miRTarBase - #MIRT537499


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pre-miRNA Information
pre-miRNA hsa-mir-1199   
Genomic Coordinates chr19: 14073361 - 14073479
Description Homo sapiens miR-1199 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1199-5p
Sequence 21| CCUGAGCCCGGGCCGCGCAG |40
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1438702968 5 dbSNP
rs757334792 6 dbSNP
rs1159152107 9 dbSNP
rs1365081692 10 dbSNP
rs1451155091 12 dbSNP
rs934105122 17 dbSNP
Putative Targets

Gene Information
Gene Symbol FAM168B   
Synonyms MANI
Description family with sequence similarity 168 member B
Transcript NM_001009993   
Expression
Putative miRNA Targets on FAM168B
3'UTR of FAM168B
(miRNA target sites are highlighted)		 
>FAM168B|NM_001009993|3'UTR
   1 TCACCTGCAAATGTTTGAGGACGGAGCTGTGCAGTCACATTATTGGGGATTCCACAGCTGGTGCTGCAGGCCTTGCGCCT
  81 CCAACCAGGACTTTCTTCTTAATGCTCTCGACACTTAGCTAAACACGACTATATCCCGGCCCAGCAGGCCCCAGCGCCGT
 161 TAGTCTCCAGCTGACTCTGTGGGTTGGTCTTAAAGCAAATTCTGTTTTGTGGACTGCCTGGCAATTTTTTAGCTAACTGT
 241 AATGATAAAAAGGGAGTATTAATCTATTCTGAATCATATCTAGTTGAATGCATGTTTAAAAAAACAAACACAAAAAGCTT
 321 GCTCAATCTACCTGCAGTGACTGATGCAAAACCATCATATGCAAAATCCAAAGGAATGGAAACGTATTTTACAACTTGTA
 401 TCACTAATGCACTGTTGTAATGTATGCAAAGTCTTACAGTTATAAGTGTTAAAGTGAATTTCTTCATAGAGCATCTGAAA
 481 TATCTTAGATGATTCTTCAACCTTTTGGGGTTGATGTGGGTTGCCAGTTAGGGATGTGGACATTTTAGTTTTCAGCGACC
 561 TGTTTCTTTGGCACTGACTGTCCTGGGAGGGAGTTGCGAGGTTTGGGAGAGAGTAGGGAAGCCACAGCTGCTTGGGTGCA
 641 GCTGGTTCATGGACATCCCTTTGAGTTTAGGCTTGGTGGAGTCAGTGGAACAGGGACATGCTTAAAGCTCATCATGAAAG
 721 ATTATGGTAGTGTGGCCAGTGAAATTTGGGGCGAGGGGGGTGGTTTATGTGTCAGCAAAGCAGTTTCTCTGCTATCTAAA
 801 TTTTCATTACAGTTCTCTTAGAGAGATGATGTTTTTATATGTCTTTATTGGAAAAGTCCTATGTAAAACTAAATTATTTT
 881 CCTGGGATGGAAGAAATGTGAAAGAGAAACAGCCATGCTTGCAGGAGGTATTGTCCTCTGCTTTATTTAGCTTAGAAAAT
 961 CATTCCTTTTTTTTTTTTTTTCCTGGAGAAATGTTTGAATCAGCTGAAAACAGGTAGGCATTGCTGTTTTTCCCCAACAA
1041 AGAAGGGCAAAGGTTTCAGCTGTATGTTATGAAGAAAGTGGTATATTTAAGAATGAGTTAAAAGGGAACAAAACTTTATT
1121 TAAAATTCCTCCAATTTCTTGTAGAAAGGCAGGGCCGTGGATATGTCTGGAAATGTAGAAACCTGTAGCTGCTTCTGGGA
1201 TCACCCACCTGATGGTGGTGACTTGTCTGCTGAGGCCGGCTGGAGGGGACGCTTAGAGATGGGGCGAGGGGGAGGCCAGT
1281 GTCTGTTGTCTGCGAGCCTCTCCTGCCATCTCTTTTGCAGCTGAGGGCACTTGGCACAAAGCAAGCACAGACAGCAGAGA
1361 GGGCCAGGCAGTGCTGGAGTGCGTTTGCTGGCAGGGTTTATTGTGGGAGAGGAATTTGAGTTTAGGATCTGAATCTTGTA
1441 CATAAGAAATGAAAAGGCTTCCCTCCACCCCGCCCCCAAAATATGCCCGTCCTGTATCCATGAGAGTGCATGTCGGTTCT
1521 CAGTGAGGGTCAGAGTGGGGGTGGGGGATGTAAGGCCTGGGTCCCTTTCAGCGGCCTCTAGGGCAGGAGCGTGCGTCTTC
1601 TTCCCAGTGCAGTGGTGGTTTGAGTGCTGTGGGCTCTGGTGGGGAGGGGGCTCTGCTCCTCTTCATTTGCTGGTAGCTGG
1681 GTCAGGGCACTGGCGCCCAGTGAGGATGCCCACTAGCATTCTGCCCCAGTTGGTTGGTGGGGGGACACCTGACCACTGAG
1761 CCTTTGGTAACCTTATTTTTTATAGTAAGTACTTCTTATAATTTTCTTTTTCACATCTTATTTTATAAGAAGTTTAGGAA
1841 TATTTTTGCATGGATCATTGTAAACAGCAGATTCTTTATTCCTGATGTCTATTAACATAGAATGTTTACTGATAAGTACT
1921 TTAAATTGCTTCATGAGCACTTAATCCATCTTAGTGTCTATGTGTGGGGGCAGACATTTACCGCAGGCACACAGTTTGTG
2001 CCCCTTTCTTCAAGTCTCTGTTGGTAATTCCATCTGTTTAGTGGATGGTTGGCAGGATTAGTAGGTTCTAACGGTTCCAG
2081 GGGTTCAGCTGACCAAGTAGCAGAGAAGTCTTTTTTCCCAATTGAGTGCTAATAGATTAGGATAAAATACTCACAATGTT
2161 AGTGTATGCTTTTAAAAAGCCCCACACAACAAAATGGAAACATACATGTACAACTCCTGTGAGGGCTGGAGTCTTGGGGT
2241 TCAGGAGGAGGTTAGAAGTTACAGGCATCTCTTCAGGCTTGCTTGGTACTTGGCACACACAGGATGGTGTTTTAAAGAGT
2321 GGGCTGCACCCCCCACACGCCATTTACATCAGCTTCATAAACACTTTTCTTCCTCCCTGTAACTTAACCTTTTTTCCCTT
2401 TTATGAAGTTGAGAGGCTTTATGAAATAAGTTTGCATTGCACATCCGTGCAGAAATCTTTCTGACTTTGAAATTTTTAGG
2481 ACGTCAGCTGTCAGATACGAAAGGTAGATATCAGGTAAGAATCTGGACTTAGGAAATAGTCACAAAACTGTCATAGGTTG
2561 TAATTTTATCAACATTCGCTTCTAGTAAAATTAAAGTCAATTAAGAAATAGAACTTGGGTCAAAATTCTGTTACAAAGCT
2641 TCATAATTTGTCCCGAAGCATATGGTGGAGCATTCTGAGAAATTTGCTTTTTGTGTGTTTGACATTCCTAATTTGGGAGT
2721 CCTTCAGCTGAATTACTATTCTTTTAGAAGTTGAGACAGCAGGTAAGCAAAGGACCTAGTTCATGTAAACATGGACATCA
2801 TGATGGCTATTTAAAAAATATTTGTTCTACACCTTCTCCCCTGAGGCTTGGGGAGTGTGTTCAGCCGCTGCAGTTTCTCT
2881 GCTCATGGAGGTCTTGTTTGGATCTGTGCTGGCGGCTGAGCATTTAGTGTGAGCCAGTGACCCATGAACTTGCCGCTCTG
2961 TGAGGGCCAGAGTCAGGGCCAGTCATGGTAATGGGCCTGAAGGCACTTCCAGAACCTTTTATGTCTCTCGTGAGCCATCT
3041 GTTAAGAACGTTCTTCTTGGTGTGGTTTGTAGGCCTACCTGTCGCTATTCTGGGAAACCTTCTTGAGTGCTATGCAAATG
3121 TGTTCACAGGCAATGGGGGTGGTCCTGAGCCTTGGGGTGGGCACCTGGTCAGTGAGTGTCTTGCCCTTCCCCAGCTGGGC
3201 ATACAGTACCTTGCTCTTTCTGGTGGCATCATCTGGCTGTGATGAATGAGGTCTAGGAAATAATTTGCATGTGTCTTGGG
3281 GGACACAACAGTAACGAGAGGAAATACATTATTACAGCAACTTGCGACGTACTAATACCTGTCAGTGTTGGCCCCCGTAA
3361 GGTATGTAAGGCACCTGTGAGTGCCAGTGAGTGCTGGTGAAAGGCCAACATGTACTAGTTATGTAAGTATTGGTGTCTGC
3441 TTTAAAAAAGGAGACCCAGACTTCACCTGTCCTTTTTAAACATTTGAGAACAGTGTTACTCTGAGCAGTTGGGCCACCTT
3521 CACCTTATCCGACAGCTGACTGTTGGATGTGTCCATTGTCGCCAGTTTGGCTGTTGCCCGGACAGGACAGGACCTCCATT
3601 GGGCGCAGCAGCAGGTGGCAGGGGTGTGGCTTGAGGTGGGTGGCAGCGTCTGGTCCTCCTCTCTGGTGCTTTCTGAGAGG
3681 GTCTCTAAAGCAGAGTGTGGTTGGCCTGGGGGAAGGCAGAGCACGTATTTCTCCCCTCTAGTACCTCTGCATTTGTGAGT
3761 GTTCCCTCTGGCTTTCTGAAGGGCAGCAGACTCTTGAGTATACTGCAGAGGACATGCTTTATCAGTAGGTCCTGAGGGCT
3841 CCAGGGGCTCAACTGACCAAGTAACACAGAAGTTGGGGTATGTGGCCTATTTGGGTCGGAAACTGCATGTTTCAGAAAGT
3921 TTGTCTCTTTTTCCTACTCATTATTTGAAGAAGAGAGAGCCTGTGGGGATAGCCTTATCTTGGTCCACAGGACTGAAGTG
4001 AAGTCACTTGGGAAGGGGAGACAGAGGATGAGCGGCGTCTGTGTAGGGACCCCCCCCCGGGCCTGCAGAAGGGTGGTGTG
4081 CTCCCAGGACTGGCATGACAGGTGTCTCCTCCTCACCACAGGCTGTGCCCATGAGTCCCTGTGCAGACCAGTGGGCAAGG
4161 CAGCTGGGCCAGATCTCAGGCCAGCCGTTTGTGCTCCTAGCAGGGTTGCTGTGCTGGCCACACGGAGAGGCCCTAGAGAG
4241 CCTCATGGATTGTAACTAAAGAAGAAACGGTTCCTTTTTGTTTTTTTAAAAATGATTTTTAAATACCGTTTTTTACACCG
4321 TTCTCTCGGTACTTTTTTTAAGCTAAGTCAGCATTGTCTTCCAGTGTTAAAGGCATCCCTCACCTCTGCATTGAACTTAC
4401 GTATCCATGCCAAGGAATGGAATTTCCATCCTGAGCCAGTTCAGTTAGGTGTCAATTGATACTATTTTAATTTTTTATGC
4481 AATCTGATGAGATGAGCTCAGATTTAAAAATCTCAAAAGCACGTTTATTGTAACAAGAATTGTTATGTATTAATACTGCA
4561 GTTTTCAATAAAGATTGACTTGTGTTGCAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacgcGCCGGG---CCCGAGUCc 5'
               |||::|   |||:|||| 
Target 5' tctaaCGGTTCCAGGGGTTCAGc 3'
 2067 - 2089 139.00 -20.00
2 
miRNA  3' gacgcgCCGGG---CCCGAGUcc 5'
                |||:|   |||||||  
Target 5' cctgagGGCTCCAGGGGCTCAac 3'
 3831 - 3853 134.00 -20.40
3 
miRNA  3' gacgCGCCGGG-CCCGAGUCc 5'
              | | |:: |||:|||| 
Target 5' gctgGAGTCTTGGGGTTCAGg 3'
 2225 - 2245 132.00 -21.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26649881 8 COSMIC
COSN1224021 65 COSMIC
COSN31541716 536 COSMIC
COSN6209097 588 COSMIC
COSN21056433 629 COSMIC
COSN24722184 649 COSMIC
COSN31485585 724 COSMIC
COSN28377484 736 COSMIC
COSN20097156 941 COSMIC
COSN22364793 1296 COSMIC
COSN26722289 1400 COSMIC
COSN20097154 1405 COSMIC
COSN22617363 1554 COSMIC
COSN21614704 1576 COSMIC
COSN32056228 1594 COSMIC
COSN7337652 1905 COSMIC
