miRTarBase - #MIRT537154


—
pre-miRNA Information
pre-miRNA hsa-mir-4660   
Genomic Coordinates chr8: 9048445 - 9048518
Description Homo sapiens miR-4660 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4660
Sequence 9| UGCAGCUCUGGUGGAAAAUGGAG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs559566816 2 dbSNP
rs1206645118 3 dbSNP
rs1022883625 18 dbSNP
rs968295961 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GID8   
Synonyms C20orf11, TWA1
Description GID complex subunit 8 homolog
Transcript NM_017896   
Expression
Putative miRNA Targets on GID8
3'UTR of GID8
(miRNA target sites are highlighted)		 
>GID8|NM_017896|3'UTR
   1 CGCCTGCGCTTGCGTGGTGGATCCAACACCAGCCCTGCGTCGTGGGACTTGCCTCAGATCAGCCTGCGACTGCAAGATTC
  81 TTACTGCAGTAGAGAACTCTTTTTCTCCCTTGTACTTTTTTTTGACCTGGCATCTTTTTATAGGGAAAAATGGCCTTTGT
 161 AGGCAGTGGAAAACTTGCAAGGAAAGCTGCCGTCTCTTTGGCAGTCTGATGCAGAGCCTGCACTCTGGCACTCGCTGAAG
 241 AATCTGGAAGGTTGCGGTTTGCTCTTCCAGTGTTCGGGGGCCTCTGGCTGCTGAAGGATTCGGTCTACCACGGAGGGCTG
 321 TGCTGTTAGGCTGCATCCCACTCAAAATACAGGAAAAGCACGAATCATGATTCTGCTTTCTGTTAGCTTAGGCAGACATT
 401 GGGCCTTCACCTACAAGTTTTTCCTTACCCCTGTGGTTTTTGTGTTTTTTTTTTTTTCTTTTTCCATAGGAAAGAATATA
 481 TAAATTTGTAAATCCTAATTCAAAGATGGCTCATGTGTGAGGGCATTGAGTTTGATTTGTTTTCCCTTTGGTCTGGGTTG
 561 TGTGGCTTTTGGGGGATGCGTGTGAGGGGGCTATGTGTTTTTTAATTTTTTAAATATATATTTTGGTGCTGTGTGTGGTA
 641 AGAGACTTGTTCCTAGTGGATCAATGAACCATCTCTTCTGGGCAGTTTTGTTGAAAATAAAGGTTTCTCTTTGATTTCAA
 721 GAATGACCAAAATGGCCTCTAAAAGATGTTAATCATCTCAAATGACCTTTTGTCTTTGGGGCGTTCTTCCCCCTGTGATA
 801 GCGGCAGTGGCTTTTTCTGGTACCTGCAGCTGGAAAGGCCACTTGGCCCTGTGCTGAGTGAGCGGCCTTCATTAGAGCGA
 881 GGCAGCCCTTGGCCGGTGGGGACGCAGAGCCCCAGCAGGTGGTGCACGACTGTTGGCGGAAGGAACGCGTGTTCATCCTC
 961 AGTGATCTGCCCTCCAGCATCTCGGCAGCATCTCATCCTCCATCGTCAGCTGGCTCTGCCGATGTCCTGCTTCTGTTCAC
1041 TCACAGAACTGTCCCCTGCTCCGTGGTGGGCAGGAGGGAAGTGGTGCAGGGCTGCGTGCATTGCCTGCGAGTCGGGACAG
1121 TTGATGGGCACATGGCCTTGTAGCTCTGGGCACAGATGTGTTTGGATTCATTGCAGCGGACCACCGGGCACTGTTGACCC
1201 CACTGAGCAGTGCTAAGTGTTGGTTTAGTGGATGTTCGTGGAATTGCTGACCCATCCAAGGGCGTCCTTTGGAGCCAGTG
1281 GAGCCTGCCGGCGCATCTGAGGGGCAGAATGCTGCTAGCACTTGAATCTGGGATCTCGCCTTATTCTCAAGTAGCAAGGC
1361 ATCTCGACAAGCATGGTCTAGGTCTGGTGGCCAGCTTGCCAGTACCTGAGCCGGTCGGGTCATCTGCCTCTGAGGGACCG
1441 TCCTCACCGAGCTCCTGCATCCCTTGAGTGTTGATCAGGAGGCGTCCACAGCATTGTTCTCGCCTCTGAATGATGCTTCT
1521 TTCTGTGTTGGAGCCTGGCGAAGTTGTGTTTTCAAGCCCTCTACTTCTCTTTCCAGTGGGTAGGAGCTTTTGGCAGTGTT
1601 TACTTTACCTAGATGGCTTATATAATCCAGTAAGAGATGCAAAGATAAAATTGCTGCGGTTGTTACAGAAGCATGGCGGC
1681 CTCCAGACTGACCCATTGGTTGCCCTTTAGATTTTGTAAGGATGCGGTGCTGGGGAGGTGGTGCTTCCCTACCCCCTAGA
1761 AATGCTGCCTTCCAACTACCACTCTCCCAGATGTGACCCTTGCGATTATTTCCTCTGAGGTTTGAGGATGAAGATAAGTT
1841 GGAGGGAAAGAGAGTAACTAATAGGGGATGAAATATAGCAGAAGCTAGAAGAAAGCGGTGAGGTGAGAGAGATGCATCTG
1921 CACGTTTTCTTCAACAGCACCAGGTGATTCAGCATATTCCTAATTACCTTTCACTATTCGTGTATATAAGATCGTTTACT
2001 TGCATAATATATCATCAATTTGACATATTCTTAAAACTAGAGGGTGTGAGAAGCACAGCAATAGGAAGTCTCTCCACAAA
2081 CTAGGGGAACACAAATGGGGTCATTCACGTGCCTGGACTGTCACTATGTGGCTGTCACGTGAAGTGCTGGTGTTGATTTC
2161 CATTTCAGCCAGTGGGTAGCTGATAAGCCAGTGCCAGCATCCAGCATGAGCAGATGTCGGGGAGACTGGGAAGTCTCCAG
2241 CGTTACTGCTCTCCTTCCCTTCATGATAAGCCAGTGCCAGCATCCAGCGTGAGCAGACGTCGGGGAGACTGGGAAGTCTC
2321 CGATGTTACTGCCTGCCTTCCTTTCGTGTGAGGGGCTGCACTTGCTTTTCTTGTGATCTGTTAGTGGACGAGGTCTTCCA
2401 AGGAAGTGCTTTGCACACTTTCTTTGCTCCTTTTTACAGTCTTTGTCTTTGCAGCAAGCAAATGAAATTAAGCCACTTTG
2481 GGATAATGAACATTCAGTATAATTCTACTTTGTCTCATTTTGGATCTCACTGTTGTCTTTATAAAAATGGCACATTTTAC
2561 AAAGTAGTTTATTCTTATTATACTTTCTGCTGGAGAGTGCCTTGAAATAAAATGTGAGAGTATTCTGGTACTCTGTGTTC
2641 CAGATGCATGAAATTGGGTGAGGAATAACCCCTAGTCTGGAATCTTTGTGAAGCATAGGGTTATTGCAAGGCAAATGGGA
2721 ACTAACACATCTTGCCATTTGAATCAGGGTCTCCAGTTTCTAGAAAAGGCAGACACTGGTTGGGACCAAAGTCTCCATGG
2801 CACATGACTGAAGACTGGTGGTCGTGTGTGTGCGGAGTCCACGGAAGCCTCGGGGAGGTGGAGCTGCTCCTTCCATTCCG
2881 TCAGGACGTGATCTGAAAACATGTAGAGAAGATGAGTTGAGGACAGCTTTTCTAAGGCAATGTGATGTCTTTGCTTTCTT
2961 ATTTCTCTTTCTCTGCGTTGTTAGTTTTGAAGAGTGGAGGAGCTAGGGGCTCCAGAAAGAATCTTACACATGTGTTGAAG
3041 ACATTGATGTCATAGGGAGCGGGGAGCTGCATTCCCTTCTGGGCTGTTACTGCTAAATCTCAGTATGAACAGACCAGGCG
3121 GAAAGCTTGGTGGCCAAGCAGTCTGTGTGCTTCCCCGCTGATGGAGAACGTTGCGTTGTTCACAATAGGGCCTCATGGGT
