miRTarBase - #MIRT538076


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pre-miRNA Information
pre-miRNA hsa-mir-4778   
Genomic Coordinates chr2: 66358249 - 66358328
Description Homo sapiens miR-4778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4778-3p
Sequence 51| UCUUCUUCCUUUGCAGAGUUGA |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs936001904 2 dbSNP
rs925922703 3 dbSNP
rs184768286 8 dbSNP
rs1249073833 10 dbSNP
rs977504360 13 dbSNP
rs192300002 18 dbSNP
Putative Targets

Gene Information
Gene Symbol DIAPH2   
Synonyms DIA, DIA2, DRF2, POF, POF2, POF2A
Description diaphanous related formin 2
Transcript NM_006729   
Other Transcripts NM_007309   
Expression
Putative miRNA Targets on DIAPH2
3'UTR of DIAPH2
(miRNA target sites are highlighted)		 
>DIAPH2|NM_006729|3'UTR
   1 TTCCTGATGCCAAAGAATATGAAAATATTTAAGTAAAAACAAAATGATGCATTTTGAGAAGAACAAAGTGTGCACTCAGC
  81 GGCTGGAAAGGAAATAAGTGCATTTCTGCAAAGATCAAGATAAGCTGGATGAAGTAGTGTGCATTTGTAATACTATTGCA
 161 AGACTCCTCCCACAATTATTCTAATCTGAACACAGTTATCAGGATTACAAAATGTGTTCCATTTTAGTGTAAAGATGTGT
 241 ATCATTTGTAATTGTGTGTGACCTGACTGTGATGATGGAAGTGTAAGAAATTGAAGAGTTCTAAGGCTTTCAAAAACACT
 321 CAGTCAAAAATTTAAAATCTTAAATGTGTAAGTCACCCCCACCAAAAACAAAAGAGAAGAAAAAGAATAGAAAGAATTAT
 401 CCAGTGTCAGCTTCCAATCCCTAGTACATATATAATAGAAAAGGGCCAAGAAAAATATGCATCTTGATTTGGAGAGAGGC
 481 TAATATTATGCACACTGTAAGAGAAGCCATTTTGGAAATTCACGAAAGTACTGCTCCACCCCAGTTGAGTTATTTAGAAT
 561 TTTATCTCAAGTGAAAGCTGATGGATTCATCTGCTTTGGCTGAAATTAAACTTATCATTAGTCTAGCTAGCATTTCAGCA
 641 TGATATTGCAAGCACTTCTCATTGCTAAAAATAAATAAACCAAAGTTTAACCGAATCAGTTAGGGAAAGTGATTTAAACT
 721 TTATTTAAAGAGGTATTTTCTAATTATGCACAGATATCTACTTTATACAAATACTTTATATGGCTATTTTTGAGAAAACC
 801 CTCACATTTTAATGTTTATGCTAGGGATGAACCTGAAAATTCTATTACGTTTATTTAGATTTCAAAGGCAAATATTGATT
 881 CCTATGCTCTGTGGTTTATTTCTTTTTTCTATTGCTTCTTTCTCCCTTGAGTCCCTTGAAGGCAGGGAATAGACTTCTAG
 961 AAAACCTGAGAGGAAAAAGAATTCTTTTTACAGGAGGCAGCAGAAAACTGTCTGAAAGGTCAATTGTTTTATCTCCCTTT
1041 CCACTCTCTTTCCAATTTCACTTTGGTGGTCTGAAGAAGAAAAAGAAATTTTATGTATGTATGTGTAAATATGTGTATAT
1121 ATTTCTATCTCTTGCTACAATAATTCCAACTAAGTGAACTTCTCAATTATCATCATACTTACTTACCTTATATTAACAAA
1201 TTAAGATGATGCTGCCAAAACAAGTCTAGCAGGGAAAACAGGTTCTACATTTTTCTTAAATAAATTAGGGAGTAAAAGTT
1281 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aguUGAGACGUUUC---CUUCUUCu 5'
             |||:|| : :|   ||||||| 
Target 5' ttcACTTTG-GTGGTCTGAAGAAGa 3'
 1057 - 1080 150.00 -12.80
2 
miRNA  3' agUUGAGACGUUUCCUUCUUCu 5'
            ||| ||| |:||||| ||| 
Target 5' aaAAC-CTG-AGAGGAAAAAGa 3'
 961 - 980 138.00 -15.00
3 
miRNA  3' aguugagacgUUUC-CUUCUUcu 5'
                    |||| ||||||  
Target 5' accaaaaacaAAAGAGAAGAAaa 3'
 361 - 383 132.00 -8.20
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs181002103 2 dbSNP
rs772225644 4 dbSNP
rs775423060 6 dbSNP
rs773409603 11 dbSNP
rs762787947 12 dbSNP
rs760811055 21 dbSNP
rs770964767 27 dbSNP
rs1478107836 29 dbSNP
rs377303638 31 dbSNP
rs1195138656 35 dbSNP
rs759909049 41 dbSNP
rs929183736 44 dbSNP
rs367706272 45 dbSNP
rs1296793548 46 dbSNP
rs752933181 47 dbSNP
rs1351309549 48 dbSNP
rs761566952 51 dbSNP
rs1288867072 52 dbSNP
rs1298008224 53 dbSNP
rs1048984002 59 dbSNP
rs777755069 61 dbSNP
rs752093350 64 dbSNP
rs1164376381 65 dbSNP
rs1387175956 65 dbSNP
rs1444269038 65 dbSNP
rs1490144328 66 dbSNP
rs757827318 69 dbSNP
rs781467769 72 dbSNP
rs1416744223 76 dbSNP
rs1157774788 77 dbSNP
rs1490679303 81 dbSNP
rs573367312 82 dbSNP
rs1291915674 94 dbSNP
rs1002867921 99 dbSNP
rs1221214872 100 dbSNP
rs1380160177 102 dbSNP
rs938404225 110 dbSNP
rs20384 111 dbSNP
rs1305555223 114 dbSNP
rs1327446561 120 dbSNP
rs956027114 132 dbSNP
rs1011813611 140 dbSNP
rs201053713 143 dbSNP
rs1436266426 144 dbSNP
rs1298911275 145 dbSNP
rs1055568522 149 dbSNP
rs1424147978 152 dbSNP
rs894240982 153 dbSNP
rs1169932133 158 dbSNP
rs1475587352 169 dbSNP
rs1372297150 173 dbSNP
rs1191371093 174 dbSNP
rs1481392454 174 dbSNP
rs1269580934 176 dbSNP
rs20391 177 dbSNP
rs1449442572 190 dbSNP
rs1274662725 231 dbSNP
rs1308643203 241 dbSNP
rs1196029018 242 dbSNP
rs775216474 243 dbSNP
rs1360333995 249 dbSNP
rs1005878622 252 dbSNP
rs1347912031 253 dbSNP
rs1284525774 263 dbSNP
rs1248074204 268 dbSNP
rs1404404223 268 dbSNP
rs1329433903 277 dbSNP
rs1289556788 279 dbSNP
rs1358441653 283 dbSNP
rs376103815 292 dbSNP
rs185289029 295 dbSNP
rs1234219818 298 dbSNP
rs1395448287 313 dbSNP
rs773795229 317 dbSNP
rs1479460043 320 dbSNP
rs993416246 327 dbSNP
rs868328311 340 dbSNP
rs1476721418 348 dbSNP
rs1243209555 350 dbSNP
rs57230163 364 dbSNP
rs79669248 364 dbSNP
rs867351020 364 dbSNP
rs1030544347 369 dbSNP
rs1383947426 370 dbSNP
rs1326177165 371 dbSNP
rs1264284750 375 dbSNP
rs1219166659 379 dbSNP
rs1342914863 380 dbSNP
rs1017353676 381 dbSNP
rs1281375370 381 dbSNP
