pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol CABLES1   
Synonyms CABL1, CABLES, HsT2563, IK3-1
Description Cdk5 and Abl enzyme substrate 1
Transcript NM_001100619   
Other Transcripts NM_138375   
Expression
Putative miRNA Targets on CABLES1
3'UTR of CABLES1
(miRNA target sites are highlighted)
>CABLES1|NM_001100619|3'UTR
   1 CACTGGCCCCGAGGACAGCCAAGGGCCATTTCTTCTCAGCTTGGTGGAGCAGCACTTACTTACTACTGGAAATGAAAAAA
  81 AGTAGAACTCAGAATACCAGACTTTTCTTCCTCTCGACATAGTTTGGGGAGAAGCAGTACTAGAAACTTTCCAAGGAGTC
 161 TTGGGTGTGTAGCCAAGAGGAGCCATGAGCTATGGACTCCTCAAGCACGGGAAGAGGAGGTGTGTGCTGAGAACAGAGAG
 241 GCCCTGCCCTCTGTCCACTAGCGAGAATCCCTAGCTGCCCCAGCCCAGTCTTTCTCCCCGGCATTCACAAACTTTGCAAG
 321 CGTGGTCCAGGGCCTTCTCCAGATCTGTTCCAACTTGGAGTGTGAAGGGCTTGAGCATACGGGGGAAGAGAGTCTGCAGA
 401 AGTTGGGGGAAAACTTTTAAAAGATACCCTCATTGTGTCAAAGAGTGTGCCAATCTATTTTTGTATCAGCATTGGAAGTG
 481 CACTTTCCCCTGGGGCGTGTGGGTGTGTGAATGTGCAAGTGTCTGAGAGATACTGCATCAGCCCTAGACCCCCAGAGCCA
 561 GTCCCGCCCTTTACAGAGCAGCCCTTAGCCTGGGGCCATGGGTCAGGCTGACCTTCAACAATTATTTCTAGATGATTTCT
 641 GGATAAGAATTGCTCTCTCGGTACCAGACAGTTTGACATCCTCCACCCTTAGAAAATGACTGACATTGTTTTGTTACTGC
 721 TCCTACCCACCAAGGGGATAAAGAAGGCGAGTTCTGAGTGTTGGATGAGTCAGTCGCGTGGAAGGACGTGGAGCGTGGCG
 801 CTCTGTAACTTCCTGCCGTCTGCCACCCCGCCACGTGTATTTAACCCTCGCACTTTCTCCACTGTGGAGATGGCTGGGGC
 881 GGCGCCCCACAGTGTGTATTCCTGTCCTCTATGTTAGAGTGCATCAGAAGCACATTTACTGTGCTATCTATATCGCTATA
 961 TAAAAGTGTTTTATAAAAACCCAGAATAGGAGCACGACGCATGATTGGTGTTTGAGGCGTTTGCCAGCTGGGACAAACTG
1041 CGTTTGGAGCTGTGGTTAAGCTGACTAAGGAGGCGGTGGCTCTTTCTTAACATTCCCACGTGCCCAGGGCTGTTCATGCA
1121 AGATTTTAATGGTGACTTGTCCTGGCTTACTGGGACAGTCTGTATGAGGCATGTCACCACACTGTCGCCTCATAGCTGCA
1201 AGAGAGAGGCACCAGCTGAAGTTCCCCTGACTGAAGAGAGCCTGTGGCCATGTAAAAAGAGAATTAAACTCTTGTTGCTT
1281 TTTGTATACCTGTATGCGTTTGTGTAGACGTGTGTCTCACCAGTCACCTTTGCCCTGCATTGCTGATCCCCTTGCGCACA
1361 CTGATTCTAGTGAGGTCACAGATTCGGAGCTTCACACACCAGCCCAGAGAAAGGGCGATGGAACCGAACCGAGGGTCTGC
1441 AGCTTTCGTTAGCAGAGCTGTCAGATTCTTGACAGTCTTGGAGGATGGAGAAATTCAAGCAGCAGCTGGTGAGGGCCAAA
1521 ACAGAATACTTGGCTTCTTCAGAATCTTAGATTGCACTGAGTTTAGTCCTAAATATTTTGCTAACAAATTTCCTTGGCCA
1601 GAATCAGTTGTAAGACAGTGATTTGGGTGGTGGGGGGAGGGAGGAGGGAGAGGATATGATTAATGTGGTCTCTTTGGCTG
1681 ATCGAAAGCTAGATCAACTGGTACTTAGGGCACTTGCTGTTTATAAAGCAAAATTGAGAAAATATTCAAGGTGCCTCCAT
1761 CGCCTGAACTACAAAATGCCCTTGGCCTTCCTCACATGGGGTCTGTCACCTTGCATCTCTGATAAGCCATCCACCTTCCT
1841 GGTCAGTGCCTACAGGGGGAGAGCCTTTCTGAGAAGCAGGTCCTGTGGTATCTGAGAATGGTCTAGAGAGCTCCCCACTG
1921 CCCATCTGCCCCCGAATTTCCTGCCAAGCTCTGGGGAGTGGGGTGGGGGGAGGGACGTCCGATGGATGACAGGCCGCCAG
2001 CCCAGACGTGGGGAGAGAAGCCTGAGTCCTTTCCTGTGTGATAAAATCAGGCTAATTTACTTGGATTTGGGGTGATTTGT
2081 TTGGTTTTTAGCATTTATGAGGTGAGCCCATGAAGTTAGTGGTCCATTACTTTTTAAAGATGCATTTTCATTTTAAACTG
2161 TCTCCTGGCCTGTGGATTTGTGGAATGGACAGTTTTGTGGGTTTTAATTTATTTGTGAGGAGTCGGGGCTGAGAAGGCAT
2241 TTTATCAGGAGGTCTCCTTTTGCACGTCCATGACATGAGCTTTTCGGAGGCAAAGGAAGTGGAGGAGGGTGAGAGATGCA
2321 GGTCACTGCCAGAGGCACCTCTGTGACACGGAACATTCCAGACACGTCGCAGCCTTGGGCTTCGGCGAGGAGGAAGTCTG
