miRTarBase - #MIRT537291


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pre-miRNA Information
pre-miRNA hsa-mir-5691   
Genomic Coordinates chr11: 9090312 - 9090379
Description Homo sapiens miR-5691 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5691
Sequence 9| UUGCUCUGAGCUCCGAGAAAGC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1042238449 3 dbSNP
rs554804494 11 dbSNP
rs1172229307 13 dbSNP
rs112511786 14 dbSNP
Putative Targets

Gene Information
Gene Symbol G3BP1   
Synonyms G3BP, HDH-VIII
Description G3BP stress granule assembly factor 1
Transcript NM_005754   
Other Transcripts NM_198395   
Expression
Putative miRNA Targets on G3BP1
3'UTR of G3BP1
(miRNA target sites are highlighted)		 
>G3BP1|NM_005754|3'UTR
   1 ATCTTCATGGATCTTCATGCAGCCATACAAACCCTGGTTCCAACAGAATGGTGAATTTTCGACAGCCTTTGGTATCTTGG
  81 AGTATGACCCCAGTCTGTTATAAACTGCTTAAGTTTGTATAATTTTACTTTTTTTGTGTGTTAATGGTGTGTGCTCCCTC
 161 TCCCTCTCTTCCCTTTCCTGACCTTTAGTCTTTCACTTCCAATTTTGTGGAATGATATTTTAGGAATAACGGACTTTTAA
 241 AGAAGCAAAAAAAAAGACTGAATTTCCTTGCTTACTTTGCATATACAGACTGGATTTTTTTTTTTTTTTTACAGCCATTT
 321 CCCCAAAGGAATGTCTTGCATATTACTGACATTTGGTATGTTTCATTCATTGGAATATTTCTTATTTTCTACGTGTTTGA
 401 AAAGCCTGTAAGAAATACAGGATTTGATAATATTTTGAAGGCAGGAAAAACCCAAATTGTTTCTTCTTTGAGAGTCATGA
 481 CTACCTTCTGGTGTGGAGAAATTGCCATTGGAAAATTTGACAATTTTGATTCTCACTGGTATGTTTAAAAACTGAATAAA
 561 AGGAATAGAATTTTTTTTTGATAAAGGATCACAAAACAATTCTAAAACCTAACTGTTTTTACCATTGAAATTTAAATTGT
 641 GATAATAGGTTTTAAATGTCTAGAATGCAACTGATAGGCTTTTCTTGAACTGTTAGTTTTTTTGAAGTAGTTTTTTCATG
 721 TTTAATTTGTATTTGTAAAAAAACAAAAAGCAAAAAAATTCCCAAAACCCAGATAACAACCAGAGCAAAACTGTTGTGCC
 801 TTCTATTTATCTTTGATTTCAGTCTTGGCAATTGTTTAAAAAAAAAATCTAGATTTGTTTTATTAGGTTCAGAGTATGTG
 881 GGGAATTATAGAATCCCTCTTTCATCACTTTGTGTATGTCTTTTGTTAACATATTTGTTATGCCTTATTCTAAAATTGAG
 961 TCTCAAACTGGAATGCCTTTGAAGACAGATGCTTCTATAGAGGTTCTTTGACCTAAATAGTTCAGCATTTGTATTTTTAT
1041 TCTGGTATCTAATCAGATTCCTAATCATAGCCCGTAAGAAGGAATGTTACTTTAATATTGGACTTTGCTCATGTGCTCGT
1121 GTCCGCATTTTTTTTTTTCTTAAAATCATAGCCATATGGTAAATTTTCTATTTTGTTATGGTTCTCTTTTATTGATGGGC
1201 ATGCAGTGGGTGTTACTTGGAAATGGCCAATTTTTATTAAAATATTTCTGGAAGAAAATTTAAAAAAAAAAAAAAAAAAA
1281 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgAAAGAGCCUCGAGUCUCGUu 5'
            ||| |: | |:||||||:| 
Target 5' gtTTTATTAG-GTTCAGAGTAt 3'
 857 - 877 147.00 -13.90
2 
miRNA  3' cgaaagagccucgaGUCUCGUu 5'
                        ||||||| 
Target 5' acccagataacaacCAGAGCAa 3'
 767 - 788 140.00 -10.90
3 
miRNA  3' cgaaAGAGCCUCGAGUCUCGUu 5'
              |:| | | ||::|||:| 
Target 5' agccTTTGGTATCTTGGAGTAt 3'
 64 - 85 114.00 -12.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN508356 14 COSMIC
COSN30520992 63 COSMIC
COSN30755639 64 COSMIC
COSN20054148 83 COSMIC
COSN31556998 128 COSMIC
COSN30616962 136 COSMIC
COSN20102099 256 COSMIC
COSN20102103 311 COSMIC
COSN31568435 416 COSMIC
COSN30175631 580 COSMIC
COSN31541941 848 COSMIC
COSN6584160 919 COSMIC
COSN6867890 963 COSMIC
COSN20091288 1074 COSMIC
COSN26649558 1075 COSMIC
COSN4612077 1075 COSMIC
COSN27836106 1120 COSMIC
COSN31551427 1131 COSMIC
COSN31594752 1179 COSMIC
COSN31570650 1208 COSMIC
COSN26668473 1216 COSMIC
COSN32062702 1755 COSMIC
COSN19581666 1775 COSMIC
COSN7880752 1887 COSMIC
COSN27905605 1917 COSMIC
COSN6867891 2252 COSMIC
COSN2076962 2346 COSMIC
COSN7880753 2560 COSMIC
COSN29593995 2710 COSMIC
COSN2076963 3029 COSMIC
COSN27050441 3392 COSMIC
COSN5592198 3454 COSMIC
COSN2076964 3844 COSMIC
COSN21784693 4436 COSMIC
COSN7880754 4497 COSMIC
COSN25753041 4633 COSMIC
COSN4844429 5443 COSMIC
COSN6867893 5555 COSMIC
COSN23780037 6134 COSMIC
COSN17806264 6284 COSMIC
COSN29328640 6710 COSMIC
COSN20320277 7002 COSMIC
COSN16488719 7370 COSMIC
COSN16480984 7371 COSMIC
COSN27616087 7537 COSMIC
COSN27484560 7549 COSMIC
COSN24365874 7556 COSMIC
COSN21986910 7726 COSMIC
COSN15864855 7749 COSMIC
COSN23874223 8477 COSMIC
COSN2076965 8573 COSMIC
rs1062177 1050 GWAS
rs12522670 1782 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765766728 1 dbSNP
rs771910711 2 dbSNP
rs1208111228 6 dbSNP
rs1254109098 8 dbSNP
rs775227433 10 dbSNP
rs558305306 11 dbSNP
rs376029690 12 dbSNP
rs36012237 13 dbSNP
rs1487214373 20 dbSNP
rs1395703317 21 dbSNP
rs777216922 22 dbSNP
rs1425439798 30 dbSNP
rs762275704 31 dbSNP
rs765742482 32 dbSNP
rs773515000 33 dbSNP
rs763289717 35 dbSNP
rs1300644181 38 dbSNP
rs370640834 41 dbSNP
rs751711130 42 dbSNP
rs1437234914 45 dbSNP
rs755078540 46 dbSNP
rs373226920 47 dbSNP
rs1217747401 48 dbSNP
rs752794674 50 dbSNP
