680 dbSNP
rs1263162774 694 dbSNP
rs1463183572 696 dbSNP
rs912851567 697 dbSNP
rs1306501457 698 dbSNP
rs1476592527 705 dbSNP
rs1171121698 707 dbSNP
rs987500828 711 dbSNP
rs1223042999 716 dbSNP
rs569345618 718 dbSNP
rs999730476 728 dbSNP
rs906764128 730 dbSNP
rs1400247287 745 dbSNP
rs1237728271 748 dbSNP
rs1327020417 753 dbSNP
rs1432813847 765 dbSNP
rs1281076192 769 dbSNP
rs188236799 775 dbSNP
rs1013892361 790 dbSNP
rs894149212 792 dbSNP
rs1264658051 794 dbSNP
rs1326432183 806 dbSNP
rs536193842 806 dbSNP
rs1284354326 808 dbSNP
rs1440063222 810 dbSNP
rs1055508283 812 dbSNP
rs1016091638 816 dbSNP
rs1295364017 818 dbSNP
rs1268576591 819 dbSNP
rs1458433111 822 dbSNP
rs565920389 831 dbSNP
rs547286347 842 dbSNP
rs1157050500 849 dbSNP
rs1453137320 853 dbSNP
rs1046878222 854 dbSNP
rs929836665 872 dbSNP
rs1387250477 879 dbSNP
rs1402323658 889 dbSNP
rs756136580 899 dbSNP
rs1035615560 904 dbSNP
rs1003252575 912 dbSNP
rs1193635278 913 dbSNP
rs976652524 919 dbSNP
rs113971723 925 dbSNP
rs1333560399 928 dbSNP
rs1237899451 939 dbSNP
rs903207369 940 dbSNP
rs1352257034 947 dbSNP
rs368613148 953 dbSNP
rs139507461 960 dbSNP
rs1291754173 962 dbSNP
rs375036231 967 dbSNP
rs1490612442 969 dbSNP
rs1270027706 974 dbSNP
rs147384105 975 dbSNP
rs989547558 990 dbSNP
rs893254351 993 dbSNP
rs1182828350 1007 dbSNP
rs550329903 1015 dbSNP
rs767095079 1016 dbSNP
rs58216094 1017 dbSNP
rs970898154 1018 dbSNP
rs548380144 1019 dbSNP
rs1425230793 1023 dbSNP
rs561309317 1033 dbSNP
rs1051362961 1043 dbSNP
rs1394101559 1044 dbSNP
rs1286464730 1050 dbSNP
rs1012913157 1060 dbSNP
rs918907744 1061 dbSNP
rs1144838 1066 dbSNP
rs1314963772 1067 dbSNP
rs1360709311 1068 dbSNP
rs1248818775 1082 dbSNP
rs1055858819 1085 dbSNP
rs1249926055 1085 dbSNP
rs527981605 1088 dbSNP
rs888179604 1093 dbSNP
rs560799234 1094 dbSNP
rs570045167 1094 dbSNP
rs1440755254 1096 dbSNP
rs765530935 1102 dbSNP
rs1303270056 1103 dbSNP
rs545288652 1115 dbSNP
rs1182993292 1116 dbSNP
rs183504225 1126 dbSNP
rs929782743 1130 dbSNP
rs1361334929 1132 dbSNP
rs578102747 1134 dbSNP
rs922458172 1138 dbSNP
rs1165433937 1140 dbSNP
rs759901560 1141 dbSNP
rs942622679 1142 dbSNP
rs1461339151 1145 dbSNP
rs911177527 1149 dbSNP
rs3820634 1159 dbSNP
rs936713061 1162 dbSNP
rs1361340298 1168 dbSNP
rs923991496 1169 dbSNP
rs1335419191 1171 dbSNP
rs773432762 1177 dbSNP
rs978187502 1182 dbSNP
rs1455013186 1184 dbSNP
rs1294104577 1185 dbSNP
rs777122832 1195 dbSNP
rs1307256575 1222 dbSNP
rs3738723 1233 dbSNP
rs367774672 1236 dbSNP
rs1253286991 1241 dbSNP
rs1464817243 1252 dbSNP
rs1313557504 1257 dbSNP
