pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ATXN7L1   
Synonyms ATXN7L4
Description ataxin 7 like 1
Transcript NM_020725   
Other Transcripts NM_138495 , NM_152749   
Expression
Putative miRNA Targets on ATXN7L1
3'UTR of ATXN7L1
(miRNA target sites are highlighted)
>ATXN7L1|NM_020725|3'UTR
   1 CAAGACTATGAAGCCACTTCCACATCAATTCCAGGCCACCTAATCCCATCCGAGGAGGCCATGGGGAGGAGGAGGGAGGG
  81 GAGTGGGCTGGGGGGAGAGTCTGTTTTCTGTGCACTCCCTGTGACTCTGGCCTTTCTTCTTCTTTTTTTAATTGACCAAT
 161 TTTTAGTTAAAAAGGCAAAAGAAGGTGAATTTGAGATTTACAGAAAACAGTTCCAGTGTTTGGTTTCCGCTGTCTTTCCT
 241 TTCATTTGCCATGTTTTTACATTCTTCCAAATTTGGGGTCACTCCCCTAGCTCCTGATGCTGCTACTGTACCATCCTTTT
 321 GCTCCAGCCATGAGAGCAGACATTGCAGAATGTTGGTTCCAGGTTGGCATGCTCTGAAGCTCTTGAACTGTAGCACAGGC
 401 AGAGCCCTTTTTCTTCCTGTCATCTCCACCCGATTCCTTCCATCCCTACGTCTACCACTCTCTGGGTCCTCACTGGTCTT
 481 CAAAGGACCTGGCTCTCATAGGATCCCCTCAGGATTGTGTGCAGGGAGAGGGGGCTTTGCTGGGGAGGAGCTGGGAGTGG
 561 AGAGTTGGAGGGTGGGTGGGGTTCCCTCATCCAGTTTCCACAGCCCACCATGGCTGGAGCCAAATGCTAGAAGCGAGATT
 641 GAGAACAGTGGCCGTTTAGTGATGTGGTTTACCTAATACCACTGTCCAGCTGTGCAGCTCAGAAAGGATAAACCAGTCAG
 721 GGACAGGGGCCAGAACAGGTTTGGGAAGGTGGCAGCAAGCAGAGCATGGTGGGTAGGAGATGATCCCTAAAAAAACTGGA
 801 GACTGTGGTGGTCTGAGCTGGTCAGGAATCTGCAGAATCCCTTCCAGGAATCAGTGTGCCAGTGCCCACAGCAGGGTGAG
 881 CTAGGAGGGAGAAATCCCAGGAAAAAGGTCGTGAGAACCCAGAAAGCCACTCCATGAGGAGGCACGGTGACCACAGCTGC
 961 TAAAGGTTCTTAGGCTGCCTTCCTGGGCTAGGAAGAGCCCCCCAGGGAGAGCTTCCACAAAAGGGTATGTGTCAAACCTT
1041 TTGTCAGAATAAATAATAGCATTTCCCACCCACCCCCATGCCCTGGGCCACAGGGACTTGGTGGGATCAGCACACCCATG
1121 GATCAGCTTTTGCTGTCTTAGAGACAGCCATCCCCATGAAGGAATGGTAAGGACAGCCACTGCTCAGTGAAGAACAGCCA
1201 TTTGGAAGAGCCACGCTGGAGCCCTGCAGCCATAGAACTATTCACACTGGAGTTTTAAAAGAAACAGCAATACCATAAGC
1281 TCTAGTAGGGAATCATAATCAGGAAAGGAATTCACAACATAAAATAGGTGTTCTGTGCTATTAATCATGTAACTTTGTAT
1361 ATGATGTATAGCAAAGATACTGGGAGGTTTTGTTTCATCCTTAAATCAGAAATGAATGCTAGTTTCATAGCTGGGCAGAA
1441 CCCTCATCCCCACCCCAAAGTTTTCCTTTTCTTTCCCGTTCCCCCAACCCAAAGATCAGACTACTGTTAAGTTTCACCAC
1521 ACAATTGGAATTGCAAAGACGGGAGGCAAATGGAGTGATTTTCATCAATGGAATTGCACTGACAGTGAGTGTTTCTTATA
1601 GGATTACTAAATTTTTTAATATAAAATGATTTGTTTAAAAATCAGGAGTTGATATTAAGTACCAGGACATTAGTTCGGAT
1681 GATTTCATTTTTATTTCTACAGTGTTAAAAGTGCACTTATATGCTGGTTTATTTACGTCTTGGGAAAAGAGACTGCAAAT
1761 TGAAGGGATGATTGTTACTTTTTCTTTTTTTAAAAAAAAAAGGTTAAGGAGATTTTAAGACTTATAAATGTTTAAGAAAT
1841 TATAAACAAGGTTAGACCCTTTGAAAAAAAGTTTAGAAGATATTCTTAAAGTAAATTTTTATAGTGTTAATTTTGTAATA
1921 ATTTATGTTTTACTATATTACAGAGCTAACTGACCAGAATAGTTTCAGAAACAATATGAAACTTAGGAAAGTTTAAGCAA