rs1354550838 52 dbSNP
rs1420490074 61 dbSNP
rs1263365643 62 dbSNP
rs1485064271 67 dbSNP
rs1184718517 72 dbSNP
rs1370733969 76 dbSNP
rs185362943 77 dbSNP
rs1158399688 79 dbSNP
rs1286804124 81 dbSNP
rs1241526139 83 dbSNP
rs1329528226 97 dbSNP
rs1298983248 109 dbSNP
rs1378851618 113 dbSNP
rs1478447737 127 dbSNP
rs868713127 130 dbSNP
rs1304808016 140 dbSNP
rs1417335167 143 dbSNP
rs1421835802 144 dbSNP
rs1158638238 152 dbSNP
rs1158220229 168 dbSNP
rs1299047139 194 dbSNP
rs1455060867 197 dbSNP
rs1375552614 203 dbSNP
rs1198629406 210 dbSNP
rs1375026386 211 dbSNP
rs766231217 231 dbSNP
rs114869305 232 dbSNP
rs1488244958 235 dbSNP
rs921204417 238 dbSNP
rs1448648874 239 dbSNP
rs1232264209 240 dbSNP
rs1278805031 243 dbSNP
rs1491340574 245 dbSNP
rs1241970703 246 dbSNP
rs1491520290 246 dbSNP
rs1050474191 247 dbSNP
rs1171571298 247 dbSNP
rs1339721197 247 dbSNP
rs140252175 247 dbSNP
rs890441065 248 dbSNP
rs1168942171 251 dbSNP
rs527753489 252 dbSNP
rs1286313886 253 dbSNP
rs1346654461 256 dbSNP
rs1195458416 258 dbSNP
rs944808511 259 dbSNP
rs1255752736 261 dbSNP
rs1204614297 262 dbSNP
rs552687074 266 dbSNP
rs1462822427 268 dbSNP
rs1264818767 278 dbSNP
rs1216547618 281 dbSNP
rs1317246472 282 dbSNP
rs1270659349 284 dbSNP
rs1228984936 291 dbSNP
rs1198268722 293 dbSNP
rs1329753301 295 dbSNP
rs1332922214 295 dbSNP
rs1378514070 295 dbSNP
rs764968969 295 dbSNP
rs866018268 306 dbSNP
rs1443568492 308 dbSNP
rs892512821 311 dbSNP
rs1421621156 312 dbSNP
rs1181726584 313 dbSNP
rs1236825021 315 dbSNP
rs1441955239 318 dbSNP
rs1184254223 332 dbSNP
rs570983923 339 dbSNP
rs1446724952 341 dbSNP
rs1236533242 350 dbSNP
rs1011086075 357 dbSNP
rs538240186 370 dbSNP
rs1394753580 379 dbSNP
rs577575444 385 dbSNP
rs777415253 385 dbSNP
rs1197547026 394 dbSNP
rs568694016 397 dbSNP
rs1402994554 400 dbSNP
rs768220645 405 dbSNP
rs535774223 419 dbSNP
rs1330603597 420 dbSNP
rs1384582155 427 dbSNP
rs1374502374 429 dbSNP
rs1306545937 434 dbSNP
rs113229184 446 dbSNP
rs190609744 450 dbSNP
rs546016932 452 dbSNP
rs1309673068 456 dbSNP
rs1404139308 460 dbSNP
rs1330200481 479 dbSNP
rs1164322897 484 dbSNP
rs752312696 485 dbSNP
rs142884355 489 dbSNP
rs1345129431 493 dbSNP
rs1015305353 507 dbSNP
rs962408654 517 dbSNP
rs1194690753 524 dbSNP
rs1183690472 529 dbSNP
rs973952302 543 dbSNP
rs1290893084 544 dbSNP
rs763548609 551 dbSNP
rs1360902953 558 dbSNP
rs575775659 559 dbSNP
rs1459461669 560 dbSNP
rs932616370 565 dbSNP
rs1373568779 567 dbSNP
rs1281691818 569 dbSNP
rs1252750492 571 dbSNP
rs1434706024 571 dbSNP
rs987117370 571 dbSNP
rs1431725932 582 dbSNP
rs151085013 583 dbSNP
rs944689171 591 dbSNP
rs1426642968 593 dbSNP
rs1358769210 594 dbSNP
rs1158123711 597 dbSNP
rs1378361302 603 dbSNP
rs140125212 609 dbSNP
rs892565245 614 dbSNP
rs1160115086 616 dbSNP
rs1476879338 621 dbSNP
rs1398074408 623 dbSNP
rs946759241 635 dbSNP
rs1043923276 647 dbSNP
rs1490818855 653 dbSNP
rs757720408 654 dbSNP
rs1384808832 659 dbSNP
rs1317167367 687 dbSNP
rs1285870368 694 dbSNP
rs931505784 694 dbSNP
rs1323206722 702 dbSNP
rs1035684542 704 dbSNP
rs561531070 707 dbSNP
rs573852641 715 dbSNP
rs1288381814 720 dbSNP
rs1431492159 725 dbSNP
rs1015190897 737 dbSNP
rs1347213182 737 dbSNP
rs1414101125 738 dbSNP
rs962461591 744 dbSNP
rs1331286742 746 dbSNP
rs1176880853 750 dbSNP
rs1217527992 752 dbSNP
rs1275738338 757 dbSNP
rs781546036 759 dbSNP
rs974217664 763 dbSNP
rs1320694729 770 dbSNP
rs1207643458 779 dbSNP
rs1460573766 785 dbSNP
rs193138070 789 dbSNP
rs1028194456 792 dbSNP
rs1316603880 792 dbSNP
rs1295447460 794 dbSNP
rs1487716021 798 dbSNP
rs183706018 800 dbSNP
rs533137484 801 dbSNP
rs954013238 806 dbSNP
rs986610593 826 dbSNP
rs200497080 838 dbSNP
rs912488212 838 dbSNP
rs988156746 839 dbSNP
rs1352718213 841 dbSNP
rs913884896 846 dbSNP
rs946810701 847 dbSNP
rs188372633 848 dbSNP
rs1443649724 864 dbSNP
rs1428108033 875 dbSNP
rs1206006676 890 dbSNP
rs926850713 894 dbSNP
rs1251087437 898 dbSNP
rs1425853846 903 dbSNP
rs1309778187 909 dbSNP
rs1310742082 913 dbSNP
rs1245263498 915 dbSNP
rs1383803925 925 dbSNP
rs938186755 932 dbSNP
rs1056607440 933 dbSNP
rs1370968202 938 dbSNP
rs1297360535 943 dbSNP
rs551648836 950 dbSNP
rs1171318043 959 dbSNP
rs181143980 966 dbSNP
rs1161143858 978 dbSNP
rs756414791 979 dbSNP
rs1423416809 987 dbSNP
rs1385503912 991 dbSNP
rs1036686855 993 dbSNP
rs1437404175 994 dbSNP
rs1250336506 998 dbSNP
rs1178128888 1013 dbSNP
rs1481914287 1014 dbSNP
rs1295040508 1019 dbSNP
rs898160684 1024 dbSNP
rs995308927 1034 dbSNP
rs1028495884 1046 dbSNP