3201 GTAGCCGCATGGCAGACCCATGGCTGGCGCAGCTGCCTGTTGCCGTCTGTCTTCAGTAACTGCTGCTCTGTTAACTGTTC
3281 TATTCTGATACTACGCGTGTTGTTTTTTACAACAGGTATGTTTTTGTTTCAGAAATATGTATTGCTTTTCTCATATTTTT
3361 TGCAAATTGTATTGTCAACATGGGTCATTTAAAGTCCTGTATGAACCATAACCTGCTGTGGTACCTTTGTACATGTTTGA
3441 TTCTGTATTCTTTATTCCAGTGTGGCATATGTGCCCCTCTGTATCTTTTGAGAAGTGCGGAATAGGTTGCTTCTACCACC
3521 TGTTCTTAATGTAACAGTAAAAGTTTTCACATTTTTCTCAGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gagguaaaaggugGUCUCGACGu 5'
                       ::||||||| 
Target 5' agcctcggggaggTGGAGCTGCt 3'
 2846 - 2868 142.00 -14.60
2 
miRNA  3' gagGUAA--AAGGUG------G--UCUCGACGu 5'
             ||||  | :||:      |  :||||||| 
Target 5' agaCATTGATGTCATAGGGAGCGGGGAGCTGCa 3'
 3039 - 3071 142.00 -15.80
3 
miRNA  3' gaGGUA--AAAG-GUGGU-CUCGACGu 5'
            || |  |||| ::: | |:||||| 
Target 5' tgCCTTCCTTTCGTGTGAGGGGCTGCa 3'
 2334 - 2360 135.00 -16.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30496437 2 COSMIC
COSN30139349 15 COSMIC
COSN30157842 25 COSMIC
COSN30127829 36 COSMIC
COSN31603705 65 COSMIC
COSN31557813 95 COSMIC
COSN20579784 100 COSMIC
COSN16787943 263 COSMIC
COSN31591395 276 COSMIC
COSN31583092 313 COSMIC
COSN31533236 360 COSMIC
COSN26584238 376 COSMIC
COSN20116675 458 COSMIC
COSN27505509 458 COSMIC
COSN6422164 459 COSMIC
COSN18988289 473 COSMIC
COSN31588026 528 COSMIC
COSN31481850 529 COSMIC
COSN31593423 593 COSMIC
COSN1879742 708 COSMIC
COSN9147193 720 COSMIC
COSN26566546 810 COSMIC
COSN30695297 850 COSMIC
COSN28886044 944 COSMIC
COSN7102050 984 COSMIC
COSN30693448 996 COSMIC
COSN8346011 1339 COSMIC
COSN22677990 1466 COSMIC
COSN20116678 1477 COSMIC
COSN20872860 1671 COSMIC
COSN5135049 1678 COSMIC
COSN2503517 1957 COSMIC
COSN16362339 1973 COSMIC
COSN21996299 3491 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1160021645 1 dbSNP
rs1406462886 2 dbSNP
rs530362657 2 dbSNP
rs147612583 3 dbSNP
rs778149125 7 dbSNP
rs758768938 8 dbSNP
rs780395081 9 dbSNP
rs747573540 10 dbSNP
rs1489039149 12 dbSNP
rs1248802340 13 dbSNP
rs548855024 14 dbSNP
rs1463086734 15 dbSNP
rs1215463747 17 dbSNP
rs1187254043 21 dbSNP
rs1389591940 22 dbSNP
rs377117487 25 dbSNP
rs191003145 26 dbSNP
rs369511130 27 dbSNP
rs1049483696 28 dbSNP
rs772752501 29 dbSNP
rs1490798120 32 dbSNP
rs779710393 33 dbSNP
rs1260133776 34 dbSNP
rs748878813 39 dbSNP
rs374031120 40 dbSNP
rs748875130 41 dbSNP
rs1363748313 42 dbSNP
rs759591079 43 dbSNP
rs1271564443 45 dbSNP
rs1365606760 46 dbSNP
rs1342489964 47 dbSNP
rs73918873 50 dbSNP
rs74631156 51 dbSNP
rs77192236 52 dbSNP
rs1434249421 54 dbSNP
rs1427784148 56 dbSNP
rs570630882 58 dbSNP
rs941229660 61 dbSNP
rs1346262062 68 dbSNP
rs1208945741 69 dbSNP
rs768068985 80 dbSNP
rs1486597082 81 dbSNP
rs897004297 85 dbSNP
rs1312715420 89 dbSNP
rs1276901720 95 dbSNP
rs1282321291 97 dbSNP
rs1231849900 109 dbSNP
rs1448412152 113 dbSNP
rs1216857982 116 dbSNP
rs994073505 133 dbSNP
rs991156305 134 dbSNP
rs1027340741 142 dbSNP
rs1288367018 143 dbSNP
rs888443556 143 dbSNP
rs1012698369 146 dbSNP
rs1466563569 149 dbSNP
rs1045888823 161 dbSNP
rs1172283766 162 dbSNP
rs538384169 165 dbSNP
rs1391156948 167 dbSNP
rs935486899 169 dbSNP
rs534768903 171 dbSNP
rs367816697 179 dbSNP
rs982200930 193 dbSNP
rs558310071 200 dbSNP
rs1483269221 204 dbSNP
rs957112053 217 dbSNP
rs989734246 218 dbSNP
rs1170635299 220 dbSNP
rs771226145 220 dbSNP
rs1346950179 221 dbSNP
rs112957399 223 dbSNP
rs1229252112 224 dbSNP
rs899822773 227 dbSNP
rs76420082 235 dbSNP
rs535422089 241 dbSNP
rs1360065407 246 dbSNP
rs150928928 257 dbSNP
rs1304985477 258 dbSNP
rs1311656647 262 dbSNP
rs1371641809 276 dbSNP
rs1414703567 276 dbSNP
rs575401449 277 dbSNP
rs1169275041 279 dbSNP
rs1423935500 282 dbSNP
rs545823576 287 dbSNP
rs910893605 291 dbSNP
rs1185797083 296 dbSNP
rs1485304472 298 dbSNP
rs943760019 299 dbSNP
rs777037502 301 dbSNP
rs896973189 302 dbSNP
rs929828960 303 dbSNP
rs1479512136 310 dbSNP
rs1048301406 312 dbSNP
rs888403139 313 dbSNP
rs1337131516 314 dbSNP
rs1291516148 317 dbSNP
rs1016737352 319 dbSNP
rs1351674962 321 dbSNP
rs1331418038 325 dbSNP
rs557750824 341 dbSNP
