pre-miRNA Information
pre-miRNA hsa-mir-190b   
Genomic Coordinates chr1: 154193665 - 154193743
Description Homo sapiens miR-190b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-190b
Sequence 11| UGAUAUGUUUGAUAUUGGGUU |31
Evidence Not_experimental
Experiments
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FAM13B   
Synonyms ARHGAP49, C5orf5, FAM13B1, KHCHP, N61
Description family with sequence similarity 13 member B
Transcript NM_001101800   
Other Transcripts NM_001101801 , NM_016603   
Expression
Putative miRNA Targets on FAM13B
3'UTR of FAM13B
(miRNA target sites are highlighted)
>FAM13B|NM_001101800|3'UTR
   1 GATACGTTCCTTGAAAATTCATATCATAAAGTCAGTTGTATTCCTTGAAGCTATCATCGTGTGTACTTGGCTGGTACTTA
  81 AATTCGTTTTGTCAGGCACTCAGAGAATCTCATTTTGTACTTGGTTGTGGTGCCACTAAACAAAACAAATGATGGGAGAG
 161 TAAGTAGGCCCTCTCAAGGGAGCGTAAGTGATGTTCCATATTAACCACAGACTGTCCTCTCCACCTTTAGCAAACATATG
 241 GTTTACTTCATTGTTTTGTACTACAGATACATCCTTTTAGCAAAAGACTGGAATTTTATCCTTTCAACTTCAAGAACTTT
 321 GGAAATGCAAGCTTTTTGTTATTACCAACTTTTTGTTTCTCATTACTGAAGAAAATTGGAGGAAAATCTTCATACTGAAT
 401 TCTTCTGTTGCCTTTTTCTTACAGAATGACTGAAAATTTGAAAGAAAAGCCTATAAAAGTGCACATACGCAACTGTGTTC
 481 TCTGTTTTCCTAGAAAACCAAAATCAAACTGAGATTTCAAGTCGTACTATGGAACACCTTTCTGTTTAATTCCCAAAGTG
 561 ACATCTTCTCACAGGTAGTATGTTAGTAAAATTTTGCAATTCGCTGGTCACACAGCTCCCGGATGAAGATAACAGTTGGT
 641 AGACCAAAAGGTGACCTCGCTTAGTATATTGAAAACACACACCACACATCACACACAGAACTGAATCATACCACATGCTG
 721 CCTATGGGACTTCAGTTACTGTTTCCTGAGTTACTGTTTATCCGCTGGCAATGGTGTGATTTGTCTGGATCAGATCCGCG
 801 CTATTCCCCAACCCACCTCCAGATAATGTGAGAAAATAGCCATGTCAGTATGTAGGAACTCTGATGGTGCTCAGATTTGT
 881 GTGTTCAATCAATGGGCTTAAATCAGCAAAATATTATGCCTAAAGTAAATCTGTTCTTAACAAGGGCTCTACCACTGCAT
 961 TTTCACATGTACCTTCAGGGGGTTATCTTTTTTTTTTTCCCCTCCTATTTTAATCAGCAAAATCCATACCAAAACAACGA
1041 CAACAACGCCCTCTTAAGGGACCACCCTTTGGTCAATCATAACATGCTGTTTAAAGCAGCTGTTTACAGGATGTGTAGTG
1121 GTATGCCCCTTGTCATATACTCTTAGCATATCTTTTTTTCCTTTGGCTTTGCATGGCTTTTCTTCAGGTACTGTCTCGGT
1201 ATCATTCTGCTAATCATTGTTACAGAATGGTGACTTCATTTGTGCTAACAGTACAACAGCAGATTTGGGTCAGGCTTAAT
1281 CTAAGTGTTAACTTTTTTTTCTGGTGCTTTTTTGGATTGATGACTGTCTCACTTTGACTATACCCATGTTTTGCATGCAA
1361 TGACTCATGCATGGTTTTCTTAACTAGCTAATATTAACAATTTATTCCATATAAAAATGGAATTTTGCAACATCCTTTAA
1441 TAAGGTGAGGGAAGCATGAACCTCAGACTTCTGGCACTATTACATAGTAAGCACATGAAGTAGTTTGATAATAAATAGCA
1521 GTTCTAGTACTTCACATTTCACCCGTGTGTGCAATGCCTTTTTCTGGGGGGTGGGGGGTGAGGGAAAACCTGGTAGTGAA
1601 TGTGTAGTTGGGGAATAAAGAAAAGCACTAAATCCTGCCCTTTTTGTGTGGTTTCCTTTTGATACAACTAGGTTATTCAT
1681 AATGTATACCTAGAAAAGTGAAATTGAAAATACCAAAAGATGTATCATTTTTATTTGAATCCATCATGCAGTGTACATTT
1761 CAGATAATTTCCTTCAGTCTCCAGATAGGAGTGTATCCAAACATCTAATTTTATGTGCACTGTGTATCTTATATGAATGT
1841 TTTATTTTATATACCACATGCAAAAATGTCCATATGCACTATTTAAATGTTTTAAATAATATATTCCTTCTTTATAATGC
1921 TAAATCTATATGAGTACCATATTTTTATAAGTCAGTGGTCTGACTGGTTTCATTTTAGAATTAACAGCTGCTTCAATATG
2001 TTATTCAATGTTAATGTTTGGCTGTGAGTAGAATATGTAAAAGTGGCATGGCAGCACTTATGCTCTGTGACAGTATTGTG
2081 TGTCATAGTTGAGCAGTAGCTGGTAGAATTAGGCAGTTGGTGATAGTTTTACTTTGGTACAAATAAAAACTGTATATCTA
2161 TATACAAATAATATATAGATATATATGTCCACCAGTATAATGGCATTGCTGTGTCTGGCACTTCATTGTACAGACTTTTA
2241 TAATAAAAGAACTTGAAAGTTCTAAGTCATTGTAAATGTATGTTTGTTTTTCCACTGGGCTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uugGGUUAUAGUUUGUAUAgu 5'
             ||  || |||||||||  
Target 5' ccaCCTTTAGCAAACATATgg 3'
221 - 241 146.00 -12.10
2
miRNA  3' uugGGU-UAU-AG-UUUGUAUAGu 5'
             :|| ||| ||  |:|||||| 
Target 5' ttgTCATATACTCTTAGCATATCt 3'
1130 - 1153 138.00 -7.80
3
miRNA  3' uuggGUUAUA-GUUUGUAUAgu 5'
              :||||| :|:|:||||  
Target 5' caaaTAATATATAGATATATat 3'
2165 - 2186 129.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8491904 6 COSMIC
COSN30174325 33 COSMIC
COSN26975697 50 COSMIC
COSN30149979 53 COSMIC
COSN30504378 59 COSMIC
COSN31590845 64 COSMIC
COSM481976 85 COSMIC
COSM5938130 85 COSMIC
COSM5702804 87 COSMIC
COSM4819185 93 COSMIC
COSM7122512 101 COSMIC
COSM8050400 103 COSMIC
COSM6241613 132 COSMIC
COSN30493087 168 COSMIC
COSN30502088 178 COSMIC
COSN30093005 180 COSMIC
COSN30477347 205 COSMIC
COSN30109155 251 COSMIC
COSN9926699 311 COSMIC
COSN31527480 524 COSMIC
COSN26586917 602 COSMIC
COSN31959958 643 COSMIC
COSN26602028 793 COSMIC
COSN14769834 799 COSMIC
COSN27358707 988 COSMIC
COSN32056427 998 COSMIC
COSN31523030 1031 COSMIC
COSN29345980 1250 COSMIC
COSN31578869 1879 COSMIC
COSN31595753 1925 COSMIC
COSN28754299 2054 COSMIC
COSN19192234 2218 COSMIC
COSN7876786 2249 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1358930160 2 dbSNP
rs755992514 4 dbSNP
rs750386837 5 dbSNP
rs369454923 6 dbSNP
rs751795696 9 dbSNP
rs1420510779 10 dbSNP
rs1223114973 19 dbSNP
rs1324481359 30 dbSNP
rs1489004827 32 dbSNP
rs376178626 40 dbSNP
rs1225045020 42 dbSNP
rs764292104 53 dbSNP
rs373247757 56 dbSNP
rs1035120958 58 dbSNP
rs370070551 59 dbSNP
rs1162241282 61 dbSNP
rs373818342 62 dbSNP
rs1045080646 63 dbSNP
rs370407926 68 dbSNP
rs1468988069 70 dbSNP
rs373460054 74 dbSNP
rs1179051286 76 dbSNP
rs761294707 82 dbSNP
rs1373079387 84 dbSNP
rs200078301 85 dbSNP
rs1315083471 87 dbSNP
rs748991660 88 dbSNP
rs376480186 89 dbSNP
rs1258740314 94 dbSNP
rs1203074424 98 dbSNP
rs1266807055 101 dbSNP
rs144685038 105 dbSNP
rs745744896 108 dbSNP
rs1209901201 120 dbSNP
rs1248169310 121 dbSNP
rs781162016 122 dbSNP
rs371782450 123 dbSNP
rs1269564455 132 dbSNP
rs1228036808 136 dbSNP
rs751634370 137 dbSNP
rs1328077334 139 dbSNP
rs778038213 142 dbSNP
rs758505215 145 dbSNP
rs202233545 150 dbSNP
rs763124340 150 dbSNP
rs1338290323 153 dbSNP
rs1408613904 154 dbSNP
rs1396201574 156 dbSNP
rs940541368 158 dbSNP
rs1181112545 159 dbSNP
rs1221804323 164 dbSNP
rs373571725 169 dbSNP
rs765631397 170 dbSNP
rs1183073478 171 dbSNP
rs1445300266 173 dbSNP
rs1458823210 178 dbSNP
rs759994293 182 dbSNP
rs1347503440 183 dbSNP
rs371273291 184 dbSNP
rs1435913518 186 dbSNP
rs1476656254 198 dbSNP
rs183581373 206 dbSNP
rs931753617 212 dbSNP
rs921584617 217 dbSNP
rs1380099201 222 dbSNP
rs977840899 226 dbSNP
rs1286917487 231 dbSNP
rs978447634 239 dbSNP
rs966757137 240 dbSNP
rs1487022508 241 dbSNP
rs917605907 245 dbSNP
rs992464788 247 dbSNP
rs968267800 258 dbSNP
rs111747998 264 dbSNP
rs1257404628 270 dbSNP
rs529474865 273 dbSNP
rs1265133824 274 dbSNP
rs1249424735 280 dbSNP
rs1473439424 286 dbSNP
rs1182862516 287 dbSNP
rs1424328990 289 dbSNP
rs1216842177 311 dbSNP
rs1431533619 320 dbSNP
rs1178254990 324 dbSNP
rs1307203686 341 dbSNP
rs1359809220 341 dbSNP
rs1429414825 342 dbSNP
rs567853011 348 dbSNP
rs191748428 349 dbSNP
rs1214945845 362 dbSNP
rs956898847 376 dbSNP
rs1410776155 377 dbSNP
rs1363767349 379 dbSNP
rs761932584 386 dbSNP
rs1366030058 393 dbSNP
rs1216970351 402 dbSNP
rs546678274 406 dbSNP
rs1302862201 409 dbSNP
rs1347961743 411 dbSNP
rs1204066388 412 dbSNP
rs1282378389 417 dbSNP
rs372478250 419 dbSNP
rs1483932545 421 dbSNP
rs1005973683 423 dbSNP
rs951883982 424 dbSNP
rs1406685849 428 dbSNP
rs1338207279 432 dbSNP
rs564114888 433 dbSNP
rs1448906900 461 dbSNP
rs994276885 465 dbSNP
rs1023565552 467 dbSNP
rs994809870 468 dbSNP
rs1430815081 469 dbSNP
rs1170629736 470 dbSNP
rs1323227195 472 dbSNP
rs1348499959 473 dbSNP
rs899041552 475 dbSNP
rs1294612731 480 dbSNP
rs1430701441 481 dbSNP
rs545898880 484 dbSNP
rs1226979837 490 dbSNP
rs1041075917 491 dbSNP
rs531280171 496 dbSNP
rs187412806 499 dbSNP
rs890076936 511 dbSNP
rs1449632667 519 dbSNP
rs866374269 523 dbSNP
rs56124297 524 dbSNP
rs1464516920 529 dbSNP
rs1245509444 560 dbSNP
rs925461629 562 dbSNP
rs1450392928 565 dbSNP
rs1162880330 576 dbSNP
rs1042504673 578 dbSNP
rs1407405757 580 dbSNP
rs1480310969 592 dbSNP
rs1166152667 599 dbSNP
rs755554402 602 dbSNP
rs931701394 603 dbSNP
rs1366725188 604 dbSNP
rs1431073802 619 dbSNP
rs900271878 620 dbSNP
rs945177289 621 dbSNP
rs917569108 627 dbSNP
rs551828739 630 dbSNP
rs1328304844 632 dbSNP
rs1206733804 647 dbSNP
rs1289369919 650 dbSNP
rs7711607 656 dbSNP
rs947081384 658 dbSNP
rs959304605 659 dbSNP
rs915442062 664 dbSNP
rs544347055 666 dbSNP
rs139187964 673 dbSNP
rs1316999292 680 dbSNP
rs926501408 683 dbSNP
rs555642739 685 dbSNP
rs1240396071 695 dbSNP
rs1371936159 696 dbSNP
rs145927578 698 dbSNP
rs1463250195 700 dbSNP
rs143662048 707 dbSNP
rs1333120565 713 dbSNP
rs1141538 715 dbSNP
rs1425676779 717 dbSNP
rs1349632907 722 dbSNP
rs961524272 724 dbSNP
rs1290109447 736 dbSNP
rs1351537461 750 dbSNP
rs1199897206 756 dbSNP
rs1177269824 760 dbSNP
rs969414171 763 dbSNP
rs1023681657 764 dbSNP
rs1211864067 769 dbSNP
rs973335904 771 dbSNP
rs1251396669 772 dbSNP
rs914979592 778 dbSNP
rs1471796049 792 dbSNP
rs539080029 797 dbSNP
rs569495800 798 dbSNP
rs3777118 799 dbSNP
rs890391790 803 dbSNP
rs1001131950 811 dbSNP
rs1415875986 813 dbSNP
rs1313090495 814 dbSNP
rs1221480393 816 dbSNP
rs1407727105 823 dbSNP
rs1290165853 842 dbSNP
rs182224747 846 dbSNP
rs546994832 847 dbSNP
rs904012292 850 dbSNP
rs1347201886 852 dbSNP
rs1042598175 854 dbSNP
rs1359807369 861 dbSNP
rs1293902637 863 dbSNP
rs1207667302 868 dbSNP
rs945110556 870 dbSNP
rs568297439 881 dbSNP
rs546815173 887 dbSNP
rs1316251133 888 dbSNP
rs896201307 889 dbSNP
rs115109738 892 dbSNP
rs1173915079 907 dbSNP
rs1389121884 909 dbSNP
rs778489092 916 dbSNP
rs947166550 922 dbSNP
rs1386199204 933 dbSNP
rs1321486340 944 dbSNP
rs1441663613 947 dbSNP
rs570627432 967 dbSNP
rs1366393067 968 dbSNP
rs1230875103 972 dbSNP
rs1252314362 973 dbSNP
rs1356060342 978 dbSNP
rs1208624671 982 dbSNP
rs1270048871 988 dbSNP
rs891455501 998 dbSNP
rs1247038181 999 dbSNP
rs1447356722 999 dbSNP
rs930585714 999 dbSNP
rs1172075196 1001 dbSNP
rs1302080466 1003 dbSNP
rs1373482091 1003 dbSNP
rs1417882252 1003 dbSNP
rs1405965985 1004 dbSNP
rs1053229188 1005 dbSNP
rs1396522793 1007 dbSNP
rs3209743 1011 dbSNP
rs1441738099 1025 dbSNP
rs1320048505 1036 dbSNP
rs935571253 1038 dbSNP
rs1437605421 1039 dbSNP
rs971956756 1039 dbSNP
rs114637319 1046 dbSNP
rs748836713 1047 dbSNP
rs982209763 1048 dbSNP
rs1208645647 1060 dbSNP
rs545062568 1061 dbSNP
rs188296688 1072 dbSNP
rs1187941695 1076 dbSNP
rs1261936038 1082 dbSNP
rs1028359006 1105 dbSNP
rs916785791 1108 dbSNP
rs973504046 1110 dbSNP
rs531839685 1111 dbSNP
rs1461945920 1112 dbSNP
rs1158303416 1117 dbSNP
rs1386592584 1126 dbSNP
rs751278393 1136 dbSNP
rs544171311 1138 dbSNP
rs1455377971 1140 dbSNP
rs1001100927 1147 dbSNP
rs1401700430 1148 dbSNP
rs1014908201 1167 dbSNP
rs904136430 1173 dbSNP
rs1356490258 1175 dbSNP
rs1021631233 1177 dbSNP
rs756062841 1188 dbSNP
rs1286968440 1190 dbSNP
rs1326484381 1193 dbSNP
rs529239548 1197 dbSNP
rs563084070 1198 dbSNP
rs896664449 1199 dbSNP
rs561843547 1201 dbSNP
rs1030262488 1212 dbSNP
rs995972282 1215 dbSNP
rs752672068 1216 dbSNP
rs1056187317 1222 dbSNP
rs1203132209 1223 dbSNP
rs1475393876 1228 dbSNP
rs1181400567 1230 dbSNP
rs185197640 1232 dbSNP
rs1420973626 1234 dbSNP
rs1011314285 1242 dbSNP
rs1261228984 1245 dbSNP
rs1159842817 1246 dbSNP
rs1358652131 1247 dbSNP
rs1464785550 1249 dbSNP
rs754739984 1254 dbSNP
rs1314981342 1255 dbSNP
rs1376487238 1256 dbSNP
rs1409559461 1257 dbSNP
rs1306730866 1259 dbSNP
rs891565577 1265 dbSNP
rs1224823399 1271 dbSNP
rs1052756102 1274 dbSNP
rs1002958757 1280 dbSNP
rs1320718033 1282 dbSNP
rs1282266278 1289 dbSNP
rs906753141 1295 dbSNP
rs1048754844 1300 dbSNP
rs1223798550 1301 dbSNP
rs1281970554 1303 dbSNP
rs766260748 1304 dbSNP
rs919148130 1307 dbSNP
rs1177699233 1319 dbSNP
rs1424610388 1323 dbSNP
rs1381992971 1330 dbSNP
rs972395312 1338 dbSNP
rs1386328971 1345 dbSNP
rs572943788 1353 dbSNP
rs557580040 1358 dbSNP
rs1167175735 1360 dbSNP
rs181324666 1363 dbSNP
rs1428628603 1364 dbSNP
rs76629102 1368 dbSNP
rs1177220761 1373 dbSNP
rs1293422153 1374 dbSNP
rs1366324560 1399 dbSNP
rs1438015421 1401 dbSNP
rs954136067 1404 dbSNP
rs1348075670 1407 dbSNP
rs370275680 1409 dbSNP
rs1038299519 1413 dbSNP
rs1270699800 1419 dbSNP
rs979391657 1420 dbSNP
rs968041373 1422 dbSNP
rs575119790 1428 dbSNP
rs1427644565 1434 dbSNP
rs188803722 1444 dbSNP
rs1195503138 1456 dbSNP
rs1253697958 1472 dbSNP
rs1449154772 1473 dbSNP
rs1166919687 1476 dbSNP
rs1422140946 1479 dbSNP
rs1410838422 1481 dbSNP
rs1010246016 1484 dbSNP
rs907965246 1485 dbSNP
rs1348592447 1486 dbSNP
rs750764342 1489 dbSNP
rs983438422 1491 dbSNP
rs1327416253 1492 dbSNP
rs954696537 1495 dbSNP
rs1371080429 1501 dbSNP
rs1459906491 1503 dbSNP
rs1268014533 1506 dbSNP
rs960891243 1518 dbSNP
rs763069047 1519 dbSNP
rs923307693 1528 dbSNP
rs1332668740 1533 dbSNP
rs1215467913 1537 dbSNP
rs556948653 1544 dbSNP
rs1035620783 1545 dbSNP
rs1267982464 1548 dbSNP
rs1191339834 1550 dbSNP
rs184076564 1554 dbSNP
rs1181574364 1565 dbSNP
rs904985394 1566 dbSNP
rs1476508527 1568 dbSNP
rs964655010 1570 dbSNP
rs1166262960 1571 dbSNP
rs28603001 1572 dbSNP
rs1048805694 1573 dbSNP
rs192990294 1575 dbSNP
rs1021452301 1577 dbSNP
rs1011836024 1578 dbSNP
rs897503573 1579 dbSNP
rs955779895 1580 dbSNP
rs867317020 1581 dbSNP
rs1269098003 1590 dbSNP
rs1031839518 1595 dbSNP
rs911712274 1602 dbSNP
rs1050292433 1615 dbSNP
rs931809029 1621 dbSNP
rs1203404482 1623 dbSNP
rs1337553676 1628 dbSNP
rs779464543 1636 dbSNP
rs921308146 1639 dbSNP
rs762108592 1643 dbSNP
rs906869227 1646 dbSNP
rs867133692 1658 dbSNP
rs1486840295 1665 dbSNP
rs1189311133 1666 dbSNP
rs1044069285 1682 dbSNP
rs1474979623 1684 dbSNP
rs574812426 1686 dbSNP
rs1012434232 1688 dbSNP
rs78673694 1694 dbSNP
rs1156371950 1696 dbSNP
rs3777119 1697 dbSNP
rs190193993 1702 dbSNP
rs185601888 1705 dbSNP
rs1333059452 1713 dbSNP
rs1373425574 1714 dbSNP
rs1037844986 1718 dbSNP
rs879859366 1719 dbSNP
rs1242434810 1720 dbSNP
rs1349722311 1721 dbSNP
rs1183680167 1722 dbSNP
rs1462212883 1723 dbSNP
rs1281407474 1737 dbSNP
rs907915226 1740 dbSNP
rs754032099 1748 dbSNP
rs764232461 1749 dbSNP
rs1486872917 1761 dbSNP
rs1253494695 1779 dbSNP
rs1211976455 1781 dbSNP
rs770148753 1787 dbSNP
rs552385920 1791 dbSNP
rs923255548 1801 dbSNP
rs1436633311 1805 dbSNP
rs1244236684 1807 dbSNP
rs1234150649 1817 dbSNP
rs1382776350 1819 dbSNP
rs1316277876 1822 dbSNP
rs1172651826 1826 dbSNP
rs1392813177 1832 dbSNP
rs1436357698 1851 dbSNP
rs1369703444 1854 dbSNP
rs1454654683 1854 dbSNP
rs1389653448 1857 dbSNP
rs1334018737 1858 dbSNP
rs1330774690 1877 dbSNP
rs1328241436 1878 dbSNP
rs73790094 1883 dbSNP
rs1301545859 1884 dbSNP
rs1350244787 1888 dbSNP
rs569936919 1909 dbSNP
rs943246121 1917 dbSNP
rs1205267798 1931 dbSNP
rs1398901607 1933 dbSNP
rs914479231 1939 dbSNP
rs193210302 1947 dbSNP
rs1212182645 1958 dbSNP
rs1198108092 1960 dbSNP
rs754457222 1984 dbSNP
rs776007728 1985 dbSNP
rs1031535827 1988 dbSNP
rs1274264727 1991 dbSNP
rs969531660 1998 dbSNP
rs1192387774 2001 dbSNP
rs1250590686 2003 dbSNP
rs1384536332 2014 dbSNP
rs1193856657 2015 dbSNP
rs764266644 2015 dbSNP
rs529031580 2027 dbSNP
rs1372329521 2031 dbSNP
rs1460241443 2038 dbSNP
rs1169605115 2040 dbSNP
rs1397057066 2040 dbSNP
rs1027337625 2054 dbSNP
rs981142755 2061 dbSNP
rs1373257037 2065 dbSNP
rs994560198 2068 dbSNP
rs1297086426 2076 dbSNP
rs897478565 2077 dbSNP
rs971143191 2079 dbSNP
rs1022562583 2080 dbSNP
rs1229999466 2083 dbSNP
rs1230729105 2087 dbSNP
rs1036463620 2089 dbSNP
rs1008814659 2096 dbSNP
rs367804506 2103 dbSNP
rs1353439415 2111 dbSNP
rs1270781498 2116 dbSNP
rs890404902 2122 dbSNP
rs1012550125 2130 dbSNP
rs529174384 2131 dbSNP
rs73790093 2135 dbSNP
rs150368807 2136 dbSNP
rs528300795 2138 dbSNP
rs1043819100 2140 dbSNP
rs1162660740 2150 dbSNP
rs886600395 2152 dbSNP
rs1248747029 2154 dbSNP
rs1254802267 2154 dbSNP
rs1382980859 2157 dbSNP
rs1384129318 2158 dbSNP
rs772347079 2159 dbSNP
rs1340227589 2160 dbSNP
rs761947221 2161 dbSNP
rs1279105756 2163 dbSNP
rs1232044798 2164 dbSNP
rs1295610882 2164 dbSNP
rs913900601 2165 dbSNP
rs933375330 2167 dbSNP
rs1337767699 2168 dbSNP
rs1484729332 2171 dbSNP
rs1206516754 2173 dbSNP
rs1301450751 2175 dbSNP
rs1334674280 2179 dbSNP
rs564354919 2182 dbSNP
rs1185736607 2190 dbSNP
rs1402902203 2191 dbSNP
rs1475579471 2195 dbSNP
rs928181087 2196 dbSNP
rs1364675629 2225 dbSNP
rs759906192 2230 dbSNP
rs981008725 2239 dbSNP
rs1039016992 2242 dbSNP
rs1407055743 2245 dbSNP
rs1027808660 2262 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 51306.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuggguuauaguuuGUAUAGu 5'
                        |||||| 
Target 5' ----------aauuCAUAUCa 3'
1 - 11
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000033079.3 | 3UTR | AAUUCAUAUCAUAAAGUCAGUUGUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19783 ER- ER- breast cancer 0.366 4.5e-4 0.332 1.4e-3 79 Click to see details
GSE19536 Breast cancer 0.287 1.9e-3 0.251 5.9e-3 100 Click to see details
GSE28260 Renal cortex and medulla 0.72 2.8e-3 0.846 1.3e-4 13 Click to see details
GSE28544 Breast cancer 0.523 4.4e-3 0.505 5.9e-3 24 Click to see details
GSE19350 CNS germ cell tumors -0.685 7.0e-3 -0.096 3.8e-1 12 Click to see details
GSE19783 ER+ ER+ breast cancer -0.421 3.2e-2 -0.447 2.4e-2 20 Click to see details
GSE38226 Liver fibrosis 0.329 7.3e-2 0.066 3.9e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.199 1.7e-1 -0.283 8.5e-2 25 Click to see details
GSE17498 Multiple myeloma 0.145 1.9e-1 0.146 1.8e-1 40 Click to see details
GSE26953 Aortic valvular endothelial cells 0.183 2.0e-1 0.143 2.5e-1 24 Click to see details
GSE21687 Ependynoma primary tumors -0.074 2.8e-1 -0.010 4.7e-1 64 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.267 2.8e-1 -0.036 4.7e-1 7 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.101 3.4e-1 -0.233 1.6e-1 20 Click to see details
GSE32688 Pancreatic cancer 0.062 3.7e-1 0.048 4.0e-1 32 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.068 3.7e-1 -0.016 4.7e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.008 4.9e-1 0.284 9.5e-2 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRP 0.862 0.01 0.857 0.01 7 Click to see details
BRCA 0.279 0.01 0.315 0 72 Click to see details
KIRC -0.555 0.02 -0.522 0.03 13 Click to see details
STAD -0.767 0.07 -0.500 0.2 5 Click to see details
LIHC 0.293 0.12 0.269 0.14 18 Click to see details
HNSC -0.193 0.19 -0.204 0.18 23 Click to see details
UCEC -0.218 0.22 -0.271 0.16 15 Click to see details
KICH -0.454 0.22 -0.600 0.14 5 Click to see details
THCA 0.107 0.31 0.120 0.29 24 Click to see details
CHOL 0.231 0.38 0.400 0.3 4 Click to see details
LUSC 0.066 0.39 -0.072 0.38 19 Click to see details
LUAD -0.105 0.4 0.143 0.37 8 Click to see details
PRAD -0.051 0.41 -0.122 0.29 23 Click to see details
ESCA -0.129 0.44 0.000 0.5 4 Click to see details
ESCA -0.129 0.44 0.000 0.5 4 Click to see details
ESCA -0.129 0.44 0.000 0.5 4 Click to see details
ESCA -0.129 0.44 0.000 0.5 4 Click to see details
ESCA -0.129 0.44 0.000 0.5 4 Click to see details
ESCA -0.129 0.44 0.000 0.5 4 Click to see details
60 hsa-miR-190b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054581 IGF1 insulin like growth factor 1 4 1
MIRT066966 ATXN7L3B ataxin 7 like 3B 2 2
MIRT192449 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT250414 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT306294 KLHL24 kelch like family member 24 2 2
MIRT355845 SGMS2 sphingomyelin synthase 2 2 4
MIRT437770 MTMR6 myotubularin related protein 6 1 1
MIRT437771 MTMR6 myotubularin related protein 6 1 1
MIRT437772 Mtmr6 myotubularin related protein 6 1 1
MIRT444672 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446389 PCDHB11 protocadherin beta 11 2 2
MIRT446634 SDC3 syndecan 3 2 2
MIRT449410 TRIM5 tripartite motif containing 5 2 2
MIRT449560 GPC5 glypican 5 2 2
MIRT469928 PTPRJ protein tyrosine phosphatase, receptor type J 2 6
MIRT473736 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT474210 LDHA lactate dehydrogenase A 2 2
MIRT474583 KLF6 Kruppel like factor 6 2 2
MIRT476732 FOXN2 forkhead box N2 2 2
MIRT478455 DAB2 DAB2, clathrin adaptor protein 2 2
MIRT495327 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 4
MIRT498615 MTRNR2L10 MT-RNR2-like 10 2 12
MIRT501734 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT501849 MTRNR2L8 MT-RNR2-like 8 2 14
MIRT504678 CYGB cytoglobin 2 4
MIRT506517 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507984 BCL2L13 BCL2 like 13 2 4
MIRT508444 ZNF608 zinc finger protein 608 2 4
MIRT511366 IL6ST interleukin 6 signal transducer 2 4
MIRT520515 TRA2B transformer 2 beta homolog 2 2
MIRT524571 CALML4 calmodulin like 4 2 4
MIRT531896 INVS inversin 2 4
MIRT533916 TATDN2 TatD DNase domain containing 2 2 2
MIRT537503 FAM13B family with sequence similarity 13 member B 2 2
MIRT541689 CCDC160 coiled-coil domain containing 160 2 8
MIRT544419 ZNF460 zinc finger protein 460 2 4
MIRT544615 CSDE1 cold shock domain containing E1 2 2
MIRT545076 IL7R interleukin 7 receptor 2 2
MIRT545849 ZNF264 zinc finger protein 264 2 4
MIRT547436 MED4 mediator complex subunit 4 2 2
MIRT550157 ZNF223 zinc finger protein 223 2 4
MIRT553948 STAMBP STAM binding protein 2 2
MIRT554395 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT555667 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT564193 PM20D2 peptidase M20 domain containing 2 2 2
MIRT566792 MKL2 MKL1/myocardin like 2 2 2
MIRT566843 LRRC58 leucine rich repeat containing 58 2 2
MIRT572516 KIAA0232 KIAA0232 2 2
MIRT607428 NOTCH2NL notch 2 N-terminal like 2 10
MIRT627779 RAB30 RAB30, member RAS oncogene family 2 2
MIRT635159 ENO4 enolase family member 4 2 2
MIRT642159 ADCYAP1R1 ADCYAP receptor type I 3 2
MIRT646205 DUSP10 dual specificity phosphatase 10 2 2
MIRT657007 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT665817 TMEM161B transmembrane protein 161B 2 2
MIRT667488 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT707098 ZNF850 zinc finger protein 850 2 2
MIRT708719 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT735521 HUS1 HUS1 checkpoint clamp component 3 0
MIRT736644 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-190b Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-190b Atorvastatin approved 60823 Microarray PC3 prostate cancer cells 23936432 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-190b Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)

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