rs1443091298 382 dbSNP
rs1405093511 383 dbSNP
rs1329638839 389 dbSNP
rs1454366504 389 dbSNP
rs1406564704 392 dbSNP
rs1175534065 395 dbSNP
rs966149981 396 dbSNP
rs772143526 406 dbSNP
rs1412718625 418 dbSNP
rs918898612 421 dbSNP
rs115470442 422 dbSNP
rs114993080 423 dbSNP
rs773086800 428 dbSNP
rs1469214633 433 dbSNP
rs1018340538 446 dbSNP
rs964123189 449 dbSNP
rs1209974525 450 dbSNP
rs948579235 450 dbSNP
rs1021617682 461 dbSNP
rs1044654425 463 dbSNP
rs907043530 475 dbSNP
rs1353152478 484 dbSNP
rs760571003 484 dbSNP
rs191377732 490 dbSNP
rs977717066 499 dbSNP
rs1053213806 501 dbSNP
rs752933655 502 dbSNP
rs763142676 503 dbSNP
rs1011615615 504 dbSNP
rs1399598478 508 dbSNP
rs1378393647 512 dbSNP
rs1214876495 513 dbSNP
rs1021867909 525 dbSNP
rs1165046285 529 dbSNP
rs1444891236 539 dbSNP
rs890083550 540 dbSNP
rs1384281945 541 dbSNP
rs1181612619 543 dbSNP
rs1305616322 559 dbSNP
rs1203335539 563 dbSNP
rs41304482 573 dbSNP
rs1217153786 586 dbSNP
rs763925203 592 dbSNP
rs1284009857 602 dbSNP
rs777973185 610 dbSNP
rs745776139 611 dbSNP
rs1226395954 612 dbSNP
rs915656244 612 dbSNP
rs751593773 616 dbSNP
rs1020159362 618 dbSNP
rs965589931 624 dbSNP
rs148998397 642 dbSNP
rs183083530 644 dbSNP
rs363761 655 dbSNP
rs1304408577 656 dbSNP
rs1422092650 657 dbSNP
rs763229337 661 dbSNP
rs756435810 674 dbSNP
rs775112495 683 dbSNP
rs1408613690 690 dbSNP
rs1162334546 694 dbSNP
rs897502828 694 dbSNP
rs1407146154 698 dbSNP
rs929178218 698 dbSNP
rs1051703436 700 dbSNP
rs984460040 702 dbSNP
rs780328619 704 dbSNP
rs1490553177 706 dbSNP
rs1334795944 707 dbSNP
rs1007378902 713 dbSNP
rs1308966849 717 dbSNP
rs1339747813 719 dbSNP
rs760498440 720 dbSNP
rs1273475861 725 dbSNP
rs948610337 726 dbSNP
rs1271895003 727 dbSNP
rs899923031 729 dbSNP
rs1405020382 733 dbSNP
rs980046603 737 dbSNP
rs1291363999 741 dbSNP
rs928434291 751 dbSNP
rs1356589509 755 dbSNP
rs1283481759 756 dbSNP
rs1171800896 759 dbSNP
rs776282187 759 dbSNP
rs938542947 761 dbSNP
rs1201169765 771 dbSNP
rs1179282337 772 dbSNP
rs1433787264 773 dbSNP
rs1011627539 775 dbSNP
rs1053180861 776 dbSNP
rs748960898 781 dbSNP
rs1447144238 785 dbSNP
rs1197776289 795 dbSNP
rs1217091458 797 dbSNP
rs891910511 800 dbSNP
rs1224056982 813 dbSNP
rs761248694 820 dbSNP
rs977850307 824 dbSNP
rs1298583011 826 dbSNP
rs947369441 834 dbSNP
rs1043115374 849 dbSNP
rs751640248 850 dbSNP
rs1398575206 851 dbSNP
rs200799096 851 dbSNP
rs869034026 851 dbSNP
rs188418037 852 dbSNP
rs1019876965 864 dbSNP
rs1421027787 869 dbSNP
rs901322730 873 dbSNP
rs1178277648 874 dbSNP
rs747678190 876 dbSNP
rs960602866 895 dbSNP
rs1204170689 899 dbSNP
rs1482872387 899 dbSNP
rs1481551128 900 dbSNP
rs1174631770 901 dbSNP
rs994318977 910 dbSNP
rs1308005046 928 dbSNP
rs1237512475 946 dbSNP
rs1375093784 950 dbSNP
rs1401543660 955 dbSNP
rs1401405155 956 dbSNP
rs1397019389 957 dbSNP
rs1026016219 966 dbSNP
rs1301667538 976 dbSNP
rs772088108 996 dbSNP
rs941726619 998 dbSNP
rs950504902 1011 dbSNP
rs973162634 1027 dbSNP
rs1317845126 1037 dbSNP
rs1438092681 1042 dbSNP
rs1387366981 1045 dbSNP
rs1005934541 1052 dbSNP
rs1015843596 1056 dbSNP
rs191702756 1057 dbSNP
rs755499971 1058 dbSNP
rs918901315 1063 dbSNP
rs1253977162 1069 dbSNP
rs928967759 1073 dbSNP
rs1343395609 1076 dbSNP
rs201828538 1080 dbSNP
rs1051894526 1084 dbSNP
rs41312556 1086 dbSNP
rs1347228034 1092 dbSNP
rs1245970905 1099 dbSNP
rs776355350 1102 dbSNP
rs1221299424 1106 dbSNP
rs1208760678 1120 dbSNP
rs890369175 1123 dbSNP
rs200302908 1124 dbSNP
rs1417979237 1127 dbSNP
rs1367675060 1128 dbSNP
rs1350739611 1137 dbSNP
rs1164106005 1141 dbSNP
rs943319084 1142 dbSNP
rs1366499604 1146 dbSNP
rs1195187978 1147 dbSNP
rs1478118533 1151 dbSNP
rs1262445047 1152 dbSNP
rs1224992417 1154 dbSNP
rs201569155 1159 dbSNP
rs363764 1159 dbSNP
rs199612583 1163 dbSNP
rs1490714538 1164 dbSNP
rs1038824783 1174 dbSNP
rs1487599581 1176 dbSNP
rs1356046699 1178 dbSNP
rs363792 1185 dbSNP
rs1264078188 1187 dbSNP
rs138211068 1188 dbSNP
rs1270036679 1191 dbSNP
rs1319170089 1192 dbSNP
rs1490953603 1192 dbSNP
rs928598697 1193 dbSNP
rs1398211365 1195 dbSNP
rs761908947 1199 dbSNP
rs187869889 1210 dbSNP
rs192453186 1212 dbSNP
rs1388246555 1234 dbSNP
rs1470530388 1236 dbSNP
rs988683667 1237 dbSNP
rs1466010995 1246 dbSNP
rs1422815781 1249 dbSNP
rs1011595023 1264 dbSNP
rs183793127 1269 dbSNP
rs913314256 1271 dbSNP
rs1246819918 1277 dbSNP
rs754603045 1278 dbSNP
rs1303759368 1279 dbSNP
rs1367174495 1282 dbSNP
rs1198812131 1283 dbSNP
rs1200904389 1283 dbSNP
rs1021647481 1284 dbSNP
rs1217337775 1285 dbSNP
rs1347163685 1291 dbSNP
rs1275537517 1294 dbSNP
rs903307252 1296 dbSNP
rs187689206 1298 dbSNP
rs1043179547 1299 dbSNP
rs1322412671 1299 dbSNP
rs1336017756 1300 dbSNP
rs778070246 1301 dbSNP
rs1329175207 1308 dbSNP