rs1396194885 344 dbSNP
rs572994726 362 dbSNP
rs1267399275 363 dbSNP
rs1419480628 368 dbSNP
rs1162187944 369 dbSNP
rs540315722 372 dbSNP
rs17421774 384 dbSNP
rs915617837 388 dbSNP
rs949731913 391 dbSNP
rs1249554594 395 dbSNP
rs1210146689 396 dbSNP
rs76376514 399 dbSNP
rs924366966 400 dbSNP
rs1031116790 405 dbSNP
rs1418058798 406 dbSNP
rs1281831367 410 dbSNP
rs1237500979 412 dbSNP
rs1052558097 415 dbSNP
rs1302414522 417 dbSNP
rs1443486000 419 dbSNP
rs1396251806 423 dbSNP
rs775409577 426 dbSNP
rs62200664 429 dbSNP
rs947005710 430 dbSNP
rs1011530535 437 dbSNP
rs1022463379 441 dbSNP
rs11479536 445 dbSNP
rs1193220520 445 dbSNP
rs1468539564 445 dbSNP
rs76488945 445 dbSNP
rs797013832 445 dbSNP
rs879225164 445 dbSNP
rs80205989 446 dbSNP
rs1203394340 447 dbSNP
rs77671348 447 dbSNP
rs910864140 448 dbSNP
rs1025568687 449 dbSNP
rs1257049989 450 dbSNP
rs1236997686 452 dbSNP
rs1300865517 458 dbSNP
rs1369193946 458 dbSNP
rs200921740 458 dbSNP
rs202229840 459 dbSNP
rs1326585923 460 dbSNP
rs1308933140 465 dbSNP
rs1351104468 466 dbSNP
rs1000222345 467 dbSNP
rs1174156611 469 dbSNP
rs1029635550 481 dbSNP
rs976459363 487 dbSNP
rs1265574040 495 dbSNP
rs1393026324 497 dbSNP
rs1173317270 504 dbSNP
rs918366394 505 dbSNP
rs1243997306 507 dbSNP
rs929824374 511 dbSNP
rs202186935 513 dbSNP
rs1052826 514 dbSNP
rs867040615 516 dbSNP
rs1280073023 520 dbSNP
rs909727566 542 dbSNP
rs1339684874 552 dbSNP
rs991426455 558 dbSNP
rs1428095669 572 dbSNP
rs947925126 580 dbSNP
rs1022873569 581 dbSNP
rs1373476048 584 dbSNP
rs201776574 586 dbSNP
rs1410271612 594 dbSNP
rs1425189776 598 dbSNP
rs1236106687 614 dbSNP
rs751740408 618 dbSNP
rs570492732 621 dbSNP
rs955993674 629 dbSNP
rs1003577993 631 dbSNP
rs762141433 634 dbSNP
rs1399295887 639 dbSNP
rs1052849 643 dbSNP
rs1466571108 647 dbSNP
rs1484985923 647 dbSNP
rs1205699537 651 dbSNP
rs989852536 656 dbSNP
rs1274746423 670 dbSNP
rs1052517647 672 dbSNP
rs748990414 675 dbSNP
rs915451258 682 dbSNP
rs767411150 685 dbSNP
rs1331155008 690 dbSNP
rs946869762 700 dbSNP
rs1039962063 708 dbSNP
rs528596026 719 dbSNP
rs546678399 722 dbSNP
rs1312153576 732 dbSNP
rs185188757 738 dbSNP
rs1442709695 740 dbSNP
rs1356040161 749 dbSNP
rs1010997220 753 dbSNP
rs1022857354 755 dbSNP
rs1339451527 756 dbSNP
rs750313653 757 dbSNP
rs921528328 758 dbSNP
rs542652866 764 dbSNP
rs1318576066 774 dbSNP
rs1474244710 783 dbSNP
rs550461552 784 dbSNP
rs1178262892 792 dbSNP
rs1197915410 794 dbSNP
rs1255984317 802 dbSNP
rs1007746521 803 dbSNP
rs145849742 804 dbSNP
rs1204179867 809 dbSNP
rs1457050392 812 dbSNP
rs1273367403 813 dbSNP
rs539715542 824 dbSNP
rs1019182803 825 dbSNP
rs1224258478 833 dbSNP
rs1375341816 834 dbSNP
rs1257144258 841 dbSNP
rs1423422262 848 dbSNP
rs965007995 849 dbSNP
rs1185562339 852 dbSNP
rs1425843653 861 dbSNP
rs557814188 863 dbSNP
rs1051537503 864 dbSNP
rs11548328 865 dbSNP
rs377123793 866 dbSNP
rs1326142667 867 dbSNP
rs951170897 869 dbSNP
rs1207313464 872 dbSNP
rs1247968313 873 dbSNP
rs761815844 879 dbSNP
rs909685874 880 dbSNP
rs947894276 884 dbSNP
rs1160560956 888 dbSNP
rs1245174923 891 dbSNP
rs756095048 893 dbSNP
rs533922566 895 dbSNP
rs1038442977 896 dbSNP
rs1454947078 897 dbSNP
rs1429645279 902 dbSNP
rs765295991 904 dbSNP
rs780086924 905 dbSNP
rs1387902097 906 dbSNP
rs898359262 907 dbSNP
rs1309716989 908 dbSNP
rs1319774430 909 dbSNP
rs1328870973 910 dbSNP
rs1052827788 911 dbSNP
rs1435259957 913 dbSNP
rs1318683393 914 dbSNP
rs1283532925 915 dbSNP
rs1347712600 917 dbSNP
rs1227006844 922 dbSNP
rs1268050258 927 dbSNP
rs41282992 928 dbSNP
rs946767489 929 dbSNP
rs1022771408 932 dbSNP
rs1287758625 933 dbSNP
rs1289533552 936 dbSNP
rs1451110785 938 dbSNP
rs1043840337 939 dbSNP
rs889269359 940 dbSNP
rs1435781762 941 dbSNP
rs754440177 947 dbSNP
rs573614423 948 dbSNP
rs542427059 949 dbSNP
rs1454204549 950 dbSNP
rs1160258698 952 dbSNP
rs191182219 955 dbSNP
rs1387868947 957 dbSNP
rs563706368 959 dbSNP
rs1303367994 961 dbSNP
rs1367127584 962 dbSNP
rs1215798039 963 dbSNP
rs1408356357 970 dbSNP
rs1348412051 971 dbSNP
rs989883533 972 dbSNP
rs778299323 973 dbSNP
rs1336751655 976 dbSNP
rs1282210676 977 dbSNP