rs760997900 1046 dbSNP
rs1238294267 1049 dbSNP
rs1062177 1050 dbSNP
rs1008489770 1051 dbSNP
rs550099086 1063 dbSNP
rs1391695599 1069 dbSNP
rs1019433876 1074 dbSNP
rs1218648457 1075 dbSNP
rs955963118 1086 dbSNP
rs1365705767 1094 dbSNP
rs1164932123 1099 dbSNP
rs1312657942 1102 dbSNP
rs988713008 1104 dbSNP
rs1160294032 1111 dbSNP
rs1247495931 1111 dbSNP
rs913938237 1112 dbSNP
rs568382683 1113 dbSNP
rs115455853 1119 dbSNP
rs769011855 1120 dbSNP
rs979423320 1122 dbSNP
rs774505897 1125 dbSNP
rs1271220023 1126 dbSNP
rs1482122948 1128 dbSNP
rs879695914 1128 dbSNP
rs938086872 1128 dbSNP
rs918073887 1139 dbSNP
rs3207820 1140 dbSNP
rs1187261850 1154 dbSNP
rs1346054199 1155 dbSNP
rs868156734 1157 dbSNP
rs1379959380 1164 dbSNP
rs940312903 1164 dbSNP
rs1421968404 1167 dbSNP
rs1383829602 1171 dbSNP
rs1289036283 1179 dbSNP
rs1037245267 1180 dbSNP
rs1176150972 1182 dbSNP
rs1481081797 1186 dbSNP
rs1432004638 1196 dbSNP
rs1191162671 1202 dbSNP
rs547753607 1209 dbSNP
rs1368828974 1211 dbSNP
rs1262493704 1241 dbSNP
rs1207162704 1252 dbSNP
rs1460148897 1266 dbSNP
rs898714906 1270 dbSNP
rs1418795537 1279 dbSNP
rs1324192037 1281 dbSNP
rs1156469125 1283 dbSNP
rs995043381 1287 dbSNP
rs1362008185 1295 dbSNP
rs754374897 1296 dbSNP
rs76469960 1299 dbSNP
rs1400108722 1301 dbSNP
rs142576896 1308 dbSNP
rs1295637106 1313 dbSNP
rs1028926267 1316 dbSNP
rs1383626506 1317 dbSNP
rs375495132 1324 dbSNP
rs1336496091 1335 dbSNP
rs1470467149 1341 dbSNP
rs995586193 1349 dbSNP
rs557941889 1350 dbSNP
rs1475357520 1352 dbSNP
rs746199626 1354 dbSNP
rs889550722 1355 dbSNP
rs1007957407 1360 dbSNP
rs1019486262 1361 dbSNP
rs148628918 1362 dbSNP
rs1461564085 1365 dbSNP
rs987155977 1367 dbSNP
rs1018616504 1369 dbSNP
rs1251442116 1374 dbSNP
rs1021554191 1375 dbSNP
rs968635941 1376 dbSNP
rs956704085 1377 dbSNP
rs1313864357 1387 dbSNP
rs575685519 1388 dbSNP
rs914942842 1396 dbSNP
rs946919328 1399 dbSNP
rs980882857 1413 dbSNP
rs1327267265 1414 dbSNP
rs926900942 1416 dbSNP
rs1235795946 1433 dbSNP
rs1482275888 1440 dbSNP
rs939592593 1443 dbSNP
rs959750236 1447 dbSNP
rs992197195 1451 dbSNP
rs1446635958 1452 dbSNP
rs1183533128 1454 dbSNP
rs1056424778 1455 dbSNP
rs377729117 1459 dbSNP
rs1179375275 1463 dbSNP
rs887111703 1467 dbSNP
rs939975871 1483 dbSNP
rs1038460740 1504 dbSNP
rs898544349 1507 dbSNP
rs994688592 1510 dbSNP
rs1356709861 1511 dbSNP
rs536768794 1515 dbSNP
rs1290364365 1518 dbSNP
rs555309859 1519 dbSNP
rs573541907 1521 dbSNP
rs1246346601 1527 dbSNP
rs1278161608 1529 dbSNP
rs1441851969 1534 dbSNP
rs146903121 1535 dbSNP
rs889072578 1539 dbSNP
rs545442553 1547 dbSNP
rs1174815475 1548 dbSNP
rs1356923721 1562 dbSNP
rs1467069468 1567 dbSNP
rs185743777 1581 dbSNP
rs1019240931 1583 dbSNP
rs956408597 1586 dbSNP
rs1009619739 1587 dbSNP
rs1022064496 1592 dbSNP
rs1184314457 1596 dbSNP
rs1489838841 1598 dbSNP
rs1267631210 1608 dbSNP
rs1303956171 1613 dbSNP
rs1376762884 1616 dbSNP
rs968184663 1620 dbSNP
rs943802344 1625 dbSNP
rs1281649019 1631 dbSNP
rs980935035 1637 dbSNP
rs868447923 1651 dbSNP
rs772249142 1660 dbSNP
rs1351911608 1664 dbSNP
rs1290563015 1665 dbSNP
rs559682244 1675 dbSNP
rs960984282 1680 dbSNP
rs992372217 1694 dbSNP
rs1345418908 1695 dbSNP
rs1218865240 1700 dbSNP
rs776408085 1702 dbSNP
rs564034133 1703 dbSNP
rs1276686933 1706 dbSNP
rs1010086254 1708 dbSNP
rs1401476655 1710 dbSNP
rs1408532901 1715 dbSNP
rs908752374 1722 dbSNP
rs1021445551 1725 dbSNP
rs1479425205 1726 dbSNP
rs1428432089 1727 dbSNP
rs1199556273 1731 dbSNP
rs1489147897 1733 dbSNP
rs1239839037 1734 dbSNP
rs904462408 1739 dbSNP
rs1001447185 1749 dbSNP
rs1210843283 1754 dbSNP
rs1263710282 1755 dbSNP
rs940048434 1758 dbSNP
rs1196576347 1759 dbSNP
rs759555278 1763 dbSNP
rs1202100610 1765 dbSNP
rs369043356 1766 dbSNP
rs570127374 1766 dbSNP
rs959399672 1766 dbSNP
rs1221034637 1769 dbSNP
rs1360009760 1774 dbSNP
rs12522670 1782 dbSNP
rs932707465 1783 dbSNP
rs961411678 1793 dbSNP
rs972892235 1794 dbSNP
rs1050292414 1799 dbSNP
rs1405294266 1800 dbSNP
rs931584362 1806 dbSNP
rs1434432359 1809 dbSNP
rs10036616 1811 dbSNP
rs1416852225 1823 dbSNP
rs1185417626 1824 dbSNP
rs910917170 1825 dbSNP
rs1008703003 1838 dbSNP
rs1249427152 1845 dbSNP
rs79344665 1847 dbSNP
rs531800704 1851 dbSNP
rs139354829 1853 dbSNP
rs1212943968 1863 dbSNP
rs1022365853 1868 dbSNP
rs967806136 1883 dbSNP
rs1272398309 1892 dbSNP
rs1215172842 1903 dbSNP
rs945761350 1904 dbSNP
rs1273316812 1906 dbSNP
rs763744425 1907 dbSNP
rs1219925489 1908 dbSNP
rs367668173 1912 dbSNP
rs1317281702 1915 dbSNP