rs1379910255 1263 dbSNP
rs1025155335 1266 dbSNP
rs537717016 1275 dbSNP
rs1433311992 1279 dbSNP
rs991036636 1291 dbSNP
rs115633474 1293 dbSNP
rs1489068879 1299 dbSNP
rs1183503581 1301 dbSNP
rs1263379350 1303 dbSNP
rs552310728 1308 dbSNP
rs981401443 1312 dbSNP
rs1414162189 1318 dbSNP
rs180783120 1322 dbSNP
rs758797302 1323 dbSNP
rs1467857458 1324 dbSNP
rs1020230952 1332 dbSNP
rs747589278 1334 dbSNP
rs113734412 1351 dbSNP
rs1257741071 1353 dbSNP
rs1287614463 1354 dbSNP
rs1233865229 1356 dbSNP
rs893180796 1358 dbSNP
rs1025324341 1360 dbSNP
rs1220488305 1364 dbSNP
rs773122150 1365 dbSNP
rs572264642 1370 dbSNP
rs1344061271 1380 dbSNP
rs554002867 1384 dbSNP
rs1264047760 1385 dbSNP
rs538532178 1387 dbSNP
rs1325750070 1391 dbSNP
rs148568530 1393 dbSNP
rs189700932 1394 dbSNP
rs1205665945 1404 dbSNP
rs1265005929 1404 dbSNP
rs1485469154 1404 dbSNP
rs1394691572 1407 dbSNP
rs144827491 1410 dbSNP
rs1303987477 1416 dbSNP
rs942589711 1424 dbSNP
rs1422025490 1426 dbSNP
rs1167932382 1430 dbSNP
rs1478487929 1434 dbSNP
rs3738722 1435 dbSNP
rs1344115448 1438 dbSNP
rs1053721326 1440 dbSNP
rs1186377435 1444 dbSNP
rs1421897721 1455 dbSNP
rs1404789272 1456 dbSNP
rs149442069 1458 dbSNP
rs1200756875 1460 dbSNP
rs1457275211 1461 dbSNP
rs1222297212 1465 dbSNP
rs923937751 1466 dbSNP
rs1256028290 1468 dbSNP
rs755316864 1473 dbSNP
rs1216367124 1475 dbSNP
rs1288131742 1477 dbSNP
rs1489793808 1489 dbSNP
rs527651141 1495 dbSNP
rs949440592 1497 dbSNP
rs937149390 1510 dbSNP
rs1489223107 1514 dbSNP
rs1175152621 1519 dbSNP
rs928470708 1525 dbSNP
rs918044083 1526 dbSNP
rs967262628 1527 dbSNP
rs1424593369 1529 dbSNP
rs749021275 1536 dbSNP
rs1304073951 1538 dbSNP
rs991376109 1544 dbSNP
rs1367871618 1546 dbSNP
rs1297857474 1548 dbSNP
rs1440238525 1548 dbSNP
rs959596999 1550 dbSNP
rs1292956395 1562 dbSNP
rs12120964 1563 dbSNP
rs1225593486 1568 dbSNP
rs1311365024 1573 dbSNP
rs1357106866 1580 dbSNP
rs1245166727 1581 dbSNP
rs990073490 1595 dbSNP
rs985079341 1597 dbSNP
rs957378723 1604 dbSNP
rs1391122229 1608 dbSNP
rs1201980568 1617 dbSNP
rs1398765785 1623 dbSNP
rs539593464 1627 dbSNP
rs1025275021 1630 dbSNP
rs1240743655 1635 dbSNP
rs776873407 1642 dbSNP
rs1006956805 1644 dbSNP
rs544209739 1645 dbSNP
rs900930760 1646 dbSNP
rs1355404049 1647 dbSNP
rs1019385347 1648 dbSNP
rs1449284724 1648 dbSNP
rs1007106007 1649 dbSNP
rs3820633 1650 dbSNP
rs530409368 1653 dbSNP
rs1188029759 1654 dbSNP
rs1438811505 1655 dbSNP
rs1236323548 1658 dbSNP
rs780632290 1661 dbSNP
rs184862451 1663 dbSNP
rs887471184 1664 dbSNP
rs1055893246 1670 dbSNP