2001 TGTTTATATTTTTAAAATGTTCTTTGAATTATGTTTTTATTGTACATTTCTTCAGACTGAAAAGTATGTACATATCTTTG
2081 TTATTTTTGCACAATTTTGTCTTGTTCGGTTTCAGAGGTCTGTTGTTTTTTATAATTTATTTTGAGTTGTAAAACTTGCA
2161 GGAGTAAAAACAAAAAACAAAATCTCCACAACAAAATAACCCTCTGATTTATAAACTCTTATAGTCAAAGAGGGAAAACA
2241 AAGGTTGAGAGATTAAGTGGCTGCTTCTGAGAAATAATGTCTCAAGGACTAAAGGAGCAATTCAATAGGTTTAGACATTG
2321 TAGCTCTCTACATCTTGAATTGGAAGCTGGAATAAAGAGCCCCCACCCCCCCCCCCACCCTCATCGAATGCTGCTTACTT
2401 TGTCAAAAGACTGGCTATGACCAAGGTGAGGATATTTCTGGAAAACTGGGCAAAAAGGGAAAGCCCACAGTATTCTTCCT
2481 TGGCAGTCAACCACAGGTTTACTTTACAATGATGTATTAAAAACTTGCAGCTTGAAAAATGGAATGCAAATAAAAGGTTC
2561 TCTTTGGGTTTGTCTTAATGGAGTTAAACTGGAGCAGCCTATAAAACATTTTTAGGGTGATGTCCTCTGGGTCCTTCTGT
2641 TCTGCACACCCACTCAGTCTTCTCTCCCAGCCCCTTGACTGCACACACCCCTCTTTGCCTGAAGATCTCCTGACTTGTCG
2721 CCAGCCATAGAGGCTCGAAAGCTCTGGTTGTGAAGCATAACGCAATGCATAGACCTGTCAGCCATAAAAAAAAAAAAAAA
2801 AAAAAAAAAGCGACTTGGATAACTTGTATGCCTTCTTTTGTATCAATGTACCAATTGTAAATAATGCTGATCAACCTTTG
2881 TAGAGAATAGTTTATACAGCATATTCTATTATTGCTGATTCTCAGTGAACTCTTGTTTTAAAAAAGGAAAAAAAGAAATT
2961 TTCTATTTACACCTTATATTTTGTTATGCTGTCGGCCCATGGCACTTTAACAAAACTCTGTGGGTTTTACGTAGCTGGTC
3041 AGTCATGGGGTATATTAAATAACTGTTGTTGCACAGAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agAUUU---AGAGUAUCACGGAAGa 5'
            ||||   |||:| : ||||||| 
Target 5' gcTAAAGGTTCTTAGGCTGCCTTCc 3'
959 - 983 164.00 -16.20
2
miRNA  3' agAUUUA--GAGUAUCACGGAAGa 5'
            |::||  ||::|| ||||||| 
Target 5' ctTGGATAACTTGTA-TGCCTTCt 3'
2814 - 2836 161.00 -13.20
3
miRNA  3' agaUUUAGA-GUAUCACGGAAGa 5'
             :||||| || | | ||||| 
Target 5' cagGAATCTGCAGAATCCCTTCc 3'
823 - 845 135.00 -10.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31482226 50 COSMIC
COSN30133191 64 COSMIC
COSN14250292 142 COSMIC
COSN26845985 169 COSMIC
COSN31490377 181 COSMIC
COSN30167775 243 COSMIC
COSN26359121 431 COSMIC
COSN25260492 432 COSMIC
COSN7918936 463 COSMIC
COSN6342162 1091 COSMIC
COSN7918935 1349 COSMIC
COSN2190096 1740 COSMIC
COSN17513324 1791 COSMIC
COSN27537574 1791 COSMIC
COSN27644902 1792 COSMIC
COSN20104613 2365 COSMIC
COSN20506665 2365 COSMIC
COSN19453352 2727 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774118207 2 dbSNP
rs939452561 4 dbSNP
rs1239316057 5 dbSNP
rs1202216503 8 dbSNP
rs1452351893 10 dbSNP
rs547373490 12 dbSNP
rs1263400377 13 dbSNP
rs1220415589 16 dbSNP
rs1359265203 23 dbSNP
rs762312679 26 dbSNP
rs1180111550 36 dbSNP
rs984041923 43 dbSNP
rs1431377754 45 dbSNP
rs1438550671 51 dbSNP
rs548687673 52 dbSNP
rs1485307746 70 dbSNP