rs1196668661 1925 dbSNP
rs1259837458 1929 dbSNP
rs1352632520 1934 dbSNP
rs960867778 1939 dbSNP
rs1429778385 1945 dbSNP
rs1391654125 1946 dbSNP
rs777877408 1954 dbSNP
rs529271104 1961 dbSNP
rs1438195358 1965 dbSNP
rs992705204 1966 dbSNP
rs904348711 1974 dbSNP
rs1183909151 1976 dbSNP
rs1479948722 1977 dbSNP
rs1001898336 1984 dbSNP
rs1220506427 1985 dbSNP
rs1034275433 1986 dbSNP
rs908811347 1987 dbSNP
rs961908487 1992 dbSNP
rs1013556303 1993 dbSNP
rs1489246113 2002 dbSNP
rs974127352 2005 dbSNP
rs1313174745 2012 dbSNP
rs1397491395 2015 dbSNP
rs1422287203 2025 dbSNP
rs1371127869 2027 dbSNP
rs1024905864 2034 dbSNP
rs1173477447 2035 dbSNP
rs1371909349 2066 dbSNP
rs961463277 2069 dbSNP
rs1423624511 2072 dbSNP
rs1368621039 2075 dbSNP
rs1167395078 2078 dbSNP
rs1417653592 2081 dbSNP
rs1407688776 2083 dbSNP
rs1178327036 2095 dbSNP
rs1484320965 2098 dbSNP
rs370647715 2102 dbSNP
rs932602237 2106 dbSNP
rs1049849718 2110 dbSNP
rs912623911 2126 dbSNP
rs944541820 2127 dbSNP
rs761216817 2128 dbSNP
rs1314958705 2134 dbSNP
rs1305982612 2138 dbSNP
rs985992710 2145 dbSNP
rs892412503 2158 dbSNP
rs1300756413 2160 dbSNP
rs945278835 2170 dbSNP
rs547813483 2171 dbSNP
rs559986463 2174 dbSNP
rs747239907 2175 dbSNP
rs965596492 2175 dbSNP
rs1043437974 2181 dbSNP
rs903531139 2183 dbSNP
rs1437436906 2189 dbSNP
rs1297735902 2197 dbSNP
rs1473864464 2204 dbSNP
rs912890460 2225 dbSNP
rs1198827576 2227 dbSNP
rs1338523415 2229 dbSNP
rs945813896 2236 dbSNP
rs1203650936 2238 dbSNP
rs1485660863 2245 dbSNP
rs565995621 2253 dbSNP
rs1001790011 2296 dbSNP
rs188880165 2301 dbSNP
rs925656876 2313 dbSNP
rs181853090 2324 dbSNP
rs551531125 2330 dbSNP
rs1209051788 2332 dbSNP
rs1033401646 2336 dbSNP
rs1339960171 2337 dbSNP
rs1227581654 2338 dbSNP
rs937200185 2347 dbSNP
rs1222802723 2355 dbSNP
rs1331222342 2359 dbSNP
rs896215077 2361 dbSNP
rs1380230111 2367 dbSNP
rs186937868 2376 dbSNP
rs78617602 2380 dbSNP
rs1459117145 2381 dbSNP
rs1046408818 2393 dbSNP
rs1176393757 2398 dbSNP
rs1466973979 2399 dbSNP
rs897152983 2411 dbSNP
rs116832343 2417 dbSNP
rs1487037743 2421 dbSNP
rs1428149992 2426 dbSNP
rs1248842059 2427 dbSNP
rs1195158685 2435 dbSNP
rs1189008133 2437 dbSNP
rs1466126528 2444 dbSNP
rs1027072429 2446 dbSNP
rs1199869862 2447 dbSNP
rs1345615084 2451 dbSNP
rs150301968 2453 dbSNP
rs1007072802 2459 dbSNP
rs1297811929 2469 dbSNP
rs1436794982 2471 dbSNP
rs1381091378 2474 dbSNP
rs1336477540 2477 dbSNP
rs1397179648 2479 dbSNP
rs1472743474 2482 dbSNP
rs755899067 2493 dbSNP
rs116200464 2494 dbSNP
rs1362672047 2495 dbSNP
rs1461505663 2515 dbSNP
rs553013812 2518 dbSNP
rs1416403890 2520 dbSNP
rs1425616058 2522 dbSNP
rs954041640 2523 dbSNP
rs1158287493 2529 dbSNP
rs1170760074 2530 dbSNP
rs985437501 2534 dbSNP
rs976994158 2538 dbSNP
rs1443007048 2539 dbSNP
rs373948247 2548 dbSNP
rs577961093 2548 dbSNP
rs1401969379 2549 dbSNP
rs780506233 2550 dbSNP
rs1319040559 2552 dbSNP
rs137967955 2554 dbSNP
rs912939672 2561 dbSNP
rs967037424 2562 dbSNP
rs1447196725 2566 dbSNP
rs557156991 2574 dbSNP
rs1230242894 2577 dbSNP
rs1356803903 2583 dbSNP
rs1358221110 2585 dbSNP
rs944091681 2588 dbSNP
rs565852090 2593 dbSNP
rs975976637 2596 dbSNP
rs913723438 2597 dbSNP
rs1284911247 2602 dbSNP
rs1351007301 2603 dbSNP
rs945188967 2611 dbSNP
rs1044041454 2620 dbSNP
rs1218219621 2637 dbSNP
rs575328757 2640 dbSNP
rs1309921286 2644 dbSNP
rs542856499 2647 dbSNP
rs1054697522 2666 dbSNP
rs896267571 2671 dbSNP
rs1472975788 2672 dbSNP
rs192222498 2681 dbSNP
rs1239664975 2682 dbSNP
rs754258869 2687 dbSNP
rs529400905 2688 dbSNP
rs1015305791 2693 dbSNP
rs1251977173 2694 dbSNP
rs540983294 2699 dbSNP
rs1288645591 2700 dbSNP
rs202173323 2700 dbSNP
rs750237614 2700 dbSNP
rs897324150 2701 dbSNP
rs897708099 2705 dbSNP
rs182219771 2710 dbSNP
rs75381683 2711 dbSNP
rs1401592856 2712 dbSNP
rs1412779795 2713 dbSNP
rs1351580155 2715 dbSNP
rs1332144023 2718 dbSNP
rs1384860696 2719 dbSNP
rs184958512 2725 dbSNP
rs1365209984 2727 dbSNP
rs1324510535 2732 dbSNP
rs985488271 2736 dbSNP
rs1392695127 2737 dbSNP
rs778783712 2740 dbSNP
rs1019620227 2741 dbSNP
rs570356780 2744 dbSNP
rs1183749584 2746 dbSNP
rs1479200729 2750 dbSNP
rs1241860867 2751 dbSNP
rs989303244 2757 dbSNP
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rs920699615 6145 dbSNP
rs1203738751 6147 dbSNP
rs1458124037 6153 dbSNP
rs1259449212 6159 dbSNP
rs1211329158 6162 dbSNP
rs763888071 6163 dbSNP
rs1047896254 6167 dbSNP
rs757503728 6172 dbSNP
rs1006365068 6182 dbSNP
rs566856759 6185 dbSNP
rs1037978759 6186 dbSNP