rs1458315710 1674 dbSNP
rs937095997 1677 dbSNP
rs544352227 1681 dbSNP
rs1474628620 1687 dbSNP
rs1186226932 1692 dbSNP
rs902465194 1696 dbSNP
rs1420684982 1705 dbSNP
rs928410658 1706 dbSNP
rs1042409754 1707 dbSNP
rs1208070086 1712 dbSNP
rs1405414679 1712 dbSNP
rs949387317 1713 dbSNP
rs1342126965 1725 dbSNP
rs145726672 1728 dbSNP
rs1269330369 1731 dbSNP
rs1239914745 1734 dbSNP
rs192977879 1737 dbSNP
rs990042332 1740 dbSNP
rs1055229825 1752 dbSNP
rs957307151 1756 dbSNP
rs911210514 1761 dbSNP
rs985899682 1762 dbSNP
rs17587821 1767 dbSNP
rs751148721 1782 dbSNP
rs985415673 1783 dbSNP
rs950962364 1788 dbSNP
rs1215731092 1789 dbSNP
rs1403052154 1791 dbSNP
rs1392474194 1807 dbSNP
rs1479035921 1810 dbSNP
rs541943911 1829 dbSNP
rs542278158 1830 dbSNP
rs1428937505 1841 dbSNP
rs1480891376 1842 dbSNP
rs1174336942 1858 dbSNP
rs1382914809 1862 dbSNP
rs1475977612 1866 dbSNP
rs965026136 1871 dbSNP
rs1050492 1872 dbSNP
rs1160449401 1876 dbSNP
rs1280965489 1896 dbSNP
rs762654213 1907 dbSNP
rs1233538776 1908 dbSNP
rs1276057030 1912 dbSNP
rs1017175947 1914 dbSNP
rs1005790739 1916 dbSNP
rs371219683 1923 dbSNP
rs1055459942 1930 dbSNP
rs775673585 1935 dbSNP
rs1032168032 1943 dbSNP
rs1000739515 1958 dbSNP
rs766794480 1959 dbSNP
rs1196873801 1963 dbSNP
rs1490562120 1963 dbSNP
rs1453358999 1964 dbSNP
rs1201320945 1965 dbSNP
rs1268381574 1965 dbSNP
rs1362107149 1968 dbSNP
rs1216149979 1973 dbSNP
rs553214306 1985 dbSNP
rs902412635 1991 dbSNP
rs1241260577 1997 dbSNP
rs1301000278 2002 dbSNP
rs538967038 2004 dbSNP
rs1344957618 2012 dbSNP
rs1045468239 2023 dbSNP
rs1013565381 2026 dbSNP
rs1325160820 2031 dbSNP
rs1333465235 2051 dbSNP
rs1440928789 2056 dbSNP
rs896505189 2058 dbSNP
rs891612129 2059 dbSNP
rs1055581036 2060 dbSNP
rs1244456052 2062 dbSNP
rs938118292 2066 dbSNP
rs1357547012 2071 dbSNP
rs1211834065 2076 dbSNP
rs909324601 2083 dbSNP
rs935925364 2086 dbSNP
rs1437305744 2096 dbSNP
rs1049219909 2099 dbSNP
rs1182527863 2102 dbSNP
rs1240116189 2104 dbSNP
rs1441412474 2112 dbSNP
rs1433731686 2118 dbSNP
rs1144839 2120 dbSNP
rs770326846 2124 dbSNP
rs1384345043 2127 dbSNP
rs985439674 2128 dbSNP
rs919498929 2138 dbSNP
rs1164634982 2142 dbSNP
rs556397892 2144 dbSNP
rs965375300 2145 dbSNP
rs912236042 2152 dbSNP
rs113989266 2153 dbSNP
rs199598117 2153 dbSNP
rs1017102544 2154 dbSNP
rs1491289812 2154 dbSNP
rs577234598 2154 dbSNP
rs953818190 2154 dbSNP
rs959649053 2155 dbSNP
rs1358156538 2156 dbSNP
rs1299821340 2159 dbSNP
rs1460066063 2164 dbSNP
rs1420033805 2166 dbSNP
rs1424409386 2172 dbSNP
rs556945289 2173 dbSNP
rs11577521 2174 dbSNP