2401 AGCCTGTGAAGCGAGAAGGCCAGGCAGTAGACTGGCTCTGAGGTTTTGCCCTTTGACCTCCTCCACAGAGGGCAGCTTCA
2481 GCCCCTTGTAAGCCCTGCCCCCTCTCAGGACTGCCCTGAGGCCTCTCCAGTCCTCCCCACACTCAGAGATCTGTGGGGAA
2561 GCTCCGCCCAGCCACACTCCTTGGGATAATACTAGCCGGTTCTGCCTGATTCCTTTTCCCCCGGAGCCAGCCTAGGGGGC
2641 CCGGGACTCCTCTAGTGAGCCTTGACTGTTAGGTAAGAGACAGGAAGCAGACAAGCCAAGAGGTTGCTGCAGCTGCCCCC
2721 AGGAGGAAACGGGCAGCAGGGAGTGTGGCCCAGCCCCCACTGTACCCCTCCAGGGGCCCGAGCCCTTGCCAGCCCAATGA
2801 CACCTTGAAGTCACCACTTTTCCTTTCTTGCCCGCTAATAAAACCTATTTAAACAGGAAATTCATACCAAATGCAAATGG
2881 GTTTTGTTTTCCTTGGCATTTTGTTGTTCCGATCACAGATTTCCCTGCCAGGGTGTCTGTGGTTATCAGCTGCAGGCTCA
2961 GCTTGGGGCGGCCGCTTCACACAAGCCACTCTGTACCACGTGCCCTACCTTAGTGACGGGAGTAAGGAGCTTCCTTCCCC
3041 TCCATGTCATTCCTTCCTGTTCCCTTCATTCCCCAACAGCAAATAAAACTGTTGAATGCTCTGAAAAAAAAAAAAAAAAA
3121 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacguUUUCAUU-AAC--ACCAAAAa 5'
                 :::||:| |||  ||||||| 
Target 5' tggatttGGGGTGATTTGTTTGGTTTTt 3'
2062 - 2089 156.00 -13.30
2
miRNA  3' accACGUUUUCAUUAACACCAAAAa 5'
             ||| |::||:  ||||||| | 
Target 5' cccTGCCAGGGTGTCTGTGGTTATc 3'
2923 - 2947 142.00 -15.22
3
miRNA  3' accACGUUUUCAUUAACACCAAAAa 5'
             |||||| | ::|| | ||||| 
Target 5' aaaTGCAAATG-GGTT-TTGTTTTc 3'
2869 - 2891 136.00 -6.94
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30466086 10 COSMIC
COSN30469079 11 COSMIC
COSN1082091 29 COSMIC
COSN30145899 33 COSMIC
COSN30494818 97 COSMIC
COSN22153750 303 COSMIC
COSN31607784 788 COSMIC
COSN26585058 823 COSMIC
COSN26636538 851 COSMIC
COSN31590253 884 COSMIC
COSN31569378 895 COSMIC
COSN6663781 956 COSMIC
COSN31556124 964 COSMIC
COSN17949133 1067 COSMIC
COSN26205145 1355 COSMIC
COSN17443631 1632 COSMIC
COSN1733085 1948 COSMIC
COSN27143892 2385 COSMIC
COSN20114780 2623 COSMIC
COSN7461291 2806 COSMIC
COSN21925889 3027 COSMIC
COSN9676670 3039 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746378598 4 dbSNP
rs993466100 11 dbSNP
rs774731979 12 dbSNP
rs954428988 14 dbSNP
rs762277826 16 dbSNP
rs768039820 17 dbSNP
rs1177450246 19 dbSNP
rs199725892 20 dbSNP
rs988731441 25 dbSNP
rs750557685 26 dbSNP
rs756196934 27 dbSNP
rs766375783 33 dbSNP
rs1267218152 35 dbSNP
rs915459047 36 dbSNP
rs200668681 38 dbSNP
rs1408025984 39 dbSNP
rs755143948 41 dbSNP
rs1182870571 43 dbSNP
rs946961076 44 dbSNP
rs1050412500 47 dbSNP
rs910198427 49 dbSNP
rs192381876 51 dbSNP
rs1267038906 54 dbSNP
rs978475272 54 dbSNP
rs1345013466 58 dbSNP
rs1325351495 75 dbSNP
rs745945858 75 dbSNP
rs1281211349 77 dbSNP
rs1218574499 81 dbSNP
rs1221889746 83 dbSNP
rs749284907 86 dbSNP
rs183936713 87 dbSNP
rs1290687298 89 dbSNP
rs565795548 116 dbSNP
rs897919328 117 dbSNP
rs993322057 120 dbSNP
rs1176239496 122 dbSNP
rs1048888092 125 dbSNP
rs1238074207 130 dbSNP
rs1185305414 151 dbSNP
rs887687090 155 dbSNP
rs866666853 166 dbSNP
rs888412406 167 dbSNP
rs1203895103 168 dbSNP
rs1462430147 172 dbSNP
rs1005625236 185 dbSNP
rs545983900 193 dbSNP
rs1037073774 196 dbSNP
rs1217294385 200 dbSNP