rs76802032 6188 dbSNP
rs1419095018 6191 dbSNP
rs996610088 6192 dbSNP
rs1050616763 6197 dbSNP
rs890623316 6199 dbSNP
rs1176366677 6201 dbSNP
rs1030325465 6202 dbSNP
rs1427770565 6205 dbSNP
rs1417486928 6207 dbSNP
rs77416801 6209 dbSNP
rs1176359694 6211 dbSNP
rs1177575731 6213 dbSNP
rs1354235530 6214 dbSNP
rs1440293760 6223 dbSNP
rs999617239 6236 dbSNP
rs750504679 6244 dbSNP
rs1404365440 6250 dbSNP
rs1265459464 6252 dbSNP
rs892688969 6253 dbSNP
rs756214424 6257 dbSNP
rs989917982 6258 dbSNP
rs778896665 6262 dbSNP
rs1284036921 6266 dbSNP
rs1343537295 6270 dbSNP
rs1241391597 6283 dbSNP
rs1379540411 6289 dbSNP
rs1301956123 6290 dbSNP
rs1440737555 6295 dbSNP
rs1011008409 6300 dbSNP
rs1021520009 6302 dbSNP
rs748085089 6303 dbSNP
rs147947820 6316 dbSNP
rs1225180369 6317 dbSNP
rs3931056 6321 dbSNP
rs761758683 6326 dbSNP
rs545621439 6333 dbSNP
rs1171702462 6340 dbSNP
rs938314303 6342 dbSNP
rs777456520 6343 dbSNP
rs1483115960 6348 dbSNP
rs1198029746 6354 dbSNP
rs746609870 6361 dbSNP
rs907604818 6362 dbSNP
rs1034856032 6368 dbSNP
rs960825645 6372 dbSNP
rs1484594564 6373 dbSNP
rs13361115 6374 dbSNP
rs1216882263 6390 dbSNP
rs1278548394 6390 dbSNP
rs1356308197 6390 dbSNP
rs1234241806 6393 dbSNP
rs1313248379 6401 dbSNP
rs1192214427 6403 dbSNP
rs1304020214 6403 dbSNP
rs908468835 6405 dbSNP
rs1361350437 6408 dbSNP
rs962638575 6415 dbSNP
rs1037862526 6431 dbSNP
rs973840086 6434 dbSNP
rs1171483996 6440 dbSNP
rs900790605 6450 dbSNP
rs920586450 6452 dbSNP
rs1042877 6453 dbSNP
rs1052405910 6455 dbSNP
rs1355299785 6455 dbSNP
rs1424148246 6463 dbSNP
rs890466818 6468 dbSNP
rs533152202 6469 dbSNP
rs1301353865 6476 dbSNP
rs1363713208 6482 dbSNP
rs1422274043 6483 dbSNP
rs1193938801 6485 dbSNP
rs999903041 6493 dbSNP
rs1031062960 6498 dbSNP
rs1050500589 6501 dbSNP
rs893872937 6509 dbSNP
rs1200286585 6520 dbSNP
rs1255874626 6520 dbSNP
rs1406704327 6526 dbSNP
rs1011392147 6528 dbSNP
rs866580710 6537 dbSNP
rs944880594 6539 dbSNP
rs1021405420 6546 dbSNP
rs1361045156 6552 dbSNP
rs567947446 6559 dbSNP
rs1052593772 6569 dbSNP
rs892735481 6575 dbSNP
rs1212547797 6579 dbSNP
rs1297325590 6587 dbSNP
rs1011147358 6589 dbSNP
rs1342408852 6591 dbSNP
rs1221168875 6592 dbSNP
rs970257342 6594 dbSNP
rs1395281829 6595 dbSNP
rs1402638962 6597 dbSNP
rs904865942 6602 dbSNP
rs1398957738 6613 dbSNP
rs1001786533 6624 dbSNP
rs1478504239 6628 dbSNP
rs1415259440 6630 dbSNP
rs1186391621 6632 dbSNP
rs754810105 6634 dbSNP
rs1258630527 6636 dbSNP
rs1194593035 6638 dbSNP
rs1457682099 6653 dbSNP
rs1490680130 6655 dbSNP
rs1258824314 6658 dbSNP
rs1200661783 6664 dbSNP
rs1222976139 6667 dbSNP
rs1292980152 6670 dbSNP
rs1245779940 6684 dbSNP
rs541573126 6706 dbSNP
rs181415638 6708 dbSNP
rs1314558822 6717 dbSNP
rs527271353 6725 dbSNP
rs75527536 6727 dbSNP
rs1015413522 6729 dbSNP
rs1491435640 6739 dbSNP
rs1028203420 6740 dbSNP
rs973983516 6740 dbSNP
rs1370598463 6762 dbSNP
rs1180050479 6763 dbSNP
rs1444235327 6764 dbSNP
rs1161835531 6774 dbSNP
rs1367548385 6778 dbSNP
rs1181048160 6785 dbSNP
rs1405980788 6786 dbSNP
rs907655837 6801 dbSNP
rs141881832 6809 dbSNP
rs531515995 6815 dbSNP
rs185184886 6823 dbSNP
rs1358676054 6824 dbSNP
rs973609316 6835 dbSNP
rs922125106 6838 dbSNP
rs1259162135 6842 dbSNP
rs1428444286 6843 dbSNP
rs986100545 6843 dbSNP
rs1375866428 6844 dbSNP
rs1448824224 6848 dbSNP
rs75435155 6848 dbSNP
rs776042630 6849 dbSNP
rs890677112 6850 dbSNP
rs935358059 6853 dbSNP
rs375122248 6855 dbSNP
rs1312398717 6857 dbSNP
rs1156421217 6860 dbSNP
rs1419551916 6868 dbSNP
rs1381299825 6875 dbSNP
rs549476942 6892 dbSNP
rs1453048022 6896 dbSNP
rs529120769 6906 dbSNP
rs1010942449 6909 dbSNP
rs1199733051 6910 dbSNP
rs1045094940 6918 dbSNP
rs1453370351 6919 dbSNP
rs946999893 6922 dbSNP
rs1043958750 6923 dbSNP
rs1352729201 6931 dbSNP
rs1284232930 6935 dbSNP
rs905709769 6938 dbSNP
rs1242269507 6952 dbSNP
rs1342728972 6953 dbSNP
rs1274160578 6954 dbSNP
rs774723086 6956 dbSNP
rs1001752519 6958 dbSNP
rs1332316034 6961 dbSNP
rs1315857481 6969 dbSNP
rs1398944635 6971 dbSNP
rs905419087 6977 dbSNP
rs1300382375 6990 dbSNP
rs1433220143 6993 dbSNP
rs567499699 6999 dbSNP
rs1035638322 7000 dbSNP
rs865996742 7002 dbSNP
rs1218460822 7006 dbSNP
rs937693458 7011 dbSNP
rs960217277 7013 dbSNP
rs1004587007 7014 dbSNP
rs1218586995 7017 dbSNP
rs1440453869 7018 dbSNP
rs548683061 7023 dbSNP
rs761967904 7026 dbSNP
rs1014597685 7027 dbSNP
rs767719303 7040 dbSNP
rs1387274093 7042 dbSNP
rs1473190322 7043 dbSNP
rs896252560 7044 dbSNP
rs1217673774 7050 dbSNP