rs772211123 2182 dbSNP
rs1189292454 2189 dbSNP
rs966548330 2200 dbSNP
rs1486420214 2202 dbSNP
rs1001177392 2204 dbSNP
rs1171002265 2205 dbSNP
rs906880904 2218 dbSNP
rs185560367 2219 dbSNP
rs1336643436 2223 dbSNP
rs1020861009 2224 dbSNP
rs1398316118 2229 dbSNP
rs761979491 2241 dbSNP
rs750350206 2252 dbSNP
rs1293818179 2258 dbSNP
rs1009927752 2266 dbSNP
rs537490129 2268 dbSNP
rs1055127899 2270 dbSNP
rs1487439246 2273 dbSNP
rs1054214397 2283 dbSNP
rs549471937 2284 dbSNP
rs1203045223 2296 dbSNP
rs1256677416 2297 dbSNP
rs1265551748 2300 dbSNP
rs935835098 2307 dbSNP
rs1259366587 2310 dbSNP
rs889677570 2320 dbSNP
rs1002657358 2321 dbSNP
rs1193919698 2329 dbSNP
rs887851245 2335 dbSNP
rs1277185482 2336 dbSNP
rs1049165509 2337 dbSNP
rs1050121211 2338 dbSNP
rs1175008288 2347 dbSNP
rs1377717559 2351 dbSNP
rs1221419935 2352 dbSNP
rs534014751 2354 dbSNP
rs1384672889 2359 dbSNP
rs768979148 2361 dbSNP
rs1401051546 2369 dbSNP
rs933984894 2374 dbSNP
rs922581214 2376 dbSNP
rs1346588331 2383 dbSNP
rs1283365503 2390 dbSNP
rs1302023305 2391 dbSNP
rs1217421420 2398 dbSNP
rs1235299777 2402 dbSNP
rs972759826 2405 dbSNP
rs568358436 2410 dbSNP
rs1216980661 2420 dbSNP
rs555083037 2423 dbSNP
rs984269431 2424 dbSNP
rs192414053 2431 dbSNP
rs944966110 2437 dbSNP
rs1434448136 2439 dbSNP
rs910833767 2441 dbSNP
rs1033911076 2444 dbSNP
rs1420852564 2445 dbSNP
rs1416106896 2447 dbSNP
rs1364134596 2448 dbSNP
rs1404539221 2449 dbSNP
rs1294393919 2450 dbSNP
rs373405167 2454 dbSNP
rs1170094839 2457 dbSNP
rs982752463 2460 dbSNP
rs144939462 2461 dbSNP
rs1352815910 2467 dbSNP
rs1240812404 2471 dbSNP
rs1023917189 2477 dbSNP
rs932336603 2480 dbSNP
rs891507424 2484 dbSNP
rs924995078 2486 dbSNP
rs1246982963 2489 dbSNP
rs979195461 2494 dbSNP
rs966495733 2495 dbSNP
rs1020808671 2496 dbSNP
rs1236080330 2500 dbSNP
rs1212599370 2508 dbSNP
rs1181099172 2518 dbSNP
rs1383753507 2525 dbSNP
rs1405202898 2537 dbSNP
rs1144840 2539 dbSNP
rs889637519 2549 dbSNP
rs1460667969 2551 dbSNP
rs1049607233 2557 dbSNP
rs998499505 2562 dbSNP
rs1447383832 2564 dbSNP
rs901125727 2569 dbSNP
rs1380290077 2575 dbSNP
rs76708073 2576 dbSNP
rs1290346193 2580 dbSNP
rs142787631 2581 dbSNP
rs1323097602 2584 dbSNP
rs1202045178 2588 dbSNP
rs35705316 2602 dbSNP
rs940008209 2605 dbSNP
rs138286830 2607 dbSNP
rs1002198500 2608 dbSNP
rs45532233 2612 dbSNP
rs926769518 2613 dbSNP
rs1182743901 2622 dbSNP
rs1416435724 2622 dbSNP
rs867106059 2625 dbSNP
rs1426919083 2626 dbSNP
rs1027654258 2628 dbSNP
rs1401093217 2629 dbSNP
rs993549017 2634 dbSNP
rs914157942 2635 dbSNP