rs1267527136 202 dbSNP
rs1022567679 205 dbSNP
rs897684913 207 dbSNP
rs993722246 209 dbSNP
rs1454776423 210 dbSNP
rs571451521 220 dbSNP
rs1201125251 221 dbSNP
rs954808151 222 dbSNP
rs1267616451 225 dbSNP
rs1002963762 226 dbSNP
rs1017290388 228 dbSNP
rs527516414 236 dbSNP
rs1428507278 237 dbSNP
rs547255499 238 dbSNP
rs567234377 261 dbSNP
rs955987339 263 dbSNP
rs988294853 264 dbSNP
rs1199555394 276 dbSNP
rs1031409098 278 dbSNP
rs915449147 279 dbSNP
rs1252868789 284 dbSNP
rs968289136 285 dbSNP
rs956222704 290 dbSNP
rs1341450702 295 dbSNP
rs986404716 300 dbSNP
rs539574035 301 dbSNP
rs1380698799 309 dbSNP
rs944696006 322 dbSNP
rs1040798105 323 dbSNP
rs558360045 334 dbSNP
rs1392200182 342 dbSNP
rs1403258708 348 dbSNP
rs199534173 370 dbSNP
rs1295443181 371 dbSNP
rs948994631 381 dbSNP
rs774174143 382 dbSNP
rs909923496 386 dbSNP
rs1048878214 387 dbSNP
rs1425963600 387 dbSNP
rs868784144 388 dbSNP
rs1382859071 390 dbSNP
rs1355645005 412 dbSNP
rs1240762849 420 dbSNP
rs1419363267 423 dbSNP
rs887634920 425 dbSNP
rs1175305784 430 dbSNP
rs766512540 440 dbSNP
rs948624333 441 dbSNP
rs1269447877 442 dbSNP
rs759673289 444 dbSNP
rs1037104935 452 dbSNP
rs188782924 452 dbSNP
rs76013029 454 dbSNP
rs1240027356 457 dbSNP
rs569236940 470 dbSNP
rs1305282814 472 dbSNP
rs1409548593 472 dbSNP
rs1246876704 479 dbSNP
rs1346575707 494 dbSNP
rs142702387 496 dbSNP
rs1007925361 497 dbSNP
rs890263460 497 dbSNP
rs1175161152 502 dbSNP
rs868696918 504 dbSNP
rs1365230161 524 dbSNP
rs1031763716 525 dbSNP
rs761336052 528 dbSNP
rs397897439 532 dbSNP
rs45579232 532 dbSNP
rs557988679 538 dbSNP
rs1269334602 539 dbSNP
rs1011782348 543 dbSNP
rs1385169086 549 dbSNP
rs1489859644 550 dbSNP
rs1022455880 552 dbSNP
rs1422763560 559 dbSNP
rs1266724172 560 dbSNP
rs1031314249 564 dbSNP
rs1350649303 566 dbSNP
rs544116802 567 dbSNP
rs1024928220 575 dbSNP
rs1285648716 579 dbSNP
rs1222218092 591 dbSNP
rs986311770 599 dbSNP
rs1382246705 628 dbSNP
rs1386532110 629 dbSNP
rs980343114 631 dbSNP
rs540836714 633 dbSNP
rs1429736088 635 dbSNP
rs1378826345 636 dbSNP
rs750361064 644 dbSNP
rs1376953422 648 dbSNP
rs1447246652 655 dbSNP
rs1017847009 656 dbSNP
rs1314220877 660 dbSNP
rs193025588 661 dbSNP
rs1208332584 665 dbSNP
rs766166145 665 dbSNP
rs574434406 670 dbSNP
rs934080189 671 dbSNP
rs1271242864 672 dbSNP
rs542637163 672 dbSNP
rs1230262757 675 dbSNP
rs1327613257 676 dbSNP
rs929388576 681 dbSNP
rs943199296 685 dbSNP
rs1406428589 686 dbSNP
rs984869479 689 dbSNP
rs1289932045 697 dbSNP
rs1306465250 700 dbSNP
rs750165744 706 dbSNP
rs78479391 706 dbSNP
rs1188049366 732 dbSNP
rs1388395468 732 dbSNP
rs948531384 737 dbSNP
rs371434482 739 dbSNP
rs758843090 749 dbSNP
rs907086024 750 dbSNP
rs1442135346 759 dbSNP
rs1459321272 760 dbSNP
rs1274161317 761 dbSNP
rs1199680751 763 dbSNP
rs1243024431 766 dbSNP
rs1484771399 766 dbSNP
rs545060551 776 dbSNP
rs1031348708 777 dbSNP
rs1226967752 778 dbSNP
rs150971968 779 dbSNP
rs1316634290 780 dbSNP
rs1014459564 788 dbSNP