rs1340793140 7059 dbSNP
rs1279660031 7061 dbSNP
rs973156113 7064 dbSNP
rs1446362976 7067 dbSNP
rs1358933422 7068 dbSNP
rs1158045307 7070 dbSNP
rs1003956568 7077 dbSNP
rs1407243485 7079 dbSNP
rs1394457620 7081 dbSNP
rs1015882587 7082 dbSNP
rs1398878194 7084 dbSNP
rs1161210951 7085 dbSNP
rs921645877 7097 dbSNP
rs1471723685 7101 dbSNP
rs1451591919 7105 dbSNP
rs1210737797 7107 dbSNP
rs1444029903 7109 dbSNP
rs953587371 7113 dbSNP
rs898328821 7128 dbSNP
rs1279758675 7129 dbSNP
rs1226201910 7133 dbSNP
rs756745397 7138 dbSNP
rs988027015 7141 dbSNP
rs1448192165 7151 dbSNP
rs1375395342 7161 dbSNP
rs14509 7163 dbSNP
rs912174501 7164 dbSNP
rs935577168 7166 dbSNP
rs1052424802 7172 dbSNP
rs915251292 7176 dbSNP
rs750903968 7188 dbSNP
rs1028255794 7191 dbSNP
rs1404920366 7192 dbSNP
rs946691525 7202 dbSNP
rs1412844802 7204 dbSNP
rs1182186859 7207 dbSNP
rs953917828 7212 dbSNP
rs878987851 7214 dbSNP
rs750698487 7215 dbSNP
rs1457829852 7220 dbSNP
rs1018935096 7225 dbSNP
rs1218966400 7226 dbSNP
rs567019957 7231 dbSNP
rs34642609 7232 dbSNP
rs1225992300 7235 dbSNP
rs905257390 7239 dbSNP
rs1269269378 7252 dbSNP
rs966562908 7255 dbSNP
rs111589016 7259 dbSNP
rs1309251217 7260 dbSNP
rs913936317 7261 dbSNP
rs1379220615 7262 dbSNP
rs1001406282 7265 dbSNP
rs1057361572 7269 dbSNP
rs190066110 7282 dbSNP
rs1211577930 7283 dbSNP
rs1202134872 7286 dbSNP
rs926897450 7291 dbSNP
rs1426375426 7293 dbSNP
rs1004807862 7296 dbSNP
rs1056090473 7298 dbSNP
rs1157976401 7309 dbSNP
rs1440193174 7326 dbSNP
rs1443203385 7341 dbSNP
rs766409199 7342 dbSNP
rs963052941 7347 dbSNP
rs1239487560 7348 dbSNP
rs1188999822 7368 dbSNP
rs1487856693 7369 dbSNP
rs1246994686 7372 dbSNP
rs1223296956 7376 dbSNP
rs1181266087 7377 dbSNP
rs1231262593 7382 dbSNP
rs1471171113 7384 dbSNP
rs1161323528 7385 dbSNP
rs752639316 7406 dbSNP
rs534178155 7417 dbSNP
rs1295514975 7418 dbSNP
rs1368376027 7418 dbSNP
rs1173967721 7421 dbSNP
rs1358423899 7423 dbSNP
rs1403990015 7430 dbSNP
rs1414684219 7439 dbSNP
rs939642893 7444 dbSNP
rs1028763831 7451 dbSNP
rs1333504530 7453 dbSNP
rs878874507 7455 dbSNP
rs543210795 7457 dbSNP
rs953234300 7463 dbSNP
rs987691203 7465 dbSNP
rs181766533 7471 dbSNP
rs1201144665 7478 dbSNP
rs1487082968 7479 dbSNP
rs1289573378 7480 dbSNP
rs35759102 7480 dbSNP
rs956829542 7481 dbSNP
rs1254818318 7483 dbSNP
rs1345411795 7484 dbSNP
rs1312848580 7487 dbSNP
rs1222127935 7490 dbSNP
rs1303447719 7491 dbSNP
rs988366891 7491 dbSNP
rs1036787800 7492 dbSNP
rs1340183488 7502 dbSNP
rs1279040074 7514 dbSNP
rs898208837 7516 dbSNP
rs1386856389 7523 dbSNP
rs915470923 7534 dbSNP
rs946742341 7536 dbSNP
rs1177026278 7537 dbSNP
rs1359272517 7537 dbSNP
rs1422531182 7537 dbSNP
rs1476543636 7537 dbSNP
rs201427513 7537 dbSNP
rs1265382825 7541 dbSNP
rs1346075150 7549 dbSNP
rs1193912182 7553 dbSNP
rs1195465005 7554 dbSNP
rs1430674513 7554 dbSNP
rs571077506 7555 dbSNP
rs1045460695 7560 dbSNP
rs926764186 7565 dbSNP
rs1483836414 7567 dbSNP
rs889738459 7568 dbSNP
rs939430658 7571 dbSNP
rs1196872823 7575 dbSNP
rs765915376 7577 dbSNP
rs1056514852 7578 dbSNP
rs1433041 7580 dbSNP
rs1019404717 7584 dbSNP
rs1327986344 7587 dbSNP
rs940474869 7588 dbSNP
rs1395411398 7591 dbSNP
rs556680910 7592 dbSNP
rs1379170912 7598 dbSNP
rs1036296509 7600 dbSNP
rs968081490 7602 dbSNP
rs979595384 7604 dbSNP
rs899061757 7609 dbSNP
rs1367109621 7616 dbSNP
rs1167000324 7617 dbSNP
rs1187343409 7617 dbSNP
rs1245583879 7621 dbSNP
rs926784521 7628 dbSNP
rs574916803 7634 dbSNP
rs959654192 7639 dbSNP
rs186287186 7651 dbSNP
rs1238798570 7658 dbSNP
rs1197809760 7660 dbSNP
rs1029068507 7672 dbSNP
rs1354453828 7675 dbSNP
rs992425695 7680 dbSNP
rs888909247 7681 dbSNP
rs939713594 7682 dbSNP
rs1037079658 7683 dbSNP
rs1393839269 7695 dbSNP
rs751407472 7696 dbSNP
rs3733737 7704 dbSNP
rs191082313 7723 dbSNP
rs1162277636 7726 dbSNP
rs1458789510 7732 dbSNP
rs545351511 7734 dbSNP
rs1303988522 7742 dbSNP
rs1332071242 7749 dbSNP
rs1439580198 7752 dbSNP
rs988250342 7754 dbSNP
rs1227111165 7760 dbSNP
rs180815660 7761 dbSNP
rs968265188 7762 dbSNP
rs1210597196 7765 dbSNP
rs1009589335 7780 dbSNP
rs1293617274 7783 dbSNP
rs117804688 7792 dbSNP
rs543337546 7796 dbSNP
rs780980053 7798 dbSNP
rs1220194720 7800 dbSNP
rs1269330304 7803 dbSNP
rs1328831886 7805 dbSNP
rs1322492006 7809 dbSNP
rs968136676 7813 dbSNP
rs926620660 7815 dbSNP
rs745564611 7821 dbSNP
rs1367884799 7822 dbSNP
rs561787037 7826 dbSNP
rs185216699 7830 dbSNP
rs1381523457 7842 dbSNP
rs1160797953 7845 dbSNP
rs1477116744 7846 dbSNP