rs942743187 1309 dbSNP
rs1470931165 1310 dbSNP
rs1425850740 1317 dbSNP
rs142806012 1324 dbSNP
rs901464582 1327 dbSNP
rs1476792129 1328 dbSNP
rs1365166915 1330 dbSNP
rs1178875425 1334 dbSNP
rs757952574 1335 dbSNP
rs1237986761 1337 dbSNP
rs1352421460 1343 dbSNP
rs1444611316 1348 dbSNP
rs1240012762 1349 dbSNP
rs1293198632 1351 dbSNP
rs753527359 1353 dbSNP
rs1342981524 1356 dbSNP
rs1047183847 1358 dbSNP
rs1208459222 1362 dbSNP
rs1311653236 1373 dbSNP
rs1266858985 1375 dbSNP
rs777474020 1375 dbSNP
rs1438620688 1376 dbSNP
rs1450004849 1379 dbSNP
rs746930782 1385 dbSNP
rs960280453 1392 dbSNP
rs1359670137 1401 dbSNP
rs770778912 1402 dbSNP
rs1333491456 1405 dbSNP
rs756880749 1405 dbSNP
rs1005903692 1410 dbSNP
rs1236428079 1412 dbSNP
rs1177123667 1414 dbSNP
rs1439206038 1414 dbSNP
rs1474016080 1415 dbSNP
rs192728203 1423 dbSNP
rs1387038983 1424 dbSNP
rs199686249 1430 dbSNP
rs363794 1430 dbSNP
rs397895872 1430 dbSNP
rs56835549 1430 dbSNP
rs867708140 1430 dbSNP
rs72541378 1433 dbSNP
rs866423480 1435 dbSNP
rs201352136 1437 dbSNP
rs1217505637 1451 dbSNP
rs970116588 1465 dbSNP
rs1162440164 1467 dbSNP
rs796072774 1468 dbSNP
rs1023110610 1481 dbSNP
rs1229804195 1483 dbSNP
rs1162761214 1486 dbSNP
rs768879909 1497 dbSNP
rs1036016528 1503 dbSNP
rs1445770945 1505 dbSNP
rs973591288 1508 dbSNP
rs363795 1511 dbSNP
rs918995926 1511 dbSNP
rs138840510 1514 dbSNP
rs950554104 1514 dbSNP
rs1165100981 1517 dbSNP
rs1411287577 1518 dbSNP
rs1407369291 1520 dbSNP
rs745380395 1526 dbSNP
rs762067893 1535 dbSNP
rs1181739936 1536 dbSNP
rs767567989 1537 dbSNP
rs773350635 1539 dbSNP
rs1472085131 1543 dbSNP
rs761181631 1544 dbSNP
rs913044264 1546 dbSNP
rs1194477522 1556 dbSNP
rs1488039508 1560 dbSNP
rs968550213 1563 dbSNP
rs1224048688 1569 dbSNP
rs946996524 1575 dbSNP
rs1322055594 1576 dbSNP
rs1288901277 1577 dbSNP
rs1226445304 1583 dbSNP
rs1452752277 1590 dbSNP
rs1278841671 1592 dbSNP
rs1337783239 1608 dbSNP
rs1398834975 1608 dbSNP
rs1294880941 1610 dbSNP
rs943274575 1615 dbSNP
rs1385622125 1620 dbSNP
rs766812280 1621 dbSNP
rs978826910 1621 dbSNP
rs1426400703 1622 dbSNP
rs915184132 1624 dbSNP
rs1242993354 1627 dbSNP
rs1265211711 1657 dbSNP
rs1340584092 1671 dbSNP
rs1421611621 1675 dbSNP
rs911332868 1677 dbSNP
rs754184683 1679 dbSNP
rs1041085636 1685 dbSNP
rs1256455010 1699 dbSNP
rs903274486 1700 dbSNP
rs999348530 1708 dbSNP
rs1217971442 1711 dbSNP
rs1315476442 1722 dbSNP
rs1302740903 1725 dbSNP
rs1184324413 1733 dbSNP
rs1244829358 1734 dbSNP
rs1219350607 1735 dbSNP
rs922601774 1740 dbSNP
rs1291493097 1743 dbSNP
rs1439092956 1750 dbSNP
rs1332580067 1752 dbSNP
rs1371896660 1754 dbSNP
rs1465580034 1754 dbSNP
rs755330731 1757 dbSNP
rs1433909798 1758 dbSNP
rs1186828110 1760 dbSNP
rs184734557 1766 dbSNP
rs1441273821 1768 dbSNP
rs1463374676 1768 dbSNP
rs1238587099 1770 dbSNP
rs1168027826 1776 dbSNP
rs1197835584 1776 dbSNP
rs1456362534 1776 dbSNP
rs1210195120 1782 dbSNP
rs190063931 1783 dbSNP
rs1399129293 1785 dbSNP
rs1311122391 1786 dbSNP
rs1298660169 1787 dbSNP
rs752376403 1789 dbSNP
rs1379512302 1790 dbSNP
rs1338147332 1796 dbSNP
rs1403336422 1799 dbSNP
rs1047320698 1815 dbSNP
rs1394959079 1818 dbSNP
rs1394796593 1821 dbSNP
rs1466563640 1827 dbSNP
rs758183541 1832 dbSNP
rs756460820 1834 dbSNP
rs749422390 1835 dbSNP
rs1171957688 1836 dbSNP
rs1381196704 1840 dbSNP
rs895817362 1840 dbSNP
rs1177773011 1841 dbSNP
rs777352061 1843 dbSNP
rs1013144887 1846 dbSNP
rs1023203843 1850 dbSNP
rs1482619645 1863 dbSNP
rs888586830 1864 dbSNP
rs963651897 1865 dbSNP
rs182078519 1866 dbSNP
rs1037839633 1868 dbSNP
rs950455880 1869 dbSNP
rs905652607 1874 dbSNP
rs1397148718 1879 dbSNP
rs1379144029 1883 dbSNP
rs1265069515 1898 dbSNP
rs1361399192 1898 dbSNP
rs987633139 1899 dbSNP
rs911540459 1906 dbSNP
rs1199778633 1908 dbSNP
rs1262366425 1913 dbSNP
rs1370013351 1919 dbSNP
rs1165331618 1921 dbSNP
rs1430035815 1924 dbSNP
rs780056362 1924 dbSNP
rs1255365965 1925 dbSNP
rs184483297 1928 dbSNP
rs923965239 1930 dbSNP
rs895488816 1931 dbSNP
rs1261944764 1932 dbSNP
rs1010126813 1933 dbSNP
rs781021521 1936 dbSNP
rs915153061 1938 dbSNP
rs1020239489 1941 dbSNP
rs1422395234 1954 dbSNP
rs1267584010 1956 dbSNP
rs1246038360 1962 dbSNP
rs1321639812 1968 dbSNP
rs1292044887 1969 dbSNP
rs968519157 1987 dbSNP
rs745855940 1990 dbSNP
rs1341219589 1992 dbSNP
rs978656302 1994 dbSNP
rs1178228928 1995 dbSNP
rs769452360 1997 dbSNP
rs189625691 2001 dbSNP
rs748362465 2003 dbSNP
rs1386355600 2004 dbSNP
rs934734303 2017 dbSNP
rs1477823550 2019 dbSNP
rs1057467094 2021 dbSNP
rs370525879 2022 dbSNP
rs752241067 2023 dbSNP
rs1190460253 2030 dbSNP
rs1452944854 2033 dbSNP
rs1296753772 2048 dbSNP
rs895925026 2049 dbSNP
rs1224354172 2050 dbSNP
rs1468331087 2052 dbSNP
rs1271751487 2053 dbSNP