rs527441460 789 dbSNP
rs547194098 794 dbSNP
rs140829158 795 dbSNP
rs1167906045 796 dbSNP
rs184684421 800 dbSNP
rs891482111 801 dbSNP
rs1387164931 803 dbSNP
rs1161616507 806 dbSNP
rs1472623319 813 dbSNP
rs1233785678 814 dbSNP
rs1184489736 819 dbSNP
rs1011318314 829 dbSNP
rs1021355815 830 dbSNP
rs573902033 831 dbSNP
rs558289693 832 dbSNP
rs1007693782 838 dbSNP
rs1291476055 839 dbSNP
rs1465900639 848 dbSNP
rs1018222751 850 dbSNP
rs541439886 851 dbSNP
rs367818277 862 dbSNP
rs1444047000 864 dbSNP
rs1450101774 865 dbSNP
rs1348434336 869 dbSNP
rs976763359 869 dbSNP
rs757307294 872 dbSNP
rs1367513711 879 dbSNP
rs950746255 881 dbSNP
rs962936864 882 dbSNP
rs781191704 884 dbSNP
rs984772621 885 dbSNP
rs1471778874 888 dbSNP
rs1411706418 889 dbSNP
rs909259564 892 dbSNP
rs1491003433 897 dbSNP
rs1199625193 905 dbSNP
rs1262880870 910 dbSNP
rs1218803071 912 dbSNP
rs1441101874 912 dbSNP
rs948813252 918 dbSNP
rs1284470849 920 dbSNP
rs1229858257 924 dbSNP
rs372069474 933 dbSNP
rs188652950 935 dbSNP
rs191862855 942 dbSNP
rs987314862 944 dbSNP
rs1191622702 946 dbSNP
rs1053477491 947 dbSNP
rs1425999885 951 dbSNP
rs911297166 955 dbSNP
rs10210 956 dbSNP
rs947013252 960 dbSNP
rs1176039336 964 dbSNP
rs1422786343 967 dbSNP
rs1042748037 969 dbSNP
rs1191526626 974 dbSNP
rs1334663335 977 dbSNP
rs1177654760 993 dbSNP
rs1344550617 996 dbSNP
rs776160059 999 dbSNP
rs1038905718 1000 dbSNP
rs571651979 1001 dbSNP
rs184242310 1003 dbSNP
rs749626608 1005 dbSNP
rs1006682842 1007 dbSNP
rs1299537609 1010 dbSNP
rs1340644470 1011 dbSNP
rs1204011576 1016 dbSNP
rs1313772176 1017 dbSNP
rs534388255 1020 dbSNP
rs1281051998 1028 dbSNP
rs762734136 1032 dbSNP
rs189354985 1033 dbSNP
rs769144502 1037 dbSNP
rs1362736208 1042 dbSNP
rs11708 1043 dbSNP
rs1433132377 1052 dbSNP
rs1026956597 1056 dbSNP
rs1364797617 1057 dbSNP
rs1221306066 1061 dbSNP
rs1053021927 1068 dbSNP
rs563938288 1070 dbSNP
rs1357789595 1072 dbSNP
rs891478899 1076 dbSNP
rs1175907020 1081 dbSNP
rs751443167 1081 dbSNP
rs1419600834 1096 dbSNP
rs950968823 1100 dbSNP
rs1316873484 1104 dbSNP
rs1006142132 1106 dbSNP
rs1265399525 1109 dbSNP
rs1016251360 1111 dbSNP
rs180879202 1117 dbSNP
rs980619018 1118 dbSNP
rs1245207756 1120 dbSNP
rs1484080979 1122 dbSNP
rs767047772 1129 dbSNP
rs1254088618 1133 dbSNP
rs1478854897 1139 dbSNP
rs1045266 1141 dbSNP
rs1209331495 1142 dbSNP
rs928477131 1143 dbSNP
rs960114222 1155 dbSNP
rs150151830 1156 dbSNP
rs536977007 1157 dbSNP
rs1407113880 1162 dbSNP
rs1417758850 1165 dbSNP
rs1226209644 1167 dbSNP
rs1364584465 1174 dbSNP
rs913102029 1179 dbSNP
rs1315915457 1182 dbSNP
rs1398017677 1183 dbSNP
rs947296230 1187 dbSNP
rs766901333 1188 dbSNP
rs1443518922 1190 dbSNP
rs1042741333 1200 dbSNP
rs536460919 1201 dbSNP
rs910913143 1205 dbSNP
rs1403799977 1209 dbSNP
rs1389030747 1217 dbSNP
rs942412677 1222 dbSNP
rs1332482478 1225 dbSNP
rs1439001942 1226 dbSNP
rs1425256545 1227 dbSNP
rs1275776992 1234 dbSNP
rs1181117799 1240 dbSNP
rs1480850110 1244 dbSNP