rs575562374 984 dbSNP
rs546075790 985 dbSNP
rs1296509209 987 dbSNP
rs576985428 988 dbSNP
rs975571177 993 dbSNP
rs1210578166 995 dbSNP
rs921403809 998 dbSNP
rs781572409 999 dbSNP
rs1415929349 1003 dbSNP
rs1025706141 1005 dbSNP
rs1204732345 1006 dbSNP
rs1250746544 1010 dbSNP
rs2427452 1012 dbSNP
rs984261059 1013 dbSNP
rs755580539 1021 dbSNP
rs118026793 1022 dbSNP
rs749003582 1025 dbSNP
rs1386687207 1028 dbSNP
rs1427372945 1032 dbSNP
rs770682112 1033 dbSNP
rs1397583048 1036 dbSNP
rs1485968599 1037 dbSNP
rs1393553815 1044 dbSNP
rs781504694 1045 dbSNP
rs1208500063 1054 dbSNP
rs1462804437 1055 dbSNP
rs969206487 1058 dbSNP
rs898598120 1059 dbSNP
rs1340439038 1063 dbSNP
rs1246774894 1064 dbSNP
rs1277650398 1066 dbSNP
rs1233912486 1073 dbSNP
rs1317186405 1076 dbSNP
rs980560165 1082 dbSNP
rs115641380 1086 dbSNP
rs1227863568 1087 dbSNP
rs1252125052 1088 dbSNP
rs1395861703 1088 dbSNP
rs1480830268 1091 dbSNP
rs1298461481 1092 dbSNP
rs1463206192 1094 dbSNP
rs1397609599 1095 dbSNP
rs183350454 1096 dbSNP
rs939218743 1097 dbSNP
rs745682847 1100 dbSNP
rs187643228 1101 dbSNP
rs746280024 1105 dbSNP
rs568936390 1109 dbSNP
rs771846619 1110 dbSNP
rs1197260181 1112 dbSNP
rs946766949 1114 dbSNP
rs775297129 1115 dbSNP
rs1171240135 1125 dbSNP
rs1401968120 1127 dbSNP
rs1453951762 1128 dbSNP
rs1257608817 1131 dbSNP
rs770167439 1134 dbSNP
rs760658149 1135 dbSNP
rs1337012322 1136 dbSNP
rs1434540771 1138 dbSNP
rs539784795 1141 dbSNP
rs1309527993 1142 dbSNP
rs1271892998 1146 dbSNP
rs1229315181 1147 dbSNP
rs1253978095 1153 dbSNP
rs1244698413 1154 dbSNP
rs889240028 1156 dbSNP
rs191905916 1157 dbSNP
rs545716559 1163 dbSNP
rs566726089 1165 dbSNP
rs766617651 1166 dbSNP
rs1261966087 1169 dbSNP
rs1429874489 1172 dbSNP
rs371969687 1173 dbSNP
rs1377358683 1174 dbSNP
rs1470514649 1175 dbSNP
rs555031003 1178 dbSNP
rs565449513 1179 dbSNP
rs573704854 1180 dbSNP
rs1255733044 1185 dbSNP
rs964433756 1186 dbSNP
rs183231016 1187 dbSNP
rs1028949366 1200 dbSNP
rs142349939 1209 dbSNP
rs188345097 1211 dbSNP
rs1005254062 1218 dbSNP
rs11557369 1222 dbSNP
rs1237854825 1225 dbSNP
rs575422509 1231 dbSNP
rs1418681610 1238 dbSNP
rs546133752 1239 dbSNP
rs2427453 1252 dbSNP
rs1352070656 1256 dbSNP
rs1262978869 1259 dbSNP
rs1237381390 1264 dbSNP
rs980527712 1265 dbSNP
rs1292869765 1273 dbSNP
rs1441173034 1282 dbSNP
rs1034825891 1286 dbSNP
rs1280297066 1289 dbSNP
rs940230406 1289 dbSNP
rs866234279 1290 dbSNP
rs960553060 1291 dbSNP
rs768726293 1293 dbSNP
rs192577220 1294 dbSNP
rs913853235 1295 dbSNP
rs946705954 1307 dbSNP
rs540637830 1311 dbSNP
rs979418474 1314 dbSNP
rs974070325 1324 dbSNP
rs1377980661 1326 dbSNP
rs1198292847 1334 dbSNP
rs762125083 1336 dbSNP
rs561907188 1338 dbSNP
rs1488204832 1339 dbSNP
rs919888926 1341 dbSNP
rs1239671837 1349 dbSNP
rs943428167 1351 dbSNP
rs1236875133 1355 dbSNP
rs1349628367 1360 dbSNP
rs1272675923 1364 dbSNP
rs3746756 1366 dbSNP
rs923425751 1367 dbSNP
rs1320287845 1371 dbSNP
rs1044485180 1372 dbSNP
rs1398078259 1375 dbSNP
rs1222312612 1381 dbSNP
rs1265384674 1389 dbSNP
rs561424004 1396 dbSNP
rs938516813 1398 dbSNP
rs1180934680 1407 dbSNP
rs1423379069 1410 dbSNP
rs562720335 1413 dbSNP
rs887995099 1414 dbSNP
rs530468282 1417 dbSNP
rs1038011366 1418 dbSNP
rs760503284 1423 dbSNP
rs549500190 1439 dbSNP
rs770373600 1440 dbSNP
rs766088323 1441 dbSNP
rs1034796433 1448 dbSNP
rs1021253614 1449 dbSNP
rs1199522794 1450 dbSNP
rs960813788 1452 dbSNP
rs1271445290 1457 dbSNP
rs1009440399 1458 dbSNP
rs147806663 1463 dbSNP
rs1339799670 1464 dbSNP
rs996352201 1466 dbSNP
rs551562741 1475 dbSNP
rs3842444 1476 dbSNP
rs750550204 1476 dbSNP
rs954581689 1477 dbSNP
rs1331849643 1479 dbSNP
rs1333832791 1481 dbSNP
rs1410748828 1485 dbSNP
rs141243651 1491 dbSNP
rs527558221 1500 dbSNP
rs1398833729 1501 dbSNP
rs1399262192 1502 dbSNP
rs548991998 1502 dbSNP
rs979772093 1503 dbSNP
rs754927856 1507 dbSNP
rs1419259994 1509 dbSNP
rs910529975 1513 dbSNP
rs964707920 1519 dbSNP
rs961628666 1520 dbSNP
rs1237272171 1523 dbSNP
rs1182913061 1526 dbSNP
rs974311627 1528 dbSNP
rs567138463 1534 dbSNP
rs537988805 1535 dbSNP
rs1259547028 1537 dbSNP
rs1228986438 1539 dbSNP