rs977243397 2058 dbSNP
rs772289350 2059 dbSNP
rs1366130513 2060 dbSNP
rs1044450104 2062 dbSNP
rs929992034 2066 dbSNP
rs982982942 2071 dbSNP
rs1232660151 2074 dbSNP
rs1466056035 2076 dbSNP
rs910158924 2076 dbSNP
rs1486813086 2077 dbSNP
rs1399511722 2079 dbSNP
rs199832683 2081 dbSNP
rs899411372 2082 dbSNP
rs1490463633 2083 dbSNP
rs1197734475 2085 dbSNP
rs20385 2086 dbSNP
rs867542101 2087 dbSNP
rs1422649888 2090 dbSNP
rs1432052302 2096 dbSNP
rs141479268 2113 dbSNP
rs1458579396 2117 dbSNP
rs181918821 2119 dbSNP
rs1364822533 2127 dbSNP
rs995088837 2128 dbSNP
rs1422050822 2129 dbSNP
rs1347231812 2130 dbSNP
rs139011679 2130 dbSNP
rs1447330720 2130 dbSNP
rs398122178 2130 dbSNP
rs1045272218 2131 dbSNP
rs905368640 2137 dbSNP
rs866867918 2142 dbSNP
rs746896296 2143 dbSNP
rs868640010 2144 dbSNP
rs776974465 2148 dbSNP
rs1405991444 2150 dbSNP
rs1009093742 2154 dbSNP
rs760140943 2155 dbSNP
rs1171592183 2160 dbSNP
rs1019098545 2162 dbSNP
rs1381817166 2166 dbSNP
rs964529457 2169 dbSNP
rs1341622407 2176 dbSNP
rs1232749932 2179 dbSNP
rs1180290201 2182 dbSNP
rs1444162479 2183 dbSNP
rs895469113 2196 dbSNP
rs1279448283 2201 dbSNP
rs1009927567 2213 dbSNP
rs765684361 2216 dbSNP
rs904473945 2220 dbSNP
rs1345990047 2224 dbSNP
rs1288498212 2226 dbSNP
rs1240533668 2232 dbSNP
rs1021920532 2238 dbSNP
rs1307778003 2243 dbSNP
rs1450157635 2245 dbSNP
rs1341046779 2253 dbSNP
rs967905735 2256 dbSNP
rs1318879281 2257 dbSNP
rs1412452097 2258 dbSNP
rs1158885668 2259 dbSNP
rs1362046515 2259 dbSNP
rs1000528139 2262 dbSNP
rs977993300 2265 dbSNP
rs34597846 2266 dbSNP
rs1237829934 2271 dbSNP
rs1018067056 2278 dbSNP
rs185333093 2279 dbSNP
rs1187295855 2285 dbSNP
rs762635485 2285 dbSNP
rs35721694 2294 dbSNP
rs1265529569 2302 dbSNP
rs1224487652 2303 dbSNP
rs976834450 2306 dbSNP
rs1281863778 2314 dbSNP
rs1229865650 2323 dbSNP
rs917313064 2326 dbSNP
rs1292655182 2337 dbSNP
rs1487963051 2341 dbSNP
rs948819713 2352 dbSNP
rs768606755 2354 dbSNP
rs1298384721 2357 dbSNP
rs1177486781 2368 dbSNP
rs34606543 2376 dbSNP
rs1252049376 2378 dbSNP
rs763859648 2380 dbSNP
rs1029731208 2385 dbSNP
rs930851989 2387 dbSNP
rs33998253 2389 dbSNP
rs1048430251 2391 dbSNP
rs36016414 2396 dbSNP
rs1474242933 2407 dbSNP
rs1425897292 2408 dbSNP
rs1177294575 2409 dbSNP
rs751507611 2411 dbSNP
rs886724079 2423 dbSNP
rs1485645252 2426 dbSNP
rs1240652560 2427 dbSNP
rs1223482598 2433 dbSNP
rs1380254660 2437 dbSNP
rs747787733 2449 dbSNP
rs1211776900 2469 dbSNP
rs951365700 2478 dbSNP
rs1278254246 2488 dbSNP
rs200630018 2492 dbSNP
rs935386807 2494 dbSNP
rs1167364629 2500 dbSNP
rs1009474047 2520 dbSNP
rs1019151295 2521 dbSNP
rs756688275 2533 dbSNP
rs1325760955 2537 dbSNP
rs1460315041 2538 dbSNP
rs1403131761 2542 dbSNP
rs776539791 2544 dbSNP
rs780801299 2548 dbSNP
rs900222568 2552 dbSNP
rs995891000 2556 dbSNP
rs1193146945 2571 dbSNP
rs1478211864 2585 dbSNP
rs189298295 2590 dbSNP
rs763319762 2592 dbSNP
rs1021887742 2595 dbSNP
rs967706281 2608 dbSNP
rs981434991 2615 dbSNP
rs1457589357 2619 dbSNP
rs977750291 2624 dbSNP
rs756106940 2640 dbSNP
rs1031322243 2643 dbSNP
rs1280248350 2645 dbSNP
rs1379177695 2646 dbSNP
rs1444683371 2658 dbSNP
rs1369848824 2662 dbSNP
rs772566733 2676 dbSNP
rs926790485 2678 dbSNP
rs1379750459 2689 dbSNP
rs1299259213 2690 dbSNP
rs540676690 2696 dbSNP
rs1352872351 2714 dbSNP
rs1178447754 2719 dbSNP
rs960689181 2733 dbSNP
rs150552518 2750 dbSNP
rs1441328681 2751 dbSNP
rs1229763444 2752 dbSNP
rs1287455666 2753 dbSNP
rs774367287 2753 dbSNP
rs916418418 2757 dbSNP
rs1320966740 2758 dbSNP
rs1204742944 2759 dbSNP
rs1252756887 2767 dbSNP
rs895605470 2776 dbSNP
rs1232481974 2778 dbSNP
rs762546373 2787 dbSNP
rs759671686 2795 dbSNP
rs1041369393 2797 dbSNP
rs1177466563 2799 dbSNP
rs948747651 2803 dbSNP
rs1391348142 2821 dbSNP
rs772235880 2823 dbSNP
rs1238037214 2828 dbSNP
rs1304630387 2829 dbSNP
rs1445748218 2843 dbSNP
rs767444752 2845 dbSNP
rs1172011536 2849 dbSNP
rs1375014053 2849 dbSNP
rs1415545916 2849 dbSNP
rs980192815 2858 dbSNP
rs1364183923 2864 dbSNP
rs1158165937 2868 dbSNP
rs778004407 2870 dbSNP
rs1258254944 2875 dbSNP
rs753232414 2889 dbSNP
rs1188025332 2896 dbSNP
rs149318911 2900 dbSNP
rs1254880803 2902 dbSNP
rs1423645103 2905 dbSNP
rs1489448648 2911 dbSNP
rs1171337079 2923 dbSNP
rs1402769870 2944 dbSNP
rs764490799 2945 dbSNP
rs1330780926 2947 dbSNP
rs1047759284 2952 dbSNP
rs1040039989 2954 dbSNP
rs770895553 2959 dbSNP
rs944980796 2960 dbSNP
rs1378149107 2963 dbSNP
rs1040909741 2978 dbSNP
rs1402052448 2981 dbSNP
rs900692255 2988 dbSNP
rs181335721 2989 dbSNP
rs998450624 2990 dbSNP
rs1370056835 3008 dbSNP
rs1197685580 3018 dbSNP
rs1263210860 3035 dbSNP
rs1474574180 3057 dbSNP
rs1043436886 3063 dbSNP
rs1029700130 3064 dbSNP
rs1260689219 3067 dbSNP