rs1041163487 1251 dbSNP
rs1202940066 1258 dbSNP
rs772638010 1273 dbSNP
rs749921681 1276 dbSNP
rs1292668403 1279 dbSNP
rs1247250303 1283 dbSNP
rs998051393 1284 dbSNP
rs1047896994 1286 dbSNP
rs1288866196 1287 dbSNP
rs879425299 1287 dbSNP
rs1312425785 1290 dbSNP
rs986833642 1293 dbSNP
rs1352722229 1295 dbSNP
rs760637887 1295 dbSNP
rs911190423 1297 dbSNP
rs1016202279 1298 dbSNP
rs556604463 1299 dbSNP
rs1459103124 1310 dbSNP
rs1366300949 1311 dbSNP
rs1001558907 1313 dbSNP
rs867007587 1321 dbSNP
rs1419380948 1327 dbSNP
rs867786223 1328 dbSNP
rs1179908609 1329 dbSNP
rs1482724053 1335 dbSNP
rs1269655146 1338 dbSNP
rs766178323 1340 dbSNP
rs1437661496 1348 dbSNP
rs1265018767 1349 dbSNP
rs575958773 1350 dbSNP
rs989017382 1354 dbSNP
rs1331651222 1355 dbSNP
rs1380855014 1356 dbSNP
rs935801785 1357 dbSNP
rs1160981651 1376 dbSNP
rs1387953996 1378 dbSNP
rs1292521028 1381 dbSNP
rs1392305289 1387 dbSNP
rs1390556370 1393 dbSNP
rs913158162 1397 dbSNP
rs755776370 1398 dbSNP
rs1376623262 1399 dbSNP
rs1431455006 1403 dbSNP
rs1266840635 1408 dbSNP
rs1445032393 1408 dbSNP
rs1045403248 1415 dbSNP
rs1466453266 1418 dbSNP
rs1312026639 1421 dbSNP
rs968603613 1425 dbSNP
rs1245291691 1426 dbSNP
rs1038084366 1427 dbSNP
rs1258214143 1431 dbSNP
rs898693704 1432 dbSNP
rs1231724229 1447 dbSNP
rs1282471825 1448 dbSNP
rs994283191 1449 dbSNP
rs753804679 1455 dbSNP
rs1026204123 1458 dbSNP
rs759261804 1461 dbSNP
rs1318148548 1467 dbSNP
rs1456470780 1470 dbSNP
rs1402663222 1474 dbSNP
rs891396868 1474 dbSNP
rs1464544496 1475 dbSNP
rs1210652377 1484 dbSNP
rs911155010 1486 dbSNP
rs1008857795 1489 dbSNP
rs1189351090 1498 dbSNP
rs1451435031 1499 dbSNP
rs942319443 1500 dbSNP
rs1246383952 1509 dbSNP
rs765031357 1510 dbSNP
rs1188174247 1513 dbSNP
rs976445041 1518 dbSNP
rs1281237466 1519 dbSNP
rs1443295717 1519 dbSNP
rs879586445 1521 dbSNP
rs369621703 1528 dbSNP
rs964035699 1535 dbSNP
rs1254878005 1548 dbSNP
rs979535824 1554 dbSNP
rs751770370 1558 dbSNP
rs1032414937 1559 dbSNP
rs1433984199 1559 dbSNP
rs1048357555 1560 dbSNP
rs1335984264 1565 dbSNP
rs1394194284 1567 dbSNP
rs956744881 1570 dbSNP
rs988677781 1571 dbSNP
rs913015801 1575 dbSNP
rs1388412473 1576 dbSNP
rs950003328 1601 dbSNP
rs1473286776 1608 dbSNP
rs564949138 1611 dbSNP
rs78126566 1612 dbSNP
rs1442224603 1613 dbSNP
rs1253109781 1616 dbSNP
rs1207923919 1625 dbSNP
rs1238668290 1628 dbSNP
rs1271947080 1629 dbSNP
rs1227176120 1630 dbSNP
rs3833734 1631 dbSNP
rs1242289765 1632 dbSNP
rs201519989 1632 dbSNP
rs927003201 1633 dbSNP
rs1368782218 1636 dbSNP
rs1472878712 1639 dbSNP
rs1406149151 1641 dbSNP
rs1416162855 1649 dbSNP
rs1166890776 1650 dbSNP
rs756896957 1665 dbSNP
rs568347416 1670 dbSNP
rs1184968501 1671 dbSNP
rs1373232740 1675 dbSNP
rs1333829021 1676 dbSNP
rs528849453 1678 dbSNP
rs754256813 1684 dbSNP
rs187226901 1685 dbSNP
rs1333868655 1690 dbSNP
rs755335203 1693 dbSNP
rs1288820528 1705 dbSNP
rs1395937805 1707 dbSNP
rs1230116347 1712 dbSNP
rs1348606401 1715 dbSNP