rs140745958 7851 dbSNP
rs1377072643 7856 dbSNP
rs3733738 7857 dbSNP
rs908602955 7858 dbSNP
rs1481511139 7862 dbSNP
rs1371042913 7868 dbSNP
rs959540524 7872 dbSNP
rs1214228209 7874 dbSNP
rs940526928 7890 dbSNP
rs1487837345 7899 dbSNP
rs868593717 7910 dbSNP
rs1284939991 7916 dbSNP
rs530152991 7916 dbSNP
rs191348712 7918 dbSNP
rs899114269 7925 dbSNP
rs1422170388 7928 dbSNP
rs567003387 7929 dbSNP
rs1347063475 7935 dbSNP
rs1275882627 7939 dbSNP
rs563500123 7946 dbSNP
rs963894914 7948 dbSNP
rs560532759 7954 dbSNP
rs552672537 7955 dbSNP
rs777501321 7956 dbSNP
rs529142922 7977 dbSNP
rs79593694 7978 dbSNP
rs868158167 7982 dbSNP
rs892202881 7986 dbSNP
rs1173280240 7992 dbSNP
rs931091411 7995 dbSNP
rs374517506 7996 dbSNP
rs116476956 7998 dbSNP
rs1229426041 8002 dbSNP
rs1242418610 8006 dbSNP
rs1195279855 8010 dbSNP
rs1440579929 8012 dbSNP
rs78135651 8015 dbSNP
rs968206481 8016 dbSNP
rs6876258 8022 dbSNP
rs1217577373 8024 dbSNP
rs1363124634 8029 dbSNP
rs1010558291 8040 dbSNP
rs1247049447 8042 dbSNP
rs1340438971 8047 dbSNP
rs1337956918 8048 dbSNP
rs1042429101 8049 dbSNP
rs550182125 8051 dbSNP
rs879814293 8055 dbSNP
rs1419993921 8056 dbSNP
rs1169481265 8058 dbSNP
rs1033906050 8069 dbSNP
rs1204404572 8079 dbSNP
rs774902943 8082 dbSNP
rs961007735 8097 dbSNP
rs1236903488 8098 dbSNP
rs1184120686 8102 dbSNP
rs992151475 8112 dbSNP
rs568781518 8113 dbSNP
rs1462281366 8120 dbSNP
rs940078481 8121 dbSNP
rs1188837415 8123 dbSNP
rs867695215 8137 dbSNP
rs1242108646 8146 dbSNP
rs1274632566 8155 dbSNP
rs971929837 8160 dbSNP
rs920427873 8182 dbSNP
rs930458963 8191 dbSNP
rs1166275727 8193 dbSNP
rs183095970 8201 dbSNP
rs1000787751 8202 dbSNP
rs535468329 8203 dbSNP
rs553467690 8206 dbSNP
rs1374807535 8207 dbSNP
rs910453511 8209 dbSNP
rs944398776 8211 dbSNP
rs77331326 8225 dbSNP
rs762148547 8229 dbSNP
rs1321828428 8231 dbSNP
rs1436227622 8232 dbSNP
rs1403456736 8241 dbSNP
rs1384320860 8242 dbSNP
rs1336369776 8244 dbSNP
rs538976666 8248 dbSNP
rs1446313034 8253 dbSNP
rs1378376310 8256 dbSNP
rs1177508805 8257 dbSNP
rs1480669492 8259 dbSNP
rs772470161 8286 dbSNP
rs188526046 8289 dbSNP
rs191621677 8290 dbSNP
rs34520099 8294 dbSNP
rs766432554 8294 dbSNP
rs879199487 8318 dbSNP
rs1292910088 8321 dbSNP
rs1313526746 8341 dbSNP
rs1352215557 8346 dbSNP
rs868510100 8351 dbSNP
rs1309134196 8356 dbSNP
rs867123832 8363 dbSNP
rs973394591 8366 dbSNP
rs867394777 8367 dbSNP
rs1027202765 8374 dbSNP
rs753875283 8381 dbSNP
rs747436088 8387 dbSNP
rs1238261299 8391 dbSNP
rs952368639 8393 dbSNP
rs1303584296 8394 dbSNP
rs1266116077 8397 dbSNP
rs960972597 8406 dbSNP
rs1358616896 8408 dbSNP
rs141705759 8409 dbSNP
rs1262181321 8412 dbSNP
rs1015600849 8414 dbSNP
rs183222357 8419 dbSNP
rs1409450410 8420 dbSNP
rs543451723 8423 dbSNP
rs1189128315 8425 dbSNP
rs961329808 8438 dbSNP
rs187876788 8439 dbSNP
rs573995941 8445 dbSNP
rs919979496 8448 dbSNP
rs1487510769 8455 dbSNP
rs56144037 8461 dbSNP
rs985970494 8469 dbSNP
rs1042961781 8490 dbSNP
rs1318823299 8497 dbSNP
rs904420139 8499 dbSNP
rs751606404 8512 dbSNP
rs1218694813 8513 dbSNP
rs910494827 8514 dbSNP
rs1285423781 8522 dbSNP
rs1406602481 8531 dbSNP
rs1404271115 8532 dbSNP
rs944638519 8533 dbSNP
rs1346477318 8550 dbSNP
rs555444448 8550 dbSNP
rs1173405576 8552 dbSNP
rs895259548 8569 dbSNP
rs913580883 8576 dbSNP
rs1429641676 8585 dbSNP
rs1201121664 8587 dbSNP
rs945017251 8592 dbSNP
rs1025182239 8593 dbSNP
rs1187652706 8603 dbSNP
rs897320499 8605 dbSNP
rs1254733442 8606 dbSNP
rs17112271 8610 dbSNP
rs1324353637 8614 dbSNP
rs79850505 8615 dbSNP
rs780801957 8618 dbSNP
rs1310155449 8624 dbSNP
rs1294523466 8625 dbSNP
rs1382552312 8629 dbSNP
rs985148529 8631 dbSNP
rs1211821963 8632 dbSNP
rs1256181024 8639 dbSNP
rs1002811515 8640 dbSNP
rs1406106487 8648 dbSNP
rs781172966 8650 dbSNP
rs1202385235 8651 dbSNP
rs1372896207 8652 dbSNP
rs1055289793 8661 dbSNP
rs1430654248 8665 dbSNP
rs1183453730 8668 dbSNP
rs1461828659 8682 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 10146.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000394123.3 | 3UTR | CAAAACUGUUGUGCCUUCUAUUUAUCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-5691 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT091162 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT242227 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT246192 TXNIP thioredoxin interacting protein 2 2
MIRT251553 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT387267 SOX9 SRY-box 9 2 2
MIRT463486 ZC3H11A zinc finger CCCH-type containing 11A 2 12