COSN16694242 1920 COSMIC
COSN25835688 2011 COSMIC
COSN26563024 2419 COSMIC
COSN31571959 2421 COSMIC
COSN18850628 2472 COSMIC
COSN8268032 2836 COSMIC
COSN7337651 2921 COSMIC
COSN9859061 2957 COSMIC
COSN9859060 2958 COSMIC
COSN15755600 3028 COSMIC
COSN31547755 3113 COSMIC
COSN28718278 3115 COSMIC
COSN31481778 3115 COSMIC
COSN25012389 3574 COSMIC
COSN26710566 3597 COSMIC
COSN26551341 3992 COSMIC
COSN26537703 3993 COSMIC
COSN9080430 3998 COSMIC
COSN31997421 4043 COSMIC
COSN26599237 4086 COSMIC
COSN31524286 4163 COSMIC
COSN31566046 4167 COSMIC
COSN30127089 4473 COSMIC
COSN28183488 4488 COSMIC
COSN15677184 4506 COSMIC
COSN14603937 4513 COSMIC
COSN30110802 4570 COSMIC
COSN26856025 4584 COSMIC
COSN22073136 4599 COSMIC
COSN20074483 4715 COSMIC
COSN20744958 4725 COSMIC
COSN20074340 4726 COSMIC
COSN30530602 4732 COSMIC
COSN1787904 4733 COSMIC
COSN30662528 4747 COSMIC
COSN30575512 4771 COSMIC
COSN15936362 4777 COSMIC
COSN28045378 4972 COSMIC
COSN31565244 4975 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs370570470 2 dbSNP
rs769833047 4 dbSNP
rs1019946206 8 dbSNP
rs1215442909 10 dbSNP
rs761220810 12 dbSNP
rs1279851773 13 dbSNP
rs1221290164 15 dbSNP
rs1322857011 21 dbSNP
rs1351876079 22 dbSNP
rs1364404492 24 dbSNP
rs1006711182 26 dbSNP
rs978489866 30 dbSNP
rs1241459680 33 dbSNP
rs190655958 35 dbSNP
rs1026710935 40 dbSNP
rs762955520 41 dbSNP
rs1301145465 46 dbSNP
rs1391138630 56 dbSNP
rs1307561130 61 dbSNP
rs1356051177 63 dbSNP
rs896887418 66 dbSNP
rs986347716 68 dbSNP
rs1291394973 69 dbSNP
rs954572221 76 dbSNP
rs1318592848 93 dbSNP
rs75440346 96 dbSNP
rs186111921 101 dbSNP
rs1176358408 102 dbSNP
rs1236144705 110 dbSNP
rs776518251 115 dbSNP
rs1441386686 119 dbSNP
rs1384278952 120 dbSNP
rs1403067658 121 dbSNP
rs181082877 127 dbSNP
rs1350923705 128 dbSNP
rs1461932194 129 dbSNP
rs1403965890 133 dbSNP
rs147070989 138 dbSNP
rs191402850 142 dbSNP
rs1448052654 147 dbSNP
rs140497063 163 dbSNP
rs1377291913 169 dbSNP
rs938161776 174 dbSNP
rs534387964 175 dbSNP
rs1230056728 182 dbSNP
rs1290700541 185 dbSNP
rs905246039 196 dbSNP
rs1045173338 198 dbSNP
rs925415910 199 dbSNP
rs3814392 209 dbSNP
rs1245721223 221 dbSNP
rs151301402 224 dbSNP
rs1179069445 225 dbSNP
rs1258982877 228 dbSNP
rs913956041 233 dbSNP
rs1471617888 239 dbSNP
rs1183040802 240 dbSNP
rs1187753741 247 dbSNP
rs1427474383 248 dbSNP
rs976147357 250 dbSNP
rs1169142413 251 dbSNP
rs1403144097 255 dbSNP
rs1486029702 260 dbSNP
rs1336515173 261 dbSNP
rs1052685922 279 dbSNP
rs1450475697 286 dbSNP
rs1264500388 294 dbSNP
rs966431234 297 dbSNP
rs1361345630 298 dbSNP
rs1216927844 301 dbSNP
rs1276193152 302 dbSNP
rs773458816 318 dbSNP
rs1319958557 331 dbSNP
rs1198987434 340 dbSNP
rs1277669971 344 dbSNP
rs1440273298 346 dbSNP
rs935594456 348 dbSNP
rs1237749670 358 dbSNP
rs34542874 359 dbSNP
rs115011788 360 dbSNP
rs1292184447 361 dbSNP
rs985321117 363 dbSNP
rs947094183 368 dbSNP
rs1176081691 370 dbSNP
rs772399277 375 dbSNP
rs1416577301 394 dbSNP
rs555055594 401 dbSNP
rs995284740 402 dbSNP
rs1398185628 403 dbSNP
rs896944468 407 dbSNP
rs1342230748 408 dbSNP
rs1219174747 414 dbSNP
rs748462646 415 dbSNP
rs1383997553 417 dbSNP
rs1274254110 420 dbSNP
rs1342591081 423 dbSNP
rs142382176 426 dbSNP
rs114016239 428 dbSNP
rs115728064 429 dbSNP
rs1434530727 435 dbSNP
rs1213754054 439 dbSNP
rs539651736 441 dbSNP
rs1264716239 446 dbSNP
rs149222709 460 dbSNP
rs1367893160 461 dbSNP
rs896099644 467 dbSNP
rs1055401465 476 dbSNP
rs550294499 477 dbSNP
rs766806464 478 dbSNP
rs779280694 481 dbSNP
rs1173562706 482 dbSNP
rs111796478 483 dbSNP
rs1429735861 493 dbSNP
rs1379868621 494 dbSNP
rs1418112633 500 dbSNP
rs1160459424 511 dbSNP
rs146628434 514 dbSNP
rs1173082704 522 dbSNP
rs567686038 523 dbSNP
rs1404473938 528 dbSNP
rs1322782018 532 dbSNP
rs961961564 534 dbSNP
rs1428610837 536 dbSNP
rs1266001195 539 dbSNP
rs1352443798 541 dbSNP
rs1189133049 542 dbSNP
rs1237505999 543 dbSNP
rs1043941749 544 dbSNP
rs1016148183 545 dbSNP
rs1288303847 547 dbSNP
rs945533902 548 dbSNP
rs1490730453 551 dbSNP
rs969416884 553 dbSNP
rs549098329 555 dbSNP
rs1269401532 556 dbSNP
rs1204168179 557 dbSNP
rs1481910625 564 dbSNP
rs768976193 567 dbSNP
rs1040825328 575 dbSNP
rs185850363 576 dbSNP
rs779426898 580 dbSNP
rs1324205233 590 dbSNP
rs527644934 593 dbSNP
rs1444369899 596 dbSNP
rs896638764 597 dbSNP
rs560424785 600 dbSNP
rs1052634103 601 dbSNP
rs529057043 605 dbSNP
rs904083804 607 dbSNP
rs1358996386 608 dbSNP
rs1304202860 613 dbSNP
rs1210953170 615 dbSNP
rs1258044421 617 dbSNP
rs1456702088 620 dbSNP
rs569879869 633 dbSNP
rs947011176 634 dbSNP
rs986081633 640 dbSNP
rs750022665 645 dbSNP
rs1370269517 647 dbSNP
rs933106086 653 dbSNP
rs1462913270 656 dbSNP
rs1165539116 657 dbSNP
rs1376619292 664 dbSNP
rs1173321649 669 dbSNP
rs1481249860 670 dbSNP
rs919842445 672 dbSNP
rs1333146853 681 dbSNP
rs973913927 683 dbSNP
rs780943668 687 dbSNP
rs1015344882 688 dbSNP
rs1395098689 690 dbSNP
rs1481962780 694 dbSNP
rs1013727133 697 dbSNP
rs1196350796 699 dbSNP
rs1244944450 707 dbSNP
rs1482873257 708 dbSNP
rs757004717 714 dbSNP
rs1316625073 715 dbSNP
rs1201848329 717 dbSNP
rs1220790069 720 dbSNP
rs751336347 743 dbSNP
rs961870637 743 dbSNP
rs1258594515 746 dbSNP
rs1443047426 747 dbSNP
rs551613173 749 dbSNP
rs533396931 750 dbSNP
rs144486831 751 dbSNP
rs1284181686 761 dbSNP
rs904144412 764 dbSNP
rs1227966853 778 dbSNP
rs969786321 779 dbSNP
rs1373425010 798 dbSNP
rs763996769 808 dbSNP
rs1014073987 814 dbSNP
rs1403951960 815 dbSNP
rs866475643 816 dbSNP
rs1009743539 821 dbSNP
rs1402108078 836 dbSNP
rs892606780 837 dbSNP
rs1040475282 840 dbSNP
rs1031110899 847 dbSNP
rs1470675860 849 dbSNP
rs1296995679 855 dbSNP
rs999656976 857 dbSNP
rs1158003036 863 dbSNP
rs762790022 867 dbSNP
rs904031890 871 dbSNP
rs78035970 874 dbSNP
rs1365372563 875 dbSNP
rs752743539 877 dbSNP
rs1007184243 878 dbSNP
rs1050428411 881 dbSNP
rs1195732777 884 dbSNP
rs888759029 884 dbSNP
rs528961187 892 dbSNP
rs1423243292 895 dbSNP
rs561791872 896 dbSNP
rs1254004416 902 dbSNP
rs1185286699 903 dbSNP
rs1050123589 911 dbSNP
rs930639946 920 dbSNP
rs1434961608 921 dbSNP
rs866709153 926 dbSNP
rs919853569 929 dbSNP
rs974359746 938 dbSNP
rs1263793041 940 dbSNP
rs549797192 945 dbSNP
rs961252556 946 dbSNP
rs1289932393 949 dbSNP
rs1367556350 959 dbSNP
rs1348787378 961 dbSNP
rs766335673 962 dbSNP
rs1371918190 974 dbSNP
rs1240210494 984 dbSNP
rs760853623 991 dbSNP
rs1284212153 992 dbSNP
rs991990041 995 dbSNP
rs866150007 997 dbSNP
rs960759149 1011 dbSNP
rs1313579400 1013 dbSNP
rs1261193891 1019 dbSNP
rs940493686 1029 dbSNP
rs540246105 1031 dbSNP
rs1269205118 1032 dbSNP
rs909083613 1034 dbSNP
rs1033426363 1035 dbSNP
rs1001903670 1036 dbSNP
rs3814393 1040 dbSNP
rs1022556698 1046 dbSNP
rs1398651074 1046 dbSNP
rs1386678903 1052 dbSNP
rs1158721348 1055 dbSNP
rs565056476 1057 dbSNP
rs1395657288 1068 dbSNP
rs1383102139 1073 dbSNP
rs558084706 1074 dbSNP
rs112982760 1078 dbSNP
rs1307307381 1087 dbSNP
rs1445138889 1088 dbSNP
rs1224358070 1089 dbSNP
rs1031059916 1091 dbSNP
rs1320971461 1096 dbSNP
rs892707023 1108 dbSNP
rs1243880207 1115 dbSNP
rs1275029897 1123 dbSNP
rs762025128 1133 dbSNP
rs1468726682 1134 dbSNP
rs978208532 1139 dbSNP
rs968208369 1149 dbSNP
rs1441180768 1158 dbSNP
rs1177213930 1164 dbSNP
rs781557388 1190 dbSNP
rs575434745 1191 dbSNP
rs1007538037 1193 dbSNP
rs556861718 1195 dbSNP
rs1329751597 1199 dbSNP
rs997099035 1203 dbSNP
rs1443209997 1205 dbSNP
rs765658893 1225 dbSNP
rs1205888412 1227 dbSNP
rs538364411 1229 dbSNP
rs567670679 1232 dbSNP
rs1230141875 1253 dbSNP
rs889235359 1257 dbSNP
rs868310224 1264 dbSNP
rs1290003945 1265 dbSNP
rs1255928650 1266 dbSNP
rs1050438274 1268 dbSNP
rs1036062772 1269 dbSNP
rs1236590114 1275 dbSNP
rs7598890 1279 dbSNP
rs1183124881 1285 dbSNP
rs1428045123 1285 dbSNP
rs887594775 1286 dbSNP
rs1477786520 1295 dbSNP
rs1168897253 1311 dbSNP
rs899146107 1314 dbSNP
rs1048858232 1322 dbSNP
rs1038302478 1336 dbSNP
rs572806806 1340 dbSNP
rs1363531660 1342 dbSNP
rs1357677004 1343 dbSNP
rs1450240049 1348 dbSNP
rs533937483 1351 dbSNP
rs1313574577 1353 dbSNP
rs1165218157 1359 dbSNP
rs1399322363 1360 dbSNP
rs916462788 1364 dbSNP
rs1341187837 1365 dbSNP
rs1214982922 1366 dbSNP
rs1277425542 1377 dbSNP
rs1425289005 1383 dbSNP
rs1389482169 1386 dbSNP
rs1310092896 1389 dbSNP
rs1166024231 1400 dbSNP
rs1474479032 1403 dbSNP
rs1374822680 1404 dbSNP
rs1194215067 1405 dbSNP
rs1487714525 1405 dbSNP
rs1192109224 1406 dbSNP
rs1451228602 1417 dbSNP
rs1267281784 1419 dbSNP
rs11293154 1420 dbSNP
rs1172385054 1420 dbSNP
rs1174575547 1420 dbSNP
rs1359969253 1420 dbSNP
rs1439436931 1420 dbSNP
rs573312042 1420 dbSNP
rs1225181145 1421 dbSNP
rs1490596677 1422 dbSNP
rs1274570709 1423 dbSNP
rs1213275987 1424 dbSNP
rs1340904262 1429 dbSNP
rs1270242309 1430 dbSNP
rs1328157675 1430 dbSNP
rs1232145455 1431 dbSNP
rs1431129525 1433 dbSNP
rs566527121 1453 dbSNP
rs1364966166 1456 dbSNP
rs1236033847 1470 dbSNP
rs1280671317 1481 dbSNP
rs992495664 1482 dbSNP
rs1213868448 1484 dbSNP
rs1286900046 1502 dbSNP
rs1331631594 1504 dbSNP
rs939959288 1505 dbSNP
rs908434983 1507 dbSNP
rs939326726 1516 dbSNP
rs1343244374 1519 dbSNP
rs1198519527 1527 dbSNP
rs752101636 1532 dbSNP
rs1304803605 1535 dbSNP
rs923980131 1542 dbSNP
rs1455901921 1545 dbSNP
rs1194484015 1546 dbSNP
rs978154778 1552 dbSNP
rs1405339019 1555 dbSNP
rs1022813184 1556 dbSNP
rs968151723 1556 dbSNP
rs1401219385 1560 dbSNP
rs551700167 1563 dbSNP
rs533444779 1566 dbSNP
rs1442891887 1572 dbSNP
rs954355923 1579 dbSNP
rs939159691 1587 dbSNP
rs1375722256 1594 dbSNP
rs926367430 1595 dbSNP
rs980476950 1611 dbSNP
rs569465592 1614 dbSNP
rs967720464 1620 dbSNP
rs1288415188 1621 dbSNP
rs1022408519 1622 dbSNP
rs1480270626 1630 dbSNP
rs35864588 1638 dbSNP
rs769121141 1647 dbSNP
rs1004518668 1649 dbSNP
rs1183991953 1658 dbSNP
rs887512170 1663 dbSNP
rs550912357 1664 dbSNP
rs1049289560 1667 dbSNP
rs181545500 1668 dbSNP
rs1415631217 1673 dbSNP
rs561774303 1675 dbSNP
rs540282673 1676 dbSNP
rs1399012349 1677 dbSNP
rs528137977 1684 dbSNP
rs541457330 1687 dbSNP