rs929464232 1540 dbSNP
rs763162977 1541 dbSNP
rs555980128 1548 dbSNP
rs1235051575 1549 dbSNP
rs1047856786 1556 dbSNP
rs1283393364 1558 dbSNP
rs1201056751 1564 dbSNP
rs1337785542 1567 dbSNP
rs78745194 1568 dbSNP
rs942270927 1570 dbSNP
rs1044690656 1573 dbSNP
rs1167112417 1581 dbSNP
rs539653128 1582 dbSNP
rs928750389 1591 dbSNP
rs1001903672 1592 dbSNP
rs1056222152 1594 dbSNP
rs1180812976 1595 dbSNP
rs1413646647 1604 dbSNP
rs1410968030 1609 dbSNP
rs1478797240 1622 dbSNP
rs1176376499 1623 dbSNP
rs1171298894 1629 dbSNP
rs1399376445 1631 dbSNP
rs1253082718 1632 dbSNP
rs752244977 1635 dbSNP
rs896196457 1637 dbSNP
rs766782122 1639 dbSNP
rs1319876426 1646 dbSNP
rs1289008264 1651 dbSNP
rs1463879962 1652 dbSNP
rs182310792 1658 dbSNP
rs543099326 1659 dbSNP
rs1446329513 1660 dbSNP
rs1371928329 1663 dbSNP
rs891597614 1667 dbSNP
rs1349852383 1672 dbSNP
rs1000721950 1678 dbSNP
rs186579917 1679 dbSNP
rs540549381 1681 dbSNP
rs964675811 1687 dbSNP
rs976095973 1693 dbSNP
rs1438706668 1695 dbSNP
rs1279404284 1699 dbSNP
rs75935652 1706 dbSNP
rs1395257857 1707 dbSNP
rs1317789067 1710 dbSNP
rs1030294919 1716 dbSNP
rs192693745 1726 dbSNP
rs983958225 1727 dbSNP
rs1442689012 1736 dbSNP
rs1208975087 1737 dbSNP
rs1005003466 1738 dbSNP
rs1348910226 1742 dbSNP
rs1015802262 1744 dbSNP
rs1217596334 1750 dbSNP
rs1366985116 1755 dbSNP
rs909362673 1756 dbSNP
rs866867511 1757 dbSNP
rs1402398209 1759 dbSNP
rs1193684220 1765 dbSNP
rs1422857934 1774 dbSNP
rs1476777794 1775 dbSNP
rs573948677 1778 dbSNP
rs1435681834 1781 dbSNP
rs995785610 1782 dbSNP
rs60335373 1784 dbSNP
rs1431010559 1786 dbSNP
rs1423861000 1787 dbSNP
rs1186534693 1789 dbSNP
rs1478775965 1791 dbSNP
rs1260881522 1793 dbSNP
rs970688432 1794 dbSNP
rs1485861721 1795 dbSNP
rs1258043649 1797 dbSNP
rs553212885 1799 dbSNP
rs1208272046 1802 dbSNP
rs774636378 1804 dbSNP
rs573474444 1805 dbSNP
rs545247363 1806 dbSNP
rs759223781 1814 dbSNP
rs756405475 1821 dbSNP
rs1056109382 1824 dbSNP
rs1401941020 1827 dbSNP
rs1278091661 1845 dbSNP
rs551871512 1849 dbSNP
rs1340490357 1851 dbSNP
rs542565168 1859 dbSNP
rs1304296691 1863 dbSNP
rs896154254 1866 dbSNP
rs945121937 1868 dbSNP
rs1042555268 1871 dbSNP
rs565500133 1877 dbSNP
rs988848481 1881 dbSNP
rs767201925 1897 dbSNP
rs903674081 1898 dbSNP
rs913091133 1905 dbSNP
rs780298200 1913 dbSNP
rs1042840588 1916 dbSNP
rs1483062459 1920 dbSNP
rs1218938921 1924 dbSNP
rs1017474479 1925 dbSNP
rs1200649196 1927 dbSNP
rs1355350780 1929 dbSNP
rs8117710 1930 dbSNP
rs1051446579 1933 dbSNP
rs890107283 1935 dbSNP
rs1395766517 1945 dbSNP
rs1445264192 1947 dbSNP
rs997399995 1952 dbSNP
rs1448422591 1954 dbSNP
rs1397490887 1958 dbSNP
rs1247142625 1960 dbSNP
rs1030307396 1963 dbSNP
rs1458363924 1969 dbSNP
rs373329707 1969 dbSNP
rs1162473794 1974 dbSNP
rs769113459 1980 dbSNP
rs774462588 1981 dbSNP
rs1159378887 1992 dbSNP
rs1359963348 1994 dbSNP
rs995688253 1995 dbSNP
rs1359114760 1998 dbSNP
rs879554450 1999 dbSNP
rs1264172153 2012 dbSNP
rs1244576026 2017 dbSNP
rs1317879710 2019 dbSNP
rs372443190 2025 dbSNP
rs970339750 2026 dbSNP
rs1002160144 2029 dbSNP
rs1330124483 2030 dbSNP
rs549000401 2032 dbSNP
rs554795763 2044 dbSNP
rs1301657144 2054 dbSNP
rs2039 2059 dbSNP
rs190230171 2062 dbSNP
rs1379874350 2063 dbSNP
rs549707725 2067 dbSNP
rs1453378086 2069 dbSNP
rs1347926689 2075 dbSNP
rs1211044191 2077 dbSNP
rs1290531724 2082 dbSNP
rs1450922444 2083 dbSNP
rs945068044 2086 dbSNP
rs921725698 2088 dbSNP
rs1238372289 2091 dbSNP
rs1191556068 2093 dbSNP
rs571023021 2105 dbSNP
rs1042133476 2108 dbSNP
rs903641739 2109 dbSNP
rs1239748470 2110 dbSNP
rs1441837241 2112 dbSNP
rs538318302 2113 dbSNP
rs111822768 2114 dbSNP
rs138036423 2115 dbSNP
rs1468679553 2118 dbSNP
rs59280738 2119 dbSNP
rs1299840950 2120 dbSNP
rs1417597611 2121 dbSNP
rs1392125447 2125 dbSNP
rs1405262443 2132 dbSNP
rs1036003057 2134 dbSNP
rs1479085152 2139 dbSNP
rs1324360513 2140 dbSNP
rs1198175968 2149 dbSNP
rs898936144 2151 dbSNP
rs1214963471 2157 dbSNP
rs1488156570 2164 dbSNP
rs11557368 2170 dbSNP
rs1200674446 2172 dbSNP
rs1030691298 2177 dbSNP
rs79895121 2181 dbSNP
rs1447891502 2189 dbSNP