rs1287673744 1723 dbSNP
rs906146751 1733 dbSNP
rs138714913 1738 dbSNP
rs1342270656 1744 dbSNP
rs891279865 1750 dbSNP
rs1405061021 1752 dbSNP
rs550011432 1762 dbSNP
rs1161888747 1763 dbSNP
rs1471828071 1772 dbSNP
rs141254844 1773 dbSNP
rs1411828011 1774 dbSNP
rs1192292488 1775 dbSNP
rs1018923462 1788 dbSNP
rs1220734807 1791 dbSNP
rs899861891 1794 dbSNP
rs1196297615 1796 dbSNP
rs1000879110 1797 dbSNP
rs1268498362 1805 dbSNP
rs895882213 1806 dbSNP
rs1326852390 1808 dbSNP
rs1010343293 1824 dbSNP
rs1032318412 1832 dbSNP
rs1020115374 1836 dbSNP
rs531683071 1837 dbSNP
rs968509116 1851 dbSNP
rs1460750512 1853 dbSNP
rs978607795 1856 dbSNP
rs956777431 1857 dbSNP
rs1366143267 1858 dbSNP
rs781305553 1859 dbSNP
rs1258187930 1862 dbSNP
rs1018164740 1864 dbSNP
rs780877286 1865 dbSNP
rs1177411188 1874 dbSNP
rs1416714650 1880 dbSNP
rs964001908 1892 dbSNP
rs1191876619 1906 dbSNP
rs971636542 1909 dbSNP
rs1170344678 1912 dbSNP
rs1453287611 1913 dbSNP
rs750418632 1914 dbSNP
rs551529474 1929 dbSNP
rs922331421 1930 dbSNP
rs929698349 1932 dbSNP
rs562060299 1934 dbSNP
rs937230563 1935 dbSNP
rs973729079 1943 dbSNP
rs571707539 1945 dbSNP
rs982525235 1947 dbSNP
rs1424773965 1956 dbSNP
rs534325958 1960 dbSNP
rs1342974040 1961 dbSNP
rs1301539392 1962 dbSNP
rs919554464 1962 dbSNP
rs547991604 1966 dbSNP
rs1047248861 1967 dbSNP
rs891316685 1968 dbSNP
rs944190073 1971 dbSNP
rs1297620323 1977 dbSNP
rs1390267868 1977 dbSNP
rs942179846 1978 dbSNP
rs1447354011 1981 dbSNP
rs1039865930 1982 dbSNP
rs900101739 1992 dbSNP
rs1001076134 1994 dbSNP
rs567835313 1996 dbSNP
rs756244899 1997 dbSNP
rs937645031 1999 dbSNP
rs573101109 2001 dbSNP
rs1230810972 2002 dbSNP
rs779583226 2007 dbSNP
rs536856068 2008 dbSNP
rs547353018 2009 dbSNP
rs1020355507 2010 dbSNP
rs749823224 2016 dbSNP
rs1377438708 2018 dbSNP
rs999995977 2024 dbSNP
rs1411035804 2025 dbSNP
rs1018154698 2029 dbSNP
rs772600196 2034 dbSNP
rs1460047081 2043 dbSNP
rs958618509 2049 dbSNP
rs1165045099 2059 dbSNP
rs1425280190 2073 dbSNP
rs964302521 2079 dbSNP
rs976719668 2081 dbSNP
rs1267744392 2107 dbSNP
rs919631624 2111 dbSNP
rs1472901865 2118 dbSNP
rs576669488 2121 dbSNP
rs1432913027 2123 dbSNP
rs538627160 2125 dbSNP
rs1480364926 2128 dbSNP
rs1029730670 2132 dbSNP
rs1266188460 2144 dbSNP
rs982580603 2145 dbSNP
rs912313867 2157 dbSNP
rs951052554 2159 dbSNP
rs1293131942 2161 dbSNP
rs943777196 2170 dbSNP
rs1352818040 2174 dbSNP
rs1287039121 2177 dbSNP
rs1389110157 2188 dbSNP
rs777765068 2191 dbSNP
rs1395162399 2193 dbSNP
rs1293742646 2196 dbSNP
rs1039896667 2197 dbSNP
rs1379771081 2198 dbSNP
rs1466984168 2200 dbSNP
rs982431909 2201 dbSNP
rs1457591342 2203 dbSNP
rs1414037284 2208 dbSNP
rs1158633739 2212 dbSNP
rs921397523 2216 dbSNP
rs1268215628 2217 dbSNP
rs1193131188 2218 dbSNP
rs747099251 2220 dbSNP
rs936939667 2225 dbSNP
rs558301993 2226 dbSNP
rs146922987 2231 dbSNP
rs1209709550 2237 dbSNP
rs1297479863 2238 dbSNP
rs1384826368 2247 dbSNP
rs1331666040 2253 dbSNP
rs539534848 2262 dbSNP