rs1009490473 1688 dbSNP
rs367553885 1689 dbSNP
rs1335813699 1691 dbSNP
rs1232627688 1694 dbSNP
rs1243485949 1694 dbSNP
rs889245028 1696 dbSNP
rs1282905219 1697 dbSNP
rs376404970 1698 dbSNP
rs1234220375 1702 dbSNP
rs1440041269 1703 dbSNP
rs1273170895 1704 dbSNP
rs116069859 1705 dbSNP
rs1320721315 1706 dbSNP
rs1441881632 1709 dbSNP
rs1185549661 1711 dbSNP
rs899241038 1714 dbSNP
rs1036792240 1716 dbSNP
rs940696878 1717 dbSNP
rs887058117 1731 dbSNP
rs1277532353 1738 dbSNP
rs1422640450 1746 dbSNP
rs915288060 1747 dbSNP
rs766484631 1748 dbSNP
rs985955236 1750 dbSNP
rs1355032831 1753 dbSNP
rs1056349234 1754 dbSNP
rs1469368006 1756 dbSNP
rs1310553541 1757 dbSNP
rs1403939492 1760 dbSNP
rs1357836698 1764 dbSNP
rs1178891371 1775 dbSNP
rs1278180366 1777 dbSNP
rs1316424035 1780 dbSNP
rs1230126061 1782 dbSNP
rs939168118 1788 dbSNP
rs1344607377 1790 dbSNP
rs1198736852 1794 dbSNP
rs1407781671 1796 dbSNP
rs926419327 1798 dbSNP
rs980588224 1799 dbSNP
rs1188545084 1806 dbSNP
rs527749669 1820 dbSNP
rs6746772 1821 dbSNP
rs1195091405 1824 dbSNP
rs557186739 1827 dbSNP
rs796928900 1828 dbSNP
rs1183462472 1831 dbSNP
rs1004467510 1838 dbSNP
rs1434850179 1842 dbSNP
rs1298090503 1852 dbSNP
rs956367978 1856 dbSNP
rs1459611637 1857 dbSNP
rs951810851 1860 dbSNP
rs1019618945 1868 dbSNP
rs1027400342 1876 dbSNP
rs868379455 1880 dbSNP
rs1282798755 1906 dbSNP
rs534119308 1908 dbSNP
rs139831749 1909 dbSNP
rs574528653 1910 dbSNP
rs758449101 1911 dbSNP
rs994944583 1912 dbSNP
rs902406045 1915 dbSNP
rs1450231724 1916 dbSNP
rs1042329944 1920 dbSNP
rs149142730 1920 dbSNP
rs1454300435 1921 dbSNP
rs1338968351 1922 dbSNP
rs1453388295 1923 dbSNP
rs1343888318 1924 dbSNP
rs899283117 1926 dbSNP
rs114441663 1927 dbSNP
rs1390440175 1931 dbSNP
rs1439218354 1938 dbSNP
rs534021405 1943 dbSNP
rs1239449368 1949 dbSNP
rs566563556 1952 dbSNP
rs1318877879 1953 dbSNP
rs1241080126 1954 dbSNP
rs1409408642 1971 dbSNP
rs765475669 1975 dbSNP
rs1443195484 1977 dbSNP
rs1056802213 1979 dbSNP
rs1244539585 1980 dbSNP
rs1003491345 1984 dbSNP
rs1405147992 1988 dbSNP
rs1420408201 1994 dbSNP
rs542334982 1998 dbSNP
rs1368431775 2003 dbSNP
rs1485379191 2005 dbSNP
rs10201624 2007 dbSNP
rs1217372601 2010 dbSNP
rs1317411242 2011 dbSNP
rs576554111 2014 dbSNP
rs1290985552 2016 dbSNP
rs908766482 2019 dbSNP
rs376151537 2026 dbSNP
rs984373366 2027 dbSNP
rs1334095775 2028 dbSNP
rs868194039 2029 dbSNP
rs946525007 2032 dbSNP
rs114987054 2033 dbSNP
rs990574960 2035 dbSNP
rs1052153805 2036 dbSNP
rs1481307019 2039 dbSNP
rs1034784390 2044 dbSNP
rs563110032 2045 dbSNP
rs1474517266 2046 dbSNP
rs1287163650 2048 dbSNP
rs546043262 2052 dbSNP
rs1419007071 2072 dbSNP
rs911535316 2076 dbSNP
rs145937400 2077 dbSNP
rs953653314 2081 dbSNP
rs865992884 2087 dbSNP
rs1302349786 2090 dbSNP
rs746720323 2091 dbSNP
rs11691178 2099 dbSNP
rs1483857281 2100 dbSNP
rs577142616 2101 dbSNP
rs535672870 2103 dbSNP
rs932687083 2111 dbSNP
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rs1213808722 2121 dbSNP
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rs960326231 2133 dbSNP
rs1035718184 2135 dbSNP
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rs948808183 3000 dbSNP
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rs746466767 4000 dbSNP
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rs1422482324 4723 dbSNP