rs186405596 3085 dbSNP
rs1236254006 3088 dbSNP
rs1275553429 3095 dbSNP
rs770436796 3097 dbSNP
rs960866251 3097 dbSNP
rs1013510226 3103 dbSNP
rs1023858686 3130 dbSNP
rs969226624 3145 dbSNP
rs756970899 3148 dbSNP
rs1380248809 3154 dbSNP
rs1004263211 3161 dbSNP
rs920671890 3166 dbSNP
rs1460840953 3177 dbSNP
rs1425980995 3184 dbSNP
rs778633173 3204 dbSNP
rs1475489278 3215 dbSNP
rs963053874 3218 dbSNP
rs1190616784 3225 dbSNP
rs981020815 3239 dbSNP
rs1170321685 3246 dbSNP
rs1430043008 3248 dbSNP
rs983819475 3248 dbSNP
rs1194695895 3250 dbSNP
rs775947533 3252 dbSNP
rs1271888929 3253 dbSNP
rs363788 3253 dbSNP
rs960900979 3256 dbSNP
rs944926126 3267 dbSNP
rs992360020 3274 dbSNP
rs1358541253 3280 dbSNP
rs922211372 3284 dbSNP
rs932138732 3294 dbSNP
rs914079431 3295 dbSNP
rs945738517 3303 dbSNP
rs1368682895 3317 dbSNP
rs1333298265 3326 dbSNP
rs1043906264 3336 dbSNP
rs191093907 3337 dbSNP
rs1338229745 3343 dbSNP
rs757949677 3350 dbSNP
rs1467232622 3366 dbSNP
rs1395372378 3389 dbSNP
rs1174638591 3390 dbSNP
rs935694704 3393 dbSNP
rs1217598425 3398 dbSNP
rs751147420 3421 dbSNP
rs1052495180 3426 dbSNP
rs1251602123 3433 dbSNP
rs1340949026 3439 dbSNP
rs1283581600 3477 dbSNP
rs139446089 3483 dbSNP
rs1257088150 3484 dbSNP
rs1045304303 3486 dbSNP
rs896165203 3490 dbSNP
rs766927807 3495 dbSNP
rs1281386607 3497 dbSNP
rs1456150879 3499 dbSNP
rs1233220824 3500 dbSNP
rs1345475484 3516 dbSNP
rs1312137056 3517 dbSNP
rs899788426 3518 dbSNP
rs749950311 3519 dbSNP
rs1335139553 3523 dbSNP
rs1326273460 3529 dbSNP
rs746986078 3539 dbSNP
rs1397325834 3550 dbSNP
rs1375612649 3572 dbSNP
rs363778 3574 dbSNP
rs1311896827 3610 dbSNP
rs543978246 3613 dbSNP
rs1393685966 3614 dbSNP
rs1160707539 3615 dbSNP
rs755992176 3631 dbSNP
rs363779 3634 dbSNP
rs1013895713 3648 dbSNP
rs1179735958 3651 dbSNP
rs1486703771 3652 dbSNP
rs1050853033 3659 dbSNP
rs1258410694 3660 dbSNP
rs1210476752 3677 dbSNP
rs781195328 3684 dbSNP
rs886947516 3707 dbSNP
rs1193192763 3709 dbSNP
rs1023537218 3711 dbSNP
rs1479028141 3717 dbSNP
rs1349848447 3719 dbSNP
rs1277714365 3720 dbSNP
rs1234513278 3725 dbSNP
rs12853824 3726 dbSNP
rs779993863 3731 dbSNP
rs969329809 3751 dbSNP
rs1311851427 3756 dbSNP
rs1412519115 3777 dbSNP
rs1004232145 3783 dbSNP
rs1401711227 3786 dbSNP
rs1170904516 3801 dbSNP
rs1424615744 3814 dbSNP
rs1401211198 3815 dbSNP
rs774816297 3829 dbSNP
rs868682060 3829 dbSNP
rs1160423257 3832 dbSNP
rs1358364262 3835 dbSNP
rs10667776 3842 dbSNP
rs61283415 3842 dbSNP
rs72614325 3842 dbSNP
rs867911524 3843 dbSNP
rs199979511 3844 dbSNP
rs1399189738 3846 dbSNP
rs1303338750 3855 dbSNP
rs1016989755 3873 dbSNP
rs1230998281 3876 dbSNP
rs1363623575 3884 dbSNP
rs1270424102 3885 dbSNP
rs1431849110 3886 dbSNP
rs1332467843 3911 dbSNP
rs1326243628 3913 dbSNP
rs1319074305 3915 dbSNP
rs144988548 3916 dbSNP
rs1395935477 3917 dbSNP
rs1164286021 3919 dbSNP
rs1459950979 3922 dbSNP
rs1273721005 3925 dbSNP
rs1421828803 3927 dbSNP
rs1187358810 3928 dbSNP
rs554755615 3929 dbSNP
rs1240125073 3930 dbSNP
rs1468859506 3930 dbSNP
rs1033925960 3933 dbSNP
rs1211215266 3933 dbSNP
rs201479166 3933 dbSNP
rs183026364 3942 dbSNP
rs771251895 3942 dbSNP
rs565284068 3943 dbSNP
rs745982261 3950 dbSNP
rs1372287297 3952 dbSNP
rs1325824678 3953 dbSNP
rs1356373901 3954 dbSNP
rs1434341098 3954 dbSNP
rs376487087 3960 dbSNP
rs776108649 3961 dbSNP
rs1216389412 3964 dbSNP
rs977155858 3965 dbSNP
rs925717591 3967 dbSNP
rs200033884 3969 dbSNP
rs1175272144 3970 dbSNP
rs935678969 3972 dbSNP
rs1039812194 3976 dbSNP
rs1252227886 3985 dbSNP
rs966053651 4005 dbSNP
rs1142611 4016 dbSNP
rs363770 4017 dbSNP
rs1453526543 4020 dbSNP
rs976517760 4023 dbSNP
rs922179977 4027 dbSNP
rs374252155 4031 dbSNP
rs1197104809 4045 dbSNP
rs1236859831 4052 dbSNP
rs933872925 4057 dbSNP
rs932273612 4060 dbSNP
rs1376220284 4062 dbSNP
rs148630956 4091 dbSNP
rs1180376531 4101 dbSNP
rs1368889860 4108 dbSNP
rs1315013276 4110 dbSNP
rs1043833559 4117 dbSNP
rs1394277266 4118 dbSNP
rs925460421 4130 dbSNP
rs774652184 4131 dbSNP
rs142122399 4132 dbSNP
rs1259127486 4141 dbSNP
rs1211180433 4144 dbSNP
rs185855220 4163 dbSNP
rs1392679485 4164 dbSNP
rs1403212909 4168 dbSNP
rs1319240249 4171 dbSNP
rs759635137 4185 dbSNP
rs1052206246 4193 dbSNP
rs1223229081 4196 dbSNP
rs1322552636 4197 dbSNP
rs190899473 4212 dbSNP
rs1335816067 4215 dbSNP
rs1448369330 4233 dbSNP
rs370617352 4238 dbSNP
rs1312010641 4253 dbSNP
rs1375365275 4268 dbSNP
rs1455163336 4282 dbSNP
rs1240128521 4289 dbSNP
rs772231088 4297 dbSNP
rs1034063830 4303 dbSNP
rs772550448 4306 dbSNP
rs1013822637 4309 dbSNP
rs1458218073 4310 dbSNP
rs995432881 4313 dbSNP
rs1199037854 4320 dbSNP
rs1487058766 4327 dbSNP
rs1021240830 4338 dbSNP
rs183092630 4341 dbSNP
rs1327764592 4344 dbSNP
rs1004478295 4383 dbSNP