rs757255120 2640 dbSNP
rs1447230035 2646 dbSNP
rs1232686120 2654 dbSNP
rs1284530499 2656 dbSNP
rs1381128201 2662 dbSNP
rs1212417935 2667 dbSNP
rs1277246423 2675 dbSNP
rs1317999843 2677 dbSNP
rs1199913241 2679 dbSNP
rs1260727417 2681 dbSNP
rs1442294607 2686 dbSNP
rs1211474192 2703 dbSNP
rs1282227533 2709 dbSNP
rs1485124596 2713 dbSNP
rs955719629 2717 dbSNP
rs1193197052 2720 dbSNP
rs115660647 2739 dbSNP
rs1478926955 2749 dbSNP
rs1174307221 2759 dbSNP
rs1040515582 2764 dbSNP
rs1000335211 2767 dbSNP
rs953850442 2768 dbSNP
rs944892084 2770 dbSNP
rs1334808635 2775 dbSNP
rs1028568073 2777 dbSNP
rs1397988914 2778 dbSNP
rs1297364716 2781 dbSNP
rs1340688748 2793 dbSNP
rs998070092 2793 dbSNP
rs1343721129 2798 dbSNP
rs889361939 2800 dbSNP
rs1051131946 2803 dbSNP
rs932312409 2804 dbSNP
rs924944625 2806 dbSNP
rs979143016 2810 dbSNP
rs150439183 2811 dbSNP
rs913695006 2817 dbSNP
rs1197585561 2820 dbSNP
rs1402535899 2830 dbSNP
rs1171470782 2835 dbSNP
rs1404989687 2836 dbSNP
rs991990002 2837 dbSNP
rs918090502 2839 dbSNP
rs1173088306 2840 dbSNP
rs1183983864 2840 dbSNP
rs1417805393 2841 dbSNP
rs1473307229 2841 dbSNP
rs560142467 2842 dbSNP
rs1360960940 2844 dbSNP
rs866557346 2845 dbSNP
rs544633556 2846 dbSNP
rs777303026 2847 dbSNP
rs11292563 2848 dbSNP
rs1220524002 2848 dbSNP
rs1452415159 2848 dbSNP
rs1491027172 2848 dbSNP
rs3832012 2848 dbSNP
rs547348520 2848 dbSNP
rs1048418238 2849 dbSNP
rs578007306 2854 dbSNP
rs1437700558 2855 dbSNP
rs1056844296 2860 dbSNP
rs1259436011 2862 dbSNP
rs993496562 2863 dbSNP
rs926765868 2869 dbSNP
rs1405608627 2871 dbSNP
rs1204538668 2874 dbSNP
rs756738568 2877 dbSNP
rs556464968 2880 dbSNP
rs1287258816 2883 dbSNP
rs1374068481 2890 dbSNP
rs544442318 2899 dbSNP
rs1046960820 2901 dbSNP
rs1310706104 2916 dbSNP
rs111864741 2917 dbSNP
rs1242988315 2923 dbSNP
rs914127276 2924 dbSNP
rs1019014735 2926 dbSNP
rs1308523028 2930 dbSNP
rs1009037130 2934 dbSNP
rs573911000 2944 dbSNP
rs1378931921 2949 dbSNP
rs555585811 2950 dbSNP
rs534349177 2953 dbSNP
rs1197918159 2957 dbSNP
rs1000864063 2960 dbSNP
rs1238787266 2969 dbSNP
rs551524784 2969 dbSNP
rs1185067459 2971 dbSNP
rs766591369 2975 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 3707.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguuuucauuaacaCCAAAAa 5'
                            |||||| 
Target 5' ------uuuauuuuguugGGUUUUa 3'
1 - 19
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000272117.3 | 3UTR | UUUAUUUUGUUGGGUUUUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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