rs1170881014 4725 dbSNP
rs750295572 4726 dbSNP
rs756052491 4726 dbSNP
rs1392742166 4730 dbSNP
rs1430689258 4731 dbSNP
rs1220015496 4732 dbSNP
rs1265663855 4734 dbSNP
rs1320539953 4738 dbSNP
rs1242004629 4739 dbSNP
rs1294508053 4740 dbSNP
rs1360793196 4742 dbSNP
rs1205150615 4744 dbSNP
rs1191162720 4745 dbSNP
rs559766752 4746 dbSNP
rs751336386 4753 dbSNP
rs984675452 4754 dbSNP
rs1255752720 4755 dbSNP
rs952865010 4757 dbSNP
rs555350802 4758 dbSNP
rs1267765009 4759 dbSNP
rs1176449195 4761 dbSNP
rs541772400 4765 dbSNP
rs1167929888 4766 dbSNP
rs1236610827 4766 dbSNP
rs1298341382 4773 dbSNP
rs751591279 4775 dbSNP
rs577486562 4777 dbSNP
rs1393996523 4778 dbSNP
rs1316523286 4789 dbSNP
rs535157387 4795 dbSNP
rs894366760 4804 dbSNP
rs1034227970 4812 dbSNP
rs1228256032 4813 dbSNP
rs1318701724 4818 dbSNP
rs1309568660 4819 dbSNP
rs1205667568 4820 dbSNP
rs1000430131 4826 dbSNP
rs558949108 4829 dbSNP
rs1231694380 4838 dbSNP
rs1243792137 4838 dbSNP
rs544001392 4839 dbSNP
rs576517224 4845 dbSNP
rs1411386248 4848 dbSNP
rs879080299 4849 dbSNP
rs148957611 4851 dbSNP
rs1358425425 4852 dbSNP
rs1464213894 4853 dbSNP
rs972769467 4858 dbSNP
rs900816298 4866 dbSNP
rs138770535 4874 dbSNP
rs942977010 4876 dbSNP
rs1374136367 4882 dbSNP
rs1332960714 4885 dbSNP
rs1364691085 4887 dbSNP
rs758635488 4893 dbSNP
rs181902942 4899 dbSNP
rs556049785 4900 dbSNP
rs1205765150 4902 dbSNP
rs1024176514 4904 dbSNP
rs1378168691 4907 dbSNP
rs1464452797 4909 dbSNP
rs1206913616 4912 dbSNP
rs578081423 4918 dbSNP
rs1417097102 4920 dbSNP
rs1378629215 4928 dbSNP
rs1014111703 4929 dbSNP
rs754090263 4935 dbSNP
rs1178068558 4936 dbSNP
rs1406358147 4937 dbSNP
rs1456439277 4946 dbSNP
rs1317942105 4951 dbSNP
rs1346501692 4957 dbSNP
rs972784416 4960 dbSNP
rs538220398 4961 dbSNP
rs760023335 4968 dbSNP
rs1365872099 4972 dbSNP
rs1025003208 4977 dbSNP
rs1284086935 4979 dbSNP
rs990816015 4984 dbSNP
rs1226859849 4995 dbSNP
rs1286407538 5004 dbSNP
rs1447699189 5007 dbSNP
rs1000572222 5018 dbSNP
rs904556817 5020 dbSNP
rs1242585642 5024 dbSNP
rs958682594 5024 dbSNP
rs1489760970 5027 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 130074.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000409185.1 | 3UTR | AUUUAAAAAUCUCAAAAGCACGUUUAUUGUAACAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-1199-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130735 GATAD2B GATA zinc finger domain containing 2B 2 4
MIRT134908 CCND2 cyclin D2 2 2
MIRT273033 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT276644 KPNA3 karyopherin subunit alpha 3 2 6
MIRT446532 OAS2 2'-5'-oligoadenylate synthetase 2 2 2
MIRT456270 TDRKH tudor and KH domain containing 2 12
MIRT494455 BTG2 BTG anti-proliferation factor 2 2 2
MIRT494966 USP46 ubiquitin specific peptidase 46 2 2
MIRT496690 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT496698 RGS11 regulator of G protein signaling 11 2 2
MIRT504377 IRF4 interferon regulatory factor 4 2 6
MIRT510981 PFN2 profilin 2 2 6
MIRT512549 MFN2 mitofusin 2 2 6
MIRT513640 TP53INP2 tumor protein p53 inducible nuclear protein 2 2 2
MIRT514017 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 4
MIRT514075 MTRNR2L6 MT-RNR2-like 6 2 2
MIRT515302 C15orf38-AP3S2 C15orf38-AP3S2 readthrough 2 4
MIRT517286 AP3S2 adaptor related protein complex 3 sigma 2 subunit 2 4