rs1272024396 75 dbSNP
rs1225844523 83 dbSNP
rs920850100 90 dbSNP
rs142963188 91 dbSNP
rs763569337 92 dbSNP
rs1396140647 95 dbSNP
rs964928350 100 dbSNP
rs1434654484 110 dbSNP
rs1260746413 112 dbSNP
rs1244661278 113 dbSNP
rs1399045609 114 dbSNP
rs915186911 127 dbSNP
rs989587184 130 dbSNP
rs1327715563 143 dbSNP
rs1299589814 145 dbSNP
rs567551074 149 dbSNP
rs1235771387 150 dbSNP
rs184548519 159 dbSNP
rs926495140 165 dbSNP
rs981889626 166 dbSNP
rs1387676492 168 dbSNP
rs1480821551 169 dbSNP
rs1164765594 170 dbSNP
rs180726970 178 dbSNP
rs1015477017 185 dbSNP
rs139372890 187 dbSNP
rs999779386 191 dbSNP
rs952416713 193 dbSNP
rs1253703047 200 dbSNP
rs1453913015 209 dbSNP
rs1470650696 210 dbSNP
rs1174550488 215 dbSNP
rs1027034970 222 dbSNP
rs368749033 223 dbSNP
rs549220237 224 dbSNP
rs545636720 228 dbSNP
rs188567295 229 dbSNP
rs1442634006 239 dbSNP
rs1009057784 245 dbSNP
rs113223563 248 dbSNP
rs374413629 248 dbSNP
rs1220728798 249 dbSNP
rs1319798074 259 dbSNP
rs1438139804 261 dbSNP
rs1022636732 273 dbSNP
rs1308038683 276 dbSNP
rs890600494 286 dbSNP
rs3823748 290 dbSNP
rs1336744733 308 dbSNP
rs895058870 308 dbSNP
rs1372188071 314 dbSNP
rs1055160784 316 dbSNP
rs1189580223 323 dbSNP
rs939316889 330 dbSNP
rs893840938 336 dbSNP
rs906627807 337 dbSNP
rs1408453662 340 dbSNP
rs1193170323 341 dbSNP
rs1421927199 346 dbSNP
rs191609454 348 dbSNP
rs543175829 355 dbSNP
rs1054192764 362 dbSNP
rs1304070732 363 dbSNP
rs1393300958 366 dbSNP
rs1047771533 369 dbSNP
rs574158740 370 dbSNP
rs560433590 372 dbSNP
rs1161399460 374 dbSNP
rs545695904 379 dbSNP
rs943650761 380 dbSNP
rs540043948 385 dbSNP
rs1293400187 394 dbSNP
rs1357107678 398 dbSNP
rs769949848 402 dbSNP
rs1274001510 408 dbSNP
rs187468130 422 dbSNP
rs955013944 431 dbSNP
rs557768608 432 dbSNP
rs1029833997 434 dbSNP
rs1190350161 448 dbSNP
rs781524422 449 dbSNP
rs977829855 450 dbSNP
rs748002943 458 dbSNP
rs1476361151 481 dbSNP
rs1189128945 507 dbSNP
rs966861720 515 dbSNP
rs767661284 532 dbSNP
rs1160909487 533 dbSNP
rs754848655 534 dbSNP
rs919643614 540 dbSNP
rs866380625 541 dbSNP
rs375707896 543 dbSNP
rs1377234877 545 dbSNP
rs538112082 548 dbSNP
rs1265916476 557 dbSNP
rs1292467158 560 dbSNP
rs1226820251 576 dbSNP
rs1224979883 579 dbSNP
rs1019389137 580 dbSNP
rs34798085 582 dbSNP
rs1033565594 585 dbSNP
rs1345674702 586 dbSNP
rs1003551804 601 dbSNP
rs1284448582 604 dbSNP
rs1486942982 608 dbSNP
rs753776214 629 dbSNP
rs759639461 634 dbSNP
rs1007940538 635 dbSNP
rs1386511841 649 dbSNP
rs575168769 654 dbSNP