rs1048565481 2190 dbSNP
rs886432840 2196 dbSNP
rs906019199 2197 dbSNP
rs1001833701 2198 dbSNP
rs574234954 2202 dbSNP
rs544297591 2207 dbSNP
rs1397973805 2208 dbSNP
rs1005331812 2209 dbSNP
rs766181273 2219 dbSNP
rs371131385 2220 dbSNP
rs1400271959 2222 dbSNP
rs1172103042 2231 dbSNP
rs556569616 2239 dbSNP
rs1034494706 2240 dbSNP
rs1192115166 2241 dbSNP
rs578165558 2243 dbSNP
rs149965918 2245 dbSNP
rs193158544 2246 dbSNP
rs560431742 2247 dbSNP
rs1276030623 2252 dbSNP
rs1197717472 2253 dbSNP
rs1259989865 2254 dbSNP
rs1028863478 2256 dbSNP
rs953313705 2257 dbSNP
rs138810225 2259 dbSNP
rs1449901220 2261 dbSNP
rs1338969861 2267 dbSNP
rs542758479 2271 dbSNP
rs561032562 2275 dbSNP
rs1333733263 2277 dbSNP
rs1447690683 2287 dbSNP
rs1402544457 2288 dbSNP
rs531597040 2290 dbSNP
rs776355171 2295 dbSNP
rs550267495 2299 dbSNP
rs1165402603 2300 dbSNP
rs940566462 2302 dbSNP
rs1475201908 2303 dbSNP
rs936399718 2304 dbSNP
rs1038781549 2305 dbSNP
rs549387058 2310 dbSNP
rs141982032 2322 dbSNP
rs759485541 2323 dbSNP
rs1437194115 2324 dbSNP
rs1290471531 2325 dbSNP
rs1393929315 2333 dbSNP
rs373371868 2340 dbSNP
rs886315793 2345 dbSNP
rs1045213319 2346 dbSNP
rs3746755 2347 dbSNP
rs937518188 2348 dbSNP
rs185066643 2355 dbSNP
rs113282906 2358 dbSNP
rs1318449901 2360 dbSNP
rs1355313443 2361 dbSNP
rs1217819688 2365 dbSNP
rs1001602644 2366 dbSNP
rs1479810935 2370 dbSNP
rs1159564325 2379 dbSNP
rs1439942776 2386 dbSNP
rs1381732240 2387 dbSNP
rs1176280879 2389 dbSNP
rs1010409266 2390 dbSNP
rs1202385382 2390 dbSNP
rs534139144 2391 dbSNP
rs549521737 2394 dbSNP
rs1223671577 2398 dbSNP
rs1020274928 2411 dbSNP
rs1290779375 2417 dbSNP
rs1485392163 2418 dbSNP
rs567887080 2419 dbSNP
rs1185830704 2420 dbSNP
rs904527047 2429 dbSNP
rs370969536 2440 dbSNP
rs34334590 2442 dbSNP
rs1276621259 2444 dbSNP
rs1434959839 2456 dbSNP
rs1034462611 2457 dbSNP
rs1299221106 2468 dbSNP
rs1029480532 2482 dbSNP
rs953462740 2488 dbSNP
rs1156449298 2489 dbSNP
rs1418074106 2495 dbSNP
rs987730796 2497 dbSNP
rs1478414623 2500 dbSNP
rs1192372256 2502 dbSNP
rs545484556 2509 dbSNP
rs1018743334 2513 dbSNP
rs1268047793 2517 dbSNP
rs960189997 2533 dbSNP
rs1371687224 2536 dbSNP
rs971968711 2540 dbSNP
rs1467319468 2541 dbSNP
rs1172804008 2543 dbSNP
rs920298211 2548 dbSNP
rs879041253 2550 dbSNP
rs559103413 2552 dbSNP
rs968001365 2562 dbSNP
rs979053912 2569 dbSNP
rs1279361152 2575 dbSNP
rs146307808 2578 dbSNP
rs1338901874 2579 dbSNP
rs578064927 2582 dbSNP
rs957727033 2583 dbSNP
rs1452627429 2584 dbSNP
rs751156742 2588 dbSNP
rs1233625998 2615 dbSNP
rs1428582867 2616 dbSNP
rs572623271 2619 dbSNP
rs1478724303 2635 dbSNP
rs1347371550 2641 dbSNP
rs921723855 2642 dbSNP
rs1260782485 2646 dbSNP
rs1208865994 2649 dbSNP
rs1483717005 2658 dbSNP
rs1288225323 2669 dbSNP
rs1239397948 2672 dbSNP
rs895979397 2676 dbSNP
rs1322904414 2685 dbSNP
rs77509962 2686 dbSNP
rs756921100 2688 dbSNP
rs554307859 2696 dbSNP
rs1041930925 2701 dbSNP
rs57252212 2710 dbSNP
rs1396934464 2712 dbSNP
rs780466000 2713 dbSNP
rs904559504 2716 dbSNP
rs1304201970 2717 dbSNP
rs1449918176 2718 dbSNP
rs1000619885 2720 dbSNP
rs1170702738 2728 dbSNP
rs754199094 2734 dbSNP
rs1467140738 2738 dbSNP
rs755492976 2747 dbSNP
rs181212894 2749 dbSNP
rs1435293406 2750 dbSNP
rs139593250 2752 dbSNP
rs1169528042 2755 dbSNP
rs1424151235 2767 dbSNP
rs1037649389 2770 dbSNP
rs1416299289 2772 dbSNP
rs899151791 2777 dbSNP
rs1238885728 2788 dbSNP
rs1200556935 2796 dbSNP
rs889204394 2810 dbSNP
rs1001570055 2816 dbSNP
rs117087072 2817 dbSNP
rs755228807 2823 dbSNP
rs1310941743 2824 dbSNP
rs895867523 2825 dbSNP
rs1014350405 2830 dbSNP
rs549304372 2834 dbSNP
rs1291560768 2835 dbSNP
rs1394306504 2836 dbSNP
rs1027560290 2843 dbSNP
rs141895124 2844 dbSNP
rs1369985408 2847 dbSNP
rs772218932 2852 dbSNP
rs926275085 2856 dbSNP
rs1381110157 2864 dbSNP
rs1287056185 2865 dbSNP
rs1369576395 2866 dbSNP
rs1180633420 2871 dbSNP
rs1387164470 2879 dbSNP
rs1250512423 2881 dbSNP
rs1300291248 2883 dbSNP
rs778055170 2888 dbSNP
rs564579742 2889 dbSNP
rs771098012 2894 dbSNP
rs946203687 2895 dbSNP
rs1358333281 2896 dbSNP
rs1041842349 2901 dbSNP
rs926227332 2901 dbSNP