rs1234038556 4395 dbSNP
rs1438981902 4395 dbSNP
rs1188210440 4397 dbSNP
rs1383664028 4398 dbSNP
rs1362423134 4399 dbSNP
rs1288116436 4401 dbSNP
rs151296427 4403 dbSNP
rs1396684396 4408 dbSNP
rs753753797 4409 dbSNP
rs12853876 4460 dbSNP
rs12854201 4472 dbSNP
rs12853841 4474 dbSNP
rs1460480856 4477 dbSNP
rs1366286178 4479 dbSNP
rs966559663 4487 dbSNP
rs754966465 4504 dbSNP
rs1430614495 4509 dbSNP
rs1162216702 4515 dbSNP
rs764939334 4517 dbSNP
rs1396770587 4520 dbSNP
rs1466692852 4534 dbSNP
rs976050848 4534 dbSNP
rs761227989 4539 dbSNP
rs1275611026 4543 dbSNP
rs363759 4549 dbSNP
rs920899012 4553 dbSNP
rs754277885 4556 dbSNP
rs1229850315 4558 dbSNP
rs1308340104 4561 dbSNP
rs1342578553 4563 dbSNP
rs1243077339 4564 dbSNP
rs925429183 4573 dbSNP
rs757371849 4574 dbSNP
rs986659068 4577 dbSNP
rs1283778768 4580 dbSNP
rs908502898 4609 dbSNP
rs371914860 4614 dbSNP
rs1318903055 4615 dbSNP
rs939856720 4623 dbSNP
rs1038573685 4638 dbSNP
rs1169195720 4641 dbSNP
rs1220745244 4660 dbSNP
rs898337153 4672 dbSNP
rs1457422532 4682 dbSNP
rs1200949117 4684 dbSNP
rs1448049329 4686 dbSNP
rs363772 4690 dbSNP
rs988742274 4726 dbSNP
rs938066172 4728 dbSNP
rs917674455 4729 dbSNP
rs1055234851 4731 dbSNP
rs1258196333 4734 dbSNP
rs1440410762 4748 dbSNP
rs781506167 4765 dbSNP
rs896470377 4766 dbSNP
rs1265317323 4767 dbSNP
rs1328686268 4773 dbSNP
rs1481073255 4781 dbSNP
rs1186612895 4790 dbSNP
rs949162548 4796 dbSNP
rs1225821530 4803 dbSNP
rs756369043 4804 dbSNP
rs187639160 4815 dbSNP
rs762253969 4816 dbSNP
rs363773 4842 dbSNP
rs1329313529 4852 dbSNP
rs931195557 4853 dbSNP
rs1391523849 4873 dbSNP
rs1422275723 4875 dbSNP
rs1466119779 4877 dbSNP
rs1428164364 4891 dbSNP
rs1397246499 4894 dbSNP
rs1174697956 4902 dbSNP
rs1303872477 4909 dbSNP
rs1376489327 4913 dbSNP
rs1184012293 4917 dbSNP
rs1001118862 4926 dbSNP
rs1405024058 4927 dbSNP
rs780336155 4930 dbSNP
rs1486804846 4933 dbSNP
rs1394602475 4948 dbSNP
rs1199732100 4950 dbSNP
rs1342772539 4951 dbSNP
rs765472340 4954 dbSNP
rs1281214944 4957 dbSNP
rs1032888700 4960 dbSNP
rs1239086815 4963 dbSNP
rs749804559 4979 dbSNP
rs1142613 4981 dbSNP
rs1349358839 4986 dbSNP
rs769208686 4989 dbSNP
rs1416206366 5030 dbSNP
rs1341564884 5043 dbSNP
rs1313853364 5054 dbSNP
rs1402074635 5055 dbSNP
rs1276605136 5065 dbSNP
rs1028094715 5075 dbSNP
rs1400614500 5077 dbSNP
rs1065157 5080 dbSNP
rs1160837514 5087 dbSNP
rs1470527967 5087 dbSNP
rs955026413 5091 dbSNP
rs1411309116 5097 dbSNP
rs1317309967 5098 dbSNP
rs1234058782 5109 dbSNP
rs774517887 5115 dbSNP
rs1258557192 5116 dbSNP
rs1048325028 5121 dbSNP
rs757737219 5123 dbSNP
rs748570707 5140 dbSNP
rs887054753 5163 dbSNP
rs1205623661 5174 dbSNP
rs1328441962 5176 dbSNP
rs1265686557 5180 dbSNP
rs974032266 5184 dbSNP
rs1007861293 5186 dbSNP
rs1283241664 5200 dbSNP
rs1019904208 5215 dbSNP
rs901888203 5219 dbSNP
rs997563918 5221 dbSNP
rs1401763519 5222 dbSNP
rs1263630575 5223 dbSNP
rs1388634994 5229 dbSNP
rs1157017637 5230 dbSNP
rs1489184198 5244 dbSNP
rs1028920341 5245 dbSNP
rs771586607 5250 dbSNP
rs953395172 5251 dbSNP
rs919732172 5260 dbSNP
rs1162912052 5262 dbSNP
rs750124080 5265 dbSNP
rs757959310 5268 dbSNP
rs979424219 5268 dbSNP
rs1243601616 5275 dbSNP
rs766038865 5278 dbSNP
rs1464373238 5279 dbSNP
rs1032580673 5289 dbSNP
rs1055605789 5293 dbSNP
rs957218455 5294 dbSNP
rs918040526 5306 dbSNP
rs949362146 5328 dbSNP
rs1042371097 5333 dbSNP
rs902523101 5340 dbSNP
rs772894534 5347 dbSNP
rs1001494347 5348 dbSNP
rs751105220 5353 dbSNP
rs1054058993 5363 dbSNP
rs900647584 5368 dbSNP
rs980535761 5375 dbSNP
rs1443127492 5386 dbSNP
rs182472819 5387 dbSNP
rs926383879 5401 dbSNP
rs1361555391 5403 dbSNP
rs1403805305 5404 dbSNP
rs1421988681 5406 dbSNP
rs930953367 5408 dbSNP
rs1448647881 5415 dbSNP
rs1402253700 5417 dbSNP
rs1296504144 5421 dbSNP
rs1245593489 5427 dbSNP
rs1218832963 5439 dbSNP
rs781285252 5440 dbSNP
rs1273291760 5441 dbSNP
rs1341922408 5443 dbSNP
rs577479734 5444 dbSNP
rs1237099018 5452 dbSNP
rs1028490953 5465 dbSNP
rs1293001926 5469 dbSNP
rs748046844 5485 dbSNP
rs1434418985 5488 dbSNP
rs1356428352 5503 dbSNP
rs1308897626 5506 dbSNP
rs755966249 5515 dbSNP
rs939934617 5517 dbSNP
rs777397992 5525 dbSNP
rs1175327622 5544 dbSNP
rs1433698589 5568 dbSNP
rs1040849870 5579 dbSNP
rs955088243 5596 dbSNP
rs1007941377 5605 dbSNP
rs1470883271 5611 dbSNP
rs1233061477 5623 dbSNP
rs1203968827 5636 dbSNP
rs5967329 5644 dbSNP
rs188392485 5645 dbSNP
rs1213532930 5646 dbSNP
rs759404594 5647 dbSNP
rs1050449752 5659 dbSNP
rs1301190602 5660 dbSNP
rs1232429577 5663 dbSNP
rs1375644735 5667 dbSNP
rs974379674 5669 dbSNP
rs1286672127 5675 dbSNP
rs191757361 5676 dbSNP
rs184718592 5679 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 1730.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000324765.8 | 3UTR | UCUUAUUUUACUAUAAGCACUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
169 hsa-miR-4778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT199338 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT203028 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT260646 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT336468 SRP9 signal recognition particle 9 2 2
MIRT389212 SERTAD2 SERTA domain containing 2 2 2
MIRT441814 TENM1 teneurin transmembrane protein 1 2 2
MIRT444029 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT454171 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT469663 RABEPK Rab9 effector protein with kelch motifs 2 2
MIRT495579 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT498340 PRELID2 PRELI domain containing 2 2 2
MIRT498696 LYRM2 LYR motif containing 2 2 6
MIRT504156 OPN5 opsin 5 2 4
MIRT506321 OTUD4 OTU deubiquitinase 4 2 4
MIRT507608 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT525431 PROX2 prospero homeobox 2 2 2
MIRT526973 PAX7 paired box 7 2 2
MIRT527814 TMEM74B transmembrane protein 74B 2 2
MIRT527960 MTAP methylthioadenosine phosphorylase 2 2
MIRT528083 NOL9 nucleolar protein 9 2 2
MIRT528480 STAMBPL1 STAM binding protein like 1 2 2
MIRT528947 PNMA5 paraneoplastic Ma antigen family member 5 2 2
MIRT530687 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT531733 SLC2A9 solute carrier family 2 member 9 2 2
MIRT532445 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT533331 UNK unkempt family zinc finger 2 2
MIRT534205 SLC38A9 solute carrier family 38 member 9 2 2
MIRT534322 SHISA6 shisa family member 6 2 2
MIRT535197 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT538076 DIAPH2 diaphanous related formin 2 2 2
MIRT539250 ANKRD50 ankyrin repeat domain 50 2 2
MIRT548733 CREBRF CREB3 regulatory factor 2 2
MIRT556406 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT559576 AP1AR adaptor related protein complex 1 associated regulatory protein 2 2
MIRT567661 ERGIC2 ERGIC and golgi 2 2 2
MIRT572750 FAM204A family with sequence similarity 204 member A 2 2
MIRT609355 ZNF664 zinc finger protein 664 2 2
MIRT611194 TMEM105 transmembrane protein 105 2 2
MIRT611545 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT611690 NODAL nodal growth differentiation factor 2 2
MIRT611810 FCRL4 Fc receptor like 4 2 2
MIRT612746 MYOCD myocardin 2 2
MIRT614177 FAM53B family with sequence similarity 53 member B 2 2
MIRT614431 TAZ tafazzin 2 2
MIRT614586 SDC1 syndecan 1 2 2
MIRT615547 TNFSF15 TNF superfamily member 15 2 2
MIRT615872 BRD3 bromodomain containing 3 2 2
MIRT615970 ASCL1 achaete-scute family bHLH transcription factor 1 2 2
MIRT616024 PRRG4 proline rich and Gla domain 4 2 4
MIRT616242 NFIC nuclear factor I C 2 2
MIRT616282 HMGB1 high mobility group box 1 2 2
MIRT616674 PRR15 proline rich 15 2 2
MIRT618302 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT618657 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT618754 SLC38A5 solute carrier family 38 member 5 2 2
MIRT619505 TXLNB taxilin beta 2 2
MIRT619545 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619605 MKKS McKusick-Kaufman syndrome 2 2
MIRT619804 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619923 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT620442 SEMA3E semaphorin 3E 2 4
MIRT620730 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625345 TAPBP TAP binding protein 2 2
MIRT627510 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT632584 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636901 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT637873 UTP6 UTP6, small subunit processome component 2 2
MIRT639011 ABI2 abl interactor 2 2 2
MIRT639054 FPR1 formyl peptide receptor 1 2 2
MIRT639085 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT639589 RGS5 regulator of G protein signaling 5 2 2
MIRT639718 NPRL3 NPR3 like, GATOR1 complex subunit 2 2
MIRT639904 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640392 ZNF785 zinc finger protein 785 2 2
MIRT640786 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT641290 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641442 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT642426 STAT3 signal transducer and activator of transcription 3 2 2
MIRT642682 KRT74 keratin 74 2 2
MIRT643362 TRIM10 tripartite motif containing 10 2 2
MIRT643982 DUSP28 dual specificity phosphatase 28 2 2
MIRT644466 ZNF747 zinc finger protein 747 2 2
MIRT644561 SPOP speckle type BTB/POZ protein 2 2
MIRT645748 FAM213A family with sequence similarity 213 member A 2 2
MIRT646737 FADS1 fatty acid desaturase 1 2 2
MIRT647446 SIX6 SIX homeobox 6 2 2