rs899232452 660 dbSNP
rs779389356 662 dbSNP
rs1417960803 682 dbSNP
rs1291109719 685 dbSNP
rs1156310143 699 dbSNP
rs1454435068 714 dbSNP
rs1396753865 716 dbSNP
rs1387984125 727 dbSNP
rs1021532114 732 dbSNP
rs1357183890 744 dbSNP
rs1037895779 745 dbSNP
rs1471083823 749 dbSNP
rs750760888 753 dbSNP
rs943516313 762 dbSNP
rs755702183 766 dbSNP
rs1223221126 770 dbSNP
rs1307193777 771 dbSNP
rs184230957 772 dbSNP
rs933660504 783 dbSNP
rs922333004 784 dbSNP
rs1310760301 787 dbSNP
rs1207105735 790 dbSNP
rs1263820583 796 dbSNP
rs1480116386 796 dbSNP
rs1187022095 799 dbSNP
rs1464340796 804 dbSNP
rs1254331462 805 dbSNP
rs1053818365 807 dbSNP
rs1172909126 808 dbSNP
rs1422998866 810 dbSNP
rs1245669896 811 dbSNP
rs750016690 815 dbSNP
rs535221963 824 dbSNP
rs7777200 829 dbSNP
rs543620754 849 dbSNP
rs1446307860 850 dbSNP
rs989333064 860 dbSNP
rs1046469115 861 dbSNP
rs949439850 872 dbSNP
rs1441766308 878 dbSNP
rs959157413 888 dbSNP
rs1411838127 892 dbSNP
rs1033598097 894 dbSNP
rs1233032669 901 dbSNP
rs1003499381 903 dbSNP
rs751916475 910 dbSNP
rs368336011 911 dbSNP
rs193266097 913 dbSNP
rs1436486591 916 dbSNP
rs1196334121 923 dbSNP
rs1274719576 930 dbSNP
rs764558930 940 dbSNP
rs993887037 941 dbSNP
rs899264728 945 dbSNP
rs749155588 946 dbSNP
rs1244836893 949 dbSNP
rs1476356955 952 dbSNP
rs1037721852 954 dbSNP
rs1187095757 955 dbSNP
rs776085365 970 dbSNP
rs1463902437 974 dbSNP
rs889243485 978 dbSNP
rs1397001535 980 dbSNP
rs1461971979 997 dbSNP
rs534133018 1015 dbSNP
rs575904610 1020 dbSNP
rs919825528 1024 dbSNP
rs1454601961 1027 dbSNP
rs1407177417 1043 dbSNP
rs1302454112 1050 dbSNP
rs1340278028 1061 dbSNP
rs933609699 1067 dbSNP
rs963726390 1068 dbSNP
rs912196514 1073 dbSNP
rs571784941 1074 dbSNP
rs1208663662 1088 dbSNP
rs986581281 1092 dbSNP
rs375021267 1096 dbSNP
rs1448295362 1107 dbSNP
rs1170797321 1108 dbSNP
rs759700392 1109 dbSNP
rs551803572 1118 dbSNP
rs1241494323 1131 dbSNP
rs532015633 1150 dbSNP
rs557634908 1155 dbSNP
rs1021146635 1156 dbSNP
rs1184950203 1162 dbSNP
rs1420219927 1167 dbSNP
rs1475650998 1174 dbSNP
rs988700108 1183 dbSNP
rs958201834 1186 dbSNP
rs945016112 1199 dbSNP
rs146898491 1203 dbSNP
rs1255122410 1207 dbSNP
rs113369791 1214 dbSNP
rs141967130 1215 dbSNP
rs1315193851 1220 dbSNP
rs1356566078 1221 dbSNP
rs1002370593 1227 dbSNP
rs1352182947 1239 dbSNP
rs1223873577 1243 dbSNP
rs771197449 1247 dbSNP
rs959107329 1255 dbSNP
rs1024925558 1279 dbSNP
rs747242010 1283 dbSNP
rs926474783 1286 dbSNP
rs1485247831 1290 dbSNP
rs1187080595 1291 dbSNP
rs1229550902 1307 dbSNP
rs529446678 1308 dbSNP
rs1342104044 1317 dbSNP
rs532070058 1318 dbSNP
rs887175055 1320 dbSNP
rs1380158950 1336 dbSNP
rs1418391281 1343 dbSNP
rs1176152841 1347 dbSNP
rs1026625731 1359 dbSNP
rs1376412158 1360 dbSNP
rs1395858198 1361 dbSNP
rs560573340 1362 dbSNP
rs1046920806 1365 dbSNP
rs1442228347 1366 dbSNP
rs1296019289 1369 dbSNP
rs1248316410 1373 dbSNP
rs963675454 1386 dbSNP
rs1341139838 1387 dbSNP
rs931153250 1399 dbSNP
rs1236372108 1407 dbSNP
rs1281019596 1413 dbSNP
rs1343973460 1416 dbSNP
rs1198553015 1421 dbSNP
rs1254256496 1431 dbSNP
rs898306117 1441 dbSNP
rs540672820 1449 dbSNP
rs1179556244 1466 dbSNP
rs1016305287 1475 dbSNP
rs1039650046 1477 dbSNP
rs12154239 1478 dbSNP
rs1385776714 1489 dbSNP
rs148139033 1514 dbSNP
rs986447007 1518 dbSNP
rs1030487782 1531 dbSNP
rs998077263 1540 dbSNP
rs903456346 1541 dbSNP
rs1042336028 1553 dbSNP
rs989891128 1555 dbSNP
rs1330313216 1569 dbSNP
rs1373989969 1574 dbSNP
rs945062769 1576 dbSNP
rs1368670345 1578 dbSNP
rs1304021453 1585 dbSNP
rs1330450356 1588 dbSNP
rs1165386152 1592 dbSNP
rs564628978 1593 dbSNP
rs1444774405 1596 dbSNP
rs1339906386 1609 dbSNP
rs544209451 1611 dbSNP
rs1199471899 1612 dbSNP
rs1032479232 1616 dbSNP
rs1184699473 1618 dbSNP
rs1456463146 1618 dbSNP
rs1195611230 1619 dbSNP
rs981025148 1622 dbSNP
rs1250738474 1626 dbSNP
rs1197457945 1628 dbSNP
rs969612531 1633 dbSNP
rs1475975778 1644 dbSNP
rs893512953 1645 dbSNP
rs1206380430 1662 dbSNP
rs1053440344 1663 dbSNP
rs768468139 1665 dbSNP
rs1013527151 1673 dbSNP
rs749203779 1676 dbSNP
rs1273192139 1677 dbSNP
rs188614286 1688 dbSNP
rs1297683370 1693 dbSNP
rs995566335 1699 dbSNP
rs981958810 1701 dbSNP
rs1283705131 1715 dbSNP
rs780082126 1733 dbSNP
rs554986168 1736 dbSNP
rs536736970 1737 dbSNP
rs1264512769 1738 dbSNP
rs1242634777 1742 dbSNP
rs182861451 1744 dbSNP
rs942616706 1747 dbSNP
rs972352834 1754 dbSNP
rs1475973722 1757 dbSNP
rs1409055061 1760 dbSNP
rs963324697 1765 dbSNP
rs1016253154 1767 dbSNP
rs80176953 1770 dbSNP
rs1050969796 1783 dbSNP
rs1304672202 1790 dbSNP
rs552815178 1791 dbSNP
rs543141723 1792 dbSNP
rs1235336474 1797 dbSNP
rs1313766324 1799 dbSNP
rs997709811 1801 dbSNP
rs1242744442 1802 dbSNP
rs201488450 1802 dbSNP
rs990312503 1802 dbSNP
rs935757825 1803 dbSNP
rs1486879627 1806 dbSNP
rs1160978280 1809 dbSNP
rs1454873592 1828 dbSNP
rs925496163 1830 dbSNP
rs903309928 1840 dbSNP
rs1020446553 1857 dbSNP
rs980889290 1864 dbSNP
rs1156821139 1865 dbSNP
rs969643760 1871 dbSNP
rs1448512799 1875 dbSNP
rs918181904 1876 dbSNP
rs992399820 1880 dbSNP
rs1394310244 1885 dbSNP
rs1309226810 1888 dbSNP
rs951463025 1893 dbSNP
rs1240014253 1895 dbSNP
rs1284562633 1896 dbSNP
rs373501617 1907 dbSNP
rs1350439725 1918 dbSNP
rs1012274962 1921 dbSNP
rs1211299878 1926 dbSNP
rs893377993 1931 dbSNP
rs996033843 1935 dbSNP
rs1178647079 1955 dbSNP
rs962808817 1955 dbSNP
rs1053471698 1960 dbSNP
rs1176650338 1962 dbSNP
rs1396849443 1964 dbSNP
rs937636471 1971 dbSNP
rs904956340 1974 dbSNP
rs1006738552 1976 dbSNP
rs1357277820 1977 dbSNP
rs1289764903 1987 dbSNP
rs1333660344 1999 dbSNP
rs1377709350 2017 dbSNP
rs890937822 2019 dbSNP
rs1046536542 2022 dbSNP
rs1307656332 2040 dbSNP
rs571699895 2054 dbSNP
rs1051010089 2059 dbSNP
rs1278344711 2070 dbSNP
rs949250739 2072 dbSNP
rs1206157888 2080 dbSNP
rs1269070664 2103 dbSNP
rs1456901991 2104 dbSNP
rs867168492 2107 dbSNP
rs971915875 2108 dbSNP
rs1478310014 2110 dbSNP
rs1284995025 2118 dbSNP
rs1436875886 2122 dbSNP
rs1330505027 2126 dbSNP
rs941970995 2132 dbSNP
rs1173031770 2155 dbSNP
rs1401339901 2159 dbSNP
rs1383482468 2178 dbSNP
rs935774945 2178 dbSNP
rs1351746530 2183 dbSNP
rs367941083 2183 dbSNP
rs190961073 2192 dbSNP
rs986114330 2208 dbSNP
rs796537985 2216 dbSNP
rs867381541 2222 dbSNP
rs976610938 2230 dbSNP
rs571781606 2231 dbSNP
rs1274506159 2247 dbSNP
rs992829532 2257 dbSNP
rs1220706592 2259 dbSNP
rs1174726566 2260 dbSNP
rs1486699805 2269 dbSNP
rs1194120184 2279 dbSNP
rs1424529364 2287 dbSNP
rs1478540716 2290 dbSNP
rs1246701927 2293 dbSNP
rs1168883182 2305 dbSNP
rs1197349180 2306 dbSNP
rs1020899338 2308 dbSNP
rs951658997 2309 dbSNP
rs74744964 2320 dbSNP
rs1348652633 2325 dbSNP
rs370062610 2331 dbSNP
rs1340375103 2333 dbSNP
rs1216383883 2334 dbSNP
rs974087881 2336 dbSNP
rs957626866 2337 dbSNP
rs1227272221 2343 dbSNP
rs894090725 2353 dbSNP
rs1034570697 2357 dbSNP
rs1219634855 2358 dbSNP
rs1344033182 2359 dbSNP
rs1355784831 2361 dbSNP
rs1217323419 2362 dbSNP
rs1262197925 2364 dbSNP
rs538202920 2365 dbSNP
rs1491537780 2366 dbSNP
rs67686948 2366 dbSNP
rs1411794681 2367 dbSNP
rs202117184 2367 dbSNP
rs543116849 2367 dbSNP
rs1335733780 2368 dbSNP
rs1446571534 2368 dbSNP
rs200779433 2368 dbSNP
rs1187191187 2369 dbSNP
rs1280933116 2369 dbSNP
rs576844333 2369 dbSNP
rs1018387270 2370 dbSNP
rs1235779842 2370 dbSNP
rs1380255674 2370 dbSNP
rs1403424528 2371 dbSNP
rs569559260 2371 dbSNP
rs200955030 2372 dbSNP
rs1357991941 2373 dbSNP
rs199658092 2373 dbSNP
rs1199358544 2374 dbSNP
rs1417842023 2374 dbSNP
rs370383193 2375 dbSNP
rs746724851 2375 dbSNP
rs1432231208 2376 dbSNP
rs1491407735 2376 dbSNP
rs777207566 2376 dbSNP
rs1330073486 2377 dbSNP
rs1397578796 2377 dbSNP
rs200622868 2377 dbSNP
rs576263636 2377 dbSNP
rs745382605 2377 dbSNP
rs755822501 2377 dbSNP
rs777124679 2377 dbSNP
rs1479722512 2378 dbSNP
rs1491402650 2378 dbSNP
rs536522646 2379 dbSNP
rs1001877582 2384 dbSNP
rs904820986 2385 dbSNP
rs1046062812 2386 dbSNP
rs535179062 2389 dbSNP
rs897561474 2393 dbSNP
rs1477939778 2406 dbSNP
rs17150293 2422 dbSNP
rs1420801957 2447 dbSNP
rs1459010362 2448 dbSNP
rs529304714 2452 dbSNP
rs1451915300 2453 dbSNP
rs1391274433 2454 dbSNP
rs941846082 2457 dbSNP
rs1299796235 2458 dbSNP
rs1340970635 2463 dbSNP
rs909148731 2470 dbSNP
rs1054561088 2471 dbSNP
rs1277857933 2483 dbSNP
rs569046128 2490 dbSNP
rs79987178 2491 dbSNP
rs1239504306 2493 dbSNP
rs186750876 2507 dbSNP
rs77521628 2509 dbSNP
rs1220985213 2510 dbSNP
rs143738311 2512 dbSNP
rs913292017 2515 dbSNP
rs1192414605 2516 dbSNP
rs918121083 2523 dbSNP
rs1424978612 2528 dbSNP
rs1342840158 2540 dbSNP
rs12535264 2545 dbSNP
rs1367446413 2546 dbSNP
rs957491682 2547 dbSNP
rs1225627630 2550 dbSNP
rs1384345963 2577 dbSNP
rs1160428215 2579 dbSNP
rs1284214235 2579 dbSNP
rs1360903680 2588 dbSNP
rs1446839055 2593 dbSNP
rs930247685 2615 dbSNP
rs1357033443 2621 dbSNP
rs1034602888 2627 dbSNP
rs918855944 2630 dbSNP
rs1332636841 2643 dbSNP
rs111736885 2647 dbSNP
rs1001826709 2649 dbSNP
rs1339984536 2655 dbSNP
rs1244390027 2668 dbSNP
rs1371758041 2671 dbSNP
rs1288806253 2697 dbSNP
rs941344214 2697 dbSNP
rs1216355680 2698 dbSNP
rs911191057 2715 dbSNP
rs1484023691 2720 dbSNP
rs182802460 2722 dbSNP
rs1025091833 2725 dbSNP
rs1013234458 2726 dbSNP
rs117515381 2728 dbSNP
rs1380875620 2736 dbSNP
rs929375726 2737 dbSNP
rs1156652218 2743 dbSNP
rs1036085628 2745 dbSNP
rs1006020985 2746 dbSNP
rs1032950029 2747 dbSNP
rs1207079844 2748 dbSNP
rs1312010485 2758 dbSNP
rs76698703 2761 dbSNP
rs541693606 2762 dbSNP
rs1202952284 2763 dbSNP
rs1314352075 2766 dbSNP
rs553861331 2770 dbSNP
rs1255076181 2771 dbSNP
rs1050208957 2772 dbSNP
rs1199763580 2782 dbSNP
rs1453069089 2783 dbSNP
rs1376582919 2784 dbSNP
rs1265047028 2785 dbSNP
rs1238317973 2786 dbSNP
rs869211380 2786 dbSNP
rs1491578896 2787 dbSNP
rs1351477745 2788 dbSNP
rs905546404 2788 dbSNP
rs1307752580 2789 dbSNP
rs1428390167 2793 dbSNP
rs1426977647 2797 dbSNP
rs931926622 2798 dbSNP
rs1177003346 2799 dbSNP
rs866068599 2799 dbSNP
rs1165632101 2800 dbSNP
rs1040794884 2801 dbSNP