MIRT519076 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT520780 TCF23 transcription factor 23 2 2
MIRT522487 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT528857 PKP1 plakophilin 1 2 2
MIRT529080 PATE2 prostate and testis expressed 2 2 2
MIRT531210 PLA2G4D phospholipase A2 group IVD 2 2
MIRT533989 TAB3 TGF-beta activated kinase 1 and MAP3K7 binding protein 3 2 2
MIRT537025 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT537499 FAM168B family with sequence similarity 168 member B 2 2
MIRT553127 UBE2Z ubiquitin conjugating enzyme E2 Z 2 2
MIRT555592 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT556371 LUZP1 leucine zipper protein 1 2 2
MIRT569746 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT570150 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT571244 FADS6 fatty acid desaturase 6 2 2
MIRT573066 TRIB1 tribbles pseudokinase 1 2 2
MIRT575534 Map4 microtubule-associated protein 4 2 2
MIRT575778 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT616559 ZNF512B zinc finger protein 512B 2 2
MIRT630079 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT631480 KLHL21 kelch like family member 21 2 2
MIRT632174 CCL22 C-C motif chemokine ligand 22 2 2
MIRT638398 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT641193 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT642563 TEX9 testis expressed 9 2 2
MIRT642938 KRTAP5-9 keratin associated protein 5-9 2 2
MIRT649704 ZNF175 zinc finger protein 175 2 2
MIRT652114 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT652274 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT655216 PFKM phosphofructokinase, muscle 2 2
MIRT682779 ZNF852 zinc finger protein 852 2 2
MIRT683002 MUC20 mucin 20, cell surface associated 2 2
MIRT684321 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT689436 CYB561 cytochrome b561 2 2
MIRT693848 ZNF107 zinc finger protein 107 2 2
MIRT696716 TAX1BP3 Tax1 binding protein 3 2 2
MIRT698598 TEX261 testis expressed 261 2 2
MIRT699974 RREB1 ras responsive element binding protein 1 2 2
MIRT703311 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT706797 RAI1 retinoic acid induced 1 2 2
MIRT709005 CD109 CD109 molecule 2 2
MIRT709182 TBC1D10B TBC1 domain family member 10B 2 2
MIRT709836 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT711628 CORO1C coronin 1C 2 2
MIRT712635 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713695 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT713753 SLC9A8 solute carrier family 9 member A8 2 2
MIRT714909 CHMP3 charged multivesicular body protein 3 2 2
MIRT716372 CBLL1 Cbl proto-oncogene like 1 2 2
MIRT718304 XPOT exportin for tRNA 2 2
MIRT718714 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT718741 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT719442 NPTX2 neuronal pentraxin 2 2 2
MIRT720897 OTUD4 OTU deubiquitinase 4 2 2
MIRT722450 RXFP4 relaxin/insulin like family peptide receptor 4 2 2
MIRT723883 VKORC1 vitamin K epoxide reductase complex subunit 1 2 2
MIRT724587 SYNJ2BP synaptojanin 2 binding protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1199 (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1199-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1199-5p Tamoxifen+Fulvestrant resistant cell line (LCC9)

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