MIRT648317 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT649327 POLG DNA polymerase gamma, catalytic subunit 2 2
MIRT649453 WDR70 WD repeat domain 70 2 2
MIRT650066 CCDC134 coiled-coil domain containing 134 2 2
MIRT650156 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT650317 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650429 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT651325 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651843 USP13 ubiquitin specific peptidase 13 2 2
MIRT652532 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT652816 TARDBP TAR DNA binding protein 2 2
MIRT652971 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT653466 SLC5A12 solute carrier family 5 member 12 2 4
MIRT653568 SLC35B3 solute carrier family 35 member B3 2 2
MIRT655678 NUMBL NUMB like, endocytic adaptor protein 2 2
MIRT656785 KPNA4 karyopherin subunit alpha 4 2 2
MIRT656798 KNTC1 kinetochore associated 1 2 2
MIRT656988 KDM5A lysine demethylase 5A 2 2
MIRT657292 HOXB5 homeobox B5 2 2
MIRT657497 HBEGF heparin binding EGF like growth factor 2 4
MIRT658012 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT658146 STXBP2 syntaxin binding protein 2 2 2
MIRT658259 FAXC failed axon connections homolog 2 2
MIRT659051 DGKH diacylglycerol kinase eta 2 2
MIRT659171 DCTN3 dynactin subunit 3 2 2
MIRT659936 CACHD1 cache domain containing 1 2 2
MIRT660079 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT660167 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660292 BICC1 BicC family RNA binding protein 1 2 2
MIRT660317 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT660340 BCAT1 branched chain amino acid transaminase 1 2 2
MIRT660447 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT661634 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662438 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664202 TBCA tubulin folding cofactor A 2 2
MIRT666436 SH2B3 SH2B adaptor protein 3 2 2
MIRT666666 RBM47 RNA binding motif protein 47 2 4
MIRT669253 C4orf36 chromosome 4 open reading frame 36 2 2
MIRT669502 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT693912 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700435 PURB purine rich element binding protein B 2 2
MIRT702857 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT708857 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709030 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT709609 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT709810 AR androgen receptor 2 2
MIRT709872 A1CF APOBEC1 complementation factor 2 2
MIRT710208 ENAH ENAH, actin regulator 2 2
MIRT710964 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711173 EMCN endomucin 2 2
MIRT711219 RETSAT retinol saturase 2 2
MIRT711345 FMNL2 formin like 2 2 2
MIRT711441 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT711631 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711823 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT712164 SURF4 surfeit 4 2 2
MIRT712632 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713692 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT714906 CHMP3 charged multivesicular body protein 3 2 2
MIRT715161 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT715430 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT715660 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT715968 FADS3 fatty acid desaturase 3 2 2
MIRT716203 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716234 SRSF12 serine and arginine rich splicing factor 12 2 2
MIRT716251 PALM2 paralemmin 2 2 2
MIRT716375 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT716490 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT716744 APOL6 apolipoprotein L6 2 2
MIRT717624 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT718480 TMEM151A transmembrane protein 151A 2 2
MIRT718805 PRKCB protein kinase C beta 2 2
MIRT719276 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719432 NPTX2 neuronal pentraxin 2 2 2
MIRT721011 ZNF619 zinc finger protein 619 2 2
MIRT721819 HEATR5A HEAT repeat containing 5A 2 2
MIRT721997 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT723143 METTL24 methyltransferase like 24 2 2
MIRT723213 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT723427 MC2R melanocortin 2 receptor 2 2
MIRT723436 ADI1 acireductone dioxygenase 1 2 2
MIRT723542 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT724474 MMD monocyte to macrophage differentiation associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4778-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4778-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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