MIRT494446 BTG2 BTG anti-proliferation factor 2 2 2
MIRT496478 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT501825 NCOA3 nuclear receptor coactivator 3 2 2
MIRT503072 C6orf120 chromosome 6 open reading frame 120 2 2
MIRT504755 TEP1 telomerase associated protein 1 2 4
MIRT505971 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT511868 GOLGA7 golgin A7 2 6
MIRT512900 UBL4A ubiquitin like 4A 2 2
MIRT513048 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT523772 FAM83D family with sequence similarity 83 member D 2 2
MIRT525126 RPS11 ribosomal protein S11 2 2
MIRT525816 VIMP selenoprotein S 2 10
MIRT531222 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT531729 SLC2A9 solute carrier family 2 member 9 2 2
MIRT536282 LIMA1 LIM domain and actin binding 1 2 2
MIRT537291 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT537724 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT547940 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT554177 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT555015 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT576717 Wars tryptophanyl-tRNA synthetase 2 2
MIRT607484 HEBP2 heme binding protein 2 2 2
MIRT610786 KLK2 kallikrein related peptidase 2 2 2
MIRT611491 ZNF440 zinc finger protein 440 2 2
MIRT613986 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT615782 KIAA0319L KIAA0319 like 2 2
MIRT620563 WBSCR27 methyltransferase like 27 2 4
MIRT624157 DGKE diacylglycerol kinase epsilon 2 2
MIRT626088 MKLN1 muskelin 1 2 2
MIRT629481 GSN gelsolin 2 2
MIRT636645 CDK4 cyclin dependent kinase 4 2 2
MIRT638074 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT638442 PLXDC2 plexin domain containing 2 2 2
MIRT641025 KLHL7 kelch like family member 7 2 2
MIRT641539 MOCOS molybdenum cofactor sulfurase 2 2
MIRT643004 ZNF829 zinc finger protein 829 2 2
MIRT643092 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT644979 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT645912 PLXNA3 plexin A3 2 2
MIRT646605 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT648033 FADS6 fatty acid desaturase 6 2 2
MIRT657491 HBEGF heparin binding EGF like growth factor 2 2
MIRT658381 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT659695 CD200 CD200 molecule 2 2
MIRT661276 TEX9 testis expressed 9 2 2
MIRT661348 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662948 JPH2 junctophilin 2 2 2
MIRT663225 PPY pancreatic polypeptide 2 2
MIRT663280 SPN sialophorin 2 2
MIRT663335 ZNF74 zinc finger protein 74 2 2
MIRT664344 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664855 TBRG4 transforming growth factor beta regulator 4 2 2
MIRT665484 VPS53 VPS53, GARP complex subunit 2 2
MIRT666428 SH2B3 SH2B adaptor protein 3 2 2
MIRT668162 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT670170 CCDC142 coiled-coil domain containing 142 2 2
MIRT671277 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT672284 GP2 glycoprotein 2 2 2
MIRT672435 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672646 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672760 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672834 AKR7L aldo-keto reductase family 7 like (gene/pseudogene) 2 2
MIRT672841 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673080 AK1 adenylate kinase 1 2 2
MIRT673148 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673323 THAP1 THAP domain containing 1 2 2
MIRT673893 DCTN6 dynactin subunit 6 2 2
MIRT674182 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT674607 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674740 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675140 MOGAT1 monoacylglycerol O-acyltransferase 1 2 4
MIRT675194 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT675886 SNAP29 synaptosome associated protein 29 2 2
MIRT679163 PSMB2 proteasome subunit beta 2 2 2
MIRT680337 ZNF281 zinc finger protein 281 2 2
MIRT706699 GPR155 G protein-coupled receptor 155 2 2
MIRT706911 THAP6 THAP domain containing 6 2 2
MIRT707880 SLC45A4 solute carrier family 45 member 4 2 2
MIRT709097 SEPT4 septin 4 2 2
MIRT709408 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT710845 FAM210A family with sequence similarity 210 member A 2 2
MIRT711358 VPS8 VPS8, CORVET complex subunit 2 2
MIRT718590 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT723649 RPTN repetin 2 2
MIRT724208 NUP205 nucleoporin 205 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition