pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-5p
Sequence 6| UUGUGUGAGUACAGAGAGCAUC |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs763248242 2 dbSNP
rs186621048 3 dbSNP
rs1455267770 12 dbSNP
rs1170462641 19 dbSNP
rs1435853423 22 dbSNP
Putative Targets

Gene Information
Gene Symbol EZR   
Synonyms CVIL, CVL, HEL-S-105, VIL2
Description ezrin
Transcript NM_001111077   
Other Transcripts NM_003379   
Expression
Putative miRNA Targets on EZR
3'UTR of EZR
(miRNA target sites are highlighted)
>EZR|NM_001111077|3'UTR
   1 CAGCCAGGCCAGGACCAAGGGCAGAGGGGTGCTCATAGCGGGCGCTGCCAGCCCCGCCACGCTTGTGTCTTTAGTGCTCC
  81 AAGTCTAGGAACTCCCTCAGATCCCAGTTCCTTTAGAAAGCAGTTACCCAACAGAAACATTCTGGGCTGGGAACCAGGGA
 161 GGCGCCCTGGTTTGTTTTCCCCAGTTGTAATAGTGCCAAGCAGGCCTGATTCTCGCGATTATTCTCGAATCACCTCCTGT
 241 GTTGTGCTGGGAGCAGGACTGATTGAATTACGGAAAATGCCTGTAAAGTCTGAGTAAGAAACTTCATGCTGGCCTGTGTG
 321 ATACAAGAGTCAGCATCATTAAAGGAAACGTGGCAGGACTTCCATCTGTGCCATACTTGTTCTGTATTCGAAATGAGCTC
 401 AAATTGATTTTTTAATTTCTATGAAGGATCCATCTTTGTATATTTACATGCTTAGAGGGGTGAAAATTATTTTGGAAATT
 481 GAGTCTGAAGCACTCTCGCACACACAGTGATTCCCTCCTCCCGTCACTCCACGCAGCTGGCAGAGAGCACAGTGATCACC
 561 AGCGTGAGTGGTGGAGGAGGACACTTGGATTTTTTTTTTTGTTTTTTTTTTTTTTGCTTAACAGTTTTAGAATACATTGT
 641 ACTTATACACCTTATTAATGATCAGCTATATACTATTTATATACAAGTGATAATACAGATTTGTAACATTAGTTTTAAAA
 721 AGGGAAAGTTTTGTTCTGTATATTTTGTTACCTTTTACAGAATAAAAGAATTACATATGAAAAACCCTCTAAACCATGGC
 801 ACTTGATGTGATGTGGCAGGAGGGCAGTGGTGGAGCTGGACCTGCCTGCTGCAGTCACGTGTAAACAGGATTATTATTAG
 881 TGTTTTATGCATGTAATGGACTATGCACACTTTTAATTTTGTCAGATTCACACATGCCACTATGAGCTTTCAGACTCCAG
 961 CTGTGAAGAGACTCTGTTTGCTTGTGTTTGTTTGTTTGCAGTCTCTCTCTGCCATGGCCTTGGCAGGCTGCTGGAAGGCA
1041 GCTTGTGGAGGCCGTTGGTTCCGCCCACTCATTCCTTCTCGTGCACTGCTTTCTCCTTCACAGCTAAGATGCCATGTGCA
1121 GGTGGATTCCATGCCGCAGACATGAAATAAAAGCTTTGCAAAGGCACGAAGCAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuacgaGAGACA---UGAGUGUGUu 5'
                :|:|||   |:||||||| 
Target 5' ttttaaTTTTGTCAGATTCACACAt 3'
911 - 935 156.00 -13.40
2
miRNA  3' cuacgaGAGACAUGAGUGUGUu 5'
                | :||||||:|:||| 
Target 5' agaataCATTGTACTTATACAc 3'
629 - 650 136.00 -14.40
3
miRNA  3' cuacgagAGACAU-----GAGUGUGUu 5'
                 |||| |     |||:|||| 
Target 5' aattgagTCTGAAGCACTCTCGCACAc 3'
477 - 503 135.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26975550 1 COSMIC
COSN30536303 15 COSMIC
COSN28198022 26 COSMIC
COSN28880584 38 COSMIC
COSN26975553 40 COSMIC
COSN30106663 60 COSMIC
COSN20103592 64 COSMIC
COSN30181082 77 COSMIC
COSN30181058 85 COSMIC
COSN30479415 104 COSMIC
COSN30104704 134 COSMIC
COSN26552030 349 COSMIC
COSN26649307 390 COSMIC
COSN27020794 492 COSMIC
COSN32198942 509 COSMIC
COSN20103584 590 COSMIC
COSN20103590 590 COSMIC
COSN20560601 591 COSMIC
COSN20091470 598 COSMIC
COSN23987613 600 COSMIC
COSN17023023 601 COSMIC
COSN30163550 602 COSMIC
COSN7696489 612 COSMIC
COSN7696488 613 COSMIC
COSN20103583 615 COSMIC
COSN19656008 616 COSMIC
COSN26581555 689 COSMIC
COSN24750864 750 COSMIC
COSN31523093 764 COSMIC
COSN31517899 768 COSMIC
COSN19661699 829 COSMIC
COSN31488493 923 COSMIC
COSN20103575 985 COSMIC
COSN1327829 1001 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs768336741 3 dbSNP
rs2230144 5 dbSNP
rs1290517234 6 dbSNP
rs200919889 7 dbSNP
rs750431779 7 dbSNP
rs1210651452 8 dbSNP
rs779987639 9 dbSNP
rs755580961 10 dbSNP
rs749975221 11 dbSNP
rs1334856887 15 dbSNP
rs780696470 16 dbSNP
rs1392658404 17 dbSNP
rs757001899 18 dbSNP
rs768022562 18 dbSNP
rs371215514 19 dbSNP
rs2230145 22 dbSNP
rs762087641 23 dbSNP
rs765580487 24 dbSNP
rs762210286 26 dbSNP
rs1453292145 28 dbSNP
rs1362318743 30 dbSNP
rs774821624 32 dbSNP
rs987296583 33 dbSNP
rs201308333 34 dbSNP
rs1252376011 35 dbSNP
rs754359350 36 dbSNP
rs370515638 39 dbSNP
rs56233811 40 dbSNP
rs773479905 43 dbSNP
rs372850570 44 dbSNP
rs1258608921 45 dbSNP
rs1004892293 46 dbSNP
rs1329244671 47 dbSNP
rs950959151 50 dbSNP
rs762025818 51 dbSNP
rs41267143 55 dbSNP
rs769395453 56 dbSNP
rs532665522 58 dbSNP
rs1013688860 59 dbSNP
rs560211236 60 dbSNP
rs540272246 61 dbSNP
rs1055311873 62 dbSNP
rs753553182 63 dbSNP
rs34894691 65 dbSNP
rs3062709 66 dbSNP
rs779523318 66 dbSNP
rs5881286 69 dbSNP
rs1209454095 72 dbSNP
rs1420703088 73 dbSNP
rs1353779870 75 dbSNP
rs1001669322 77 dbSNP
rs904275027 78 dbSNP
rs1030492982 80 dbSNP
rs749936264 81 dbSNP
rs1312861215 83 dbSNP
rs796443530 85 dbSNP
rs1334694215 87 dbSNP
rs577592023 88 dbSNP
rs1335125091 90 dbSNP
rs1237249397 94 dbSNP
rs1311376336 95 dbSNP
rs1354321585 96 dbSNP
rs79494479 97 dbSNP
rs1277891421 99 dbSNP
rs945730331 100 dbSNP
rs1202426986 104 dbSNP
rs1017632676 106 dbSNP
rs1437331571 114 dbSNP
rs1382775820 123 dbSNP
rs1440837598 123 dbSNP
rs187595394 126 dbSNP
rs756400625 127 dbSNP
rs1303078644 129 dbSNP
rs1466582 131 dbSNP
rs544519538 133 dbSNP
rs1312486977 136 dbSNP
rs1444021997 137 dbSNP
rs575417627 139 dbSNP
rs1420615511 140 dbSNP
rs763084832 141 dbSNP
rs775749130 146 dbSNP
rs933236058 149 dbSNP
rs999168713 150 dbSNP
rs866744065 155 dbSNP
rs1299051635 157 dbSNP
rs1313760496 160 dbSNP
rs558753283 163 dbSNP
rs41267141 164 dbSNP
rs1196896251 169 dbSNP
rs1240080055 171 dbSNP
rs77551523 172 dbSNP
rs191909538 173 dbSNP
rs1265829349 179 dbSNP
rs536303202 180 dbSNP
rs1463713110 182 dbSNP
rs1172238169 183 dbSNP
rs1209696894 190 dbSNP
rs1439453644 195 dbSNP
rs1488443428 195 dbSNP
rs1285694099 196 dbSNP
rs567290131 197 dbSNP
rs1349787229 198 dbSNP
rs1294572452 199 dbSNP
rs1265975682 200 dbSNP
rs908197573 200 dbSNP
rs550560050 202 dbSNP
rs1353327286 203 dbSNP
rs1292492747 204 dbSNP
rs1260193986 206 dbSNP
rs1400811429 206 dbSNP
rs1318723534 208 dbSNP
rs1025167940 209 dbSNP
rs1264269743 211 dbSNP
rs992342676 214 dbSNP
rs75522256 215 dbSNP
rs569427464 216 dbSNP
rs534201251 217 dbSNP
rs1423819981 226 dbSNP
rs1034225601 227 dbSNP
rs1393662085 229 dbSNP
rs746879555 229 dbSNP
rs1288112256 234 dbSNP
rs1460394976 235 dbSNP
rs1401566748 239 dbSNP
rs1280353300 240 dbSNP
rs376264050 241 dbSNP
rs1417548219 249 dbSNP
rs1001049983 250 dbSNP
rs1227869010 254 dbSNP
rs1310635949 255 dbSNP
rs1194882254 256 dbSNP
rs188249634 263 dbSNP
rs1243496421 267 dbSNP
rs1219162267 268 dbSNP
rs964800606 271 dbSNP
rs377270609 272 dbSNP
rs1253160384 280 dbSNP
rs1215451669 281 dbSNP
rs1423850640 290 dbSNP
rs879552434 291 dbSNP
rs1358484678 292 dbSNP
rs1491363320 292 dbSNP
rs1021415135 303 dbSNP
rs532589131 306 dbSNP
rs78423323 307 dbSNP
rs1298567902 309 dbSNP
rs1009890335 313 dbSNP
rs891498802 314 dbSNP
rs1051444324 316 dbSNP
rs182678633 320 dbSNP
rs1447533344 321 dbSNP
rs1301271905 323 dbSNP
rs370481018 324 dbSNP
rs1309174758 330 dbSNP
rs376089037 341 dbSNP
rs540332956 349 dbSNP
rs1039271296 350 dbSNP
rs998804603 359 dbSNP
rs778855911 360 dbSNP
rs1441532120 363 dbSNP
rs1268650366 365 dbSNP
rs971262467 369 dbSNP
rs530108801 372 dbSNP
rs941912571 373 dbSNP
rs1430345724 379 dbSNP
rs1024105752 382 dbSNP
rs1328047580 384 dbSNP
rs1378465026 385 dbSNP
rs556142898 389 dbSNP
rs571928743 390 dbSNP
rs929406367 393 dbSNP
rs1412494307 395 dbSNP
rs1174236946 401 dbSNP
rs917893449 402 dbSNP
rs1361043397 403 dbSNP
rs544266885 404 dbSNP
rs1330749222 409 dbSNP
rs1171755511 410 dbSNP
rs1375395176 414 dbSNP
rs1412014464 414 dbSNP
rs1449614013 414 dbSNP
rs1417889138 418 dbSNP
rs1005701668 419 dbSNP
rs1217778349 424 dbSNP
rs886802494 427 dbSNP
rs1312408771 428 dbSNP
rs558493857 432 dbSNP
rs1235791508 438 dbSNP
rs764346678 438 dbSNP
rs1033971613 440 dbSNP
rs756341222 443 dbSNP
rs1395140808 445 dbSNP
rs1194979252 446 dbSNP
rs1430948464 447 dbSNP
rs1458682455 448 dbSNP
rs929559783 450 dbSNP
rs1467053266 453 dbSNP
rs1252301262 455 dbSNP
rs980008490 457 dbSNP
rs968270784 458 dbSNP
rs1174101217 460 dbSNP
rs1215834673 465 dbSNP
rs1427600440 468 dbSNP
rs1021782206 471 dbSNP
rs1470413892 472 dbSNP
rs1170114798 475 dbSNP
rs1009964826 477 dbSNP
rs1332650357 481 dbSNP
rs1467209785 481 dbSNP
rs752986803 481 dbSNP
rs535630940 482 dbSNP
rs1029967917 484 dbSNP
rs1214169210 487 dbSNP
rs575525766 488 dbSNP
rs539209916 493 dbSNP
rs759835172 495 dbSNP
rs767735267 496 dbSNP
rs545246114 497 dbSNP
rs1370836074 498 dbSNP
rs990277552 498 dbSNP
rs1038973287 499 dbSNP
rs1247037530 500 dbSNP
rs537411820 500 dbSNP
rs1193245578 501 dbSNP
rs1421687175 502 dbSNP
rs575518963 505 dbSNP
rs1168566087 506 dbSNP
rs1390722077 507 dbSNP
rs553173289 507 dbSNP
rs924652368 507 dbSNP
rs538585930 508 dbSNP
rs774780360 508 dbSNP
rs1275916890 514 dbSNP
rs1341983345 515 dbSNP
rs929354049 517 dbSNP
rs1408961573 521 dbSNP
rs1283067061 522 dbSNP
rs918009950 522 dbSNP
rs190961486 523 dbSNP
rs1487849669 525 dbSNP
rs971295433 527 dbSNP
rs938065846 529 dbSNP
rs926851433 530 dbSNP
rs1489387298 531 dbSNP
rs1194040542 532 dbSNP
rs557259061 532 dbSNP
rs1394012410 533 dbSNP
rs968721669 535 dbSNP
rs1386331073 541 dbSNP
rs1177703219 542 dbSNP
rs958561551 548 dbSNP
rs1230937883 552 dbSNP
rs914031289 555 dbSNP
rs1382407916 560 dbSNP
rs1017161966 562 dbSNP
rs988313798 563 dbSNP
rs567353153 564 dbSNP
rs778173861 566 dbSNP
rs997165055 568 dbSNP
rs964437810 569 dbSNP
rs1488470424 571 dbSNP
rs1017701605 572 dbSNP
rs1205965008 573 dbSNP
rs556942680 575 dbSNP
rs887694436 577 dbSNP
rs1047522078 579 dbSNP
rs1307848940 580 dbSNP
rs1225952045 581 dbSNP
rs1244355283 582 dbSNP
rs1439596741 584 dbSNP
rs1157273570 585 dbSNP
rs1382587235 586 dbSNP
rs536638794 587 dbSNP
rs1046736606 589 dbSNP
rs1057038 591 dbSNP
rs78209284 592 dbSNP
rs1279296895 593 dbSNP
rs796715452 593 dbSNP
rs879489218 593 dbSNP
rs369250141 595 dbSNP
rs1311301494 596 dbSNP
rs552606861 597 dbSNP
rs369966256 598 dbSNP
rs1457342203 599 dbSNP
rs3734470 599 dbSNP
rs71551137 600 dbSNP
rs1198597130 601 dbSNP
rs1420055870 601 dbSNP
rs368225383 601 dbSNP
rs377166576 601 dbSNP
rs73797100 601 dbSNP
rs763247116 601 dbSNP
rs764589034 601 dbSNP
rs375119541 602 dbSNP
rs900837999 602 dbSNP
rs1263939452 603 dbSNP
rs1314315981 603 dbSNP
rs1064306 604 dbSNP
rs1432547849 604 dbSNP
rs1374286360 605 dbSNP
rs1159252301 606 dbSNP
rs1209673769 607 dbSNP
rs1265672606 610 dbSNP
rs546759566 612 dbSNP
rs1405713754 613 dbSNP
rs867192651 614 dbSNP
rs3205303 615 dbSNP
rs943586503 615 dbSNP
rs1244745449 616 dbSNP
rs1291671883 616 dbSNP
rs1392645720 616 dbSNP
rs1436204622 616 dbSNP
rs1457314105 616 dbSNP
rs560786138 616 dbSNP
rs755881410 616 dbSNP
rs1264140345 617 dbSNP
rs763318338 617 dbSNP
rs777183573 617 dbSNP
rs1262088512 618 dbSNP
rs1195261686 620 dbSNP
rs1419649050 620 dbSNP
rs1487091053 620 dbSNP
rs1475406978 621 dbSNP
rs1422680600 622 dbSNP
rs1370051777 624 dbSNP
rs889311838 624 dbSNP
rs1425140511 627 dbSNP
rs1259437303 630 dbSNP
rs1360191275 635 dbSNP
rs1398352471 636 dbSNP
rs1186040518 637 dbSNP
rs993326509 638 dbSNP
rs1485496837 641 dbSNP
rs1261335633 645 dbSNP
rs896574263 645 dbSNP
rs1227743467 646 dbSNP
rs561027845 646 dbSNP
rs1056499297 648 dbSNP
rs1362199041 648 dbSNP
rs1315582674 649 dbSNP
rs1351910763 651 dbSNP
rs1217523020 654 dbSNP
rs551003348 655 dbSNP
rs1234499558 658 dbSNP
rs1482646972 662 dbSNP
rs530817967 669 dbSNP
rs950092625 673 dbSNP
rs1291863118 674 dbSNP
rs1412511564 676 dbSNP
rs1354448187 677 dbSNP
rs1288899829 679 dbSNP
rs1421240271 679 dbSNP
rs917239034 681 dbSNP
rs1346004263 682 dbSNP
rs1342988460 683 dbSNP
rs1447461688 684 dbSNP
rs1158288357 685 dbSNP
rs1044117568 689 dbSNP
rs1461932888 689 dbSNP
rs1419736842 690 dbSNP
rs991389563 691 dbSNP
rs1491312853 692 dbSNP
rs958850175 692 dbSNP
rs1491162853 693 dbSNP
rs1284601444 695 dbSNP
rs1016781071 696 dbSNP
rs1207476364 698 dbSNP
rs984327934 698 dbSNP
rs771293041 701 dbSNP
rs1262701338 708 dbSNP
rs914189724 710 dbSNP
rs951168007 712 dbSNP
rs1484926525 723 dbSNP
rs1471075269 725 dbSNP
rs760771134 725 dbSNP
rs1409049342 728 dbSNP
rs955547402 730 dbSNP
rs1025856599 733 dbSNP
rs923001790 733 dbSNP
rs1174168630 735 dbSNP
rs1241665855 736 dbSNP
rs975828223 740 dbSNP
rs1375321835 747 dbSNP
rs1470311151 747 dbSNP
rs1214826078 750 dbSNP
rs1444890788 750 dbSNP
rs1337643304 751 dbSNP
rs997929012 752 dbSNP
rs1217150868 755 dbSNP
rs772744129 758 dbSNP
rs1233087263 764 dbSNP
rs142940365 765 dbSNP
rs548821368 766 dbSNP
rs1197449939 768 dbSNP
rs1295834210 770 dbSNP
rs1205005441 771 dbSNP
rs1439466317 771 dbSNP
rs1245942971 774 dbSNP
rs1476889904 774 dbSNP
rs769462237 775 dbSNP
rs544995210 776 dbSNP
rs889336862 778 dbSNP
rs1170045727 785 dbSNP
rs1395029891 787 dbSNP
rs1026228942 793 dbSNP
rs1054637660 795 dbSNP
rs1349692137 797 dbSNP
rs1197555070 800 dbSNP
rs1304648893 812 dbSNP
rs993274140 815 dbSNP
rs1345731642 816 dbSNP
rs183353914 817 dbSNP
rs903347481 832 dbSNP
rs1396641710 837 dbSNP
rs1215108177 838 dbSNP
rs747702651 844 dbSNP
rs1449657513 848 dbSNP
rs1224438340 858 dbSNP
rs776375052 858 dbSNP
rs1490569227 859 dbSNP
rs1460740381 861 dbSNP
rs559620209 866 dbSNP
rs1371441200 869 dbSNP
rs917268750 872 dbSNP
rs1169016484 873 dbSNP
rs991420629 876 dbSNP
rs1043723726 880 dbSNP
rs371447562 880 dbSNP
rs576583423 880 dbSNP
rs1305311699 883 dbSNP
rs937282213 884 dbSNP
rs1399043359 886 dbSNP
rs1315726896 888 dbSNP
rs909753211 890 dbSNP
rs376924518 892 dbSNP
rs1430738262 896 dbSNP
rs1283594824 898 dbSNP
rs1354152226 901 dbSNP
rs746861343 903 dbSNP
rs542820892 905 dbSNP
rs573826928 906 dbSNP
rs1470188176 909 dbSNP
rs1216194274 911 dbSNP
rs951325220 913 dbSNP
rs1025471428 914 dbSNP
rs1237457521 915 dbSNP
rs976519235 916 dbSNP
rs1165974454 919 dbSNP
rs1052715379 921 dbSNP
rs1419418063 921 dbSNP
rs965099459 921 dbSNP
rs1386677740 923 dbSNP
rs1400843086 925 dbSNP
rs1481163582 927 dbSNP
rs1380548056 933 dbSNP
rs1454543943 934 dbSNP
rs569466166 940 dbSNP
rs1375898839 942 dbSNP
rs1237613938 946 dbSNP
rs1253495939 949 dbSNP
rs780139947 952 dbSNP
rs1353081900 953 dbSNP
rs1229130525 958 dbSNP
rs1278042196 973 dbSNP
rs549589310 976 dbSNP
rs964126397 977 dbSNP
rs1244214441 978 dbSNP
rs1180089711 981 dbSNP
rs772413840 981 dbSNP
rs889376884 984 dbSNP
rs1296178066 985 dbSNP
rs1470291989 985 dbSNP
rs1171600111 986 dbSNP
rs1403298123 986 dbSNP
rs1399458010 988 dbSNP
rs1470639566 988 dbSNP
rs201224844 988 dbSNP
rs1308834434 989 dbSNP
rs1389506441 989 dbSNP
rs1373017753 990 dbSNP
rs1336083337 991 dbSNP
rs1000444177 992 dbSNP
rs1386207302 994 dbSNP
rs1396902969 995 dbSNP
rs1321510918 996 dbSNP
rs1231839147 999 dbSNP
rs1457693422 999 dbSNP
rs374475404 999 dbSNP
rs55954930 999 dbSNP
rs59351155 999 dbSNP
rs79446163 999 dbSNP
rs1194479985 1000 dbSNP
rs1253143893 1001 dbSNP
rs975989385 1003 dbSNP
rs943099739 1004 dbSNP
rs1426694308 1005 dbSNP
rs1481172399 1007 dbSNP
rs1176509712 1009 dbSNP
rs910328435 1010 dbSNP
rs1014306928 1011 dbSNP
rs1396961447 1011 dbSNP
rs984472679 1011 dbSNP
rs1385944602 1013 dbSNP
rs1275122617 1020 dbSNP
rs1055725556 1021 dbSNP
rs937380589 1022 dbSNP
rs951739388 1024 dbSNP
rs368306689 1027 dbSNP
rs1283969777 1038 dbSNP
rs1306952602 1040 dbSNP
rs909878108 1046 dbSNP
rs1481169272 1049 dbSNP
rs567379153 1052 dbSNP
rs1026176740 1053 dbSNP
rs556771508 1054 dbSNP
rs148576700 1056 dbSNP
rs1261858277 1057 dbSNP
rs1426160276 1059 dbSNP
rs190701352 1062 dbSNP
rs777666969 1063 dbSNP
rs557709273 1065 dbSNP
rs1022823323 1067 dbSNP
rs1161418340 1067 dbSNP
rs1253041818 1070 dbSNP
rs1303936582 1072 dbSNP
rs1194471519 1074 dbSNP
rs957976539 1076 dbSNP
rs1057386 1078 dbSNP
rs796171966 1080 dbSNP
rs111574012 1081 dbSNP
rs1002574743 1083 dbSNP
rs1300677434 1084 dbSNP
rs1232414054 1091 dbSNP
rs1057416 1093 dbSNP
rs144850990 1096 dbSNP
rs1241089803 1097 dbSNP
rs1052453931 1100 dbSNP
rs934191323 1101 dbSNP
rs1308821861 1102 dbSNP
rs1389463748 1104 dbSNP
rs1423142665 1106 dbSNP
rs1181637385 1112 dbSNP
rs576333574 1116 dbSNP
rs1424999427 1120 dbSNP
rs546821150 1121 dbSNP
rs1344830604 1129 dbSNP
rs1451796746 1130 dbSNP
rs536448084 1131 dbSNP
rs1436863913 1133 dbSNP
rs910285077 1134 dbSNP
rs567477734 1135 dbSNP
rs113399795 1136 dbSNP
rs1454725757 1137 dbSNP
rs1283189442 1144 dbSNP
rs1314740356 1165 dbSNP
rs111720300 1166 dbSNP
rs918902001 1167 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 7430.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuacgagagacaUGAGUGUGUu 5'
                      |:||||||| 
Target 5' ------------AUUCACACAu 3'
1 - 10
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000337147.7 | 3UTR | AUUCACACAUGCCACUAUGAGCUUUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
140 hsa-miR-6818-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071796 RNF11 ring finger protein 11 2 2
MIRT077120 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 4
MIRT079951 RNF138 ring finger protein 138 2 2
MIRT102968 EN2 engrailed homeobox 2 2 4
MIRT115694 MGRN1 mahogunin ring finger 1 2 2
MIRT121074 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT143171 GLYR1 glyoxylate reductase 1 homolog 2 2
MIRT145635 LASP1 LIM and SH3 protein 1 2 2
MIRT282026 ARID3B AT-rich interaction domain 3B 2 6
MIRT301684 EP300 E1A binding protein p300 2 2
MIRT328627 AKIRIN1 akirin 1 2 2
MIRT340977 IPO5 importin 5 2 2
MIRT371401 STC2 stanniocalcin 2 2 2
MIRT378008 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT445185 CCDC88C coiled-coil domain containing 88C 2 2
MIRT447120 DUSP16 dual specificity phosphatase 16 2 2
MIRT449153 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT450200 ABHD15 abhydrolase domain containing 15 2 2
MIRT453853 ZNF12 zinc finger protein 12 2 2
MIRT459077 LSM1 LSM1 homolog, mRNA degradation associated 2 2
MIRT461304 MRPS27 mitochondrial ribosomal protein S27 2 2
MIRT464137 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT468114 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT471401 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT478220 DDX52 DExD-box helicase 52 2 2
MIRT479695 CCNT1 cyclin T1 2 2
MIRT479779 CCND1 cyclin D1 2 2
MIRT484980 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485016 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485034 TMEM189 transmembrane protein 189 2 8
MIRT485221 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490143 TERF2IP TERF2 interacting protein 2 6
MIRT508908 DOK6 docking protein 6 2 6
MIRT513877 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT515966 C9orf156 tRNA methyltransferase O 2 4
MIRT517892 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT518660 CLVS2 clavesin 2 2 4
MIRT520027 YOD1 YOD1 deubiquitinase 2 6
MIRT523884 EPHA5 EPH receptor A5 2 4
MIRT529237 PORCN porcupine O-acyltransferase 2 2
MIRT535337 PFN1 profilin 1 2 2
MIRT537532 EZR ezrin 2 2
MIRT537695 ELOVL6 ELOVL fatty acid elongase 6 2 2
MIRT538494 CLOCK clock circadian regulator 2 2
MIRT539140 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT541380 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT545018 PLP1 proteolipid protein 1 2 2
MIRT547732 KIF23 kinesin family member 23 2 4
MIRT548257 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT550372 MYLK3 myosin light chain kinase 3 2 2
MIRT551867 TMEM47 transmembrane protein 47 2 2
MIRT552289 SNAP29 synaptosome associated protein 29 2 2
MIRT552902 VSNL1 visinin like 1 2 8
MIRT552990 VAMP4 vesicle associated membrane protein 4 2 4
MIRT554729 RHOC ras homolog family member C 2 2
MIRT555301 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT556832 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT557523 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT558238 EDA2R ectodysplasin A2 receptor 2 2
MIRT558920 CBX1 chromobox 1 2 2
MIRT559198 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT559611 AMER1 APC membrane recruitment protein 1 2 2
MIRT559769 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT564648 ZNF487P zinc finger protein 487 1 1
MIRT565856 NHS NHS actin remodeling regulator 2 2
MIRT569044 ZNF655 zinc finger protein 655 2 2
MIRT569154 SIGMAR1 sigma non-opioid intracellular receptor 1 2 2
MIRT569166 DMD dystrophin 2 2
MIRT569205 CASZ1 castor zinc finger 1 2 2
MIRT569264 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT569431 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT569476 CTSE cathepsin E 2 2
MIRT570232 NCAN neurocan 2 2
MIRT570519 SHH sonic hedgehog 2 2
MIRT570680 FZD5 frizzled class receptor 5 2 2
MIRT572161 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT575142 Cd93 CD93 antigen 2 3
MIRT575644 Mitf microphthalmia-associated transcription factor 2 3
MIRT575653 Synpo synaptopodin 2 4
MIRT576375 Runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 2 2
MIRT576388 Fhl2 four and a half LIM domains 2 2 3
MIRT576413 Pla2g16 phospholipase A2, group XVI 2 2
MIRT576697 Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 3
MIRT606872 CHST11 carbohydrate sulfotransferase 11 2 4
MIRT606940 GFRA1 GDNF family receptor alpha 1 2 6
MIRT607025 ZEB1 zinc finger E-box binding homeobox 1 2 2
MIRT607028 PPY pancreatic polypeptide 2 4
MIRT607081 MITF melanogenesis associated transcription factor 2 3
MIRT607769 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2 6
MIRT607881 SATB1 SATB homeobox 1 2 2
MIRT607996 BTBD9 BTB domain containing 9 2 2
MIRT608124 TSC22D2 TSC22 domain family member 2 2 2
MIRT608132 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT608209 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT608337 SPN sialophorin 2 2
MIRT608416 SYNPO synaptopodin 2 5
MIRT608459 CD93 CD93 molecule 2 3
MIRT608555 SBK1 SH3 domain binding kinase 1 2 6
MIRT608585 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 4
MIRT608785 JAKMIP2 janus kinase and microtubule interacting protein 2 2 4
MIRT608791 CDH12 cadherin 12 2 2
MIRT608816 ONECUT3 one cut homeobox 3 2 6
MIRT608876 CNTF ciliary neurotrophic factor 2 6
MIRT608881 CLIC6 chloride intracellular channel 6 2 2
MIRT608894 ZNF860 zinc finger protein 860 2 2
MIRT608954 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609007 HPS3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 3
MIRT609045 INVS inversin 2 4
MIRT619037 CASS4 Cas scaffolding protein family member 4 2 2
MIRT625226 RPSAP58 ribosomal protein SA pseudogene 58 2 4
MIRT625545 GABRB2 gamma-aminobutyric acid type A receptor beta2 subunit 2 2
MIRT627333 TTLL7 tubulin tyrosine ligase like 7 2 2
MIRT627954 NLK nemo like kinase 2 2
MIRT629280 UNC13A unc-13 homolog A 2 2
MIRT634982 TNFAIP8 TNF alpha induced protein 8 2 2
MIRT646129 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT646370 SLC22A6 solute carrier family 22 member 6 2 2
MIRT652743 TGFA transforming growth factor alpha 2 4
MIRT653984 SEMA6A semaphorin 6A 2 2
MIRT660038 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT663504 NKAPL NFKB activating protein like 2 4
MIRT667117 OCIAD2 OCIA domain containing 2 2 2
MIRT683747 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT683922 SLC43A3 solute carrier family 43 member 3 2 2
MIRT684101 LHFP LHFPL tetraspan subfamily member 6 2 2
MIRT684224 FGF14 fibroblast growth factor 14 2 2
MIRT685560 SRD5A3 steroid 5 alpha-reductase 3 2 2
MIRT687408 NRXN1 neurexin 1 2 2
MIRT687467 NHSL2 NHS like 2 2 2
MIRT687695 LEPREL1 prolyl 3-hydroxylase 2 1 1
MIRT688094 GLRA3 glycine receptor alpha 3 2 2
MIRT688255 FHL2 four and a half LIM domains 2 2 3
MIRT688851 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT700293 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT704679 CHST2 carbohydrate sulfotransferase 2 2 2
MIRT706392 PPID peptidylprolyl isomerase D 2 2
MIRT707388 SLC35F6 solute carrier family 35 member F6 2 2
MIRT707509 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT709808 AR androgen receptor 2 2
MIRT715491 MAZ MYC associated zinc finger protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6818-5p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6818-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6818-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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