rs1333437857 2802 dbSNP
rs1404804509 2802 dbSNP
rs1401210983 2803 dbSNP
rs1433157556 2804 dbSNP
rs73192165 2804 dbSNP
rs1327202338 2805 dbSNP
rs1411975603 2806 dbSNP
rs1184593485 2808 dbSNP
rs1491380712 2809 dbSNP
rs1190418096 2810 dbSNP
rs1202292425 2810 dbSNP
rs1220209098 2810 dbSNP
rs1248413714 2810 dbSNP
rs1258106251 2810 dbSNP
rs1300086777 2810 dbSNP
rs1320953081 2810 dbSNP
rs1344066263 2810 dbSNP
rs1351329368 2810 dbSNP
rs1456968303 2810 dbSNP
rs1479578803 2810 dbSNP
rs1488644082 2810 dbSNP
rs1491313977 2810 dbSNP
rs895554854 2810 dbSNP
rs1262482670 2811 dbSNP
rs1401437509 2811 dbSNP
rs1230300528 2812 dbSNP
rs34269662 2813 dbSNP
rs1338130222 2818 dbSNP
rs1212295249 2820 dbSNP
rs1291862502 2822 dbSNP
rs1322245855 2823 dbSNP
rs1047904658 2839 dbSNP
rs1196056819 2840 dbSNP
rs768242054 2847 dbSNP
rs913314532 2851 dbSNP
rs34287416 2859 dbSNP
rs1475087308 2864 dbSNP
rs1473008276 2865 dbSNP
rs1250803288 2869 dbSNP
rs572521427 2871 dbSNP
rs1416134359 2895 dbSNP
rs1179695419 2898 dbSNP
rs930176028 2903 dbSNP
rs1163560991 2908 dbSNP
rs1489437371 2930 dbSNP
rs897276419 2931 dbSNP
rs990194236 2932 dbSNP
rs1220241894 2935 dbSNP
rs936067420 2944 dbSNP
rs1325500124 2952 dbSNP
rs1319401063 2953 dbSNP
rs911263251 2957 dbSNP
rs927479222 2957 dbSNP
rs552918110 2972 dbSNP
rs1289536029 2974 dbSNP
rs1228642885 2991 dbSNP
rs190162254 2994 dbSNP
rs566341591 2996 dbSNP
rs576868393 2998 dbSNP
rs1213965755 2999 dbSNP
rs992249852 3011 dbSNP
rs186180104 3015 dbSNP
rs1183471826 3016 dbSNP
rs1370408341 3016 dbSNP
rs1384784452 3020 dbSNP
rs955903162 3020 dbSNP
rs148852852 3028 dbSNP
rs1005958662 3030 dbSNP
rs969947888 3031 dbSNP
rs1451320849 3034 dbSNP
rs569425325 3059 dbSNP
rs1022613047 3072 dbSNP
rs1240860023 3078 dbSNP
rs887513273 3079 dbSNP
rs754304435 3081 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 222255.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agauuuagAGUAUCACGGAAGa 5'
                  |::|| ||||||| 
Target 5' --------UUGUA-UGCCUUCu 3'
1 - 13
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 222255.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agauuuagAGUAUCACGGAAGa 5'
                  |::|| ||||||| 
Target 5' --------UUGUA-UGCCUUCu 3'
1 - 13
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000419735.3 | 3UTR | UUGUAUGCCUUCUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000419735.3 | 3UTR | UUGUAUGCCUUCUUUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

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