rs560662861 2264 dbSNP
rs927525952 2266 dbSNP
rs45512698 2267 dbSNP
rs1057354790 2271 dbSNP
rs1355147078 2278 dbSNP
rs1324836146 2286 dbSNP
rs917506287 2289 dbSNP
rs946027610 2291 dbSNP
rs1041748288 2292 dbSNP
rs1435454889 2294 dbSNP
rs113433428 2299 dbSNP
rs45447497 2299 dbSNP
rs1156728954 2300 dbSNP
rs1034155584 2301 dbSNP
rs892430 2302 dbSNP
rs1487281338 2306 dbSNP
rs995405873 2309 dbSNP
rs1252539766 2310 dbSNP
rs1189472009 2311 dbSNP
rs1000320998 2313 dbSNP
rs1026845596 2317 dbSNP
rs774308426 2318 dbSNP
rs1205031361 2325 dbSNP
rs1346390222 2335 dbSNP
rs951299875 2337 dbSNP
rs1434184444 2344 dbSNP
rs1234729013 2350 dbSNP
rs982873739 2350 dbSNP
rs1236642674 2351 dbSNP
rs74757787 2351 dbSNP
rs532342964 2355 dbSNP
rs374636003 2356 dbSNP
rs558213593 2356 dbSNP
rs1159361369 2359 dbSNP
rs551737899 2360 dbSNP
rs1402777346 2361 dbSNP
rs1349414614 2364 dbSNP
rs1456565475 2366 dbSNP
rs998440739 2367 dbSNP
rs1029558402 2369 dbSNP
rs1169465867 2369 dbSNP
rs1445783296 2370 dbSNP
rs951377820 2372 dbSNP
rs1306922080 2373 dbSNP
rs1379058093 2375 dbSNP
rs565308159 2377 dbSNP
rs1258789289 2378 dbSNP
rs760064404 2381 dbSNP
rs1016591863 2384 dbSNP
rs914155076 2385 dbSNP
rs1279071310 2386 dbSNP
rs945625921 2387 dbSNP
rs962436241 2388 dbSNP
rs1226336061 2391 dbSNP
rs770435043 2391 dbSNP
rs1340862455 2398 dbSNP
rs1314755395 2399 dbSNP
rs980514835 2404 dbSNP
rs776494793 2409 dbSNP
rs926377011 2413 dbSNP
rs190552087 2414 dbSNP
rs1394558433 2416 dbSNP
rs547876976 2427 dbSNP
rs1236844075 2440 dbSNP
rs1370616817 2443 dbSNP
rs1186418208 2451 dbSNP
rs575220588 2457 dbSNP
rs765014921 2464 dbSNP
rs894341352 2464 dbSNP
rs995312554 2476 dbSNP
rs917470995 2484 dbSNP
rs1270378214 2490 dbSNP
rs1413153166 2493 dbSNP
rs567773456 2499 dbSNP
rs149629583 2503 dbSNP
rs887025700 2507 dbSNP
rs1004097127 2517 dbSNP
rs1464869522 2517 dbSNP
rs1041737054 2522 dbSNP
rs965069577 2523 dbSNP
rs925965611 2524 dbSNP
rs1334069114 2526 dbSNP
rs936057296 2533 dbSNP
rs1393286630 2542 dbSNP
rs1163285933 2545 dbSNP
rs1302199179 2554 dbSNP
rs560465323 2556 dbSNP
rs1413288750 2557 dbSNP
rs1039762884 2560 dbSNP
rs1376340255 2564 dbSNP
rs989668426 2566 dbSNP
rs752479156 2567 dbSNP
rs1230745821 2568 dbSNP
rs376486504 2577 dbSNP
rs1180610242 2579 dbSNP
rs997990070 2582 dbSNP
rs1216445109 2588 dbSNP
rs530274143 2589 dbSNP
rs1256505382 2598 dbSNP
rs181550434 2599 dbSNP
rs1225449408 2610 dbSNP
rs1205753476 2611 dbSNP
rs887025168 2613 dbSNP
rs1237475602 2614 dbSNP
rs371111119 2615 dbSNP
rs1333001020 2618 dbSNP
rs397736724 2618 dbSNP
rs398079297 2618 dbSNP
rs5823380 2618 dbSNP
rs1440556178 2621 dbSNP
rs1004126921 2623 dbSNP
rs1399508671 2623 dbSNP
rs1183716892 2624 dbSNP
rs1157435022 2627 dbSNP
rs1418710372 2631 dbSNP
rs1478090075 2635 dbSNP
rs116592866 2636 dbSNP
rs1191373492 2637 dbSNP
rs962324099 2639 dbSNP
rs1001842161 2641 dbSNP
rs1425421443 2643 dbSNP
rs1466010978 2644 dbSNP
rs899273678 2652 dbSNP
rs930690413 2660 dbSNP
rs1219845670 2661 dbSNP
rs1033394051 2662 dbSNP
rs1004574928 2667 dbSNP
rs552929176 2667 dbSNP
rs1323026958 2691 dbSNP
rs1449544086 2692 dbSNP
rs538989943 2698 dbSNP
rs1429092630 2701 dbSNP
rs1302877202 2704 dbSNP
rs1339301775 2711 dbSNP
rs1397684909 2716 dbSNP
rs1414488685 2716 dbSNP
rs960742334 2718 dbSNP
rs993003664 2720 dbSNP
rs1320438518 2726 dbSNP
rs78437048 2727 dbSNP
rs967604314 2731 dbSNP
rs977697020 2732 dbSNP
rs926206834 2744 dbSNP
rs935964342 2753 dbSNP
rs957779412 2758 dbSNP
rs975822510 2760 dbSNP
rs921323793 2761 dbSNP
rs1210414998 2777 dbSNP
rs1021577610 2778 dbSNP
rs565299064 2780 dbSNP
rs534326965 2781 dbSNP
rs1285284830 2790 dbSNP
rs1417231632 2795 dbSNP
rs554196344 2798 dbSNP
rs574238795 2802 dbSNP
rs756086560 2804 dbSNP
rs1433583814 2817 dbSNP
rs1370745651 2821 dbSNP
rs1050947247 2823 dbSNP
rs990780897 2829 dbSNP
rs1418611215 2830 dbSNP
rs886967457 2834 dbSNP
rs1416051394 2835 dbSNP
rs561249481 2840 dbSNP
rs939929166 2851 dbSNP
rs1483427245 2860 dbSNP
rs1253238019 2870 dbSNP
rs1202769946 2879 dbSNP
rs1359268134 2880 dbSNP
rs1038225790 2882 dbSNP
rs1291082263 2887 dbSNP
rs34783713 2891 dbSNP
rs374205233 2893 dbSNP
rs1235654681 2896 dbSNP
rs45502301 2910 dbSNP
rs543592242 2911 dbSNP
rs1041249081 2912 dbSNP
rs901109176 2932 dbSNP
rs1353687169 2933 dbSNP
rs1165318766 2939 dbSNP
rs1462850362 2967 dbSNP
rs996727016 2971 dbSNP
rs577663623 2972 dbSNP
rs896233987 2974 dbSNP
rs1013776090 2975 dbSNP
rs1017132241 2983 dbSNP
rs1290632129 2987 dbSNP
rs1247531463 2988 dbSNP
rs1333152231 2989 dbSNP
rs1020685392 2993 dbSNP
rs1229609044 2995 dbSNP
rs966832179 3000 dbSNP
rs1024463280 3001 dbSNP
rs1035109271 3004 dbSNP
rs1326178158 3008 dbSNP
rs959620515 3018 dbSNP
rs1164127744 3019 dbSNP
rs1353063141 3019 dbSNP
rs1365581062 3025 dbSNP
rs879120494 3035 dbSNP
rs967509930 3039 dbSNP
rs1156946751 3040 dbSNP
rs1418607980 3046 dbSNP
rs1195747729 3047 dbSNP
rs977606774 3063 dbSNP
rs991024491 3064 dbSNP
rs1209884799 3069 dbSNP
rs1447758351 3077 dbSNP
rs1221139532 3080 dbSNP
rs577047078 3082 dbSNP
rs758257145 3083 dbSNP
rs1303677999 3090 dbSNP
rs957617037 3091 dbSNP
rs975431266 3095 dbSNP
rs952061061 3103 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 91768.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguUUUCAUU-AAC--ACCAAAAa 5'
                 :::||:| |||  ||||||| 
Target 5' -----uuGGGGUGAUUUGUUUGGUUUUu 3'
1 - 23
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177611. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_1 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguUUUCAUU-AAC--ACCAAaaa 5'
                 :::||:| |||  |||||   
Target 5' -------GGGGUGAUUUGUUUGGUU--- 3'
1 - 18
Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A PAR-CLIP data was present in SRX1760641. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000256925.7 | 3UTR | UUGGGGUGAUUUGUUUGGUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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