rs1333469065 2903 dbSNP
rs1215084394 2906 dbSNP
rs1259508820 2907 dbSNP
rs1305593763 2907 dbSNP
rs957696581 2909 dbSNP
rs1489731919 2913 dbSNP
rs936230703 2914 dbSNP
rs530310843 2923 dbSNP
rs1214252682 2925 dbSNP
rs1361467829 2929 dbSNP
rs1160667570 2943 dbSNP
rs1451811442 2945 dbSNP
rs1028622785 2948 dbSNP
rs954583087 2950 dbSNP
rs889115286 2956 dbSNP
rs1435454217 2958 dbSNP
rs1009436426 2962 dbSNP
rs566412376 2963 dbSNP
rs1199202356 2966 dbSNP
rs1488812810 2972 dbSNP
rs987256723 2977 dbSNP
rs534987536 2978 dbSNP
rs1259657931 2982 dbSNP
rs150657225 2988 dbSNP
rs11905085 2990 dbSNP
rs1281276357 3006 dbSNP
rs1404170965 3019 dbSNP
rs973308981 3021 dbSNP
rs769662647 3025 dbSNP
rs920552542 3028 dbSNP
rs1002118421 3030 dbSNP
rs1173274450 3031 dbSNP
rs1384476492 3031 dbSNP
rs529769854 3033 dbSNP
rs775340895 3034 dbSNP
rs1427881173 3035 dbSNP
rs1392010585 3037 dbSNP
rs1265816026 3044 dbSNP
rs1191427326 3048 dbSNP
rs1444959803 3052 dbSNP
rs937245697 3057 dbSNP
rs139924382 3061 dbSNP
rs1200585333 3062 dbSNP
rs556270827 3067 dbSNP
rs1374269423 3072 dbSNP
rs1055772612 3077 dbSNP
rs1318447763 3087 dbSNP
rs149850969 3096 dbSNP
rs567834463 3112 dbSNP
rs1428348907 3117 dbSNP
rs762893756 3118 dbSNP
rs147964773 3119 dbSNP
rs1397925537 3120 dbSNP
rs140280752 3120 dbSNP
rs1336101315 3121 dbSNP
rs571924690 3127 dbSNP
rs1466624762 3128 dbSNP
rs539041671 3136 dbSNP
rs1166562284 3137 dbSNP
rs1475278979 3152 dbSNP
rs1246153060 3155 dbSNP
rs185433215 3157 dbSNP
rs188240110 3158 dbSNP
rs1000406723 3170 dbSNP
rs763582978 3171 dbSNP
rs180692666 3176 dbSNP
rs1202439423 3177 dbSNP
rs572467376 3186 dbSNP
rs1275000933 3190 dbSNP
rs1212643341 3195 dbSNP
rs966412042 3196 dbSNP
rs977563550 3199 dbSNP
rs531992607 3207 dbSNP
rs997067646 3209 dbSNP
rs1314501882 3210 dbSNP
rs926092076 3214 dbSNP
rs1175018847 3220 dbSNP
rs1403152618 3221 dbSNP
rs1355237525 3229 dbSNP
rs936287271 3230 dbSNP
rs1165306931 3233 dbSNP
rs1424394583 3236 dbSNP
rs1164134389 3240 dbSNP
rs1415502362 3243 dbSNP
rs1028591796 3246 dbSNP
rs1439755125 3253 dbSNP
rs1234594664 3259 dbSNP
rs1202357705 3266 dbSNP
rs910566930 3269 dbSNP
rs1290359027 3281 dbSNP
rs1331744051 3286 dbSNP
rs944712303 3287 dbSNP
rs9503 3295 dbSNP
rs987614637 3296 dbSNP
rs761498576 3297 dbSNP
rs554500459 3298 dbSNP
rs1442137506 3300 dbSNP
rs1332138765 3301 dbSNP
rs897914118 3303 dbSNP
rs929340175 3311 dbSNP
rs767128137 3315 dbSNP
rs78934648 3332 dbSNP
rs1363394283 3338 dbSNP
rs1014712125 3339 dbSNP
rs887614769 3344 dbSNP
rs1409542413 3345 dbSNP
rs144163674 3346 dbSNP
rs1293231812 3349 dbSNP
rs1469595124 3359 dbSNP
rs1247186474 3364 dbSNP
rs1201383898 3368 dbSNP
rs543358526 3372 dbSNP
rs1033585675 3377 dbSNP
rs1220888146 3378 dbSNP
rs558439428 3379 dbSNP
rs1306615103 3381 dbSNP
rs920436025 3382 dbSNP
rs76867610 3383 dbSNP
rs1282275433 3386 dbSNP
rs937214615 3392 dbSNP
rs565434246 3402 dbSNP
rs3746754 3403 dbSNP
rs1285736075 3413 dbSNP
rs1403554108 3414 dbSNP
rs1186540865 3416 dbSNP
rs1345275594 3419 dbSNP
rs573390666 3434 dbSNP
rs779430023 3445 dbSNP
rs1346558420 3448 dbSNP
rs979145882 3449 dbSNP
rs1399596996 3461 dbSNP
rs753239317 3463 dbSNP
rs1425863131 3464 dbSNP
rs1033635212 3474 dbSNP
rs1478745592 3476 dbSNP
rs573104379 3496 dbSNP
rs1267935613 3499 dbSNP
rs1054522889 3500 dbSNP
rs1486994058 3507 dbSNP
rs957542767 3520 dbSNP
rs1044628 3526 dbSNP
rs1409677837 3528 dbSNP
rs1265009280 3531 dbSNP
rs1222232839 3533 dbSNP
rs1323386338 3535 dbSNP
rs1279266221 3537 dbSNP
rs986818366 3547 dbSNP
rs1363703534 3549 dbSNP
rs910818293 3550 dbSNP
rs1168614150 3552 dbSNP
rs529787479 3555 dbSNP
rs3180449 3562 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 54994.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gagguaaaaggugGUCUCGACgu 5'
                       ::||||||  
Target 5' agccucggggaggUGGAGCUG-- 3'
 		2 - 22
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000266069.3 | 3UTR | AAGCCUCGGGGAGGUGGAGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
73 hsa-miR-4660 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT064842 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT090784 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT163239 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT214144 LMNB1 lamin B1 2 2
MIRT292479 ZNF507 zinc finger protein 507 2 2
MIRT306038 SKIL SKI like proto-oncogene 2 2
MIRT310459 REST RE1 silencing transcription factor 2 2
MIRT329710 SCD stearoyl-CoA desaturase 2 2
MIRT457833 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 2
MIRT460747 SRP14 signal recognition particle 14 2 2
MIRT461545 ACTR3B ARP3 actin related protein 3 homolog B 2 4
MIRT486956 HLA-B major histocompatibility complex, class I, B 2 2
MIRT487933 HLA-C major histocompatibility complex, class I, C 2 2
MIRT490515 LIMD1 LIM domains containing 1 2 2
MIRT492314 SETD1B SET domain containing 1B 2 2
MIRT501513 PPTC7 PTC7 protein phosphatase homolog 2 6
MIRT504616 PLK1 polo like kinase 1 2 2
MIRT505714 SESN2 sestrin 2 2 2
MIRT506199 PHF19 PHD finger protein 19 2 2
MIRT506827 KIF23 kinesin family member 23 2 6
MIRT512815 ARRDC2 arrestin domain containing 2 2 4
MIRT527014 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2 4
MIRT528520 SLC1A7 solute carrier family 1 member 7 2 2
MIRT531346 PLEKHG4B pleckstrin homology and RhoGEF domain containing G4B 2 2
MIRT537154 GID8 GID complex subunit 8 homolog 2 2
MIRT541104 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT543397 DROSHA drosha ribonuclease III 2 2
MIRT551860 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT554775 RHEBP1 RHEB pseudogene 1 2 4
MIRT556479 LIPA lipase A, lysosomal acid type 2 2
MIRT556662 KMT2D lysine methyltransferase 2D 2 4
MIRT558213 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558819 CDCA4 cell division cycle associated 4 2 4
MIRT559142 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT560981 ZNF333 zinc finger protein 333 2 2
MIRT562066 KLHL15 kelch like family member 15 2 2
MIRT564703 ZNF322P1 zinc finger protein 322 pseudogene 1 2 2
MIRT565904 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566320 POTEM POTE ankyrin domain family member M 2 2
MIRT566331 POTEG POTE ankyrin domain family member G 2 2
MIRT575253 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT609975 HERPUD2 HERPUD family member 2 2 2
MIRT614318 C1orf220 chromosome 1 open reading frame 220 2 2
MIRT618784 AGTRAP angiotensin II receptor associated protein 2 2
MIRT619894 NPTXR neuronal pentraxin receptor 2 2
MIRT631517 CTBS chitobiase 2 2
MIRT640707 MRS2 MRS2, magnesium transporter 2 2
MIRT642218 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT654661 PSMG1 proteasome assembly chaperone 1 2 2
MIRT663725 GLUL glutamate-ammonia ligase 2 2
MIRT690653 RPF2 ribosome production factor 2 homolog 2 2
MIRT703189 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT705896 ADCY9 adenylate cyclase 9 2 2
MIRT706984 XPO5 exportin 5 2 2
MIRT710566 KIAA1958 KIAA1958 2 2
MIRT712526 CYTH2 cytohesin 2 2 2
MIRT714072 RUNDC3B RUN domain containing 3B 2 2
MIRT716299 PAX1 paired box 1 2 2
MIRT716748 C19orf24 chromosome 19 open reading frame 24 2 2
MIRT716933 FAM13A family with sequence similarity 13 member A 2 2
MIRT717344 RAB40A RAB40A, member RAS oncogene family 2 2
MIRT717387 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT718298 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT718569 SLC25A22 solute carrier family 25 member 22 2 2
MIRT718642 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718690 BTBD9 BTB domain containing 9 2 2
MIRT719650 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT721035 TRIM67 tripartite motif containing 67 2 2
MIRT721130 TLK1 tousled like kinase 1 2 2
MIRT722968 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723114 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT723708 RNF166 ring finger protein 166 2 2
MIRT736594 MAFG MAF bZIP transcription factor G 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4660 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4660 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4660 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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